17-03-17 22:08:27.288 -07 000000610 INF: =================== Cycle #60 ===================
17-03-17 22:08:27.288 -07 000000610 INF: Y Motor: Entering MoveAbsStepped (target = 120609 steps, sync = True, waitForSettling = True)
17-03-17 22:08:27.288 -07 000000610 INF: Y Motor: Moving to 75.3806 mm, started at 74.8325 mm, delta = 0.5481 mm
17-03-17 22:08:27.288 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:08:27.298 -07 000000448 INF: FPGA: Recv YRDPOS 153257
17-03-17 22:08:27.298 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:08:27.298 -07 000000610 INF: Y Motor: Encoder = 153257 = motor step 119732.0 = 74.8325 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:08:27.298 -07 000000610 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = 0.5280 mm (844.8 steps). UsingTableMove = False
17-03-17 22:08:27.298 -07 000000610 INF: Y Motor: Moving to 154379 encoder counts
17-03-17 22:08:27.298 -07 000000610 INF: FPGA: Xmit YMVTO 154379\n [Y Motor]
17-03-17 22:08:27.408 -07 000000433 INF: FPGA: Recv YMVTO 154377 872
17-03-17 22:08:27.408 -07 000000610 INF: FPGA: 'YMVTO 154379' command took 0 ms to send, 107 ms to get response, and 116 ms overall
17-03-17 22:08:27.408 -07 000000610 INF: Y Motor: Position error before settling = -2 encoder counts (-0.001 mm)
17-03-17 22:08:27.408 -07 000000610 INF: Y Motor: To move from 74.833 to 75.381 (0.548 mm) should take 877 steps, but required 872 steps (0.545 mm). Slippage = -0.003 mm (-0.01%).
17-03-17 22:08:27.408 -07 000000610 INF: Y Motor: FPGA move command 'YMVTO 154379' took 116 ms, distance = 0.548 mm, average velocity = 4.725 mm/sec
17-03-17 22:08:29.058 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 60, FrontChillerTemperature: 3.988112,
17-03-17 22:08:30.408 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:08:30.408 -07 000000448 INF: FPGA: Recv YRDPOS 154380
17-03-17 22:08:30.418 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:08:30.418 -07 000000610 INF: Y Motor: Encoder = 154380 = motor step 120609.4 = 75.3809 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:08:30.428 -07 000000610 INF: Y Motor: After move to 75.380580, error = 0.000279, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:08:30.428 -07 000000610 INF: Y Motor: Position error after settling = 1 encoder counts (0.000 mm), Delta during settling = 3 counts (0.001 mm)
17-03-17 22:08:30.428 -07 000000610 INF: Y Motor: Moved to 75.3809 after 3140 ms
17-03-17 22:08:30.438 -07 000000610 INF: =================== Cycle #60, Flow Cell Temp 60° ===================
17-03-17 22:08:30.438 -07 000000610 INF: =================== Cycle #60, Flow Cell Temp 60°, FC temperature to 60° ===================
17-03-17 22:08:30.438 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 60000000\n [FlowCellTempControl]
17-03-17 22:08:30.438 -07 000000438 INF: FPGA: Recv TEC2TEMP 
17-03-17 22:08:30.448 -07 000000610 INF: FPGA: 'TEC2TEMP 0 60000000' command took 1 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:08:30.448 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 22:08:30.448 -07 000000448 INF: FPGA: Recv TEC2EN 
17-03-17 22:08:30.458 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:08:30.458 -07 000000610 INF: =================== Cycle #60, Flow Cell Temp 60° ===================
17-03-17 22:08:30.458 -07 000000610 INF: =================== Cycle #60 ===================
17-03-17 22:08:30.458 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 22:08:30.458 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 22:08:30.488 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-17 22:08:30.488 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 24 to 3. Moving 3 positions.
17-03-17 22:08:30.488 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 22:08:30.788 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 22:08:30.808 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-17 22:08:30.808 -07 000000610 INF: ReagentValve: Move+ from 24 to 3 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-17 22:08:30.858 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 22:08:30.878 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 22:08:30.878 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 22:08:30.978 -07 000000610 INF: =================== Cycle #60, Pumping Reagent PR2 (3) ===================
17-03-17 22:08:30.978 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-17 22:08:30.978 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:08:31.008 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 22:08:31.008 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 22:08:31.008 -07 000000610 INF: =================== Cycle #60, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 22:08:31.138 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-17 22:08:31.178 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:08:31.948 -07 000000448 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:08:31.948 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 59. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=930, R2=952, Total=1882. Warn if over 250 bubbles per interval.
17-03-17 22:08:34.308 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:08:34.338 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:08:34.418 -07 000000438 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 60, FrontChillerTemperature: 3.990831,
17-03-17 22:08:34.758 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:08:34.788 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:08:35.208 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:08:35.238 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:08:35.238 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-17 22:08:35.238 -07 000000610 INF: =================== Cycle #60, Pumping Reagent PR2 (3) ===================
17-03-17 22:08:35.368 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:08:35.398 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 22:08:35.398 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 22:08:35.528 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:08:35.558 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 22:08:35.558 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 22:08:35.558 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 22:08:35.688 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 22:08:35.718 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:08:36.148 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:08:36.178 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:08:36.178 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 22:08:36.178 -07 000000610 INF: =================== Cycle #60 ===================
17-03-17 22:08:36.948 -07 000000475 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:08:36.948 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 59. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=930, R2=952, Total=1882. Warn if over 250 bubbles per interval.
17-03-17 22:08:37.398 -07 000000610 INF: AsyncDelayTimer waited 1213ms
17-03-17 22:08:37.398 -07 000000610 INF: ReagentValve: Go to position 4 - PumpToFlowcell start
17-03-17 22:08:37.398 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 22:08:37.418 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 22:08:37.418 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 3 to 4. Moving 1 positions.
17-03-17 22:08:37.418 -07 000000610 INF: ReagentValve: Xmit +04\r
17-03-17 22:08:37.558 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 22:08:37.578 -07 000000610 INF: ReagentValve: Recv 00CD\r
17-03-17 22:08:37.578 -07 000000610 INF: ReagentValve: Move+ from 3 to 4 took 205 steps, expected 204. Error = 1 steps (0.5%)
17-03-17 22:08:37.628 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 22:08:37.648 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-17 22:08:37.648 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 22:08:37.748 -07 000000610 INF: =================== Cycle #60, Pumping Reagent CMS (4) ===================
17-03-17 22:08:37.748 -07 000000610 INF: LanePump: Pumping from 4, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 22:08:37.748 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:08:37.778 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 22:08:37.778 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 22:08:37.778 -07 000000610 INF: =================== Cycle #60, Pumping Reagent CMS (4), Aspirating port InputPort ===================
17-03-17 22:08:37.908 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 22:08:37.948 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:08:39.388 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:08:39.418 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:08:39.778 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 60, FrontChillerTemperature: 4.008536,
17-03-17 22:08:39.838 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:08:39.868 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:08:39.868 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-17 22:08:39.868 -07 000000610 INF: =================== Cycle #60, Pumping Reagent CMS (4) ===================
17-03-17 22:08:39.998 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:08:40.028 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 22:08:40.028 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 22:08:40.158 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:08:40.188 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 22:08:40.188 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 22:08:40.188 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 22:08:40.318 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 22:08:40.348 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:08:40.778 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:08:40.808 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:08:40.808 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 22:08:40.808 -07 000000610 INF: =================== Cycle #60 ===================
17-03-17 22:08:41.948 -07 000000433 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:08:41.948 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 59. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=930, R2=952, Total=1882. Warn if over 250 bubbles per interval.
17-03-17 22:08:42.028 -07 000000610 INF: AsyncDelayTimer waited 1217ms
17-03-17 22:08:42.028 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 22:08:42.028 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 22:08:42.048 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-17 22:08:42.048 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 4 to 3. Moving 1 positions.
17-03-17 22:08:42.048 -07 000000610 INF: ReagentValve: Xmit -03\r
17-03-17 22:08:42.198 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 22:08:42.218 -07 000000610 INF: ReagentValve: Recv 00E1\r
17-03-17 22:08:42.218 -07 000000610 INF: ReagentValve: Move- from 4 to 3 took 225 steps, expected 204. Error = 21 steps (10.3%)
17-03-17 22:08:42.268 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 22:08:42.288 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 22:08:42.288 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 22:08:42.388 -07 000000610 INF: =================== Cycle #60, Pumping Reagent PR2 (3) ===================
17-03-17 22:08:42.388 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 22:08:42.388 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:08:42.418 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 22:08:42.418 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 22:08:42.418 -07 000000610 INF: =================== Cycle #60, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 22:08:42.548 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 22:08:42.588 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:08:43.458 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:08:43.488 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:08:43.488 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-17 22:08:43.488 -07 000000610 INF: =================== Cycle #60, Pumping Reagent PR2 (3) ===================
17-03-17 22:08:43.618 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:08:43.648 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 22:08:43.648 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 22:08:43.778 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:08:43.808 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 22:08:43.808 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 22:08:43.808 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 22:08:43.938 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 22:08:43.968 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:08:44.398 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:08:44.428 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:08:44.428 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 22:08:44.428 -07 000000610 INF: =================== Cycle #60 ===================
17-03-17 22:08:44.428 -07 000000475 INF: WaitCommand(10000) start
17-03-17 22:08:44.428 -07 000000623 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 22:08:44.428 -07 000000623 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 22:08:45.138 -07 000000448 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 60, FrontChillerTemperature: 3.981281,
17-03-17 22:08:45.648 -07 000000623 INF: AsyncDelayTimer waited 1214ms
17-03-17 22:08:45.648 -07 000000623 INF: LanePump: Xmit /1?\r
17-03-17 22:08:45.678 -07 000000623 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 22:08:45.678 -07 000000623 INF: LanePump: Current Position of Pump is: 1110
17-03-17 22:08:45.808 -07 000000623 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 22:08:45.848 -07 000000623 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:08:46.948 -07 000000448 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 2
17-03-17 22:08:46.948 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 59. Bubbles during last 5000 ms interval: R1=2, R2=1, Total=3. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=932, R2=953, Total=1885. Warn if over 250 bubbles per interval.
17-03-17 22:08:47.378 -07 000000623 INF: LanePump: Xmit /1Q\r
17-03-17 22:08:47.408 -07 000000623 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:08:47.828 -07 000000623 INF: LanePump: Xmit /1Q\r
17-03-17 22:08:47.858 -07 000000623 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:08:47.858 -07 000000623 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-17 22:08:47.858 -07 000000623 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 22:08:47.858 -07 000000623 INF: ===================  ===================
17-03-17 22:08:50.498 -07 000000623 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 60, FrontChillerTemperature: 3.996267,
17-03-17 22:08:51.948 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 2 R1 1
17-03-17 22:08:51.948 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 59. Bubbles during last 5000 ms interval: R1=1, R2=2, Total=3. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=933, R2=955, Total=1888. Warn if over 250 bubbles per interval.
17-03-17 22:08:54.438 -07 000000475 INF: WaitCommand(10000) end
17-03-17 22:08:54.438 -07 000000610 INF: =================== Cycle #60, Pumping Reagent PR2 (3) ===================
17-03-17 22:08:54.438 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 250 µL, calling command Pumping to Flow Cell #1
17-03-17 22:08:54.438 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:08:54.478 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 22:08:54.478 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 22:08:54.478 -07 000000610 INF: =================== Cycle #60, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 22:08:54.608 -07 000000610 INF: LanePump: Xmit /1V400IP1500R\r
17-03-17 22:08:54.648 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:08:55.858 -07 000000623 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 60, FrontChillerTemperature: 3.996267,
17-03-17 22:08:56.948 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 0
17-03-17 22:08:56.948 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 59. Bubbles during last 5000 ms interval: R1=0, R2=1, Total=1. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=933, R2=956, Total=1889. Warn if over 250 bubbles per interval.
17-03-17 22:09:00.778 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:09:00.808 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:09:01.218 -07 000000429 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 60, FrontChillerTemperature: 4.008536,
17-03-17 22:09:01.228 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:09:01.258 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:09:01.678 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:09:01.708 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:09:01.948 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 2 R1 3
17-03-17 22:09:01.948 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 59. Bubbles during last 5000 ms interval: R1=3, R2=2, Total=5. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=936, R2=958, Total=1894. Warn if over 250 bubbles per interval.
17-03-17 22:09:02.128 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:09:02.158 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:09:02.578 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:09:02.608 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:09:02.608 -07 000000610 INF: LanePump: Waited 7959 ms for pump motion to complete
17-03-17 22:09:02.608 -07 000000610 INF: =================== Cycle #60, Pumping Reagent PR2 (3) ===================
17-03-17 22:09:02.738 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:09:02.768 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 22:09:02.768 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 22:09:02.898 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:09:02.928 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 22:09:02.928 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 22:09:02.928 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 22:09:03.058 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 22:09:03.088 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:09:03.518 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:09:03.548 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:09:03.548 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 22:09:03.548 -07 000000610 INF: =================== Cycle #60 ===================
17-03-17 22:09:04.768 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 22:09:04.768 -07 000000610 INF: ReagentValve: Go to position 1 - PumpToFlowcell start
17-03-17 22:09:04.768 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 22:09:04.788 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 22:09:04.788 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 1. Moving 2 positions.
17-03-17 22:09:04.788 -07 000000610 INF: ReagentValve: Xmit -01\r
17-03-17 22:09:04.998 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 22:09:05.018 -07 000000610 INF: ReagentValve: Recv 0198\r
17-03-17 22:09:05.018 -07 000000610 INF: ReagentValve: Move- from 3 to 1 took 408 steps, expected 408. Error = 0 steps (0.0%)
17-03-17 22:09:05.068 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 22:09:05.088 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-17 22:09:05.088 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 22:09:05.188 -07 000000610 INF: =================== Cycle #60, Pumping Reagent IMT (1) ===================
17-03-17 22:09:05.188 -07 000000610 INF: LanePump: Pumping from 1, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 22:09:05.188 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:09:05.218 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 22:09:05.218 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 22:09:05.218 -07 000000610 INF: =================== Cycle #60, Pumping Reagent IMT (1), Aspirating port InputPort ===================
17-03-17 22:09:05.348 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 22:09:05.388 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:09:06.578 -07 000000448 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 60, FrontChillerTemperature: 4.023489,
17-03-17 22:09:06.828 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:09:06.858 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:09:06.948 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 4 R1 5
17-03-17 22:09:06.948 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 59. Bubbles during last 5000 ms interval: R1=5, R2=4, Total=9. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=941, R2=962, Total=1903. Warn if over 250 bubbles per interval.
17-03-17 22:09:07.278 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:09:07.308 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:09:07.308 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-17 22:09:07.308 -07 000000610 INF: =================== Cycle #60, Pumping Reagent IMT (1) ===================
17-03-17 22:09:07.438 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:09:07.468 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 22:09:07.468 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 22:09:07.598 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:09:07.628 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 22:09:07.628 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 22:09:07.628 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 22:09:07.758 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 22:09:07.788 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:09:08.218 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:09:08.248 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:09:08.248 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 22:09:08.248 -07 000000610 INF: =================== Cycle #60 ===================
17-03-17 22:09:09.468 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 22:09:09.468 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 22:09:09.468 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 22:09:09.488 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-17 22:09:09.488 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 1 to 3. Moving 2 positions.
17-03-17 22:09:09.488 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 22:09:09.718 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 22:09:09.738 -07 000000610 INF: ReagentValve: Recv 01AC\r
17-03-17 22:09:09.738 -07 000000610 INF: ReagentValve: Move+ from 1 to 3 took 428 steps, expected 408. Error = 20 steps (4.9%)
17-03-17 22:09:09.788 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 22:09:09.808 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 22:09:09.808 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 22:09:09.908 -07 000000610 INF: =================== Cycle #60, Pumping Reagent PR2 (3) ===================
17-03-17 22:09:09.908 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 22:09:09.908 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:09:09.948 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 22:09:09.948 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 22:09:09.948 -07 000000610 INF: =================== Cycle #60, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 22:09:10.078 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 22:09:10.118 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:09:10.988 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:09:11.018 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:09:11.018 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-17 22:09:11.018 -07 000000610 INF: =================== Cycle #60, Pumping Reagent PR2 (3) ===================
17-03-17 22:09:11.148 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:09:11.178 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 22:09:11.178 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 22:09:11.308 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:09:11.338 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 22:09:11.338 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 22:09:11.338 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 22:09:11.468 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 22:09:11.498 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:09:11.928 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:09:11.938 -07 000000433 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 60, FrontChillerTemperature: 4.001704,
17-03-17 22:09:11.948 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 5 R1 3
17-03-17 22:09:11.948 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 59. Bubbles during last 5000 ms interval: R1=3, R2=5, Total=8. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=944, R2=967, Total=1911. Warn if over 250 bubbles per interval.
17-03-17 22:09:11.958 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:09:11.958 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 22:09:11.958 -07 000000610 INF: =================== Cycle #60 ===================
17-03-17 22:09:11.958 -07 000000610 INF: =================== Cycle #60, Flow Cell Temp 65° ===================
17-03-17 22:09:11.958 -07 000000610 INF: =================== Cycle #60, Flow Cell Temp 65°, FC temperature to 65° ===================
17-03-17 22:09:11.978 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 65000000\n [FlowCellTempControl]
17-03-17 22:09:11.978 -07 000000502 INF: FPGA: Recv TEC2TEMP 
17-03-17 22:09:11.988 -07 000000610 INF: FPGA: 'TEC2TEMP 0 65000000' command took 1 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 22:09:11.988 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 22:09:11.988 -07 000000623 INF: FPGA: Recv TEC2EN 
17-03-17 22:09:11.998 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:09:11.998 -07 000000610 INF: =================== Cycle #60, Flow Cell Temp 65° ===================
17-03-17 22:09:11.998 -07 000000610 INF: =================== Cycle #60 ===================
17-03-17 22:09:11.998 -07 000000610 INF: WaitCommand(30000) start
17-03-17 22:09:16.948 -07 000000475 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:09:16.948 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 59. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=944, R2=967, Total=1911. Warn if over 250 bubbles per interval.
17-03-17 22:09:17.298 -07 000000012 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 60, FrontChillerTemperature: 3.96762,
17-03-17 22:09:21.948 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:09:21.948 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 59. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=944, R2=967, Total=1911. Warn if over 250 bubbles per interval.
17-03-17 22:09:22.658 -07 000000012 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 60, FrontChillerTemperature: 3.978563,
17-03-17 22:09:26.948 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:09:26.948 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 59. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=944, R2=967, Total=1911. Warn if over 250 bubbles per interval.
17-03-17 22:09:28.018 -07 000000478 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 60, FrontChillerTemperature: 3.983999,
17-03-17 22:09:31.948 -07 000000623 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:09:31.948 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 59. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=944, R2=967, Total=1911. Warn if over 250 bubbles per interval.
17-03-17 22:09:33.378 -07 000000012 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 60, FrontChillerTemperature: 4.007176,
17-03-17 22:09:36.948 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:09:36.948 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 59. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=944, R2=967, Total=1911. Warn if over 250 bubbles per interval.
17-03-17 22:09:38.738 -07 000000623 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 60, FrontChillerTemperature: 4.03576,
17-03-17 22:09:41.948 -07 000000623 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:09:41.948 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 59. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=944, R2=967, Total=1911. Warn if over 250 bubbles per interval.
17-03-17 22:09:42.008 -07 000000610 INF: WaitCommand(30000) end
17-03-17 22:09:42.008 -07 000000610 INF: =================== Cycle #60, Pumping Reagent PR2 (3) ===================
17-03-17 22:09:42.008 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 5 µL, calling command Pumping to Flow Cell #1
17-03-17 22:09:42.088 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:09:42.118 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 22:09:42.118 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 22:09:42.118 -07 000000610 INF: =================== Cycle #60, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 22:09:42.248 -07 000000610 INF: LanePump: Xmit /1V400IP30R\r
17-03-17 22:09:42.288 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:09:42.828 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:09:42.858 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:09:42.858 -07 000000610 INF: LanePump: Waited 569 ms for pump motion to complete
17-03-17 22:09:42.858 -07 000000610 INF: =================== Cycle #60, Pumping Reagent PR2 (3) ===================
17-03-17 22:09:42.988 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:09:43.018 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 22:09:43.018 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-17 22:09:43.148 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:09:43.178 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 22:09:43.178 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-17 22:09:43.178 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 22:09:43.308 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 22:09:43.338 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:09:43.768 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:09:43.798 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:09:43.798 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 22:09:43.798 -07 000000610 INF: =================== Cycle #60 ===================
17-03-17 22:09:43.798 -07 000000424 INF: WaitCommand(30000) start
17-03-17 22:09:43.798 -07 000000482 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 22:09:43.798 -07 000000482 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 22:09:44.098 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 60, FrontChillerTemperature: 4.026244,
17-03-17 22:09:45.018 -07 000000482 INF: AsyncDelayTimer waited 1215ms
17-03-17 22:09:45.018 -07 000000482 INF: LanePump: Xmit /1?\r
17-03-17 22:09:45.048 -07 000000482 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 22:09:45.048 -07 000000482 INF: LanePump: Current Position of Pump is: 1920
17-03-17 22:09:45.178 -07 000000482 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 22:09:45.218 -07 000000482 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:09:46.948 -07 000000478 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:09:46.948 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 59. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=944, R2=967, Total=1911. Warn if over 250 bubbles per interval.
17-03-17 22:09:47.558 -07 000000482 INF: LanePump: Xmit /1Q\r
17-03-17 22:09:47.588 -07 000000482 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:09:48.008 -07 000000482 INF: LanePump: Xmit /1Q\r
17-03-17 22:09:48.038 -07 000000482 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:09:48.038 -07 000000482 INF: LanePump: Waited 2819 ms for pump motion to complete
17-03-17 22:09:48.038 -07 000000482 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 22:09:48.038 -07 000000482 INF: ===================  ===================
17-03-17 22:09:49.458 -07 000000623 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 60, FrontChillerTemperature: 4.007176,
17-03-17 22:09:51.948 -07 000000478 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:09:51.948 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 59. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=944, R2=967, Total=1911. Warn if over 250 bubbles per interval.
17-03-17 22:09:54.818 -07 000000448 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 60, FrontChillerTemperature: 4.011254,
17-03-17 22:09:56.948 -07 000000448 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:09:56.948 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 59. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=944, R2=967, Total=1911. Warn if over 250 bubbles per interval.
17-03-17 22:10:00.178 -07 000000448 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 60, FrontChillerTemperature: 3.99219,
17-03-17 22:10:01.948 -07 000000482 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:10:01.948 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 59. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=944, R2=967, Total=1911. Warn if over 250 bubbles per interval.
17-03-17 22:10:05.538 -07 000000448 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 60, FrontChillerTemperature: 3.979922,
17-03-17 22:10:06.948 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:10:06.948 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 59. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=944, R2=967, Total=1911. Warn if over 250 bubbles per interval.
17-03-17 22:10:10.898 -07 000000482 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 60, FrontChillerTemperature: 3.997626,
17-03-17 22:10:11.948 -07 000000448 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:10:11.948 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 59. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=944, R2=967, Total=1911. Warn if over 250 bubbles per interval.
17-03-17 22:10:13.808 -07 000000424 INF: WaitCommand(30000) end
17-03-17 22:10:13.808 -07 000000610 INF: =================== Cycle #60, Flow Cell Temp 22° ===================
17-03-17 22:10:13.808 -07 000000610 INF: =================== Cycle #60, Flow Cell Temp 22°, FC temperature to 22° ===================
17-03-17 22:10:13.808 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 22000000\n [FlowCellTempControl]
17-03-17 22:10:13.818 -07 000000012 INF: FPGA: Recv TEC2TEMP 
17-03-17 22:10:13.818 -07 000000610 INF: FPGA: 'TEC2TEMP 0 22000000' command took 1 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:10:13.818 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 22:10:13.818 -07 000000438 INF: FPGA: Recv TEC2EN 
17-03-17 22:10:13.828 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:10:13.828 -07 000000610 INF: =================== Cycle #60, Flow Cell Temp 22° ===================
17-03-17 22:10:13.828 -07 000000610 INF: =================== Cycle #60 ===================
17-03-17 22:10:13.828 -07 000000610 INF: =================== Cycle #60, Pumping Reagent PR2 (3) ===================
17-03-17 22:10:13.828 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-17 22:10:13.828 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:10:13.868 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 22:10:13.868 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 22:10:13.868 -07 000000610 INF: =================== Cycle #60, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 22:10:13.998 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-17 22:10:14.038 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:10:16.258 -07 000000482 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 60, FrontChillerTemperature: 3.983999,
17-03-17 22:10:16.948 -07 000000623 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:10:16.948 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 59. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=944, R2=967, Total=1911. Warn if over 250 bubbles per interval.
17-03-17 22:10:17.168 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:10:17.198 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:10:17.618 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:10:17.648 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:10:18.068 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:10:18.098 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:10:18.098 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-17 22:10:18.098 -07 000000610 INF: =================== Cycle #60, Pumping Reagent PR2 (3) ===================
17-03-17 22:10:18.228 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:10:18.258 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 22:10:18.258 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 22:10:18.388 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:10:18.418 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 22:10:18.418 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 22:10:18.418 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 22:10:18.548 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 22:10:18.578 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:10:19.008 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:10:19.038 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:10:19.038 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 22:10:19.038 -07 000000610 INF: =================== Cycle #60 ===================
17-03-17 22:10:20.258 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 22:10:20.258 -07 000000610 INF: ReagentValve: Go to position 2 - PumpToFlowcell start
17-03-17 22:10:20.258 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 22:10:20.278 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 22:10:20.278 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 2. Moving 1 positions.
17-03-17 22:10:20.278 -07 000000610 INF: ReagentValve: Xmit -02\r
17-03-17 22:10:20.428 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 22:10:20.448 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-17 22:10:20.448 -07 000000610 INF: ReagentValve: Move- from 3 to 2 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-17 22:10:20.498 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 22:10:20.518 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-17 22:10:20.518 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 22:10:20.618 -07 000000610 INF: =================== Cycle #60, Pumping Reagent USM (2) ===================
17-03-17 22:10:20.618 -07 000000610 INF: LanePump: Pumping from 2, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 22:10:20.618 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:10:20.648 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 22:10:20.648 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 22:10:20.648 -07 000000610 INF: =================== Cycle #60, Pumping Reagent USM (2), Aspirating port InputPort ===================
17-03-17 22:10:20.778 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 22:10:20.818 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:10:21.618 -07 000000012 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 60, FrontChillerTemperature: 3.983999,
17-03-17 22:10:21.948 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:10:21.948 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 59. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=944, R2=967, Total=1911. Warn if over 250 bubbles per interval.
17-03-17 22:10:22.258 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:10:22.288 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:10:22.708 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:10:22.738 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:10:22.738 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-17 22:10:22.738 -07 000000610 INF: =================== Cycle #60, Pumping Reagent USM (2) ===================
17-03-17 22:10:22.868 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:10:22.898 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 22:10:22.898 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 22:10:23.028 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:10:23.058 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 22:10:23.058 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 22:10:23.058 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 22:10:23.188 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 22:10:23.218 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:10:23.648 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:10:23.678 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:10:23.678 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 22:10:23.678 -07 000000610 INF: =================== Cycle #60 ===================
17-03-17 22:10:24.898 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 22:10:24.898 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 22:10:24.898 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 22:10:24.918 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-17 22:10:24.918 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 2 to 3. Moving 1 positions.
17-03-17 22:10:24.918 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 22:10:25.068 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 22:10:25.088 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-17 22:10:25.088 -07 000000610 INF: ReagentValve: Move+ from 2 to 3 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-17 22:10:25.138 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 22:10:25.158 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 22:10:25.158 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 22:10:25.258 -07 000000610 INF: =================== Cycle #60, Pumping Reagent PR2 (3) ===================
17-03-17 22:10:25.258 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 22:10:25.258 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:10:25.288 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 22:10:25.288 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 22:10:25.288 -07 000000610 INF: =================== Cycle #60, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 22:10:25.418 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 22:10:25.458 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:10:26.328 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:10:26.358 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:10:26.358 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-17 22:10:26.358 -07 000000610 INF: =================== Cycle #60, Pumping Reagent PR2 (3) ===================
17-03-17 22:10:26.488 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:10:26.518 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 22:10:26.518 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 22:10:26.648 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:10:26.678 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 22:10:26.678 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 22:10:26.678 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 22:10:26.808 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 22:10:26.838 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:10:26.948 -07 000000448 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 1
17-03-17 22:10:26.948 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 59. Bubbles during last 5000 ms interval: R1=1, R2=1, Total=2. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=945, R2=968, Total=1913. Warn if over 250 bubbles per interval.
17-03-17 22:10:26.978 -07 000000478 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 60, FrontChillerTemperature: 3.960826,
17-03-17 22:10:27.268 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:10:27.298 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:10:27.298 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 22:10:27.298 -07 000000610 INF: =================== Cycle #60 ===================
17-03-17 22:10:27.298 -07 000000012 INF: WaitCommand(10000) start
17-03-17 22:10:27.298 -07 000000482 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 22:10:27.298 -07 000000482 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 22:10:28.518 -07 000000482 INF: AsyncDelayTimer waited 1214ms
17-03-17 22:10:28.518 -07 000000482 INF: LanePump: Xmit /1?\r
17-03-17 22:10:28.548 -07 000000482 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 22:10:28.548 -07 000000482 INF: LanePump: Current Position of Pump is: 1110
17-03-17 22:10:28.678 -07 000000482 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 22:10:28.718 -07 000000482 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:10:30.248 -07 000000482 INF: LanePump: Xmit /1Q\r
17-03-17 22:10:30.278 -07 000000482 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:10:30.698 -07 000000482 INF: LanePump: Xmit /1Q\r
17-03-17 22:10:30.728 -07 000000482 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:10:30.728 -07 000000482 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-17 22:10:30.728 -07 000000482 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 22:10:30.728 -07 000000482 INF: ===================  ===================
17-03-17 22:10:31.948 -07 000000623 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:10:31.948 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 59. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=945, R2=968, Total=1913. Warn if over 250 bubbles per interval.
17-03-17 22:10:32.338 -07 000000448 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 60, FrontChillerTemperature: 3.96762,
17-03-17 22:10:36.948 -07 000000478 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:10:36.948 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 59. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=945, R2=968, Total=1913. Warn if over 250 bubbles per interval.
17-03-17 22:10:37.308 -07 000000012 INF: WaitCommand(10000) end
17-03-17 22:10:37.308 -07 000000610 INF: =================== Cycle #60, Imaging ===================
17-03-17 22:10:37.308 -07 000000610 INF: Imaging Cycle 60: ScanTilesCommand Cycle 60 time start.
17-03-17 22:10:37.308 -07 000000610 INF: ReagentValve: Go to position 24 (Plug) - Start of ScanTilesCommand
17-03-17 22:10:37.308 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 22:10:37.338 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 22:10:37.338 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 24. Moving 3 positions.
17-03-17 22:10:37.338 -07 000000610 INF: ReagentValve: Xmit -18\r
17-03-17 22:10:37.638 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 22:10:37.658 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-17 22:10:37.658 -07 000000610 INF: ReagentValve: Move- from 3 to 24 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-17 22:10:37.698 -07 000000623 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 60, FrontChillerTemperature: 4.028963,
17-03-17 22:10:37.708 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 22:10:37.728 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-17 22:10:37.728 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:10:37.728 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:10:37.728 -07 000000478 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms start.
17-03-17 22:10:37.728 -07 000000478 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:10:37.738 -07 000000478 INF: FPGA: Xmit EXLED1ON\n [RedLED]
17-03-17 22:10:37.738 -07 000000459 INF: FPGA: Recv EXLED1ON 
17-03-17 22:10:37.748 -07 000000478 INF: FPGA: 'EXLED1ON' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 22:10:37.748 -07 000000478 INF: FPGA: Xmit EXLED1ADCR\n [RedLED]
17-03-17 22:10:37.748 -07 000000424 INF: FPGA: Recv EXLED1ADCR 23012
17-03-17 22:10:37.758 -07 000000478 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:10:37.758 -07 000000478 INF: RedLED: Using Red data: Photodiode ADC 23012 --> 7.4 mW (old method), or 204.0 mW (new method). Difference = 196.7 mW
17-03-17 22:10:37.758 -07 000000478 INF: FPGA: Xmit EXLED1OFF\n [RedLED]
17-03-17 22:10:37.758 -07 000000438 INF: FPGA: Recv EXLED1OFF 
17-03-17 22:10:37.768 -07 000000478 INF: FPGA: 'EXLED1OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:10:37.768 -07 000000478 INF: RedLED: LED was on for 20 ms
17-03-17 22:10:37.768 -07 000000478 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms end. Duration was 35 ms.
17-03-17 22:10:37.768 -07 000000478 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms start.
17-03-17 22:10:37.768 -07 000000478 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:10:37.768 -07 000000478 INF: FPGA: Xmit EXLED2ON\n [GreenLED]
17-03-17 22:10:37.768 -07 000000569 INF: FPGA: Recv EXLED2ON 
17-03-17 22:10:37.778 -07 000000478 INF: FPGA: 'EXLED2ON' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:10:37.778 -07 000000478 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-17 22:10:37.778 -07 000000482 INF: FPGA: Recv EXLED1ADCR 2094
17-03-17 22:10:37.788 -07 000000478 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:10:37.788 -07 000000478 INF: GreenLED: Using Green data: Photodiode ADC 2094 --> 0.9 mW (old method), or 182.0 mW (new method). Difference = 181.1 mW
17-03-17 22:10:37.788 -07 000000478 INF: FPGA: Xmit EXLED2OFF\n [GreenLED]
17-03-17 22:10:37.788 -07 000000502 INF: FPGA: Recv EXLED2OFF 
17-03-17 22:10:37.798 -07 000000478 INF: FPGA: 'EXLED2OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:10:37.798 -07 000000478 INF: GreenLED: LED was on for 20 ms
17-03-17 22:10:37.798 -07 000000478 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms end. Duration was 28 ms.
17-03-17 22:10:37.798 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-17 22:10:37.798 -07 000000459 INF: FPGA: Recv EMCUR 
17-03-17 22:10:37.808 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:10:37.808 -07 000000610 INF: FPGA: Xmit EMOUT 20 70\n [Compensator]
17-03-17 22:10:38.308 -07 000000424 INF: FPGA: Recv EMOUT
17-03-17 22:10:38.308 -07 000000610 INF: FPGA: 'EMOUT 20 70' command took 0 ms to send, 493 ms to get response, and 502 ms overall
17-03-17 22:10:38.308 -07 000000610 INF: FPGA: Xmit EMCUR 75\n [Compensator]
17-03-17 22:10:38.308 -07 000000627 INF: FPGA: Recv EMCUR 
17-03-17 22:10:38.318 -07 000000610 INF: FPGA: 'EMCUR 75' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:10:38.318 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 22:10:38.318 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 75.380859375, Z-Position -0.127576287519183. ------
17-03-17 22:10:38.318 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:10:38.318 -07 000000569 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.17956 mm
17-03-17 22:10:38.318 -07 000000569 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:10:38.328 -07 000000012 INF: Z Motor: Entering MoveAbsStepped (DAC = 39225, sync = True, waitForSettling = False)
17-03-17 22:10:38.328 -07 000000012 INF: Z Motor: Moving to -0.179561 mm, started at -0.127576 mm, distance = -51.98 um
17-03-17 22:10:38.328 -07 000000623 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:10:38.328 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 22:10:38.328 -07 000000502 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:10:38.328 -07 000000478 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-17 22:10:38.328 -07 000000478 INF: Y Motor: Moving to 59.9126 mm, started at 75.3809 mm, delta = -15.4683 mm
17-03-17 22:10:38.338 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:10:38.338 -07 000000482 INF: FPGA: Recv YRDPOS 154381
17-03-17 22:10:38.348 -07 000000012 INF: FPGA: Xmit ZDACW 39225\n [Z Motor]
17-03-17 22:10:38.348 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-17 22:10:38.348 -07 000000478 INF: Y Motor: Encoder = 154381 = motor step 120610.2 = 75.3813 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:10:38.348 -07 000000459 INF: FPGA: Recv ZDACW
17-03-17 22:10:38.348 -07 000000478 INF: Y Motor: Last commanded position = 75.3806 mm (120608.9 steps), delta from last commanded position = -15.4680 mm (-24748.8 steps). UsingTableMove = False
17-03-17 22:10:38.348 -07 000000478 INF: Y Motor: Moving to 122701 encoder counts
17-03-17 22:10:38.358 -07 000000012 INF: FPGA: 'ZDACW 39225' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-17 22:10:38.358 -07 000000012 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:10:38.358 -07 000000438 INF: FPGA: Recv ZDACR 39225
17-03-17 22:10:38.368 -07 000000478 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-17 22:10:38.368 -07 000000012 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:10:38.368 -07 000000012 INF: Z Motor: MoveAbsStepped took 39 ms (did NOT wait for settling yet))
17-03-17 22:10:38.528 -07 000000424 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:10:38.528 -07 000000502 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-17 22:10:40.048 -07 000000012 INF: FPGA: Recv YMVTO 122703 24777
17-03-17 22:10:40.048 -07 000000478 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1676 ms to get response, and 1703 ms overall
17-03-17 22:10:40.048 -07 000000478 INF: Y Motor: Position error before settling = 2 encoder counts (0.001 mm)
17-03-17 22:10:40.048 -07 000000478 INF: Y Motor: To move from 75.381 to 59.913 (-15.468 mm) should take 24750 steps, but required 24777 steps (15.486 mm). Slippage = 0.017 mm (0.00%).
17-03-17 22:10:40.048 -07 000000478 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1703 ms, distance = 15.468 mm, average velocity = 9.083 mm/sec
17-03-17 22:10:41.948 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:10:41.948 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 59. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=945, R2=968, Total=1913. Warn if over 250 bubbles per interval.
17-03-17 22:10:42.898 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:10:42.898 -07 000000627 INF: FPGA: Recv YRDPOS 122696
17-03-17 22:10:42.908 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:10:42.908 -07 000000478 INF: Y Motor: Encoder = 122696 = motor step 95856.3 = 59.9102 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:10:42.928 -07 000000478 INF: Y Motor: After move to 59.912609, error = -0.002453, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:10:42.928 -07 000000478 INF: Y Motor: Position error after settling = -5 encoder counts (-0.002 mm), Delta during settling = -7 counts (-0.003 mm)
17-03-17 22:10:42.928 -07 000000478 INF: Y Motor: Moved to 59.9102 after 4603 ms
17-03-17 22:10:42.928 -07 000000569 INF: Z Motor: EndOfMoveAbsStepped: target = -0.179561 mm (DAC = 39225)
17-03-17 22:10:42.928 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:10:42.938 -07 000000482 INF: FPGA: Recv ZSGSRD 37239
17-03-17 22:10:42.938 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 22:10:42.938 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:10:42.938 -07 000000482 INF: FPGA: Recv ZSGSRD 37247
17-03-17 22:10:42.948 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:10:42.948 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:10:42.948 -07 000000482 INF: FPGA: Recv ZSGSRD 37244
17-03-17 22:10:42.958 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:10:42.958 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:10:42.958 -07 000000478 INF: FPGA: Recv ZSGSRD 37241
17-03-17 22:10:42.968 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:10:42.968 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:10:42.968 -07 000000478 INF: FPGA: Recv ZSGSRD 37241
17-03-17 22:10:42.978 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:10:42.978 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:10:42.978 -07 000000482 INF: FPGA: Recv ZSGSRD 37239
17-03-17 22:10:42.988 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:10:42.988 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:10:42.988 -07 000000482 INF: FPGA: Recv ZSGSRD 37233
17-03-17 22:10:42.998 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:10:42.998 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:10:42.998 -07 000000478 INF: FPGA: Recv ZSGSRD 37244
17-03-17 22:10:43.008 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:10:43.008 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:10:43.008 -07 000000478 INF: FPGA: Recv ZSGSRD 37238
17-03-17 22:10:43.018 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:10:43.018 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:10:43.018 -07 000000478 INF: FPGA: Recv ZSGSRD 37239
17-03-17 22:10:43.028 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:10:43.028 -07 000000569 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:10:43.028 -07 000000478 INF: FPGA: Recv ZPIEZORD 33679
17-03-17 22:10:43.038 -07 000000569 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:10:43.038 -07 000000569 INF: Z Motor: Piezo is near 51.9 V (nominally 0 to 100 V), expect near 59.9 V, since DAC is at 5.985 V. Piezo Error = -7.9 V.
17-03-17 22:10:43.038 -07 000000569 INF: Z Motor: ReadAdcAverage: Commanded Z = -179.6 um, Read 10 ADC samples: Avg = 37240 (-178.7 uncal um), Error = 0.9 uncal um, Median = 37240 (-178.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 37233 (-178.6 uncal um), Max = 37247 (-178.7 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 22:10:43.038 -07 000000569 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37240, posNoise = 7, negNoise = 7
17-03-17 22:10:43.038 -07 000000569 INF: Z Motor: After move to -0.179561, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:10:43.038 -07 000000569 INF: Z Motor: Settle wait time = 4607 ms, measure time = 102 ms (allowed 150 ms), total time = 4709 ms
17-03-17 22:10:43.038 -07 000000569 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 22:10:43.058 -07 000000478 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 60, FrontChillerTemperature: 4.016692,
17-03-17 22:10:43.088 -07 000000569 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4762 ms
17-03-17 22:10:43.088 -07 000000569 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:10:43.088 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:10:43.088 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:10:43.088 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:10:43.088 -07 000000478 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:10:43.088 -07 000000459 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:10:43.088 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:10:43.088 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:10:43.088 -07 000000459 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-17 22:10:43.108 -07 000000459 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 20 ms.
17-03-17 22:10:43.108 -07 000000459 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:10:43.118 -07 000000459 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-17 22:10:43.118 -07 000000459 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:10:43.128 -07 000000459 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 22:10:43.128 -07 000000459 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 39 ms.
17-03-17 22:10:43.128 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:10:43.178 -07 000000502 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:10:43.378 -07 000000502 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:10:43.378 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:10:43.378 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:10:43.378 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 22:10:43.418 -07 000000448 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:10:43.418 -07 000000502 INF: FPGA: Recv CAMSNAP
17-03-17 22:10:43.418 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 274 ms to get response, and 285 ms overall
17-03-17 22:10:43.508 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 125 ms.
17-03-17 22:10:43.508 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:10:43.508 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:10:43.508 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-17 22:10:43.518 -07 000000623 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:10:43.518 -07 000000627 INF: Image SNR check: start
17-03-17 22:10:43.518 -07 000000482 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:10:43.528 -07 000000623 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:10:43.528 -07 000000623 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:10:43.528 -07 000000627 INF: Image SNR check: pass  [peak (Max-Min)=59.81]
17-03-17 22:10:43.528 -07 000000627 INF: Autofocus start
17-03-17 22:10:43.528 -07 000000627 INF: MeasureProfile start
17-03-17 22:10:43.538 -07 000000627 INF: MeasureProfile done
17-03-17 22:10:43.538 -07 000000627 INF: X=-16  Z correction [um]=-0.1496812
17-03-17 22:10:43.538 -07 000000627 INF: Autofocus finished
17-03-17 22:10:43.728 -07 000000012 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:10:43.728 -07 000000623 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:10:43.728 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.91015625, Z-position -0.179561012170313. ----------
17-03-17 22:10:43.728 -07 000000610 INF: Cycle	60	Tile	1	Exposure Settings		A	447	G	215	T	215	C	447
17-03-17 22:10:43.738 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37705, sync = True, waitForSettling = True)
17-03-17 22:10:43.738 -07 000000610 INF: Z Motor: Moving to -0.172602 mm, started at -0.179561 mm, distance = 6.96 um
17-03-17 22:10:43.738 -07 000000610 INF: FPGA: Xmit ZDACW 37705\n [Z Motor]
17-03-17 22:10:43.738 -07 000000424 INF: FPGA: Recv ZDACW
17-03-17 22:10:43.748 -07 000000610 INF: FPGA: 'ZDACW 37705' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:10:43.748 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:10:43.748 -07 000000424 INF: FPGA: Recv ZDACR 37705
17-03-17 22:10:43.758 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:10:43.758 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:10:43.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:10:43.908 -07 000000424 INF: FPGA: Recv ZSGSRD 36157
17-03-17 22:10:43.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:10:43.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:10:43.928 -07 000000448 INF: FPGA: Recv ZSGSRD 36157
17-03-17 22:10:43.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:10:43.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:10:43.938 -07 000000012 INF: FPGA: Recv ZSGSRD 36155
17-03-17 22:10:43.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:10:43.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:10:43.948 -07 000000012 INF: FPGA: Recv ZSGSRD 36163
17-03-17 22:10:43.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:10:43.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:10:43.958 -07 000000012 INF: FPGA: Recv ZSGSRD 36162
17-03-17 22:10:43.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:10:43.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:10:43.968 -07 000000502 INF: FPGA: Recv ZSGSRD 36153
17-03-17 22:10:43.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:10:43.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:10:43.978 -07 000000502 INF: FPGA: Recv ZSGSRD 36163
17-03-17 22:10:43.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:10:43.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:10:43.988 -07 000000502 INF: FPGA: Recv ZSGSRD 36160
17-03-17 22:10:43.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:10:43.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:10:43.998 -07 000000502 INF: FPGA: Recv ZSGSRD 36153
17-03-17 22:10:44.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:10:44.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:10:44.008 -07 000000012 INF: FPGA: Recv ZSGSRD 36159
17-03-17 22:10:44.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:10:44.018 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:10:44.018 -07 000000623 INF: FPGA: Recv ZPIEZORD 32251
17-03-17 22:10:44.028 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:10:44.028 -07 000000610 INF: Z Motor: Piezo is near 48.9 V (nominally 0 to 100 V), expect near 57.5 V, since DAC is at 5.753 V. Piezo Error = -8.6 V.
17-03-17 22:10:44.028 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.6 um, Read 10 ADC samples: Avg = 36158 (-171.7 uncal um), Error = 0.9 uncal um, Median = 36158 (-171.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 36153 (-171.7 uncal um), Max = 36163 (-171.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 22:10:44.028 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36158, posNoise = 5, negNoise = 5
17-03-17 22:10:44.028 -07 000000610 INF: Z Motor: After move to -0.172602, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:10:44.028 -07 000000610 INF: Z Motor: MoveAbsStepped took 291 ms)
17-03-17 22:10:44.028 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:10:44.028 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:10:44.028 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:10:44.028 -07 000000482 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:10:44.028 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:10:44.028 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:10:44.028 -07 000000478 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:10:44.028 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:10:44.028 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:10:44.028 -07 000000569 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-17 22:10:44.028 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:10:44.028 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:10:44.028 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:10:44.038 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:10:44.048 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 22:10:44.048 -07 000000478 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 22:10:44.048 -07 000000569 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 22 ms.
17-03-17 22:10:44.058 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:10:44.058 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:10:44.058 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:10:44.068 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 12 ms.
17-03-17 22:10:44.068 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 42 ms.
17-03-17 22:10:44.068 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 447 447 215 215 37882 150\n [Camera]
17-03-17 22:10:44.268 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:10:44.718 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 639
17-03-17 22:10:44.718 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 639
17-03-17 22:10:44.718 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:10:44.718 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 639
17-03-17 22:10:44.718 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 639
17-03-17 22:10:44.718 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:10:44.728 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:10:44.728 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 22:10:44.738 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:10:44.738 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1410451104, 0x0, 418435064) start.
17-03-17 22:10:44.908 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37882 832
17-03-17 22:10:45.058 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP turning grn on 982
17-03-17 22:10:45.128 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 395 ms.
17-03-17 22:10:45.128 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 22:10:45.128 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:10:45.128 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:10:45.128 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-17 22:10:45.138 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1410451104, 0x0, 418435064) end. Duration was 398 ms.
17-03-17 22:10:45.138 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 22:10:45.138 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:10:45.138 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:10:45.148 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 421 ms.
17-03-17 22:10:45.278 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1197
17-03-17 22:10:45.278 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1197
17-03-17 22:10:45.278 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:10:45.278 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1197
17-03-17 22:10:45.278 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1197
17-03-17 22:10:45.278 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:10:45.518 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP 1390
17-03-17 22:10:45.518 -07 000000438 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:10:45.518 -07 000000610 INF: FPGA: 'CAMDBLSNAP 447 447 215 215 37882 150' command took 2 ms to send, 1434 ms to get response, and 1445 ms overall
17-03-17 22:10:45.518 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:10:45.518 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 22:10:45.518 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 22:10:45.518 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.91015625, Z-Position -0.172610014632928. ------
17-03-17 22:10:45.528 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:10:45.528 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 589594896, 0x0, 418435064) start.
17-03-17 22:10:45.528 -07 000000627 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:10:45.528 -07 000000569 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.17887 mm
17-03-17 22:10:45.528 -07 000000569 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:10:45.528 -07 000000424 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-17 22:10:45.528 -07 000000424 INF: Y Motor: Moving to 60.7426 mm, started at 59.9102 mm, delta = 0.8325 mm
17-03-17 22:10:45.528 -07 000000623 INF: Z Motor: Entering MoveAbsStepped (DAC = 39073, sync = True, waitForSettling = False)
17-03-17 22:10:45.528 -07 000000623 INF: Z Motor: Moving to -0.178865 mm, started at -0.172610 mm, distance = -6.25 um
17-03-17 22:10:45.528 -07 000000448 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:10:45.538 -07 000000627 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:10:45.538 -07 000000623 INF: FPGA: Xmit ZDACW 39073\n [Z Motor]
17-03-17 22:10:45.538 -07 000000448 INF: FPGA: Recv ZDACW
17-03-17 22:10:45.548 -07 000000623 INF: FPGA: 'ZDACW 39073' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 22:10:45.548 -07 000000623 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:10:45.548 -07 000000012 INF: FPGA: Recv ZDACR 39073
17-03-17 22:10:45.558 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:10:45.558 -07 000000623 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:10:45.558 -07 000000623 INF: Z Motor: MoveAbsStepped took 23 ms (did NOT wait for settling yet))
17-03-17 22:10:45.558 -07 000000012 INF: FPGA: Recv YRDPOS 122696
17-03-17 22:10:45.568 -07 000000627 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:10:45.568 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 33 ms overall
17-03-17 22:10:45.568 -07 000000424 INF: Y Motor: Encoder = 122696 = motor step 95856.3 = 59.9102 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:10:45.568 -07 000000424 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:10:45.568 -07 000000424 INF: Y Motor: Moving 1332 steps2
17-03-17 22:10:45.578 -07 000000424 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:10:45.768 -07 000000618 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:10:45.768 -07 000000627 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 233 ms overall
17-03-17 22:10:45.918 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 399 ms.
17-03-17 22:10:45.918 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 22:10:45.918 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:10:45.918 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 589594896, 0x0, 418435064) end. Duration was 396 ms.
17-03-17 22:10:45.918 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 22:10:45.918 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:10:45.928 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:10:45.928 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 647 ms.
17-03-17 22:10:45.928 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:10:45.928 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 651 ms.
17-03-17 22:10:45.948 -07 000000448 INF: FPGA: Recv YMVTILE
17-03-17 22:10:45.948 -07 000000424 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-17 22:10:45.988 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:10:45.988 -07 000000502 INF: FPGA: Recv YRDPOS 124380
17-03-17 22:10:45.998 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:10:45.998 -07 000000424 INF: Y Motor: Encoder = 124380 = motor step 97171.9 = 60.7324 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:10:45.998 -07 000000424 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-17 22:10:45.998 -07 000000424 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.832 mm, average velocity = 2.151 mm/sec
17-03-17 22:10:46.948 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:10:46.948 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:10:46.948 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 59. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=945, R2=968, Total=1913. Warn if over 250 bubbles per interval.
17-03-17 22:10:46.948 -07 000000623 INF: FPGA: Recv YRDPOS 124381
17-03-17 22:10:46.958 -07 000000424 INF: FPGA: 'YRDPOS' command took 1 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:10:46.958 -07 000000424 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:10:46.978 -07 000000424 INF: Y Motor: After move to 60.742607, error = -0.009697, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:10:46.978 -07 000000424 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 22:10:46.978 -07 000000424 INF: Y Motor: Moved to 60.7329 after 1448 ms (table move)
17-03-17 22:10:46.978 -07 000000569 INF: Z Motor: EndOfMoveAbsStepped: target = -0.178865 mm (DAC = 39073)
17-03-17 22:10:46.978 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:10:46.988 -07 000000424 INF: FPGA: Recv ZSGSRD 37139
17-03-17 22:10:46.988 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-17 22:10:46.988 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:10:46.988 -07 000000424 INF: FPGA: Recv ZSGSRD 37125
17-03-17 22:10:46.998 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:10:46.998 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:10:46.998 -07 000000482 INF: FPGA: Recv ZSGSRD 37133
17-03-17 22:10:47.008 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:10:47.008 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:10:47.008 -07 000000482 INF: FPGA: Recv ZSGSRD 37135
17-03-17 22:10:47.018 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:10:47.018 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:10:47.018 -07 000000482 INF: FPGA: Recv ZSGSRD 37133
17-03-17 22:10:47.028 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:10:47.028 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:10:47.028 -07 000000627 INF: FPGA: Recv ZSGSRD 37138
17-03-17 22:10:47.038 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:10:47.038 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:10:47.038 -07 000000627 INF: FPGA: Recv ZSGSRD 37130
17-03-17 22:10:47.048 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:10:47.048 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:10:47.048 -07 000000627 INF: FPGA: Recv ZSGSRD 37129
17-03-17 22:10:47.058 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:10:47.058 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:10:47.058 -07 000000627 INF: FPGA: Recv ZSGSRD 37134
17-03-17 22:10:47.068 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:10:47.068 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:10:47.068 -07 000000627 INF: FPGA: Recv ZSGSRD 37128
17-03-17 22:10:47.078 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:10:47.078 -07 000000569 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:10:47.078 -07 000000627 INF: FPGA: Recv ZPIEZORD 33553
17-03-17 22:10:47.088 -07 000000569 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:10:47.088 -07 000000569 INF: Z Motor: Piezo is near 51.7 V (nominally 0 to 100 V), expect near 59.6 V, since DAC is at 5.962 V. Piezo Error = -7.9 V.
17-03-17 22:10:47.088 -07 000000569 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.9 um, Read 10 ADC samples: Avg = 37132 (-178.0 uncal um), Error = 0.9 uncal um, Median = 37133 (-178.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 37125 (-177.9 uncal um), Max = 37139 (-178.0 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 22:10:47.088 -07 000000569 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37132, posNoise = 7, negNoise = 7
17-03-17 22:10:47.088 -07 000000569 INF: Z Motor: After move to -0.178865, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:10:47.088 -07 000000569 INF: Z Motor: Settle wait time = 1452 ms, measure time = 101 ms (allowed 150 ms), total time = 1553 ms
17-03-17 22:10:47.088 -07 000000569 INF: Z Motor: Waiting extra 49 ms after reading position to reach expected total of 150 ms
17-03-17 22:10:47.138 -07 000000569 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1606 ms
17-03-17 22:10:47.138 -07 000000569 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:10:47.138 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:10:47.138 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:10:47.138 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:10:47.138 -07 000000448 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:10:47.138 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:10:47.138 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:10:47.138 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:10:47.138 -07 000000448 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:10:47.148 -07 000000448 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:10:47.148 -07 000000448 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:10:47.158 -07 000000448 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 22:10:47.158 -07 000000448 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-17 22:10:47.158 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:10:47.198 -07 000000438 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:10:47.398 -07 000000438 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:10:47.398 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:10:47.398 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:10:47.408 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1422920864, 0x0, 559484976) start.
17-03-17 22:10:47.438 -07 000000478 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:10:47.438 -07 000000623 INF: FPGA: Recv CAMSNAP
17-03-17 22:10:47.438 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 285 ms overall
17-03-17 22:10:47.528 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1422920864, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 22:10:47.528 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:10:47.528 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:10:47.528 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 22:10:47.638 -07 000000478 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:10:47.638 -07 000000627 INF: Autofocus start
17-03-17 22:10:47.638 -07 000000627 INF: MeasureProfile start
17-03-17 22:10:47.638 -07 000000459 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:10:47.648 -07 000000478 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 22:10:47.648 -07 000000478 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:10:47.648 -07 000000627 INF: MeasureProfile done
17-03-17 22:10:47.648 -07 000000627 INF: X=32  Z correction [um]=0.09220707
17-03-17 22:10:47.648 -07 000000627 INF: Autofocus finished
17-03-17 22:10:47.848 -07 000000459 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:10:47.848 -07 000000478 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 204 ms overall
17-03-17 22:10:47.848 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.73291015625, Z-position -0.178867197259003. ----------
17-03-17 22:10:47.858 -07 000000610 INF: Cycle	60	Tile	2	Exposure Settings		A	447	G	215	T	215	C	447
17-03-17 22:10:47.858 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37606, sync = True, waitForSettling = True)
17-03-17 22:10:47.858 -07 000000610 INF: Z Motor: Moving to -0.172149 mm, started at -0.178867 mm, distance = 6.72 um
17-03-17 22:10:47.858 -07 000000610 INF: FPGA: Xmit ZDACW 37606\n [Z Motor]
17-03-17 22:10:47.858 -07 000000623 INF: FPGA: Recv ZDACW
17-03-17 22:10:47.868 -07 000000610 INF: FPGA: 'ZDACW 37606' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:10:47.868 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:10:47.868 -07 000000618 INF: FPGA: Recv ZDACR 37606
17-03-17 22:10:47.878 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:10:47.878 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:10:48.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:10:48.028 -07 000000623 INF: FPGA: Recv ZSGSRD 36088
17-03-17 22:10:48.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:10:48.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:10:48.038 -07 000000569 INF: FPGA: Recv ZSGSRD 36087
17-03-17 22:10:48.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:10:48.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:10:48.048 -07 000000478 INF: FPGA: Recv ZSGSRD 36093
17-03-17 22:10:48.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:10:48.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:10:48.058 -07 000000623 INF: FPGA: Recv ZSGSRD 36082
17-03-17 22:10:48.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:10:48.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:10:48.068 -07 000000627 INF: FPGA: Recv ZSGSRD 36084
17-03-17 22:10:48.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:10:48.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:10:48.078 -07 000000478 INF: FPGA: Recv ZSGSRD 36088
17-03-17 22:10:48.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:10:48.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:10:48.088 -07 000000569 INF: FPGA: Recv ZSGSRD 36092
17-03-17 22:10:48.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:10:48.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:10:48.108 -07 000000478 INF: FPGA: Recv ZSGSRD 36086
17-03-17 22:10:48.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:10:48.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:10:48.118 -07 000000627 INF: FPGA: Recv ZSGSRD 36085
17-03-17 22:10:48.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:10:48.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:10:48.128 -07 000000478 INF: FPGA: Recv ZSGSRD 36091
17-03-17 22:10:48.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:10:48.138 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:10:48.138 -07 000000569 INF: FPGA: Recv ZPIEZORD 32152
17-03-17 22:10:48.148 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:10:48.148 -07 000000610 INF: Z Motor: Piezo is near 48.7 V (nominally 0 to 100 V), expect near 57.4 V, since DAC is at 5.738 V. Piezo Error = -8.7 V.
17-03-17 22:10:48.148 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.1 um, Read 10 ADC samples: Avg = 36088 (-171.3 uncal um), Error = 0.9 uncal um, Median = 36088 (-171.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36082 (-171.2 uncal um), Max = 36093 (-171.3 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 22:10:48.148 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36088, posNoise = 5, negNoise = 6
17-03-17 22:10:48.148 -07 000000610 INF: Z Motor: After move to -0.172149, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:10:48.148 -07 000000610 INF: Z Motor: MoveAbsStepped took 288 ms)
17-03-17 22:10:48.148 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:10:48.148 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:10:48.148 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:10:48.148 -07 000000478 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:10:48.148 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:10:48.148 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:10:48.148 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:10:48.148 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:10:48.148 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:10:48.148 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:10:48.148 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:10:48.148 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:10:48.158 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 22:10:48.158 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:10:48.158 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:10:48.158 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:10:48.168 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-17 22:10:48.168 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 18 ms.
17-03-17 22:10:48.168 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-17 22:10:48.168 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 22:10:48.178 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 447 447 215 215 37783 150\n [Camera]
17-03-17 22:10:48.368 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:10:48.418 -07 000000478 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 60, FrontChillerTemperature: 4.046637,
17-03-17 22:10:48.818 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 639
17-03-17 22:10:48.818 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 639
17-03-17 22:10:48.818 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:10:48.818 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:10:48.818 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 22:10:48.828 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 639
17-03-17 22:10:48.828 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 639
17-03-17 22:10:48.828 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:10:48.828 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:10:48.828 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1479623496, 0x0, 418435064) start.
17-03-17 22:10:49.018 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37783 832
17-03-17 22:10:49.158 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP turning grn on 982
17-03-17 22:10:49.218 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 398 ms.
17-03-17 22:10:49.218 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 22:10:49.218 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:10:49.218 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1479623496, 0x0, 418435064) end. Duration was 395 ms.
17-03-17 22:10:49.218 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 22:10:49.218 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:10:49.228 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:10:49.228 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 22:10:49.228 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:10:49.228 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-17 22:10:49.378 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1197
17-03-17 22:10:49.378 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1197
17-03-17 22:10:49.378 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:10:49.378 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:10:49.378 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-17 22:10:49.378 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1197
17-03-17 22:10:49.378 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1197
17-03-17 22:10:49.378 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:10:49.378 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:10:49.378 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-17 22:10:49.568 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP 1390
17-03-17 22:10:49.568 -07 000000618 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:10:49.568 -07 000000610 INF: FPGA: 'CAMDBLSNAP 447 447 215 215 37783 150' command took 2 ms to send, 1387 ms to get response, and 1397 ms overall
17-03-17 22:10:49.568 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 22:10:49.568 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.73291015625, Z-Position -0.172160319783004. ------
17-03-17 22:10:49.688 -07 000000618 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.17844 mm
17-03-17 22:10:49.688 -07 000000618 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:10:49.688 -07 000000424 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-17 22:10:49.688 -07 000000424 INF: Y Motor: Moving to 61.5726 mm, started at 60.7329 mm, delta = 0.8397 mm
17-03-17 22:10:49.688 -07 000000478 INF: Z Motor: Entering MoveAbsStepped (DAC = 38980, sync = True, waitForSettling = False)
17-03-17 22:10:49.688 -07 000000478 INF: Z Motor: Moving to -0.178439 mm, started at -0.172160 mm, distance = -6.28 um
17-03-17 22:10:49.698 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:10:49.698 -07 000000438 INF: FPGA: Recv YRDPOS 124381
17-03-17 22:10:49.708 -07 000000627 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:10:49.708 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 22:10:49.708 -07 000000424 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:10:49.708 -07 000000424 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:10:49.708 -07 000000424 INF: Y Motor: Moving 1344 steps-21
17-03-17 22:10:49.708 -07 000000482 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:10:49.718 -07 000000478 INF: FPGA: Xmit ZDACW 38980\n [Z Motor]
17-03-17 22:10:49.718 -07 000000627 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 22:10:49.718 -07 000000482 INF: FPGA: Recv ZDACW
17-03-17 22:10:49.728 -07 000000478 INF: FPGA: 'ZDACW 38980' command took 0 ms to send, 0 ms to get response, and 32 ms overall
17-03-17 22:10:49.738 -07 000000424 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:10:49.748 -07 000000627 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:10:49.758 -07 000000478 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:10:49.758 -07 000000502 INF: FPGA: Recv ZDACR 38980
17-03-17 22:10:49.768 -07 000000478 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 39 ms overall
17-03-17 22:10:49.768 -07 000000478 INF: Z Motor: MoveAbsStepped took 73 ms (did NOT wait for settling yet))
17-03-17 22:10:49.778 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 398 ms.
17-03-17 22:10:49.778 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 22:10:49.778 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:10:49.778 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 397 ms.
17-03-17 22:10:49.778 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 22:10:49.778 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:10:49.788 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:10:49.788 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-17 22:10:49.788 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-17 22:10:49.788 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-17 22:10:49.948 -07 000000502 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:10:49.948 -07 000000627 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 233 ms overall
17-03-17 22:10:50.108 -07 000000012 INF: FPGA: Recv YMVTILE
17-03-17 22:10:50.108 -07 000000424 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 407 ms overall
17-03-17 22:10:50.148 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:10:50.148 -07 000000627 INF: FPGA: Recv YRDPOS 126082
17-03-17 22:10:50.158 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:10:50.158 -07 000000424 INF: Y Motor: Encoder = 126082 = motor step 98501.6 = 61.5635 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:10:50.158 -07 000000424 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-17 22:10:50.158 -07 000000424 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 407 ms, distance = 0.840 mm, average velocity = 2.063 mm/sec
17-03-17 22:10:51.108 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:10:51.108 -07 000000623 INF: FPGA: Recv YRDPOS 126082
17-03-17 22:10:51.118 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:10:51.118 -07 000000424 INF: Y Motor: Encoder = 126082 = motor step 98501.6 = 61.5635 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:10:51.138 -07 000000424 INF: Y Motor: After move to 61.572609, error = -0.009132, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:10:51.138 -07 000000424 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:10:51.138 -07 000000424 INF: Y Motor: Moved to 61.5635 after 1449 ms (table move)
17-03-17 22:10:51.138 -07 000000618 INF: Z Motor: EndOfMoveAbsStepped: target = -0.178439 mm (DAC = 38980)
17-03-17 22:10:51.138 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:10:51.148 -07 000000424 INF: FPGA: Recv ZSGSRD 37062
17-03-17 22:10:51.158 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:10:51.158 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:10:51.158 -07 000000424 INF: FPGA: Recv ZSGSRD 37065
17-03-17 22:10:51.168 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:10:51.168 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:10:51.168 -07 000000424 INF: FPGA: Recv ZSGSRD 37066
17-03-17 22:10:51.178 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:10:51.178 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:10:51.178 -07 000000424 INF: FPGA: Recv ZSGSRD 37070
17-03-17 22:10:51.188 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:10:51.188 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:10:51.188 -07 000000424 INF: FPGA: Recv ZSGSRD 37069
17-03-17 22:10:51.198 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:10:51.198 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:10:51.198 -07 000000424 INF: FPGA: Recv ZSGSRD 37074
17-03-17 22:10:51.208 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:10:51.208 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:10:51.208 -07 000000424 INF: FPGA: Recv ZSGSRD 37066
17-03-17 22:10:51.218 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:10:51.218 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:10:51.218 -07 000000424 INF: FPGA: Recv ZSGSRD 37063
17-03-17 22:10:51.228 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:10:51.228 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:10:51.228 -07 000000482 INF: FPGA: Recv ZSGSRD 37064
17-03-17 22:10:51.238 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:10:51.238 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:10:51.238 -07 000000482 INF: FPGA: Recv ZSGSRD 37067
17-03-17 22:10:51.248 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:10:51.248 -07 000000618 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:10:51.248 -07 000000482 INF: FPGA: Recv ZPIEZORD 33488
17-03-17 22:10:51.258 -07 000000618 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:10:51.258 -07 000000618 INF: Z Motor: Piezo is near 51.5 V (nominally 0 to 100 V), expect near 59.5 V, since DAC is at 5.948 V. Piezo Error = -7.9 V.
17-03-17 22:10:51.258 -07 000000618 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.4 um, Read 10 ADC samples: Avg = 37067 (-177.6 uncal um), Error = 0.9 uncal um, Median = 37066 (-177.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 37062 (-177.5 uncal um), Max = 37074 (-177.6 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 22:10:51.258 -07 000000618 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37067, posNoise = 7, negNoise = 5
17-03-17 22:10:51.258 -07 000000618 INF: Z Motor: After move to -0.178439, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:10:51.258 -07 000000618 INF: Z Motor: Settle wait time = 1452 ms, measure time = 111 ms (allowed 150 ms), total time = 1563 ms
17-03-17 22:10:51.258 -07 000000618 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-17 22:10:51.298 -07 000000618 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1606 ms
17-03-17 22:10:51.298 -07 000000618 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:10:51.298 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:10:51.298 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:10:51.298 -07 000000448 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:10:51.298 -07 000000478 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:10:51.298 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:10:51.298 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:10:51.298 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:10:51.298 -07 000000478 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:10:51.308 -07 000000478 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:10:51.308 -07 000000478 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:10:51.308 -07 000000478 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 22:10:51.308 -07 000000478 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 22:10:51.318 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:10:51.358 -07 000000569 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:10:51.558 -07 000000459 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:10:51.558 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:10:51.558 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:10:51.568 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 22:10:51.598 -07 000000569 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:10:51.598 -07 000000618 INF: FPGA: Recv CAMSNAP
17-03-17 22:10:51.598 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 284 ms overall
17-03-17 22:10:51.678 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 22:10:51.678 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:10:51.678 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:10:51.678 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 120 ms.
17-03-17 22:10:51.698 -07 000000623 INF: Autofocus start
17-03-17 22:10:51.698 -07 000000623 INF: MeasureProfile start
17-03-17 22:10:51.698 -07 000000482 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:10:51.698 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:10:51.708 -07 000000482 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:10:51.708 -07 000000482 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:10:51.708 -07 000000623 INF: MeasureProfile done
17-03-17 22:10:51.708 -07 000000623 INF: X=80  Z correction [um]=0.337546
17-03-17 22:10:51.708 -07 000000623 INF: Autofocus finished
17-03-17 22:10:51.908 -07 000000618 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:10:51.908 -07 000000482 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:10:51.908 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.5634765625, Z-position -0.178449623469788. ----------
17-03-17 22:10:51.918 -07 000000610 INF: Cycle	60	Tile	3	Exposure Settings		A	447	G	215	T	215	C	447
17-03-17 22:10:51.918 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37566, sync = True, waitForSettling = True)
17-03-17 22:10:51.918 -07 000000610 INF: Z Motor: Moving to -0.171966 mm, started at -0.178450 mm, distance = 6.48 um
17-03-17 22:10:51.918 -07 000000610 INF: FPGA: Xmit ZDACW 37566\n [Z Motor]
17-03-17 22:10:51.918 -07 000000459 INF: FPGA: Recv ZDACW
17-03-17 22:10:51.928 -07 000000610 INF: FPGA: 'ZDACW 37566' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:10:51.928 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:10:51.928 -07 000000623 INF: FPGA: Recv ZDACR 37566
17-03-17 22:10:51.938 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:10:51.938 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:10:51.948 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:10:51.948 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 59. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=945, R2=968, Total=1913. Warn if over 250 bubbles per interval.
17-03-17 22:10:52.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:10:52.088 -07 000000424 INF: FPGA: Recv ZSGSRD 36062
17-03-17 22:10:52.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:10:52.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:10:52.098 -07 000000627 INF: FPGA: Recv ZSGSRD 36056
17-03-17 22:10:52.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:10:52.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:10:52.108 -07 000000459 INF: FPGA: Recv ZSGSRD 36058
17-03-17 22:10:52.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:10:52.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:10:52.118 -07 000000502 INF: FPGA: Recv ZSGSRD 36063
17-03-17 22:10:52.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:10:52.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:10:52.128 -07 000000424 INF: FPGA: Recv ZSGSRD 36058
17-03-17 22:10:52.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:10:52.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:10:52.138 -07 000000627 INF: FPGA: Recv ZSGSRD 36062
17-03-17 22:10:52.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:10:52.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:10:52.148 -07 000000459 INF: FPGA: Recv ZSGSRD 36054
17-03-17 22:10:52.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:10:52.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:10:52.158 -07 000000424 INF: FPGA: Recv ZSGSRD 36060
17-03-17 22:10:52.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:10:52.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:10:52.168 -07 000000459 INF: FPGA: Recv ZSGSRD 36055
17-03-17 22:10:52.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:10:52.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:10:52.178 -07 000000627 INF: FPGA: Recv ZSGSRD 36055
17-03-17 22:10:52.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:10:52.188 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:10:52.188 -07 000000459 INF: FPGA: Recv ZPIEZORD 32137
17-03-17 22:10:52.198 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:10:52.198 -07 000000610 INF: Z Motor: Piezo is near 48.7 V (nominally 0 to 100 V), expect near 57.3 V, since DAC is at 5.732 V. Piezo Error = -8.7 V.
17-03-17 22:10:52.198 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.0 um, Read 10 ADC samples: Avg = 36058 (-171.1 uncal um), Error = 0.9 uncal um, Median = 36058 (-171.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 36054 (-171.1 uncal um), Max = 36063 (-171.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 22:10:52.198 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36058, posNoise = 5, negNoise = 4
17-03-17 22:10:52.198 -07 000000610 INF: Z Motor: After move to -0.171966, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:10:52.198 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 22:10:52.198 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:10:52.198 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:10:52.198 -07 000000478 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:10:52.198 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:10:52.198 -07 000000459 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:10:52.198 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:10:52.198 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:10:52.198 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:10:52.198 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:10:52.198 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:10:52.198 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:10:52.198 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:10:52.208 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 22:10:52.208 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:10:52.208 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 22:10:52.208 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:10:52.218 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-17 22:10:52.218 -07 000000459 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 18 ms.
17-03-17 22:10:52.218 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-17 22:10:52.218 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 22:10:52.218 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 447 447 215 215 37743 150\n [Camera]
17-03-17 22:10:52.418 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:10:52.868 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 641
17-03-17 22:10:52.868 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 641
17-03-17 22:10:52.868 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:10:52.878 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 641
17-03-17 22:10:52.878 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 641
17-03-17 22:10:52.878 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:10:52.878 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:10:52.878 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 22:10:52.878 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:10:52.878 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 22:10:53.058 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37743 832
17-03-17 22:10:53.208 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP turning grn on 982
17-03-17 22:10:53.258 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 22:10:53.258 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-17 22:10:53.258 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:10:53.258 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:10:53.268 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 22:10:53.268 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 385 ms.
17-03-17 22:10:53.268 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 22:10:53.268 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:10:53.268 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:10:53.268 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 22:10:53.428 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1197
17-03-17 22:10:53.428 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1197
17-03-17 22:10:53.428 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:10:53.428 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1197
17-03-17 22:10:53.428 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1197
17-03-17 22:10:53.428 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:10:53.428 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 1479623496, 0x0, 391868352) start.
17-03-17 22:10:53.428 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:10:53.428 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:10:53.428 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-17 22:10:53.618 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP 1389
17-03-17 22:10:53.618 -07 000000482 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:10:53.618 -07 000000610 INF: FPGA: 'CAMDBLSNAP 447 447 215 215 37743 150' command took 2 ms to send, 1386 ms to get response, and 1397 ms overall
17-03-17 22:10:53.618 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 22:10:53.618 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.5634765625, Z-Position -0.171967593418752. ------
17-03-17 22:10:53.628 -07 000000482 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.17831 mm
17-03-17 22:10:53.628 -07 000000482 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:10:53.628 -07 000000012 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:10:53.628 -07 000000569 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-17 22:10:53.628 -07 000000569 INF: Y Motor: Moving to 62.4026 mm, started at 61.5635 mm, delta = 0.8391 mm
17-03-17 22:10:53.628 -07 000000618 INF: Z Motor: Entering MoveAbsStepped (DAC = 38952, sync = True, waitForSettling = False)
17-03-17 22:10:53.628 -07 000000618 INF: Z Motor: Moving to -0.178311 mm, started at -0.171968 mm, distance = -6.34 um
17-03-17 22:10:53.628 -07 000000623 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:10:53.638 -07 000000012 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:10:53.638 -07 000000618 INF: FPGA: Xmit ZDACW 38952\n [Z Motor]
17-03-17 22:10:53.638 -07 000000424 INF: FPGA: Recv ZDACW
17-03-17 22:10:53.648 -07 000000618 INF: FPGA: 'ZDACW 38952' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 22:10:53.648 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:10:53.648 -07 000000438 INF: FPGA: Recv YRDPOS 126082
17-03-17 22:10:53.658 -07 000000012 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:10:53.658 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-17 22:10:53.658 -07 000000569 INF: Y Motor: Encoder = 126082 = motor step 98501.6 = 61.5635 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:10:53.658 -07 000000569 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:10:53.658 -07 000000569 INF: Y Motor: Moving 1343 steps-19
17-03-17 22:10:53.668 -07 000000618 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:10:53.668 -07 000000438 INF: FPGA: Recv ZDACR 38952
17-03-17 22:10:53.678 -07 000000569 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:10:53.678 -07 000000618 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:10:53.678 -07 000000618 INF: Z Motor: MoveAbsStepped took 43 ms (did NOT wait for settling yet))
17-03-17 22:10:53.778 -07 000000438 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 60, FrontChillerTemperature: 4.031682,
17-03-17 22:10:53.828 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 1479623496, 0x0, 391868352) end. Duration was 402 ms.
17-03-17 22:10:53.838 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 22:10:53.838 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:10:53.838 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 402 ms.
17-03-17 22:10:53.838 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 22:10:53.838 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:10:53.838 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:10:53.838 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-17 22:10:53.838 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 22:10:53.848 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-17 22:10:53.858 -07 000000448 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:10:53.858 -07 000000012 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 22:10:54.048 -07 000000618 INF: FPGA: Recv YMVTILE
17-03-17 22:10:54.048 -07 000000569 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 22:10:54.088 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:10:54.098 -07 000000459 INF: FPGA: Recv YRDPOS 127785
17-03-17 22:10:54.098 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:10:54.098 -07 000000569 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:10:54.098 -07 000000569 INF: Y Motor: Position error before settling (table move) = -16 encoder counts (-0.008 mm)
17-03-17 22:10:54.098 -07 000000569 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.839 mm, average velocity = 2.114 mm/sec
17-03-17 22:10:55.048 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:10:55.048 -07 000000627 INF: FPGA: Recv YRDPOS 127785
17-03-17 22:10:55.058 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:10:55.058 -07 000000569 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:10:55.078 -07 000000569 INF: Y Motor: After move to 62.402607, error = -0.007587, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:10:55.078 -07 000000569 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:10:55.078 -07 000000569 INF: Y Motor: Moved to 62.3950 after 1448 ms (table move)
17-03-17 22:10:55.078 -07 000000482 INF: Z Motor: EndOfMoveAbsStepped: target = -0.178311 mm (DAC = 38952)
17-03-17 22:10:55.078 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:10:55.088 -07 000000618 INF: FPGA: Recv ZSGSRD 37057
17-03-17 22:10:55.088 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 22:10:55.088 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:10:55.088 -07 000000012 INF: FPGA: Recv ZSGSRD 37046
17-03-17 22:10:55.098 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:10:55.098 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:10:55.098 -07 000000012 INF: FPGA: Recv ZSGSRD 37046
17-03-17 22:10:55.108 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:10:55.118 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:10:55.118 -07 000000459 INF: FPGA: Recv ZSGSRD 37045
17-03-17 22:10:55.128 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:10:55.128 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:10:55.128 -07 000000459 INF: FPGA: Recv ZSGSRD 37050
17-03-17 22:10:55.138 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:10:55.158 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:10:55.158 -07 000000627 INF: FPGA: Recv ZSGSRD 37048
17-03-17 22:10:55.168 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:10:55.168 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:10:55.168 -07 000000627 INF: FPGA: Recv ZSGSRD 37047
17-03-17 22:10:55.178 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:10:55.198 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:10:55.198 -07 000000569 INF: FPGA: Recv ZSGSRD 37046
17-03-17 22:10:55.208 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:10:55.208 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:10:55.208 -07 000000623 INF: FPGA: Recv ZSGSRD 37049
17-03-17 22:10:55.218 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:10:55.218 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:10:55.218 -07 000000623 INF: FPGA: Recv ZSGSRD 37037
17-03-17 22:10:55.228 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:10:55.228 -07 000000482 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:10:55.228 -07 000000623 INF: FPGA: Recv ZPIEZORD 33488
17-03-17 22:10:55.238 -07 000000482 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:10:55.238 -07 000000482 INF: Z Motor: Piezo is near 51.5 V (nominally 0 to 100 V), expect near 59.4 V, since DAC is at 5.944 V. Piezo Error = -7.9 V.
17-03-17 22:10:55.238 -07 000000482 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.3 um, Read 10 ADC samples: Avg = 37047 (-177.4 uncal um), Error = 0.9 uncal um, Median = 37046 (-177.4 uncal um), StdDev = 5 (0.0 uncal um), Range = 20 (0.1 uncal um), Min = 37037 (-177.4 uncal um), Max = 37057 (-177.5 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-17 22:10:55.238 -07 000000482 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37047, posNoise = 10, negNoise = 10
17-03-17 22:10:55.238 -07 000000482 INF: Z Motor: After move to -0.178311, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:10:55.238 -07 000000482 INF: Z Motor: Settle wait time = 1451 ms, measure time = 152 ms (allowed 150 ms), total time = 1603 ms
17-03-17 22:10:55.238 -07 000000482 INF: Z Motor: Warning: Actual position measuring time = 152 ms, longer than max expected time of 150 ms
17-03-17 22:10:55.238 -07 000000482 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1607 ms
17-03-17 22:10:55.238 -07 000000482 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:10:55.238 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:10:55.238 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:10:55.238 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:10:55.238 -07 000000623 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:10:55.238 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:10:55.238 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:10:55.238 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 22:10:55.238 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:10:55.248 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:10:55.248 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:10:55.258 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 22:10:55.258 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-17 22:10:55.258 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:10:55.298 -07 000000448 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:10:55.498 -07 000000424 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:10:55.498 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:10:55.498 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:10:55.508 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610875264, 0x0, 559484976) start.
17-03-17 22:10:55.538 -07 000000482 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:10:55.538 -07 000000438 INF: FPGA: Recv CAMSNAP
17-03-17 22:10:55.538 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 285 ms overall
17-03-17 22:10:55.618 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610875264, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 22:10:55.618 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:10:55.618 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 22:10:55.618 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 22:10:55.638 -07 000000482 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:10:55.638 -07 000000627 INF: Autofocus start
17-03-17 22:10:55.638 -07 000000627 INF: MeasureProfile start
17-03-17 22:10:55.638 -07 000000448 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:10:55.648 -07 000000482 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:10:55.648 -07 000000482 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:10:55.648 -07 000000627 INF: MeasureProfile done
17-03-17 22:10:55.648 -07 000000627 INF: X=16  Z correction [um]=0.01042744
17-03-17 22:10:55.648 -07 000000627 INF: Autofocus finished
17-03-17 22:10:55.848 -07 000000448 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:10:55.848 -07 000000482 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 196 ms to get response, and 206 ms overall
17-03-17 22:10:55.858 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.39501953125, Z-position -0.178321139226953. ----------
17-03-17 22:10:55.858 -07 000000610 INF: Cycle	60	Tile	4	Exposure Settings		A	447	G	215	T	215	C	447
17-03-17 22:10:55.858 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37467, sync = True, waitForSettling = True)
17-03-17 22:10:55.858 -07 000000610 INF: Z Motor: Moving to -0.171513 mm, started at -0.178321 mm, distance = 6.81 um
17-03-17 22:10:55.858 -07 000000610 INF: FPGA: Xmit ZDACW 37467\n [Z Motor]
17-03-17 22:10:55.858 -07 000000478 INF: FPGA: Recv ZDACW
17-03-17 22:10:55.868 -07 000000610 INF: FPGA: 'ZDACW 37467' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:10:55.868 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:10:55.868 -07 000000459 INF: FPGA: Recv ZDACR 37467
17-03-17 22:10:55.878 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:10:55.878 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:10:56.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:10:56.028 -07 000000569 INF: FPGA: Recv ZSGSRD 35987
17-03-17 22:10:56.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:10:56.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:10:56.038 -07 000000569 INF: FPGA: Recv ZSGSRD 35989
17-03-17 22:10:56.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:10:56.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:10:56.048 -07 000000618 INF: FPGA: Recv ZSGSRD 35983
17-03-17 22:10:56.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:10:56.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:10:56.058 -07 000000478 INF: FPGA: Recv ZSGSRD 35986
17-03-17 22:10:56.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:10:56.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:10:56.068 -07 000000627 INF: FPGA: Recv ZSGSRD 35994
17-03-17 22:10:56.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:10:56.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:10:56.078 -07 000000438 INF: FPGA: Recv ZSGSRD 35987
17-03-17 22:10:56.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:10:56.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:10:56.088 -07 000000448 INF: FPGA: Recv ZSGSRD 35988
17-03-17 22:10:56.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:10:56.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:10:56.098 -07 000000438 INF: FPGA: Recv ZSGSRD 35989
17-03-17 22:10:56.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:10:56.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:10:56.108 -07 000000482 INF: FPGA: Recv ZSGSRD 35988
17-03-17 22:10:56.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:10:56.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:10:56.118 -07 000000569 INF: FPGA: Recv ZSGSRD 35992
17-03-17 22:10:56.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:10:56.128 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:10:56.128 -07 000000482 INF: FPGA: Recv ZPIEZORD 32054
17-03-17 22:10:56.138 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:10:56.138 -07 000000610 INF: Z Motor: Piezo is near 48.5 V (nominally 0 to 100 V), expect near 57.2 V, since DAC is at 5.717 V. Piezo Error = -8.7 V.
17-03-17 22:10:56.138 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.5 um, Read 10 ADC samples: Avg = 35988 (-170.6 uncal um), Error = 0.9 uncal um, Median = 35988 (-170.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35983 (-170.6 uncal um), Max = 35994 (-170.7 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 22:10:56.138 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35988, posNoise = 6, negNoise = 5
17-03-17 22:10:56.138 -07 000000610 INF: Z Motor: After move to -0.171513, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:10:56.138 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-17 22:10:56.138 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:10:56.138 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:10:56.138 -07 000000448 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:10:56.138 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:10:56.138 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:10:56.138 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:10:56.138 -07 000000627 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:10:56.138 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:10:56.138 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 22:10:56.138 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:10:56.138 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:10:56.138 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:10:56.138 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 22:10:56.138 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:10:56.148 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:10:56.148 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:10:56.158 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-17 22:10:56.158 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 18 ms.
17-03-17 22:10:56.158 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-17 22:10:56.158 -07 000000627 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 22:10:56.158 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 447 447 215 215 37644 150\n [Camera]
17-03-17 22:10:56.368 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:10:56.808 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 639
17-03-17 22:10:56.808 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 639
17-03-17 22:10:56.818 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:10:56.818 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:10:56.818 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start.
17-03-17 22:10:56.818 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 639
17-03-17 22:10:56.818 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 639
17-03-17 22:10:56.818 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:10:56.818 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:10:56.818 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) start.
17-03-17 22:10:56.948 -07 000000459 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:10:56.948 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 59. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=945, R2=968, Total=1913. Warn if over 250 bubbles per interval.
17-03-17 22:10:57.008 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37644 832
17-03-17 22:10:57.158 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP turning grn on 982
17-03-17 22:10:57.208 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 394 ms.
17-03-17 22:10:57.208 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 22:10:57.208 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:10:57.208 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) end. Duration was 392 ms.
17-03-17 22:10:57.208 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 22:10:57.208 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:10:57.208 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:10:57.208 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 22:10:57.218 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:10:57.218 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-17 22:10:57.368 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1200
17-03-17 22:10:57.368 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1200
17-03-17 22:10:57.368 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:10:57.378 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:10:57.378 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-17 22:10:57.378 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1200
17-03-17 22:10:57.378 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1200
17-03-17 22:10:57.378 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:10:57.378 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:10:57.378 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-17 22:10:57.558 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP 1389
17-03-17 22:10:57.558 -07 000000618 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:10:57.558 -07 000000610 INF: FPGA: 'CAMDBLSNAP 447 447 215 215 37644 150' command took 2 ms to send, 1388 ms to get response, and 1399 ms overall
17-03-17 22:10:57.688 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 22:10:57.688 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.39501953125, Z-Position -0.171517898568828. ------
17-03-17 22:10:57.698 -07 000000618 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.17811 mm
17-03-17 22:10:57.698 -07 000000618 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:10:57.698 -07 000000438 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:10:57.698 -07 000000623 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-17 22:10:57.698 -07 000000623 INF: Y Motor: Moving to 63.2326 mm, started at 62.3950 mm, delta = 0.8376 mm
17-03-17 22:10:57.698 -07 000000448 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:10:57.698 -07 000000012 INF: Z Motor: Entering MoveAbsStepped (DAC = 38908, sync = True, waitForSettling = False)
17-03-17 22:10:57.698 -07 000000012 INF: Z Motor: Moving to -0.178109 mm, started at -0.171518 mm, distance = -6.59 um
17-03-17 22:10:57.708 -07 000000438 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:10:57.708 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:10:57.708 -07 000000502 INF: FPGA: Recv YRDPOS 127785
17-03-17 22:10:57.718 -07 000000012 INF: FPGA: Xmit ZDACW 38908\n [Z Motor]
17-03-17 22:10:57.718 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 22:10:57.718 -07 000000623 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:10:57.718 -07 000000623 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:10:57.718 -07 000000623 INF: Y Motor: Moving 1340 steps-16
17-03-17 22:10:57.718 -07 000000569 INF: FPGA: Recv ZDACW
17-03-17 22:10:57.728 -07 000000438 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:10:57.728 -07 000000012 INF: FPGA: 'ZDACW 38908' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-17 22:10:57.738 -07 000000623 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:10:57.748 -07 000000012 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:10:57.748 -07 000000459 INF: FPGA: Recv ZDACR 38908
17-03-17 22:10:57.758 -07 000000012 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:10:57.758 -07 000000012 INF: Z Motor: MoveAbsStepped took 55 ms (did NOT wait for settling yet))
17-03-17 22:10:57.768 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 395 ms.
17-03-17 22:10:57.768 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 22:10:57.768 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:10:57.778 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 400 ms.
17-03-17 22:10:57.778 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 22:10:57.778 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 22:10:57.778 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:10:57.778 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:10:57.778 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-17 22:10:57.788 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-17 22:10:57.928 -07 000000627 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:10:57.928 -07 000000438 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 22:10:58.108 -07 000000012 INF: FPGA: Recv YMVTILE
17-03-17 22:10:58.108 -07 000000623 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 367 ms to get response, and 397 ms overall
17-03-17 22:10:58.148 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:10:58.158 -07 000000569 INF: FPGA: Recv YRDPOS 129482
17-03-17 22:10:58.158 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:10:58.158 -07 000000623 INF: Y Motor: Encoder = 129482 = motor step 101157.8 = 63.2236 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:10:58.158 -07 000000623 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-17 22:10:58.158 -07 000000623 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.838 mm, average velocity = 2.110 mm/sec
17-03-17 22:10:59.108 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:10:59.108 -07 000000424 INF: FPGA: Recv YRDPOS 129482
17-03-17 22:10:59.118 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:10:59.118 -07 000000623 INF: Y Motor: Encoder = 129482 = motor step 101157.8 = 63.2236 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:10:59.138 -07 000000448 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 60, FrontChillerTemperature: 3.999021,
17-03-17 22:10:59.138 -07 000000623 INF: Y Motor: After move to 63.232609, error = -0.008976, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:10:59.138 -07 000000623 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:10:59.138 -07 000000623 INF: Y Motor: Moved to 63.2236 after 1443 ms (table move)
17-03-17 22:10:59.148 -07 000000618 INF: Z Motor: EndOfMoveAbsStepped: target = -0.178109 mm (DAC = 38908)
17-03-17 22:10:59.158 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:10:59.158 -07 000000462 INF: FPGA: Recv ZSGSRD 37017
17-03-17 22:10:59.168 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:10:59.168 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:10:59.168 -07 000000012 INF: FPGA: Recv ZSGSRD 37014
17-03-17 22:10:59.178 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:10:59.198 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:10:59.198 -07 000000482 INF: FPGA: Recv ZSGSRD 37014
17-03-17 22:10:59.208 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:10:59.208 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:10:59.208 -07 000000458 INF: FPGA: Recv ZSGSRD 37014
17-03-17 22:10:59.218 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:10:59.218 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:10:59.218 -07 000000627 INF: FPGA: Recv ZSGSRD 37015
17-03-17 22:10:59.228 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:10:59.228 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:10:59.228 -07 000000482 INF: FPGA: Recv ZSGSRD 37013
17-03-17 22:10:59.238 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:10:59.238 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:10:59.238 -07 000000478 INF: FPGA: Recv ZSGSRD 37020
17-03-17 22:10:59.248 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:10:59.248 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:10:59.248 -07 000000502 INF: FPGA: Recv ZSGSRD 37013
17-03-17 22:10:59.258 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:10:59.258 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:10:59.258 -07 000000623 INF: FPGA: Recv ZSGSRD 37017
17-03-17 22:10:59.268 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:10:59.268 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:10:59.268 -07 000000486 INF: FPGA: Recv ZSGSRD 37018
17-03-17 22:10:59.278 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:10:59.278 -07 000000618 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:10:59.278 -07 000000458 INF: FPGA: Recv ZPIEZORD 33466
17-03-17 22:10:59.288 -07 000000618 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:10:59.288 -07 000000618 INF: Z Motor: Piezo is near 51.5 V (nominally 0 to 100 V), expect near 59.4 V, since DAC is at 5.937 V. Piezo Error = -7.9 V.
17-03-17 22:10:59.288 -07 000000618 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.1 um, Read 10 ADC samples: Avg = 37016 (-177.2 uncal um), Error = 0.9 uncal um, Median = 37014 (-177.2 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 37013 (-177.2 uncal um), Max = 37020 (-177.3 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 22:10:59.288 -07 000000618 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37016, posNoise = 4, negNoise = 3
17-03-17 22:10:59.288 -07 000000618 INF: Z Motor: After move to -0.178109, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:10:59.288 -07 000000618 INF: Z Motor: Settle wait time = 1446 ms, measure time = 139 ms (allowed 150 ms), total time = 1585 ms
17-03-17 22:10:59.288 -07 000000618 INF: Z Motor: Waiting extra 11 ms after reading position to reach expected total of 150 ms
17-03-17 22:10:59.308 -07 000000618 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1609 ms
17-03-17 22:10:59.308 -07 000000618 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:10:59.308 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:10:59.308 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:10:59.308 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:10:59.308 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:10:59.308 -07 000000627 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:10:59.308 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:10:59.308 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 22:10:59.308 -07 000000627 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:10:59.318 -07 000000627 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:10:59.318 -07 000000627 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:10:59.318 -07 000000627 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 22:10:59.318 -07 000000627 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 22:10:59.328 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:10:59.368 -07 000000618 INF: FPGA: Recv @CAMSNAP turning led on 42
17-03-17 22:10:59.568 -07 000000459 INF: FPGA: Recv @CAMSNAP img rdy 242
17-03-17 22:10:59.568 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 242
17-03-17 22:10:59.568 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:10:59.578 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 22:10:59.608 -07 000000448 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:10:59.608 -07 000000458 INF: FPGA: Recv CAMSNAP
17-03-17 22:10:59.608 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 284 ms overall
17-03-17 22:10:59.688 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 22:10:59.688 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:10:59.688 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:10:59.688 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 22:10:59.708 -07 000000486 INF: Autofocus start
17-03-17 22:10:59.708 -07 000000486 INF: MeasureProfile start
17-03-17 22:10:59.708 -07 000000438 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:10:59.708 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:10:59.718 -07 000000438 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:10:59.718 -07 000000438 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:10:59.718 -07 000000486 INF: MeasureProfile done
17-03-17 22:10:59.718 -07 000000486 INF: X=0  Z correction [um]=-0.0713522
17-03-17 22:10:59.718 -07 000000486 INF: Autofocus finished
17-03-17 22:10:59.918 -07 000000627 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:10:59.918 -07 000000438 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:10:59.918 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.2236328125, Z-position -0.178121988650559. ----------
17-03-17 22:10:59.928 -07 000000610 INF: Cycle	60	Tile	5	Exposure Settings		A	447	G	215	T	215	C	447
17-03-17 22:10:59.928 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37405, sync = True, waitForSettling = True)
17-03-17 22:10:59.928 -07 000000610 INF: Z Motor: Moving to -0.171229 mm, started at -0.178122 mm, distance = 6.89 um
17-03-17 22:10:59.928 -07 000000610 INF: FPGA: Xmit ZDACW 37405\n [Z Motor]
17-03-17 22:10:59.928 -07 000000448 INF: FPGA: Recv ZDACW
17-03-17 22:10:59.938 -07 000000610 INF: FPGA: 'ZDACW 37405' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:10:59.938 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:10:59.938 -07 000000438 INF: FPGA: Recv ZDACR 37405
17-03-17 22:10:59.948 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:10:59.948 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:11:00.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:00.098 -07 000000459 INF: FPGA: Recv ZSGSRD 35953
17-03-17 22:11:00.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:11:00.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:00.108 -07 000000012 INF: FPGA: Recv ZSGSRD 35942
17-03-17 22:11:00.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:00.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:00.118 -07 000000462 INF: FPGA: Recv ZSGSRD 35944
17-03-17 22:11:00.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:00.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:00.128 -07 000000462 INF: FPGA: Recv ZSGSRD 35946
17-03-17 22:11:00.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:11:00.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:00.138 -07 000000424 INF: FPGA: Recv ZSGSRD 35949
17-03-17 22:11:00.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:00.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:00.148 -07 000000458 INF: FPGA: Recv ZSGSRD 35939
17-03-17 22:11:00.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:00.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:00.158 -07 000000012 INF: FPGA: Recv ZSGSRD 35944
17-03-17 22:11:00.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:00.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:00.168 -07 000000486 INF: FPGA: Recv ZSGSRD 35944
17-03-17 22:11:00.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:00.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:00.178 -07 000000424 INF: FPGA: Recv ZSGSRD 35950
17-03-17 22:11:00.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:00.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:00.188 -07 000000623 INF: FPGA: Recv ZSGSRD 35940
17-03-17 22:11:00.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:00.208 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:11:00.208 -07 000000424 INF: FPGA: Recv ZPIEZORD 32054
17-03-17 22:11:00.218 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:11:00.218 -07 000000610 INF: Z Motor: Piezo is near 48.5 V (nominally 0 to 100 V), expect near 57.1 V, since DAC is at 5.708 V. Piezo Error = -8.6 V.
17-03-17 22:11:00.218 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.2 um, Read 10 ADC samples: Avg = 35945 (-170.4 uncal um), Error = 0.9 uncal um, Median = 35944 (-170.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 35939 (-170.3 uncal um), Max = 35953 (-170.4 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 22:11:00.218 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35945, posNoise = 8, negNoise = 6
17-03-17 22:11:00.218 -07 000000610 INF: Z Motor: After move to -0.171229, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:11:00.218 -07 000000610 INF: Z Motor: MoveAbsStepped took 288 ms)
17-03-17 22:11:00.218 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:11:00.218 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:11:00.218 -07 000000486 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:11:00.218 -07 000000551 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:11:00.218 -07 000000482 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:11:00.218 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:11:00.218 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:11:00.218 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:11:00.218 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 22:11:00.218 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:11:00.218 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:11:00.218 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:11:00.218 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 22:11:00.218 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:11:00.218 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 22:11:00.218 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:11:00.238 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 13 ms.
17-03-17 22:11:00.238 -07 000000482 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 17 ms.
17-03-17 22:11:00.238 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-17 22:11:00.238 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 22:11:00.238 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 447 447 215 215 37581 150\n [Camera]
17-03-17 22:11:00.438 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:11:00.888 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 639
17-03-17 22:11:00.888 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 639
17-03-17 22:11:00.888 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:11:00.888 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:11:00.888 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 22:11:00.888 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 639
17-03-17 22:11:00.888 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 639
17-03-17 22:11:00.888 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:11:00.888 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:11:00.888 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1479623496, 0x0, 418435064) start.
17-03-17 22:11:01.078 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37581 832
17-03-17 22:11:01.228 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning grn on 982
17-03-17 22:11:01.268 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1479623496, 0x0, 418435064) end. Duration was 380 ms.
17-03-17 22:11:01.268 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-17 22:11:01.268 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:11:01.278 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:11:01.278 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 388 ms.
17-03-17 22:11:01.278 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 22:11:01.278 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:11:01.278 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:11:01.278 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 22:11:01.278 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 22:11:01.448 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1197
17-03-17 22:11:01.448 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1197
17-03-17 22:11:01.448 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:11:01.448 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:11:01.448 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) start.
17-03-17 22:11:01.448 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1197
17-03-17 22:11:01.448 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1197
17-03-17 22:11:01.448 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:11:01.448 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:11:01.448 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-17 22:11:01.748 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP 1389
17-03-17 22:11:01.748 -07 000000551 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:11:01.748 -07 000000610 INF: FPGA: 'CAMDBLSNAP 447 447 215 215 37581 150' command took 2 ms to send, 1502 ms to get response, and 1506 ms overall
17-03-17 22:11:01.748 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 22:11:01.748 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.2236328125, Z-Position -0.171241657446733. ------
17-03-17 22:11:01.748 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:11:01.748 -07 000000482 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.17763 mm
17-03-17 22:11:01.748 -07 000000482 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:11:01.758 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:11:01.768 -07 000000448 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-17 22:11:01.768 -07 000000448 INF: Y Motor: Moving to 64.0626 mm, started at 63.2236 mm, delta = 0.8390 mm
17-03-17 22:11:01.768 -07 000000448 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:11:01.768 -07 000000424 INF: Z Motor: Entering MoveAbsStepped (DAC = 38802, sync = True, waitForSettling = False)
17-03-17 22:11:01.768 -07 000000424 INF: Z Motor: Moving to -0.177624 mm, started at -0.171242 mm, distance = -6.38 um
17-03-17 22:11:01.768 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:11:01.768 -07 000000502 INF: FPGA: Recv YRDPOS 129482
17-03-17 22:11:01.778 -07 000000424 INF: FPGA: Xmit ZDACW 38802\n [Z Motor]
17-03-17 22:11:01.778 -07 000000448 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:01.778 -07 000000448 INF: Y Motor: Encoder = 129482 = motor step 101157.8 = 63.2236 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:11:01.778 -07 000000448 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:11:01.778 -07 000000448 INF: Y Motor: Moving 1342 steps-18
17-03-17 22:11:01.778 -07 000000627 INF: FPGA: Recv ZDACW
17-03-17 22:11:01.788 -07 000000424 INF: FPGA: 'ZDACW 38802' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-17 22:11:01.788 -07 000000561 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:11:01.798 -07 000000448 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:11:01.808 -07 000000424 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:11:01.808 -07 000000551 INF: FPGA: Recv ZDACR 38802
17-03-17 22:11:01.818 -07 000000424 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:11:01.818 -07 000000424 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-17 22:11:01.848 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) end. Duration was 396 ms.
17-03-17 22:11:01.848 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 22:11:01.848 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:11:01.848 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 395 ms.
17-03-17 22:11:01.848 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 22:11:01.848 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:11:01.848 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:11:01.848 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 22:11:01.848 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:11:01.858 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-17 22:11:01.948 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:11:01.948 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 59. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=945, R2=968, Total=1913. Warn if over 250 bubbles per interval.
17-03-17 22:11:01.988 -07 000000424 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:11:01.988 -07 000000561 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 221 ms overall
17-03-17 22:11:02.168 -07 000000627 INF: FPGA: Recv YMVTILE
17-03-17 22:11:02.168 -07 000000448 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 22:11:02.208 -07 000000448 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:11:02.218 -07 000000462 INF: FPGA: Recv YRDPOS 131187
17-03-17 22:11:02.218 -07 000000448 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:11:02.218 -07 000000448 INF: Y Motor: Encoder = 131187 = motor step 102489.8 = 64.0562 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:11:02.218 -07 000000448 INF: Y Motor: Position error before settling (table move) = -13 encoder counts (-0.006 mm)
17-03-17 22:11:02.218 -07 000000448 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.839 mm, average velocity = 2.113 mm/sec
17-03-17 22:11:03.168 -07 000000448 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:11:03.168 -07 000000438 INF: FPGA: Recv YRDPOS 131188
17-03-17 22:11:03.178 -07 000000448 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:11:03.178 -07 000000448 INF: Y Motor: Encoder = 131188 = motor step 102490.6 = 64.0566 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:11:03.198 -07 000000448 INF: Y Motor: After move to 64.062607, error = -0.005966, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:11:03.198 -07 000000448 INF: Y Motor: Position error after settling (table move) = -12 encoder counts (-0.006 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 22:11:03.198 -07 000000448 INF: Y Motor: Moved to 64.0566 after 1433 ms (table move)
17-03-17 22:11:03.198 -07 000000482 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177624 mm (DAC = 38802)
17-03-17 22:11:03.198 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:03.198 -07 000000424 INF: FPGA: Recv ZSGSRD 36937
17-03-17 22:11:03.208 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 22:11:03.208 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:03.208 -07 000000459 INF: FPGA: Recv ZSGSRD 36942
17-03-17 22:11:03.218 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:03.218 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:03.218 -07 000000438 INF: FPGA: Recv ZSGSRD 36940
17-03-17 22:11:03.228 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:03.228 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:03.228 -07 000000623 INF: FPGA: Recv ZSGSRD 36933
17-03-17 22:11:03.238 -07 000000482 INF: FPGA: 'ZSGSRD' command took 2 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:03.238 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:03.238 -07 000000502 INF: FPGA: Recv ZSGSRD 36943
17-03-17 22:11:03.248 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:03.248 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:03.248 -07 000000459 INF: FPGA: Recv ZSGSRD 36932
17-03-17 22:11:03.258 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:03.258 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:03.258 -07 000000627 INF: FPGA: Recv ZSGSRD 36935
17-03-17 22:11:03.268 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:03.268 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:03.268 -07 000000478 INF: FPGA: Recv ZSGSRD 36939
17-03-17 22:11:03.278 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:03.278 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:03.278 -07 000000502 INF: FPGA: Recv ZSGSRD 36944
17-03-17 22:11:03.288 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:03.288 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:03.288 -07 000000569 INF: FPGA: Recv ZSGSRD 36937
17-03-17 22:11:03.298 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:03.298 -07 000000482 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:11:03.298 -07 000000561 INF: FPGA: Recv ZPIEZORD 33366
17-03-17 22:11:03.308 -07 000000482 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:03.308 -07 000000482 INF: Z Motor: Piezo is near 51.3 V (nominally 0 to 100 V), expect near 59.2 V, since DAC is at 5.921 V. Piezo Error = -7.9 V.
17-03-17 22:11:03.308 -07 000000482 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.6 um, Read 10 ADC samples: Avg = 36938 (-176.7 uncal um), Error = 0.9 uncal um, Median = 36938 (-176.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36932 (-176.7 uncal um), Max = 36944 (-176.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 22:11:03.308 -07 000000482 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36938, posNoise = 6, negNoise = 6
17-03-17 22:11:03.308 -07 000000482 INF: Z Motor: After move to -0.177624, error = 0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:11:03.308 -07 000000482 INF: Z Motor: Settle wait time = 1436 ms, measure time = 103 ms (allowed 150 ms), total time = 1539 ms
17-03-17 22:11:03.308 -07 000000482 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 22:11:03.358 -07 000000482 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1602 ms
17-03-17 22:11:03.358 -07 000000482 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:11:03.358 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:11:03.358 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:11:03.358 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:11:03.358 -07 000000623 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:11:03.368 -07 000000478 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:11:03.368 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:11:03.368 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 22:11:03.368 -07 000000478 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:11:03.368 -07 000000478 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:11:03.368 -07 000000478 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:11:03.378 -07 000000478 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 22:11:03.378 -07 000000478 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 22:11:03.378 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:11:03.418 -07 000000458 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:11:03.618 -07 000000561 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:11:03.618 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:11:03.628 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:11:03.628 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 22:11:03.658 -07 000000448 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:11:03.658 -07 000000623 INF: FPGA: Recv CAMSNAP
17-03-17 22:11:03.658 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 285 ms overall
17-03-17 22:11:03.738 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 22:11:03.738 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:11:03.738 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 22:11:03.738 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 22:11:03.758 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:11:03.758 -07 000000627 INF: Autofocus start
17-03-17 22:11:03.758 -07 000000627 INF: MeasureProfile start
17-03-17 22:11:03.758 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:11:03.768 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 22:11:03.768 -07 000000424 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:11:03.768 -07 000000627 INF: MeasureProfile done
17-03-17 22:11:03.768 -07 000000627 INF: X=16  Z correction [um]=0.01042744
17-03-17 22:11:03.768 -07 000000627 INF: Autofocus finished
17-03-17 22:11:03.968 -07 000000623 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:11:03.968 -07 000000424 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:11:03.968 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.056640625, Z-position -0.177620900103501. ----------
17-03-17 22:11:03.968 -07 000000610 INF: Cycle	60	Tile	6	Exposure Settings		A	447	G	215	T	215	C	447
17-03-17 22:11:03.978 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37317, sync = True, waitForSettling = True)
17-03-17 22:11:03.978 -07 000000610 INF: Z Motor: Moving to -0.170826 mm, started at -0.177621 mm, distance = 6.79 um
17-03-17 22:11:03.978 -07 000000610 INF: FPGA: Xmit ZDACW 37317\n [Z Motor]
17-03-17 22:11:03.978 -07 000000448 INF: FPGA: Recv ZDACW
17-03-17 22:11:03.988 -07 000000610 INF: FPGA: 'ZDACW 37317' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:03.988 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:11:03.988 -07 000000459 INF: FPGA: Recv ZDACR 37317
17-03-17 22:11:03.998 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:03.998 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:11:04.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:04.148 -07 000000458 INF: FPGA: Recv ZSGSRD 35888
17-03-17 22:11:04.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:11:04.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:04.158 -07 000000627 INF: FPGA: Recv ZSGSRD 35887
17-03-17 22:11:04.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:04.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:04.168 -07 000000482 INF: FPGA: Recv ZSGSRD 35885
17-03-17 22:11:04.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:04.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:04.178 -07 000000438 INF: FPGA: Recv ZSGSRD 35877
17-03-17 22:11:04.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:04.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:04.188 -07 000000438 INF: FPGA: Recv ZSGSRD 35886
17-03-17 22:11:04.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:04.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:04.208 -07 000000478 INF: FPGA: Recv ZSGSRD 35884
17-03-17 22:11:04.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 20 ms overall
17-03-17 22:11:04.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:04.218 -07 000000551 INF: FPGA: Recv ZSGSRD 35880
17-03-17 22:11:04.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:04.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:04.228 -07 000000623 INF: FPGA: Recv ZSGSRD 35884
17-03-17 22:11:04.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:04.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:04.238 -07 000000438 INF: FPGA: Recv ZSGSRD 35885
17-03-17 22:11:04.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:04.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:04.248 -07 000000561 INF: FPGA: Recv ZSGSRD 35886
17-03-17 22:11:04.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:04.258 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:11:04.258 -07 000000627 INF: FPGA: Recv ZPIEZORD 31974
17-03-17 22:11:04.268 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:04.268 -07 000000610 INF: Z Motor: Piezo is near 48.3 V (nominally 0 to 100 V), expect near 56.9 V, since DAC is at 5.694 V. Piezo Error = -8.6 V.
17-03-17 22:11:04.268 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.8 um, Read 10 ADC samples: Avg = 35884 (-170.0 uncal um), Error = 0.9 uncal um, Median = 35885 (-170.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35877 (-169.9 uncal um), Max = 35888 (-170.0 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 22:11:04.268 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35884, posNoise = 4, negNoise = 7
17-03-17 22:11:04.268 -07 000000610 INF: Z Motor: After move to -0.170826, error = -0.000024, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:11:04.268 -07 000000610 INF: Z Motor: MoveAbsStepped took 291 ms)
17-03-17 22:11:04.268 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:11:04.268 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:11:04.268 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:11:04.268 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:11:04.268 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:11:04.268 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:11:04.268 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:11:04.268 -07 000000482 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:11:04.268 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:11:04.268 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:11:04.268 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:11:04.268 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:11:04.278 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:11:04.278 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:11:04.278 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:11:04.278 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:11:04.278 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 22:11:04.288 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 22:11:04.288 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-17 22:11:04.288 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 22:11:04.288 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 447 447 215 215 37494 150\n [Camera]
17-03-17 22:11:04.488 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:11:04.518 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 60, FrontChillerTemperature: 4.009895,
17-03-17 22:11:04.938 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 639
17-03-17 22:11:04.938 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 639
17-03-17 22:11:04.938 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:11:04.938 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 639
17-03-17 22:11:04.938 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 639
17-03-17 22:11:04.938 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:11:04.948 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:11:04.948 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-17 22:11:04.948 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:11:04.948 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-17 22:11:05.128 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37494 832
17-03-17 22:11:05.278 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning grn on 982
17-03-17 22:11:05.338 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 392 ms.
17-03-17 22:11:05.338 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 22:11:05.338 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:11:05.338 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 393 ms.
17-03-17 22:11:05.338 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 22:11:05.338 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:11:05.338 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:11:05.338 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-17 22:11:05.348 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:11:05.348 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-17 22:11:05.488 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1197
17-03-17 22:11:05.488 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1197
17-03-17 22:11:05.498 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:11:05.498 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:11:05.498 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 22:11:05.498 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1197
17-03-17 22:11:05.498 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1197
17-03-17 22:11:05.498 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:11:05.498 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:11:05.498 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 1479623496, 0x0, 418435064) start.
17-03-17 22:11:05.688 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP 1389
17-03-17 22:11:05.688 -07 000000618 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:11:05.688 -07 000000610 INF: FPGA: 'CAMDBLSNAP 447 447 215 215 37494 150' command took 2 ms to send, 1391 ms to get response, and 1397 ms overall
17-03-17 22:11:05.688 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 22:11:05.688 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.056640625, Z-Position -0.170849780506085. ------
17-03-17 22:11:05.688 -07 000000551 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:11:05.688 -07 000000424 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.17714 mm
17-03-17 22:11:05.688 -07 000000424 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:11:05.688 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:11:05.688 -07 000000627 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-17 22:11:05.688 -07 000000486 INF: Z Motor: Entering MoveAbsStepped (DAC = 38697, sync = True, waitForSettling = False)
17-03-17 22:11:05.688 -07 000000627 INF: Y Motor: Moving to 64.8926 mm, started at 64.0566 mm, delta = 0.8360 mm
17-03-17 22:11:05.688 -07 000000486 INF: Z Motor: Moving to -0.177144 mm, started at -0.170850 mm, distance = -6.29 um
17-03-17 22:11:05.698 -07 000000486 INF: FPGA: Xmit ZDACW 38697\n [Z Motor]
17-03-17 22:11:05.698 -07 000000551 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:11:05.698 -07 000000618 INF: FPGA: Recv ZDACW
17-03-17 22:11:05.708 -07 000000486 INF: FPGA: 'ZDACW 38697' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:11:05.708 -07 000000486 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:11:05.708 -07 000000618 INF: FPGA: Recv ZDACR 38697
17-03-17 22:11:05.718 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:11:05.718 -07 000000486 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:05.718 -07 000000486 INF: Z Motor: MoveAbsStepped took 20 ms (did NOT wait for settling yet))
17-03-17 22:11:05.718 -07 000000438 INF: FPGA: Recv YRDPOS 131188
17-03-17 22:11:05.728 -07 000000551 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:11:05.728 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-17 22:11:05.728 -07 000000627 INF: Y Motor: Encoder = 131188 = motor step 102490.6 = 64.0566 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:11:05.728 -07 000000627 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:11:05.728 -07 000000627 INF: Y Motor: Moving 1338 steps-13
17-03-17 22:11:05.738 -07 000000627 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:11:05.898 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 403 ms.
17-03-17 22:11:05.898 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 22:11:05.898 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:11:05.898 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 1479623496, 0x0, 418435064) end. Duration was 401 ms.
17-03-17 22:11:05.898 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 22:11:05.898 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:11:05.898 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:11:05.898 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-17 22:11:05.908 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:11:05.908 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-17 22:11:05.928 -07 000000012 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:11:05.928 -07 000000551 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 232 ms overall
17-03-17 22:11:06.108 -07 000000478 INF: FPGA: Recv YMVTILE
17-03-17 22:11:06.108 -07 000000627 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-17 22:11:06.148 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:11:06.158 -07 000000551 INF: FPGA: Recv YRDPOS 132871
17-03-17 22:11:06.158 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 22:11:06.158 -07 000000627 INF: Y Motor: Encoder = 132871 = motor step 103805.5 = 64.8784 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:11:06.158 -07 000000627 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-17 22:11:06.158 -07 000000627 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.836 mm, average velocity = 2.160 mm/sec
17-03-17 22:11:06.948 -07 000000478 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:11:06.948 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 59. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=945, R2=968, Total=1913. Warn if over 250 bubbles per interval.
17-03-17 22:11:07.108 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:11:07.108 -07 000000438 INF: FPGA: Recv YRDPOS 132871
17-03-17 22:11:07.118 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:11:07.118 -07 000000627 INF: Y Motor: Encoder = 132871 = motor step 103805.5 = 64.8784 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:11:07.138 -07 000000627 INF: Y Motor: After move to 64.892609, error = -0.014191, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:11:07.138 -07 000000627 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:11:07.138 -07 000000627 INF: Y Motor: Moved to 64.8784 after 1445 ms (table move)
17-03-17 22:11:07.138 -07 000000424 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177144 mm (DAC = 38697)
17-03-17 22:11:07.138 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:07.148 -07 000000486 INF: FPGA: Recv ZSGSRD 36871
17-03-17 22:11:07.148 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 22:11:07.148 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:07.148 -07 000000478 INF: FPGA: Recv ZSGSRD 36860
17-03-17 22:11:07.158 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:11:07.158 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:07.158 -07 000000623 INF: FPGA: Recv ZSGSRD 36865
17-03-17 22:11:07.168 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:07.168 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:07.168 -07 000000458 INF: FPGA: Recv ZSGSRD 36871
17-03-17 22:11:07.178 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:07.178 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:07.178 -07 000000459 INF: FPGA: Recv ZSGSRD 36869
17-03-17 22:11:07.188 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:07.188 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:07.188 -07 000000551 INF: FPGA: Recv ZSGSRD 36871
17-03-17 22:11:07.198 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:07.198 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:07.198 -07 000000462 INF: FPGA: Recv ZSGSRD 36866
17-03-17 22:11:07.208 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:07.208 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:07.208 -07 000000012 INF: FPGA: Recv ZSGSRD 36857
17-03-17 22:11:07.218 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:07.218 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:07.218 -07 000000561 INF: FPGA: Recv ZSGSRD 36861
17-03-17 22:11:07.228 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:11:07.228 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:07.228 -07 000000458 INF: FPGA: Recv ZSGSRD 36863
17-03-17 22:11:07.238 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:07.238 -07 000000424 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:11:07.238 -07 000000618 INF: FPGA: Recv ZPIEZORD 33286
17-03-17 22:11:07.248 -07 000000424 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:07.248 -07 000000424 INF: Z Motor: Piezo is near 51.1 V (nominally 0 to 100 V), expect near 59.0 V, since DAC is at 5.905 V. Piezo Error = -7.9 V.
17-03-17 22:11:07.248 -07 000000424 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.1 um, Read 10 ADC samples: Avg = 36865 (-176.3 uncal um), Error = 0.9 uncal um, Median = 36866 (-176.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36857 (-176.2 uncal um), Max = 36871 (-176.3 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 22:11:07.248 -07 000000424 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36865, posNoise = 6, negNoise = 8
17-03-17 22:11:07.248 -07 000000424 INF: Z Motor: After move to -0.177144, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:11:07.248 -07 000000424 INF: Z Motor: Settle wait time = 1448 ms, measure time = 102 ms (allowed 150 ms), total time = 1550 ms
17-03-17 22:11:07.248 -07 000000424 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 22:11:07.298 -07 000000424 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1603 ms
17-03-17 22:11:07.298 -07 000000424 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:11:07.298 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:11:07.298 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:11:07.298 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:11:07.298 -07 000000459 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:11:07.298 -07 000000012 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:11:07.298 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:11:07.298 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 22:11:07.298 -07 000000012 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:11:07.308 -07 000000012 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:11:07.308 -07 000000012 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:11:07.318 -07 000000012 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-17 22:11:07.318 -07 000000012 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-17 22:11:07.318 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:11:07.358 -07 000000012 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:11:07.558 -07 000000561 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:11:07.558 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:11:07.558 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:11:07.568 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610875264, 0x0, 559484976) start.
17-03-17 22:11:07.598 -07 000000618 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:11:07.598 -07 000000458 INF: FPGA: Recv CAMSNAP
17-03-17 22:11:07.598 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 285 ms overall
17-03-17 22:11:07.678 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610875264, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 22:11:07.678 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:11:07.678 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:11:07.678 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-17 22:11:07.698 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:11:07.698 -07 000000462 INF: Autofocus start
17-03-17 22:11:07.698 -07 000000462 INF: MeasureProfile start
17-03-17 22:11:07.698 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:11:07.708 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:11:07.708 -07 000000424 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:11:07.708 -07 000000462 INF: MeasureProfile done
17-03-17 22:11:07.708 -07 000000462 INF: X=64  Z correction [um]=0.2557664
17-03-17 22:11:07.708 -07 000000462 INF: Autofocus finished
17-03-17 22:11:07.908 -07 000000459 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:11:07.908 -07 000000424 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:11:07.908 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87841796875, Z-position -0.177151932617153. ----------
17-03-17 22:11:07.918 -07 000000610 INF: Cycle	60	Tile	7	Exposure Settings		A	447	G	215	T	215	C	447
17-03-17 22:11:07.918 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37265, sync = True, waitForSettling = True)
17-03-17 22:11:07.918 -07 000000610 INF: Z Motor: Moving to -0.170588 mm, started at -0.177152 mm, distance = 6.56 um
17-03-17 22:11:07.918 -07 000000610 INF: FPGA: Xmit ZDACW 37265\n [Z Motor]
17-03-17 22:11:07.918 -07 000000482 INF: FPGA: Recv ZDACW
17-03-17 22:11:07.928 -07 000000610 INF: FPGA: 'ZDACW 37265' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:11:07.928 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:11:07.928 -07 000000486 INF: FPGA: Recv ZDACR 37265
17-03-17 22:11:07.938 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:07.938 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:11:08.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:08.088 -07 000000551 INF: FPGA: Recv ZSGSRD 35849
17-03-17 22:11:08.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:08.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:08.098 -07 000000478 INF: FPGA: Recv ZSGSRD 35845
17-03-17 22:11:08.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:08.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:08.108 -07 000000569 INF: FPGA: Recv ZSGSRD 35845
17-03-17 22:11:08.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:08.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:08.118 -07 000000458 INF: FPGA: Recv ZSGSRD 35845
17-03-17 22:11:08.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:08.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:08.128 -07 000000561 INF: FPGA: Recv ZSGSRD 35847
17-03-17 22:11:08.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:08.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:08.138 -07 000000623 INF: FPGA: Recv ZSGSRD 35849
17-03-17 22:11:08.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:08.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:08.148 -07 000000569 INF: FPGA: Recv ZSGSRD 35843
17-03-17 22:11:08.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:08.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:08.158 -07 000000424 INF: FPGA: Recv ZSGSRD 35840
17-03-17 22:11:08.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:08.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:08.168 -07 000000561 INF: FPGA: Recv ZSGSRD 35846
17-03-17 22:11:08.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:08.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:08.178 -07 000000478 INF: FPGA: Recv ZSGSRD 35842
17-03-17 22:11:08.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:08.188 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:11:08.188 -07 000000569 INF: FPGA: Recv ZPIEZORD 31871
17-03-17 22:11:08.198 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:08.198 -07 000000610 INF: Z Motor: Piezo is near 48.1 V (nominally 0 to 100 V), expect near 56.9 V, since DAC is at 5.686 V. Piezo Error = -8.8 V.
17-03-17 22:11:08.198 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.6 um, Read 10 ADC samples: Avg = 35845 (-169.7 uncal um), Error = 0.9 uncal um, Median = 35845 (-169.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35840 (-169.7 uncal um), Max = 35849 (-169.7 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 22:11:08.198 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35845, posNoise = 4, negNoise = 5
17-03-17 22:11:08.198 -07 000000610 INF: Z Motor: After move to -0.170588, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:11:08.198 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 22:11:08.198 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:11:08.198 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:11:08.198 -07 000000551 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:11:08.198 -07 000000459 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:11:08.198 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:11:08.198 -07 000000448 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:11:08.198 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:11:08.198 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:11:08.198 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 22:11:08.198 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:11:08.198 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 22:11:08.198 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:11:08.198 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:11:08.208 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:11:08.208 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:11:08.208 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:11:08.208 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 22:11:08.208 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 22:11:08.218 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 22:11:08.218 -07 000000459 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 22:11:08.218 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 447 447 215 215 37442 150\n [Camera]
17-03-17 22:11:08.418 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:11:08.858 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 639
17-03-17 22:11:08.858 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 639
17-03-17 22:11:08.858 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:11:08.868 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:11:08.868 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start.
17-03-17 22:11:08.868 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 639
17-03-17 22:11:08.868 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 639
17-03-17 22:11:08.868 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:11:08.868 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:11:08.868 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) start.
17-03-17 22:11:09.058 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37442 832
17-03-17 22:11:09.208 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning grn on 982
17-03-17 22:11:09.258 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 390 ms.
17-03-17 22:11:09.258 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 22:11:09.258 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:11:09.258 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) end. Duration was 388 ms.
17-03-17 22:11:09.258 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 22:11:09.258 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:11:09.258 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:11:09.258 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 22:11:09.258 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:11:09.268 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 22:11:09.418 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1197
17-03-17 22:11:09.418 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1197
17-03-17 22:11:09.418 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:11:09.418 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1197
17-03-17 22:11:09.418 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:11:09.428 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1197
17-03-17 22:11:09.428 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 22:11:09.428 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:11:09.428 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:11:09.428 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 22:11:09.608 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP 1390
17-03-17 22:11:09.608 -07 000000458 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:11:09.608 -07 000000610 INF: FPGA: 'CAMDBLSNAP 447 447 215 215 37442 150' command took 2 ms to send, 1388 ms to get response, and 1397 ms overall
17-03-17 22:11:09.618 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 22:11:09.618 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.87841796875, Z-Position -0.170599236232556. ------
17-03-17 22:11:09.618 -07 000000448 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:11:09.618 -07 000000502 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.17719 mm
17-03-17 22:11:09.618 -07 000000502 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:11:09.618 -07 000000486 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-17 22:11:09.618 -07 000000486 INF: Y Motor: Moving to 65.7226 mm, started at 64.8784 mm, delta = 0.8442 mm
17-03-17 22:11:09.618 -07 000000424 INF: Z Motor: Entering MoveAbsStepped (DAC = 38707, sync = True, waitForSettling = False)
17-03-17 22:11:09.618 -07 000000424 INF: Z Motor: Moving to -0.177189 mm, started at -0.170599 mm, distance = -6.59 um
17-03-17 22:11:09.618 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:11:09.628 -07 000000448 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 22:11:09.628 -07 000000424 INF: FPGA: Xmit ZDACW 38707\n [Z Motor]
17-03-17 22:11:09.628 -07 000000623 INF: FPGA: Recv ZDACW
17-03-17 22:11:09.638 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:11:09.638 -07 000000424 INF: FPGA: 'ZDACW 38707' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 22:11:09.638 -07 000000012 INF: FPGA: Recv YRDPOS 132872
17-03-17 22:11:09.648 -07 000000448 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:11:09.648 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-17 22:11:09.648 -07 000000486 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:11:09.768 -07 000000424 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:11:09.768 -07 000000551 INF: FPGA: Recv ZDACR 38707
17-03-17 22:11:09.768 -07 000000486 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:11:09.768 -07 000000486 INF: Y Motor: Moving 1350 steps-29
17-03-17 22:11:09.778 -07 000000424 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 139 ms overall
17-03-17 22:11:09.778 -07 000000424 INF: Z Motor: MoveAbsStepped took 152 ms (did NOT wait for settling yet))
17-03-17 22:11:09.778 -07 000000486 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:11:09.828 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 401 ms.
17-03-17 22:11:09.828 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 22:11:09.828 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:11:09.828 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 406 ms.
17-03-17 22:11:09.828 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-17 22:11:09.828 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:11:09.828 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:11:09.838 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:11:09.838 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 413 ms.
17-03-17 22:11:09.838 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-17 22:11:09.848 -07 000000458 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:11:09.848 -07 000000448 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 79 ms to get response, and 222 ms overall
17-03-17 22:11:09.878 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 60, FrontChillerTemperature: 4.012614,
17-03-17 22:11:10.148 -07 000000627 INF: FPGA: Recv YMVTILE
17-03-17 22:11:10.148 -07 000000486 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 379 ms overall
17-03-17 22:11:10.188 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:11:10.198 -07 000000424 INF: FPGA: Recv YRDPOS 134582
17-03-17 22:11:10.198 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 22:11:10.198 -07 000000486 INF: Y Motor: Encoder = 134582 = motor step 105142.2 = 65.7139 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:11:10.198 -07 000000486 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-17 22:11:10.198 -07 000000486 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 379 ms, distance = 0.844 mm, average velocity = 2.227 mm/sec
17-03-17 22:11:11.148 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:11:11.148 -07 000000618 INF: FPGA: Recv YRDPOS 134582
17-03-17 22:11:11.158 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:11:11.158 -07 000000486 INF: Y Motor: Encoder = 134582 = motor step 105142.2 = 65.7139 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:11:11.188 -07 000000486 INF: Y Motor: After move to 65.722610, error = -0.008743, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:11:11.188 -07 000000486 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:11:11.188 -07 000000486 INF: Y Motor: Moved to 65.7139 after 1566 ms (table move)
17-03-17 22:11:11.188 -07 000000502 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177189 mm (DAC = 38707)
17-03-17 22:11:11.188 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:11.198 -07 000000618 INF: FPGA: Recv ZSGSRD 36875
17-03-17 22:11:11.198 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 22:11:11.198 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:11.198 -07 000000438 INF: FPGA: Recv ZSGSRD 36871
17-03-17 22:11:11.208 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:11:11.208 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:11.208 -07 000000424 INF: FPGA: Recv ZSGSRD 36871
17-03-17 22:11:11.218 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:11.218 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:11.218 -07 000000623 INF: FPGA: Recv ZSGSRD 36870
17-03-17 22:11:11.228 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:11.248 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:11.248 -07 000000478 INF: FPGA: Recv ZSGSRD 36874
17-03-17 22:11:11.258 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:11:11.258 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:11.258 -07 000000438 INF: FPGA: Recv ZSGSRD 36871
17-03-17 22:11:11.268 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:11.288 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:11.288 -07 000000618 INF: FPGA: Recv ZSGSRD 36874
17-03-17 22:11:11.298 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:11:11.298 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:11.298 -07 000000561 INF: FPGA: Recv ZSGSRD 36871
17-03-17 22:11:11.308 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:11.318 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:11.318 -07 000000459 INF: FPGA: Recv ZSGSRD 36869
17-03-17 22:11:11.328 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:11:11.328 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:11.328 -07 000000012 INF: FPGA: Recv ZSGSRD 36875
17-03-17 22:11:11.338 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:11.338 -07 000000502 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:11:11.338 -07 000000623 INF: FPGA: Recv ZPIEZORD 33248
17-03-17 22:11:11.348 -07 000000502 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:11.348 -07 000000502 INF: Z Motor: Piezo is near 51.0 V (nominally 0 to 100 V), expect near 59.1 V, since DAC is at 5.906 V. Piezo Error = -8.0 V.
17-03-17 22:11:11.348 -07 000000502 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.2 um, Read 10 ADC samples: Avg = 36872 (-176.3 uncal um), Error = 0.9 uncal um, Median = 36871 (-176.3 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 36869 (-176.3 uncal um), Max = 36875 (-176.3 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 22:11:11.348 -07 000000502 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36872, posNoise = 3, negNoise = 3
17-03-17 22:11:11.348 -07 000000502 INF: Z Motor: After move to -0.177189, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:11:11.348 -07 000000502 INF: Z Motor: Settle wait time = 1570 ms, measure time = 153 ms (allowed 150 ms), total time = 1723 ms
17-03-17 22:11:11.348 -07 000000502 INF: Z Motor: Warning: Actual position measuring time = 153 ms, longer than max expected time of 150 ms
17-03-17 22:11:11.348 -07 000000502 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1726 ms
17-03-17 22:11:11.348 -07 000000502 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:11:11.348 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:11:11.348 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:11:11.348 -07 000000458 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:11:11.348 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:11:11.358 -07 000000551 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:11:11.358 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:11:11.358 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:11:11.358 -07 000000551 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:11:11.358 -07 000000551 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:11:11.358 -07 000000551 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:11:11.368 -07 000000551 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 22:11:11.368 -07 000000551 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 22:11:11.368 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:11:11.408 -07 000000502 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:11:11.608 -07 000000623 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:11:11.608 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:11:11.608 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:11:11.618 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 22:11:11.648 -07 000000424 INF: FPGA: Recv @CAMSNAP 282
17-03-17 22:11:11.658 -07 000000569 INF: FPGA: Recv CAMSNAP
17-03-17 22:11:11.658 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 286 ms overall
17-03-17 22:11:11.728 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 22:11:11.728 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:11:11.728 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:11:11.728 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 22:11:11.758 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:11:11.758 -07 000000462 INF: Autofocus start
17-03-17 22:11:11.758 -07 000000462 INF: MeasureProfile start
17-03-17 22:11:11.758 -07 000000551 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:11:11.768 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:11:11.768 -07 000000618 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:11:11.768 -07 000000462 INF: MeasureProfile done
17-03-17 22:11:11.768 -07 000000462 INF: X=-16  Z correction [um]=-0.1496812
17-03-17 22:11:11.768 -07 000000462 INF: Autofocus finished
17-03-17 22:11:11.948 -07 000000623 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:11:11.948 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 59. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=945, R2=968, Total=1913. Warn if over 250 bubbles per interval.
17-03-17 22:11:11.968 -07 000000569 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:11:11.968 -07 000000618 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:11:11.968 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.7138671875, Z-position -0.177196902102145. ----------
17-03-17 22:11:11.968 -07 000000610 INF: Cycle	60	Tile	8	Exposure Settings		A	447	G	215	T	215	C	447
17-03-17 22:11:11.978 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37187, sync = True, waitForSettling = True)
17-03-17 22:11:11.978 -07 000000610 INF: Z Motor: Moving to -0.170231 mm, started at -0.177197 mm, distance = 6.97 um
17-03-17 22:11:11.978 -07 000000610 INF: FPGA: Xmit ZDACW 37187\n [Z Motor]
17-03-17 22:11:11.978 -07 000000486 INF: FPGA: Recv ZDACW
17-03-17 22:11:11.988 -07 000000610 INF: FPGA: 'ZDACW 37187' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:11:11.988 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:11:11.988 -07 000000438 INF: FPGA: Recv ZDACR 37187
17-03-17 22:11:11.998 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:11.998 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:11:12.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:12.148 -07 000000462 INF: FPGA: Recv ZSGSRD 35785
17-03-17 22:11:12.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:11:12.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:12.158 -07 000000448 INF: FPGA: Recv ZSGSRD 35790
17-03-17 22:11:12.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:12.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:12.168 -07 000000561 INF: FPGA: Recv ZSGSRD 35795
17-03-17 22:11:12.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:12.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:12.178 -07 000000012 INF: FPGA: Recv ZSGSRD 35784
17-03-17 22:11:12.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:12.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:12.188 -07 000000462 INF: FPGA: Recv ZSGSRD 35788
17-03-17 22:11:12.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:12.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:12.198 -07 000000486 INF: FPGA: Recv ZSGSRD 35788
17-03-17 22:11:12.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:12.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:12.208 -07 000000438 INF: FPGA: Recv ZSGSRD 35792
17-03-17 22:11:12.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:12.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:12.218 -07 000000502 INF: FPGA: Recv ZSGSRD 35787
17-03-17 22:11:12.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:12.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:12.228 -07 000000462 INF: FPGA: Recv ZSGSRD 35788
17-03-17 22:11:12.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:12.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:12.238 -07 000000486 INF: FPGA: Recv ZSGSRD 35795
17-03-17 22:11:12.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:12.248 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:11:12.248 -07 000000438 INF: FPGA: Recv ZPIEZORD 31803
17-03-17 22:11:12.258 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:12.258 -07 000000610 INF: Z Motor: Piezo is near 47.9 V (nominally 0 to 100 V), expect near 56.7 V, since DAC is at 5.674 V. Piezo Error = -8.8 V.
17-03-17 22:11:12.258 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.2 um, Read 10 ADC samples: Avg = 35789 (-169.4 uncal um), Error = 0.9 uncal um, Median = 35788 (-169.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35784 (-169.3 uncal um), Max = 35795 (-169.4 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 22:11:12.258 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35789, posNoise = 6, negNoise = 5
17-03-17 22:11:12.258 -07 000000610 INF: Z Motor: After move to -0.170231, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:11:12.258 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 22:11:12.258 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:11:12.258 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:11:12.258 -07 000000448 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:11:12.258 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:11:12.258 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:11:12.258 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:11:12.258 -07 000000478 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:11:12.258 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:11:12.258 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 22:11:12.258 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:11:12.258 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:11:12.258 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:11:12.268 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:11:12.268 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:11:12.268 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:11:12.268 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:11:12.278 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 22:11:12.278 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 22:11:12.278 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 22:11:12.278 -07 000000478 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 22:11:12.278 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 447 447 215 215 37364 150\n [Camera]
17-03-17 22:11:12.478 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:11:12.928 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 639
17-03-17 22:11:12.928 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 639
17-03-17 22:11:12.928 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:11:12.928 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:11:12.928 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 22:11:12.928 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 639
17-03-17 22:11:12.928 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 639
17-03-17 22:11:12.928 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:11:12.928 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:11:12.928 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 1479623496, 0x0, 418435064) start.
17-03-17 22:11:13.118 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37364 832
17-03-17 22:11:13.268 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning grn on 982
17-03-17 22:11:13.318 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 395 ms.
17-03-17 22:11:13.318 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 22:11:13.328 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:11:13.328 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 1479623496, 0x0, 418435064) end. Duration was 394 ms.
17-03-17 22:11:13.328 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 22:11:13.328 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:11:13.328 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:11:13.328 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 22:11:13.328 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:11:13.338 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-17 22:11:13.488 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1197
17-03-17 22:11:13.488 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1197
17-03-17 22:11:13.488 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:11:13.488 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1197
17-03-17 22:11:13.488 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1197
17-03-17 22:11:13.488 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:11:13.488 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-17 22:11:13.488 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:11:13.488 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:11:13.488 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-17 22:11:13.678 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP 1391
17-03-17 22:11:13.678 -07 000000012 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:11:13.678 -07 000000610 INF: FPGA: 'CAMDBLSNAP 447 447 215 215 37364 150' command took 2 ms to send, 1393 ms to get response, and 1398 ms overall
17-03-17 22:11:13.678 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 22:11:13.678 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.7138671875, Z-Position -0.170239480352618. ------
17-03-17 22:11:13.798 -07 000000551 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:11:13.798 -07 000000458 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.17654 mm
17-03-17 22:11:13.798 -07 000000458 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:11:13.798 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:11:13.798 -07 000000561 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-17 22:11:13.798 -07 000000618 INF: Z Motor: Entering MoveAbsStepped (DAC = 38565, sync = True, waitForSettling = False)
17-03-17 22:11:13.798 -07 000000618 INF: Z Motor: Moving to -0.176539 mm, started at -0.170239 mm, distance = -6.30 um
17-03-17 22:11:13.798 -07 000000561 INF: Y Motor: Moving to 66.5526 mm, started at 65.7139 mm, delta = 0.8387 mm
17-03-17 22:11:13.808 -07 000000551 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:13.808 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:11:13.808 -07 000000438 INF: FPGA: Recv YRDPOS 134582
17-03-17 22:11:13.818 -07 000000618 INF: FPGA: Xmit ZDACW 38565\n [Z Motor]
17-03-17 22:11:13.818 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 22:11:13.818 -07 000000561 INF: Y Motor: Encoder = 134582 = motor step 105142.2 = 65.7139 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:11:13.818 -07 000000561 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:11:13.818 -07 000000561 INF: Y Motor: Moving 1342 steps-18
17-03-17 22:11:13.818 -07 000000459 INF: FPGA: Recv ZDACW
17-03-17 22:11:13.828 -07 000000551 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:11:13.828 -07 000000618 INF: FPGA: 'ZDACW 38565' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-17 22:11:13.838 -07 000000561 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:11:13.848 -07 000000618 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:11:13.848 -07 000000482 INF: FPGA: Recv ZDACR 38565
17-03-17 22:11:13.858 -07 000000618 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:11:13.858 -07 000000618 INF: Z Motor: MoveAbsStepped took 55 ms (did NOT wait for settling yet))
17-03-17 22:11:13.878 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 395 ms.
17-03-17 22:11:13.878 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 22:11:13.878 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:11:13.888 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 396 ms.
17-03-17 22:11:13.888 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 22:11:13.888 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:11:13.888 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:11:13.888 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 22:11:13.888 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:11:13.898 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-17 22:11:14.028 -07 000000459 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:11:14.028 -07 000000551 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 22:11:14.208 -07 000000438 INF: FPGA: Recv YMVTILE
17-03-17 22:11:14.208 -07 000000561 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 22:11:14.248 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:11:14.258 -07 000000438 INF: FPGA: Recv YRDPOS 136271
17-03-17 22:11:14.258 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:11:14.258 -07 000000561 INF: Y Motor: Encoder = 136271 = motor step 106461.7 = 66.5386 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:11:14.258 -07 000000561 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-17 22:11:14.258 -07 000000561 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.839 mm, average velocity = 2.113 mm/sec
17-03-17 22:11:15.208 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:11:15.208 -07 000000459 INF: FPGA: Recv YRDPOS 136272
17-03-17 22:11:15.218 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:11:15.218 -07 000000561 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:11:15.238 -07 000000551 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 60, FrontChillerTemperature: 4.008536,
17-03-17 22:11:15.238 -07 000000561 INF: Y Motor: After move to 66.552605, error = -0.013542, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:11:15.238 -07 000000561 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 22:11:15.238 -07 000000561 INF: Y Motor: Moved to 66.5391 after 1443 ms (table move)
17-03-17 22:11:15.248 -07 000000458 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176539 mm (DAC = 38565)
17-03-17 22:11:15.268 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:15.268 -07 000000561 INF: FPGA: Recv ZSGSRD 36774
17-03-17 22:11:15.278 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-17 22:11:15.288 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:15.288 -07 000000438 INF: FPGA: Recv ZSGSRD 36771
17-03-17 22:11:15.298 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:11:15.298 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:15.298 -07 000000424 INF: FPGA: Recv ZSGSRD 36765
17-03-17 22:11:15.308 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:15.308 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:15.308 -07 000000486 INF: FPGA: Recv ZSGSRD 36764
17-03-17 22:11:15.318 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:15.318 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:15.318 -07 000000561 INF: FPGA: Recv ZSGSRD 36771
17-03-17 22:11:15.328 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:15.328 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:15.328 -07 000000478 INF: FPGA: Recv ZSGSRD 36768
17-03-17 22:11:15.338 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:15.338 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:15.338 -07 000000424 INF: FPGA: Recv ZSGSRD 36773
17-03-17 22:11:15.348 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:15.348 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:15.348 -07 000000551 INF: FPGA: Recv ZSGSRD 36775
17-03-17 22:11:15.358 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:15.358 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:15.358 -07 000000561 INF: FPGA: Recv ZSGSRD 36772
17-03-17 22:11:15.368 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:15.368 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:15.368 -07 000000478 INF: FPGA: Recv ZSGSRD 36772
17-03-17 22:11:15.378 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:15.378 -07 000000458 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:11:15.378 -07 000000424 INF: FPGA: Recv ZPIEZORD 33139
17-03-17 22:11:15.388 -07 000000458 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:15.388 -07 000000458 INF: Z Motor: Piezo is near 50.8 V (nominally 0 to 100 V), expect near 58.8 V, since DAC is at 5.885 V. Piezo Error = -8.1 V.
17-03-17 22:11:15.388 -07 000000458 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.5 um, Read 10 ADC samples: Avg = 36770 (-175.7 uncal um), Error = 0.9 uncal um, Median = 36772 (-175.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36764 (-175.6 uncal um), Max = 36775 (-175.7 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 22:11:15.388 -07 000000458 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36770, posNoise = 5, negNoise = 6
17-03-17 22:11:15.388 -07 000000458 INF: Z Motor: After move to -0.176539, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:11:15.388 -07 000000458 INF: Z Motor: Settle wait time = 1448 ms, measure time = 137 ms (allowed 150 ms), total time = 1585 ms
17-03-17 22:11:15.388 -07 000000458 INF: Z Motor: Waiting extra 13 ms after reading position to reach expected total of 150 ms
17-03-17 22:11:15.408 -07 000000458 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1609 ms
17-03-17 22:11:15.408 -07 000000458 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:11:15.408 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:11:15.408 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:11:15.408 -07 000000482 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:11:15.408 -07 000000551 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:11:15.418 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:11:15.418 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:11:15.418 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 22:11:15.418 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:11:15.418 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:11:15.418 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:11:15.428 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 22:11:15.428 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 22:11:15.428 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:11:15.478 -07 000000502 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:11:15.678 -07 000000012 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:11:15.678 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:11:15.678 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:11:15.678 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 22:11:15.708 -07 000000438 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:11:15.708 -07 000000458 INF: FPGA: Recv CAMSNAP
17-03-17 22:11:15.708 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 284 ms overall
17-03-17 22:11:15.788 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 22:11:15.788 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:11:15.788 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:11:15.788 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 116 ms.
17-03-17 22:11:15.808 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:11:15.808 -07 000000012 INF: Autofocus start
17-03-17 22:11:15.808 -07 000000012 INF: MeasureProfile start
17-03-17 22:11:15.808 -07 000000459 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:11:15.818 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:11:15.818 -07 000000424 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:11:15.818 -07 000000012 INF: MeasureProfile done
17-03-17 22:11:15.818 -07 000000012 INF: X=48  Z correction [um]=0.1739867
17-03-17 22:11:15.818 -07 000000012 INF: Autofocus finished
17-03-17 22:11:16.018 -07 000000478 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:11:16.018 -07 000000424 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:11:16.018 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.5390625, Z-position -0.176541632463685. ----------
17-03-17 22:11:16.018 -07 000000610 INF: Cycle	60	Tile	9	Exposure Settings		A	447	G	215	T	215	C	447
17-03-17 22:11:16.028 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37116, sync = True, waitForSettling = True)
17-03-17 22:11:16.028 -07 000000610 INF: Z Motor: Moving to -0.169906 mm, started at -0.176542 mm, distance = 6.64 um
17-03-17 22:11:16.028 -07 000000610 INF: FPGA: Xmit ZDACW 37116\n [Z Motor]
17-03-17 22:11:16.028 -07 000000438 INF: FPGA: Recv ZDACW
17-03-17 22:11:16.038 -07 000000610 INF: FPGA: 'ZDACW 37116' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:16.038 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:11:16.038 -07 000000627 INF: FPGA: Recv ZDACR 37116
17-03-17 22:11:16.048 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:16.048 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:11:16.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:16.198 -07 000000561 INF: FPGA: Recv ZSGSRD 35739
17-03-17 22:11:16.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:11:16.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:16.208 -07 000000458 INF: FPGA: Recv ZSGSRD 35739
17-03-17 22:11:16.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:16.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:16.218 -07 000000012 INF: FPGA: Recv ZSGSRD 35740
17-03-17 22:11:16.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:16.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:16.228 -07 000000448 INF: FPGA: Recv ZSGSRD 35740
17-03-17 22:11:16.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:16.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:16.238 -07 000000478 INF: FPGA: Recv ZSGSRD 35740
17-03-17 22:11:16.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:16.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:16.248 -07 000000502 INF: FPGA: Recv ZSGSRD 35739
17-03-17 22:11:16.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:11:16.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:16.258 -07 000000561 INF: FPGA: Recv ZSGSRD 35740
17-03-17 22:11:16.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:16.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:16.268 -07 000000551 INF: FPGA: Recv ZSGSRD 35743
17-03-17 22:11:16.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:16.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:16.278 -07 000000486 INF: FPGA: Recv ZSGSRD 35741
17-03-17 22:11:16.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:16.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:16.288 -07 000000478 INF: FPGA: Recv ZSGSRD 35740
17-03-17 22:11:16.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:16.298 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:11:16.298 -07 000000462 INF: FPGA: Recv ZPIEZORD 31703
17-03-17 22:11:16.308 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:16.308 -07 000000610 INF: Z Motor: Piezo is near 47.7 V (nominally 0 to 100 V), expect near 56.6 V, since DAC is at 5.664 V. Piezo Error = -8.9 V.
17-03-17 22:11:16.308 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.9 um, Read 10 ADC samples: Avg = 35740 (-169.1 uncal um), Error = 0.9 uncal um, Median = 35740 (-169.1 uncal um), StdDev = 1 (0.0 uncal um), Range = 4 (0.0 uncal um), Min = 35739 (-169.0 uncal um), Max = 35743 (-169.1 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 1 (0.0 uncal um)
17-03-17 22:11:16.308 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35740, posNoise = 3, negNoise = 1
17-03-17 22:11:16.308 -07 000000610 INF: Z Motor: After move to -0.169906, error = -0.000019, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:11:16.308 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 22:11:16.308 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:11:16.308 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:11:16.308 -07 000000486 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:11:16.308 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:11:16.308 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:11:16.308 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:11:16.308 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:11:16.308 -07 000000478 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:11:16.308 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 22:11:16.308 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:11:16.308 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:11:16.308 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:11:16.318 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 22:11:16.318 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:11:16.318 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:11:16.318 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:11:16.328 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 22:11:16.328 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 22:11:16.328 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 17 ms.
17-03-17 22:11:16.328 -07 000000486 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 23 ms.
17-03-17 22:11:16.338 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 447 447 215 215 37293 150\n [Camera]
17-03-17 22:11:16.538 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:11:16.948 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:11:16.948 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 59. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=945, R2=968, Total=1913. Warn if over 250 bubbles per interval.
17-03-17 22:11:16.978 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 639
17-03-17 22:11:16.978 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 639
17-03-17 22:11:16.978 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:11:16.988 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 639
17-03-17 22:11:16.988 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 639
17-03-17 22:11:16.988 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:11:16.988 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:11:16.988 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 22:11:16.998 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:11:16.998 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 22:11:17.178 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37293 832
17-03-17 22:11:17.318 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning grn on 982
17-03-17 22:11:17.368 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 376 ms.
17-03-17 22:11:17.368 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 22:11:17.368 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:11:17.378 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:11:17.378 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 383 ms.
17-03-17 22:11:17.378 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 22:11:17.378 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:11:17.378 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:11:17.378 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 22:11:17.378 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 22:11:17.538 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1197
17-03-17 22:11:17.538 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1197
17-03-17 22:11:17.538 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:11:17.538 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:11:17.538 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 22:11:17.538 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1197
17-03-17 22:11:17.538 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1197
17-03-17 22:11:17.548 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:11:17.548 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:11:17.548 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 1479623496, 0x0, 418435064) start.
17-03-17 22:11:17.728 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP 1390
17-03-17 22:11:17.728 -07 000000459 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:11:17.728 -07 000000610 INF: FPGA: 'CAMDBLSNAP 447 447 215 215 37293 150' command took 2 ms to send, 1387 ms to get response, and 1397 ms overall
17-03-17 22:11:17.738 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 22:11:17.738 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.5390625, Z-Position -0.169924693957672. ------
17-03-17 22:11:17.738 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:11:17.738 -07 000000012 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.17672 mm
17-03-17 22:11:17.738 -07 000000012 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:11:17.738 -07 000000458 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-17 22:11:17.738 -07 000000458 INF: Y Motor: Moving to 67.3826 mm, started at 66.5391 mm, delta = 0.8435 mm
17-03-17 22:11:17.738 -07 000000482 INF: Z Motor: Entering MoveAbsStepped (DAC = 38605, sync = True, waitForSettling = False)
17-03-17 22:11:17.738 -07 000000482 INF: Z Motor: Moving to -0.176722 mm, started at -0.169925 mm, distance = -6.80 um
17-03-17 22:11:17.738 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:11:17.748 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:11:17.748 -07 000000482 INF: FPGA: Xmit ZDACW 38605\n [Z Motor]
17-03-17 22:11:17.748 -07 000000459 INF: FPGA: Recv ZDACW
17-03-17 22:11:17.758 -07 000000482 INF: FPGA: 'ZDACW 38605' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 22:11:17.758 -07 000000458 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:11:17.758 -07 000000459 INF: FPGA: Recv YRDPOS 136272
17-03-17 22:11:17.768 -07 000000561 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:11:17.768 -07 000000458 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-17 22:11:17.768 -07 000000458 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:11:17.768 -07 000000458 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:11:17.768 -07 000000458 INF: Y Motor: Moving 1350 steps-29
17-03-17 22:11:17.778 -07 000000482 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:11:17.778 -07 000000438 INF: FPGA: Recv ZDACR 38605
17-03-17 22:11:17.788 -07 000000458 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:11:17.788 -07 000000482 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-17 22:11:17.788 -07 000000482 INF: Z Motor: MoveAbsStepped took 44 ms (did NOT wait for settling yet))
17-03-17 22:11:17.938 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 401 ms.
17-03-17 22:11:17.938 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 22:11:17.948 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:11:17.948 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 1479623496, 0x0, 418435064) end. Duration was 399 ms.
17-03-17 22:11:17.948 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 22:11:17.948 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:11:17.948 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:11:17.948 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-17 22:11:17.948 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:11:17.958 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-17 22:11:17.968 -07 000000551 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:11:17.968 -07 000000561 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 22:11:18.158 -07 000000424 INF: FPGA: Recv YMVTILE
17-03-17 22:11:18.158 -07 000000458 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 22:11:18.198 -07 000000458 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:11:18.208 -07 000000486 INF: FPGA: Recv YRDPOS 137977
17-03-17 22:11:18.208 -07 000000458 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:11:18.208 -07 000000458 INF: Y Motor: Encoder = 137977 = motor step 107794.5 = 67.3716 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:11:18.208 -07 000000458 INF: Y Motor: Position error before settling (table move) = -23 encoder counts (-0.011 mm)
17-03-17 22:11:18.208 -07 000000458 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.844 mm, average velocity = 2.125 mm/sec
17-03-17 22:11:19.158 -07 000000458 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:11:19.158 -07 000000627 INF: FPGA: Recv YRDPOS 137977
17-03-17 22:11:19.168 -07 000000458 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:11:19.168 -07 000000458 INF: Y Motor: Encoder = 137977 = motor step 107794.5 = 67.3716 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:11:19.188 -07 000000458 INF: Y Motor: After move to 67.382607, error = -0.011024, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:11:19.188 -07 000000458 INF: Y Motor: Position error after settling (table move) = -23 encoder counts (-0.011 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:11:19.188 -07 000000458 INF: Y Motor: Moved to 67.3716 after 1449 ms (table move)
17-03-17 22:11:19.188 -07 000000012 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176722 mm (DAC = 38605)
17-03-17 22:11:19.188 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:19.198 -07 000000424 INF: FPGA: Recv ZSGSRD 36805
17-03-17 22:11:19.198 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 22:11:19.198 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:19.198 -07 000000561 INF: FPGA: Recv ZSGSRD 36796
17-03-17 22:11:19.208 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:11:19.208 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:19.208 -07 000000502 INF: FPGA: Recv ZSGSRD 36801
17-03-17 22:11:19.218 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:19.218 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:19.218 -07 000000448 INF: FPGA: Recv ZSGSRD 36802
17-03-17 22:11:19.228 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:19.228 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:19.228 -07 000000424 INF: FPGA: Recv ZSGSRD 36803
17-03-17 22:11:19.238 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:19.238 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:19.238 -07 000000561 INF: FPGA: Recv ZSGSRD 36800
17-03-17 22:11:19.248 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:19.248 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:19.248 -07 000000486 INF: FPGA: Recv ZSGSRD 36797
17-03-17 22:11:19.258 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:19.258 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:19.258 -07 000000627 INF: FPGA: Recv ZSGSRD 36794
17-03-17 22:11:19.268 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:19.268 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:19.268 -07 000000482 INF: FPGA: Recv ZSGSRD 36797
17-03-17 22:11:19.278 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:19.278 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:19.278 -07 000000462 INF: FPGA: Recv ZSGSRD 36792
17-03-17 22:11:19.288 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:19.288 -07 000000012 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:11:19.288 -07 000000551 INF: FPGA: Recv ZPIEZORD 33150
17-03-17 22:11:19.298 -07 000000012 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:19.298 -07 000000012 INF: Z Motor: Piezo is near 50.8 V (nominally 0 to 100 V), expect near 58.9 V, since DAC is at 5.891 V. Piezo Error = -8.1 V.
17-03-17 22:11:19.298 -07 000000012 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.7 um, Read 10 ADC samples: Avg = 36799 (-175.8 uncal um), Error = 0.9 uncal um, Median = 36798 (-175.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36792 (-175.8 uncal um), Max = 36805 (-175.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 22:11:19.298 -07 000000012 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36799, posNoise = 6, negNoise = 7
17-03-17 22:11:19.298 -07 000000012 INF: Z Motor: After move to -0.176722, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:11:19.298 -07 000000012 INF: Z Motor: Settle wait time = 1452 ms, measure time = 102 ms (allowed 150 ms), total time = 1554 ms
17-03-17 22:11:19.298 -07 000000012 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 22:11:19.348 -07 000000012 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1606 ms
17-03-17 22:11:19.348 -07 000000012 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:11:19.348 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:11:19.348 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:11:19.348 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:11:19.348 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:11:19.348 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:11:19.348 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:11:19.348 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:11:19.348 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:11:19.358 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:11:19.358 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:11:19.358 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 22:11:19.358 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 22:11:19.368 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:11:19.408 -07 000000462 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:11:19.608 -07 000000478 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:11:19.608 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:11:19.608 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:11:19.608 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610875264, 0x0, 559484976) start.
17-03-17 22:11:19.648 -07 000000627 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:11:19.648 -07 000000502 INF: FPGA: Recv CAMSNAP
17-03-17 22:11:19.648 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 284 ms overall
17-03-17 22:11:19.728 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610875264, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 22:11:19.728 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:11:19.728 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:11:19.728 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 22:11:19.748 -07 000000486 INF: Autofocus start
17-03-17 22:11:19.748 -07 000000486 INF: MeasureProfile start
17-03-17 22:11:19.748 -07 000000448 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:11:19.748 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:11:19.758 -07 000000448 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:11:19.758 -07 000000448 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:11:19.758 -07 000000486 INF: MeasureProfile done
17-03-17 22:11:19.758 -07 000000486 INF: X=-112  Z correction [um]=-0.6579942
17-03-17 22:11:19.758 -07 000000486 INF: Autofocus finished
17-03-17 22:11:19.958 -07 000000424 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:11:19.958 -07 000000448 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:11:19.958 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.37158203125, Z-position -0.176727934615796. ----------
17-03-17 22:11:19.958 -07 000000610 INF: Cycle	60	Tile	10	Exposure Settings		A	447	G	215	T	215	C	447
17-03-17 22:11:19.968 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36974, sync = True, waitForSettling = True)
17-03-17 22:11:19.968 -07 000000610 INF: Z Motor: Moving to -0.169256 mm, started at -0.176728 mm, distance = 7.47 um
17-03-17 22:11:19.968 -07 000000610 INF: FPGA: Xmit ZDACW 36974\n [Z Motor]
17-03-17 22:11:19.968 -07 000000486 INF: FPGA: Recv ZDACW
17-03-17 22:11:19.978 -07 000000610 INF: FPGA: 'ZDACW 36974' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:19.978 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:11:19.978 -07 000000551 INF: FPGA: Recv ZDACR 36974
17-03-17 22:11:19.988 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:19.988 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:11:20.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:20.138 -07 000000424 INF: FPGA: Recv ZSGSRD 35637
17-03-17 22:11:20.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:20.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:20.148 -07 000000627 INF: FPGA: Recv ZSGSRD 35635
17-03-17 22:11:20.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:11:20.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:20.158 -07 000000482 INF: FPGA: Recv ZSGSRD 35633
17-03-17 22:11:20.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:20.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:20.168 -07 000000486 INF: FPGA: Recv ZSGSRD 35639
17-03-17 22:11:20.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:20.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:20.178 -07 000000459 INF: FPGA: Recv ZSGSRD 35633
17-03-17 22:11:20.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:20.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:20.188 -07 000000569 INF: FPGA: Recv ZSGSRD 35636
17-03-17 22:11:20.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:20.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:20.198 -07 000000482 INF: FPGA: Recv ZSGSRD 35635
17-03-17 22:11:20.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:20.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:20.208 -07 000000462 INF: FPGA: Recv ZSGSRD 35633
17-03-17 22:11:20.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:20.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:20.218 -07 000000448 INF: FPGA: Recv ZSGSRD 35639
17-03-17 22:11:20.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:20.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:20.228 -07 000000627 INF: FPGA: Recv ZSGSRD 35637
17-03-17 22:11:20.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:20.238 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:11:20.238 -07 000000486 INF: FPGA: Recv ZPIEZORD 31608
17-03-17 22:11:20.248 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:20.248 -07 000000610 INF: Z Motor: Piezo is near 47.5 V (nominally 0 to 100 V), expect near 56.4 V, since DAC is at 5.642 V. Piezo Error = -8.9 V.
17-03-17 22:11:20.248 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.3 um, Read 10 ADC samples: Avg = 35636 (-168.4 uncal um), Error = 0.9 uncal um, Median = 35636 (-168.4 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 35633 (-168.4 uncal um), Max = 35639 (-168.4 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 22:11:20.248 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35636, posNoise = 3, negNoise = 3
17-03-17 22:11:20.248 -07 000000610 INF: Z Motor: After move to -0.169256, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:11:20.248 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 22:11:20.248 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:11:20.248 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:11:20.248 -07 000000478 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:11:20.248 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:11:20.248 -07 000000482 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:11:20.248 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:11:20.248 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:11:20.248 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:11:20.248 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:11:20.248 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:11:20.248 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:11:20.248 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:11:20.248 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 22:11:20.248 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:11:20.248 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:11:20.258 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:11:20.268 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-17 22:11:20.268 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 18 ms.
17-03-17 22:11:20.268 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 22:11:20.268 -07 000000482 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 22:11:20.268 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 447 447 215 215 37150 150\n [Camera]
17-03-17 22:11:20.468 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:11:20.608 -07 000000486 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 60, FrontChillerTemperature: 4.012614,
17-03-17 22:11:20.918 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 639
17-03-17 22:11:20.918 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 639
17-03-17 22:11:20.918 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:11:20.918 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:11:20.918 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start.
17-03-17 22:11:20.918 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 639
17-03-17 22:11:20.918 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 639
17-03-17 22:11:20.918 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:11:20.918 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:11:20.918 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) start.
17-03-17 22:11:21.108 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37150 832
17-03-17 22:11:21.258 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP turning grn on 982
17-03-17 22:11:21.308 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 392 ms.
17-03-17 22:11:21.308 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 22:11:21.308 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:11:21.318 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) end. Duration was 392 ms.
17-03-17 22:11:21.318 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 22:11:21.318 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:11:21.318 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:11:21.318 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 22:11:21.318 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:11:21.328 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-17 22:11:21.478 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1200
17-03-17 22:11:21.478 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1200
17-03-17 22:11:21.478 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:11:21.478 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1200
17-03-17 22:11:21.478 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1200
17-03-17 22:11:21.478 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:11:21.478 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-17 22:11:21.488 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:11:21.488 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:11:21.488 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-17 22:11:21.668 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP 1390
17-03-17 22:11:21.668 -07 000000502 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:11:21.668 -07 000000610 INF: FPGA: 'CAMDBLSNAP 447 447 215 215 37150 150' command took 2 ms to send, 1385 ms to get response, and 1397 ms overall
17-03-17 22:11:21.668 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 22:11:21.668 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.37158203125, Z-Position -0.169256575894928. ------
17-03-17 22:11:21.678 -07 000000482 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.17578 mm
17-03-17 22:11:21.678 -07 000000482 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:11:21.678 -07 000000448 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-17 22:11:21.678 -07 000000448 INF: Y Motor: Moving to 68.2126 mm, started at 67.3716 mm, delta = 0.8410 mm
17-03-17 22:11:21.678 -07 000000502 INF: Z Motor: Entering MoveAbsStepped (DAC = 38399, sync = True, waitForSettling = False)
17-03-17 22:11:21.678 -07 000000502 INF: Z Motor: Moving to -0.175779 mm, started at -0.169257 mm, distance = -6.52 um
17-03-17 22:11:21.688 -07 000000448 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:11:21.688 -07 000000478 INF: FPGA: Recv YRDPOS 137977
17-03-17 22:11:21.698 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:11:21.698 -07 000000448 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 22:11:21.698 -07 000000448 INF: Y Motor: Encoder = 137977 = motor step 107794.5 = 67.3716 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:11:21.698 -07 000000448 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:11:21.698 -07 000000448 INF: Y Motor: Moving 1346 steps-23
17-03-17 22:11:21.698 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:11:21.708 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-17 22:11:21.828 -07 000000502 INF: FPGA: Xmit ZDACW 38399\n [Z Motor]
17-03-17 22:11:21.828 -07 000000012 INF: FPGA: Recv ZDACW
17-03-17 22:11:21.838 -07 000000502 INF: FPGA: 'ZDACW 38399' command took 124 ms to send, 0 ms to get response, and 155 ms overall
17-03-17 22:11:21.838 -07 000000448 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:11:21.848 -07 000000569 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:11:21.858 -07 000000502 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:11:21.858 -07 000000478 INF: FPGA: Recv ZDACR 38399
17-03-17 22:11:21.868 -07 000000502 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:11:21.868 -07 000000502 INF: Z Motor: MoveAbsStepped took 186 ms (did NOT wait for settling yet))
17-03-17 22:11:21.888 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 410 ms.
17-03-17 22:11:21.888 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-17 22:11:21.888 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:11:21.888 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 407 ms.
17-03-17 22:11:21.898 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-17 22:11:21.898 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:11:21.898 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:11:21.898 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 417 ms.
17-03-17 22:11:21.898 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:11:21.908 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 419 ms.
17-03-17 22:11:21.948 -07 000000486 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:11:21.948 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 59. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=945, R2=968, Total=1913. Warn if over 250 bubbles per interval.
17-03-17 22:11:22.048 -07 000000561 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:11:22.048 -07 000000569 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 218 ms overall
17-03-17 22:11:22.208 -07 000000438 INF: FPGA: Recv YMVTILE
17-03-17 22:11:22.208 -07 000000448 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 517 ms overall
17-03-17 22:11:22.248 -07 000000448 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:11:22.258 -07 000000618 INF: FPGA: Recv YRDPOS 139683
17-03-17 22:11:22.258 -07 000000448 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 5 ms overall
17-03-17 22:11:22.258 -07 000000448 INF: Y Motor: Encoder = 139683 = motor step 109127.3 = 68.2046 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:11:22.258 -07 000000448 INF: Y Motor: Position error before settling (table move) = -16 encoder counts (-0.008 mm)
17-03-17 22:11:22.258 -07 000000448 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 517 ms, distance = 0.841 mm, average velocity = 1.627 mm/sec
17-03-17 22:11:23.208 -07 000000448 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:11:23.208 -07 000000618 INF: FPGA: Recv YRDPOS 139683
17-03-17 22:11:23.218 -07 000000448 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:11:23.218 -07 000000448 INF: Y Motor: Encoder = 139683 = motor step 109127.3 = 68.2046 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:11:23.238 -07 000000448 INF: Y Motor: After move to 68.212608, error = -0.008018, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:11:23.238 -07 000000448 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:11:23.238 -07 000000448 INF: Y Motor: Moved to 68.2046 after 1561 ms (table move)
17-03-17 22:11:23.238 -07 000000482 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175779 mm (DAC = 38399)
17-03-17 22:11:23.238 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:23.248 -07 000000551 INF: FPGA: Recv ZSGSRD 36654
17-03-17 22:11:23.248 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 22:11:23.248 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:23.248 -07 000000502 INF: FPGA: Recv ZSGSRD 36651
17-03-17 22:11:23.258 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:11:23.258 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:23.258 -07 000000448 INF: FPGA: Recv ZSGSRD 36657
17-03-17 22:11:23.268 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:23.268 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:23.268 -07 000000459 INF: FPGA: Recv ZSGSRD 36648
17-03-17 22:11:23.278 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:23.278 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:23.278 -07 000000502 INF: FPGA: Recv ZSGSRD 36661
17-03-17 22:11:23.288 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:23.288 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:23.288 -07 000000438 INF: FPGA: Recv ZSGSRD 36655
17-03-17 22:11:23.298 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:23.298 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:23.298 -07 000000561 INF: FPGA: Recv ZSGSRD 36648
17-03-17 22:11:23.308 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:23.308 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:23.308 -07 000000424 INF: FPGA: Recv ZSGSRD 36648
17-03-17 22:11:23.318 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:23.318 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:23.318 -07 000000486 INF: FPGA: Recv ZSGSRD 36649
17-03-17 22:11:23.328 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:23.328 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:23.328 -07 000000012 INF: FPGA: Recv ZSGSRD 36658
17-03-17 22:11:23.338 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:23.338 -07 000000482 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:11:23.338 -07 000000502 INF: FPGA: Recv ZPIEZORD 32980
17-03-17 22:11:23.348 -07 000000482 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:23.348 -07 000000482 INF: Z Motor: Piezo is near 50.5 V (nominally 0 to 100 V), expect near 58.6 V, since DAC is at 5.859 V. Piezo Error = -8.1 V.
17-03-17 22:11:23.348 -07 000000482 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.8 um, Read 10 ADC samples: Avg = 36653 (-174.9 uncal um), Error = 0.9 uncal um, Median = 36652 (-174.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36648 (-174.9 uncal um), Max = 36661 (-175.0 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 22:11:23.348 -07 000000482 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36653, posNoise = 8, negNoise = 5
17-03-17 22:11:23.348 -07 000000482 INF: Z Motor: After move to -0.175779, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:11:23.348 -07 000000482 INF: Z Motor: Settle wait time = 1564 ms, measure time = 102 ms (allowed 150 ms), total time = 1666 ms
17-03-17 22:11:23.348 -07 000000482 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 22:11:23.398 -07 000000482 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1719 ms
17-03-17 22:11:23.398 -07 000000482 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:11:23.398 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:11:23.398 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:11:23.398 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:11:23.398 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:11:23.398 -07 000000478 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:11:23.398 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:11:23.398 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 22:11:23.398 -07 000000478 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:11:23.408 -07 000000478 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:11:23.408 -07 000000478 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:11:23.408 -07 000000478 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 22:11:23.408 -07 000000478 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 22:11:23.418 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:11:23.458 -07 000000618 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:11:23.658 -07 000000478 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:11:23.658 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:11:23.658 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:11:23.668 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 22:11:23.698 -07 000000486 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:11:23.698 -07 000000569 INF: FPGA: Recv CAMSNAP
17-03-17 22:11:23.698 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 285 ms overall
17-03-17 22:11:23.778 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 22:11:23.778 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:11:23.778 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:11:23.778 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 116 ms.
17-03-17 22:11:23.798 -07 000000561 INF: Autofocus start
17-03-17 22:11:23.798 -07 000000561 INF: MeasureProfile start
17-03-17 22:11:23.798 -07 000000551 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:11:23.798 -07 000000459 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:11:23.808 -07 000000551 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:11:23.808 -07 000000551 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:11:23.808 -07 000000561 INF: MeasureProfile done
17-03-17 22:11:23.808 -07 000000561 INF: X=-32  Z correction [um]=-0.2344
17-03-17 22:11:23.808 -07 000000561 INF: Autofocus finished
17-03-17 22:11:24.008 -07 000000012 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:11:24.008 -07 000000551 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-17 22:11:24.008 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.20458984375, Z-position -0.175789999643099. ----------
17-03-17 22:11:24.008 -07 000000610 INF: Cycle	60	Tile	11	Exposure Settings		A	447	G	215	T	215	C	447
17-03-17 22:11:24.018 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36860, sync = True, waitForSettling = True)
17-03-17 22:11:24.018 -07 000000610 INF: Z Motor: Moving to -0.168734 mm, started at -0.175790 mm, distance = 7.06 um
17-03-17 22:11:24.018 -07 000000610 INF: FPGA: Xmit ZDACW 36860\n [Z Motor]
17-03-17 22:11:24.018 -07 000000459 INF: FPGA: Recv ZDACW
17-03-17 22:11:24.028 -07 000000610 INF: FPGA: 'ZDACW 36860' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:11:24.028 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:11:24.028 -07 000000486 INF: FPGA: Recv ZDACR 36860
17-03-17 22:11:24.038 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:24.038 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:11:24.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:24.188 -07 000000012 INF: FPGA: Recv ZSGSRD 35553
17-03-17 22:11:24.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:11:24.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:24.198 -07 000000551 INF: FPGA: Recv ZSGSRD 35564
17-03-17 22:11:24.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:24.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:24.208 -07 000000561 INF: FPGA: Recv ZSGSRD 35554
17-03-17 22:11:24.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:24.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:24.218 -07 000000627 INF: FPGA: Recv ZSGSRD 35555
17-03-17 22:11:24.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:24.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:24.228 -07 000000459 INF: FPGA: Recv ZSGSRD 35555
17-03-17 22:11:24.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:24.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:24.238 -07 000000551 INF: FPGA: Recv ZSGSRD 35558
17-03-17 22:11:24.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:24.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:24.248 -07 000000478 INF: FPGA: Recv ZSGSRD 35560
17-03-17 22:11:24.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:24.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:24.258 -07 000000459 INF: FPGA: Recv ZSGSRD 35552
17-03-17 22:11:24.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:24.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:24.268 -07 000000486 INF: FPGA: Recv ZSGSRD 35555
17-03-17 22:11:24.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:24.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:24.278 -07 000000478 INF: FPGA: Recv ZSGSRD 35546
17-03-17 22:11:24.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:24.288 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:11:24.288 -07 000000482 INF: FPGA: Recv ZPIEZORD 31490
17-03-17 22:11:24.298 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:24.298 -07 000000610 INF: Z Motor: Piezo is near 47.3 V (nominally 0 to 100 V), expect near 56.2 V, since DAC is at 5.624 V. Piezo Error = -9.0 V.
17-03-17 22:11:24.298 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.7 um, Read 10 ADC samples: Avg = 35555 (-167.9 uncal um), Error = 0.9 uncal um, Median = 35555 (-167.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 35546 (-167.8 uncal um), Max = 35564 (-167.9 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 22:11:24.298 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35555, posNoise = 9, negNoise = 9
17-03-17 22:11:24.298 -07 000000610 INF: Z Motor: After move to -0.168734, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:11:24.298 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 22:11:24.298 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:11:24.298 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:11:24.298 -07 000000478 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:11:24.298 -07 000000448 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:11:24.298 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:11:24.298 -07 000000551 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:11:24.298 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:11:24.298 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:11:24.298 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:11:24.298 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:11:24.298 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:11:24.298 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:11:24.308 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:11:24.308 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:11:24.308 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:11:24.308 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:11:24.318 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 11 ms.
17-03-17 22:11:24.318 -07 000000551 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 22:11:24.318 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 12 ms.
17-03-17 22:11:24.318 -07 000000448 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 18 ms.
17-03-17 22:11:24.318 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 447 447 215 215 37037 150\n [Camera]
17-03-17 22:11:24.518 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:11:24.968 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 639
17-03-17 22:11:24.968 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 639
17-03-17 22:11:24.968 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:11:24.968 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:11:24.968 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 22:11:24.968 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 639
17-03-17 22:11:24.968 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 639
17-03-17 22:11:24.968 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:11:24.968 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:11:24.968 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 1479623496, 0x0, 418435064) start.
17-03-17 22:11:25.158 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37037 832
17-03-17 22:11:25.308 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning grn on 982
17-03-17 22:11:25.358 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 1479623496, 0x0, 418435064) end. Duration was 386 ms.
17-03-17 22:11:25.358 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 22:11:25.358 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:11:25.358 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 390 ms.
17-03-17 22:11:25.358 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 22:11:25.358 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:11:25.358 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:11:25.368 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:11:25.368 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 22:11:25.368 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 22:11:25.528 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1197
17-03-17 22:11:25.528 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1197
17-03-17 22:11:25.528 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:11:25.528 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1197
17-03-17 22:11:25.528 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1197
17-03-17 22:11:25.528 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:11:25.528 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) start.
17-03-17 22:11:25.528 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:11:25.528 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:11:25.528 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-17 22:11:25.718 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP 1390
17-03-17 22:11:25.718 -07 000000486 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:11:25.718 -07 000000610 INF: FPGA: 'CAMDBLSNAP 447 447 215 215 37037 150' command took 2 ms to send, 1393 ms to get response, and 1397 ms overall
17-03-17 22:11:25.718 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 22:11:25.718 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.20458984375, Z-Position -0.168736214711446. ------
17-03-17 22:11:25.718 -07 000000459 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:11:25.718 -07 000000569 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.17535 mm
17-03-17 22:11:25.718 -07 000000569 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:11:25.728 -07 000000424 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-17 22:11:25.728 -07 000000424 INF: Y Motor: Moving to 69.0426 mm, started at 68.2046 mm, delta = 0.8380 mm
17-03-17 22:11:25.728 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:11:25.728 -07 000000012 INF: Z Motor: Entering MoveAbsStepped (DAC = 38304, sync = True, waitForSettling = False)
17-03-17 22:11:25.728 -07 000000012 INF: Z Motor: Moving to -0.175344 mm, started at -0.168736 mm, distance = -6.61 um
17-03-17 22:11:25.728 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:11:25.728 -07 000000459 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 22:11:25.728 -07 000000486 INF: FPGA: Recv YRDPOS 139684
17-03-17 22:11:25.738 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:25.738 -07 000000424 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:11:25.738 -07 000000012 INF: FPGA: Xmit ZDACW 38304\n [Z Motor]
17-03-17 22:11:25.738 -07 000000486 INF: FPGA: Recv ZDACW
17-03-17 22:11:25.738 -07 000000424 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:11:25.738 -07 000000424 INF: Y Motor: Moving 1340 steps-16
17-03-17 22:11:25.748 -07 000000012 INF: FPGA: 'ZDACW 38304' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-17 22:11:25.748 -07 000000459 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:11:25.758 -07 000000424 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:11:25.768 -07 000000012 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:11:25.768 -07 000000627 INF: FPGA: Recv ZDACR 38304
17-03-17 22:11:25.778 -07 000000012 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:11:25.778 -07 000000012 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-17 22:11:25.918 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 390 ms.
17-03-17 22:11:25.918 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 22:11:25.918 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:11:25.918 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) end. Duration was 394 ms.
17-03-17 22:11:25.918 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 22:11:25.918 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:11:25.918 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:11:25.928 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:11:25.928 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 22:11:25.928 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 22:11:25.948 -07 000000012 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:11:25.948 -07 000000459 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 221 ms overall
17-03-17 22:11:25.998 -07 000000561 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 60, FrontChillerTemperature: 4.02213,
17-03-17 22:11:26.128 -07 000000551 INF: FPGA: Recv YMVTILE
17-03-17 22:11:26.128 -07 000000424 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 391 ms overall
17-03-17 22:11:26.168 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:11:26.178 -07 000000438 INF: FPGA: Recv YRDPOS 141366
17-03-17 22:11:26.178 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:11:26.178 -07 000000424 INF: Y Motor: Encoder = 141366 = motor step 110442.2 = 69.0264 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:11:26.178 -07 000000424 INF: Y Motor: Position error before settling (table move) = -33 encoder counts (-0.016 mm)
17-03-17 22:11:26.178 -07 000000424 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 391 ms, distance = 0.838 mm, average velocity = 2.143 mm/sec
17-03-17 22:11:26.948 -07 000000482 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:11:26.948 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 59. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=945, R2=968, Total=1913. Warn if over 250 bubbles per interval.
17-03-17 22:11:27.128 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:11:27.128 -07 000000502 INF: FPGA: Recv YRDPOS 141367
17-03-17 22:11:27.138 -07 000000424 INF: FPGA: 'YRDPOS' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:27.138 -07 000000424 INF: Y Motor: Encoder = 141367 = motor step 110443.0 = 69.0269 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:11:27.158 -07 000000424 INF: Y Motor: After move to 69.042610, error = -0.015755, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:11:27.158 -07 000000424 INF: Y Motor: Position error after settling (table move) = -32 encoder counts (-0.016 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 22:11:27.158 -07 000000424 INF: Y Motor: Moved to 69.0269 after 1433 ms (table move)
17-03-17 22:11:27.158 -07 000000569 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175344 mm (DAC = 38304)
17-03-17 22:11:27.158 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:27.168 -07 000000459 INF: FPGA: Recv ZSGSRD 36590
17-03-17 22:11:27.168 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-17 22:11:27.168 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:27.168 -07 000000618 INF: FPGA: Recv ZSGSRD 36583
17-03-17 22:11:27.178 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:11:27.178 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:27.178 -07 000000448 INF: FPGA: Recv ZSGSRD 36573
17-03-17 22:11:27.188 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:27.188 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:27.188 -07 000000618 INF: FPGA: Recv ZSGSRD 36589
17-03-17 22:11:27.198 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:27.198 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:27.198 -07 000000502 INF: FPGA: Recv ZSGSRD 36592
17-03-17 22:11:27.208 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:27.208 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:27.208 -07 000000438 INF: FPGA: Recv ZSGSRD 36589
17-03-17 22:11:27.218 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:27.218 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:27.218 -07 000000618 INF: FPGA: Recv ZSGSRD 36580
17-03-17 22:11:27.228 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:27.228 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:27.228 -07 000000438 INF: FPGA: Recv ZSGSRD 36586
17-03-17 22:11:27.238 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:27.238 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:27.238 -07 000000502 INF: FPGA: Recv ZSGSRD 36584
17-03-17 22:11:27.248 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:27.248 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:27.248 -07 000000438 INF: FPGA: Recv ZSGSRD 36583
17-03-17 22:11:27.258 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:27.258 -07 000000569 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:11:27.258 -07 000000502 INF: FPGA: Recv ZPIEZORD 32891
17-03-17 22:11:27.268 -07 000000569 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:27.268 -07 000000569 INF: Z Motor: Piezo is near 50.3 V (nominally 0 to 100 V), expect near 58.4 V, since DAC is at 5.845 V. Piezo Error = -8.2 V.
17-03-17 22:11:27.268 -07 000000569 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.3 um, Read 10 ADC samples: Avg = 36585 (-174.5 uncal um), Error = 0.9 uncal um, Median = 36585 (-174.5 uncal um), StdDev = 6 (0.0 uncal um), Range = 19 (0.1 uncal um), Min = 36573 (-174.4 uncal um), Max = 36592 (-174.5 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 12 (0.1 uncal um)
17-03-17 22:11:27.268 -07 000000569 INF: Z Motor: ADC noise = 12, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36585, posNoise = 7, negNoise = 12
17-03-17 22:11:27.268 -07 000000569 INF: Z Motor: After move to -0.175344, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:11:27.268 -07 000000569 INF: Z Motor: Settle wait time = 1438 ms, measure time = 101 ms (allowed 150 ms), total time = 1539 ms
17-03-17 22:11:27.268 -07 000000569 INF: Z Motor: Waiting extra 49 ms after reading position to reach expected total of 150 ms
17-03-17 22:11:27.318 -07 000000569 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1591 ms
17-03-17 22:11:27.318 -07 000000569 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:11:27.318 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:11:27.318 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:11:27.318 -07 000000448 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:11:27.318 -07 000000478 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:11:27.328 -07 000000486 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:11:27.328 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:11:27.328 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 22:11:27.328 -07 000000486 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:11:27.328 -07 000000486 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:11:27.328 -07 000000486 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:11:27.338 -07 000000486 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 22:11:27.338 -07 000000486 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 22:11:27.338 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:11:27.378 -07 000000486 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:11:27.578 -07 000000012 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:11:27.578 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:11:27.588 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:11:27.588 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 22:11:27.618 -07 000000482 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:11:27.618 -07 000000551 INF: FPGA: Recv CAMSNAP
17-03-17 22:11:27.618 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 284 ms overall
17-03-17 22:11:27.708 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 117 ms.
17-03-17 22:11:27.708 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:11:27.708 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:11:27.708 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 120 ms.
17-03-17 22:11:27.718 -07 000000459 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:11:27.718 -07 000000482 INF: Autofocus start
17-03-17 22:11:27.718 -07 000000482 INF: MeasureProfile start
17-03-17 22:11:27.718 -07 000000448 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:11:27.728 -07 000000459 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 22:11:27.728 -07 000000459 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:11:27.738 -07 000000482 INF: MeasureProfile done
17-03-17 22:11:27.738 -07 000000482 INF: X=16  Z correction [um]=0.01042744
17-03-17 22:11:27.738 -07 000000482 INF: Autofocus finished
17-03-17 22:11:27.928 -07 000000618 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:11:27.928 -07 000000459 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:11:27.928 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02685546875, Z-position -0.17535315321746. ----------
17-03-17 22:11:27.928 -07 000000610 INF: Cycle	60	Tile	12	Exposure Settings		A	447	G	215	T	215	C	447
17-03-17 22:11:27.938 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36819, sync = True, waitForSettling = True)
17-03-17 22:11:27.938 -07 000000610 INF: Z Motor: Moving to -0.168547 mm, started at -0.175353 mm, distance = 6.81 um
17-03-17 22:11:27.938 -07 000000610 INF: FPGA: Xmit ZDACW 36819\n [Z Motor]
17-03-17 22:11:27.938 -07 000000448 INF: FPGA: Recv ZDACW
17-03-17 22:11:27.948 -07 000000610 INF: FPGA: 'ZDACW 36819' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:11:27.948 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:11:27.948 -07 000000424 INF: FPGA: Recv ZDACR 36819
17-03-17 22:11:27.958 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:27.958 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:11:28.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:28.108 -07 000000438 INF: FPGA: Recv ZSGSRD 35531
17-03-17 22:11:28.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:11:28.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:28.118 -07 000000561 INF: FPGA: Recv ZSGSRD 35532
17-03-17 22:11:28.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:28.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:28.128 -07 000000569 INF: FPGA: Recv ZSGSRD 35525
17-03-17 22:11:28.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:28.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:28.138 -07 000000627 INF: FPGA: Recv ZSGSRD 35529
17-03-17 22:11:28.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:28.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:28.148 -07 000000569 INF: FPGA: Recv ZSGSRD 35521
17-03-17 22:11:28.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:28.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:28.158 -07 000000459 INF: FPGA: Recv ZSGSRD 35532
17-03-17 22:11:28.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:28.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:28.168 -07 000000627 INF: FPGA: Recv ZSGSRD 35531
17-03-17 22:11:28.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:28.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:28.178 -07 000000482 INF: FPGA: Recv ZSGSRD 35524
17-03-17 22:11:28.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:28.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:28.188 -07 000000627 INF: FPGA: Recv ZSGSRD 35528
17-03-17 22:11:28.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:28.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:28.198 -07 000000482 INF: FPGA: Recv ZSGSRD 35527
17-03-17 22:11:28.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:28.208 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:11:28.208 -07 000000486 INF: FPGA: Recv ZPIEZORD 31498
17-03-17 22:11:28.218 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:28.218 -07 000000610 INF: Z Motor: Piezo is near 47.3 V (nominally 0 to 100 V), expect near 56.2 V, since DAC is at 5.618 V. Piezo Error = -8.9 V.
17-03-17 22:11:28.218 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.5 um, Read 10 ADC samples: Avg = 35528 (-167.7 uncal um), Error = 0.9 uncal um, Median = 35528 (-167.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35521 (-167.6 uncal um), Max = 35532 (-167.7 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 22:11:28.218 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35528, posNoise = 4, negNoise = 7
17-03-17 22:11:28.218 -07 000000610 INF: Z Motor: After move to -0.168547, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:11:28.218 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 22:11:28.218 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:11:28.218 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:11:28.218 -07 000000459 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:11:28.218 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:11:28.218 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:11:28.218 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:11:28.218 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:11:28.218 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:11:28.218 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 22:11:28.218 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:11:28.218 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:11:28.218 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:11:28.228 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:11:28.228 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:11:28.228 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:11:28.228 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:11:28.228 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 22:11:28.228 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 22:11:28.238 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 22:11:28.238 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 22:11:28.238 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 447 447 215 215 36996 150\n [Camera]
17-03-17 22:11:28.438 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:11:28.878 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 639
17-03-17 22:11:28.878 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 639
17-03-17 22:11:28.888 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:11:28.888 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 639
17-03-17 22:11:28.888 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 639
17-03-17 22:11:28.888 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:11:28.898 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:11:28.898 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-17 22:11:28.898 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:11:28.898 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-17 22:11:29.078 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36996 832
17-03-17 22:11:29.228 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP turning grn on 982
17-03-17 22:11:29.278 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 384 ms.
17-03-17 22:11:29.278 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 22:11:29.278 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:11:29.278 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 383 ms.
17-03-17 22:11:29.278 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-17 22:11:29.278 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:11:29.288 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 22:11:29.288 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 22:11:29.288 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:11:29.298 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-17 22:11:29.438 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1197
17-03-17 22:11:29.438 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1197
17-03-17 22:11:29.438 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:11:29.448 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1197
17-03-17 22:11:29.448 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:11:29.448 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1197
17-03-17 22:11:29.448 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 22:11:29.448 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:11:29.448 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:11:29.448 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 1479623496, 0x0, 418435064) start.
17-03-17 22:11:29.628 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP 1390
17-03-17 22:11:29.628 -07 000000627 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:11:29.628 -07 000000610 INF: FPGA: 'CAMDBLSNAP 447 447 215 215 36996 150' command took 2 ms to send, 1389 ms to get response, and 1397 ms overall
17-03-17 22:11:29.638 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 22:11:29.638 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.02685546875, Z-Position -0.168562760983618. ------
17-03-17 22:11:29.638 -07 000000478 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:11:29.638 -07 000000424 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.17497 mm
17-03-17 22:11:29.638 -07 000000424 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:11:29.648 -07 000000627 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:11:29.648 -07 000000478 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 22:11:29.648 -07 000000478 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:11:29.648 -07 000000561 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-17 22:11:29.648 -07 000000561 INF: Y Motor: Moving to 69.8726 mm, started at 69.0269 mm, delta = 0.8458 mm
17-03-17 22:11:29.648 -07 000000482 INF: Z Motor: Entering MoveAbsStepped (DAC = 38223, sync = True, waitForSettling = False)
17-03-17 22:11:29.648 -07 000000482 INF: Z Motor: Moving to -0.174974 mm, started at -0.168563 mm, distance = -6.41 um
17-03-17 22:11:29.658 -07 000000482 INF: FPGA: Xmit ZDACW 38223\n [Z Motor]
17-03-17 22:11:29.658 -07 000000502 INF: FPGA: Recv ZDACW
17-03-17 22:11:29.668 -07 000000482 INF: FPGA: 'ZDACW 38223' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-17 22:11:29.668 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:11:29.668 -07 000000627 INF: FPGA: Recv YRDPOS 141367
17-03-17 22:11:29.678 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-17 22:11:29.678 -07 000000561 INF: Y Motor: Encoder = 141367 = motor step 110443.0 = 69.0269 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:11:29.678 -07 000000561 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:11:29.678 -07 000000561 INF: Y Motor: Moving 1353 steps-33
17-03-17 22:11:29.678 -07 000000482 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:11:29.678 -07 000000012 INF: FPGA: Recv ZDACR 38223
17-03-17 22:11:29.688 -07 000000482 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:11:29.688 -07 000000482 INF: Z Motor: MoveAbsStepped took 37 ms (did NOT wait for settling yet))
17-03-17 22:11:29.688 -07 000000561 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:11:29.848 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 1479623496, 0x0, 418435064) end. Duration was 402 ms.
17-03-17 22:11:29.848 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 22:11:29.848 -07 000000569 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:11:29.848 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:11:29.848 -07 000000478 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-17 22:11:29.848 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 403 ms.
17-03-17 22:11:29.848 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 22:11:29.848 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:11:29.848 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 22:11:29.848 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 22:11:29.848 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-17 22:11:29.858 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-17 22:11:30.058 -07 000000627 INF: FPGA: Recv YMVTILE
17-03-17 22:11:30.058 -07 000000561 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 388 ms overall
17-03-17 22:11:30.098 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:11:30.108 -07 000000486 INF: FPGA: Recv YRDPOS 143079
17-03-17 22:11:30.108 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:11:30.108 -07 000000561 INF: Y Motor: Encoder = 143079 = motor step 111780.5 = 69.8628 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:11:30.108 -07 000000561 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-17 22:11:30.108 -07 000000561 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.846 mm, average velocity = 2.180 mm/sec
17-03-17 22:11:31.058 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:11:31.058 -07 000000486 INF: FPGA: Recv YRDPOS 143079
17-03-17 22:11:31.068 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:31.068 -07 000000561 INF: Y Motor: Encoder = 143079 = motor step 111780.5 = 69.8628 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:11:31.088 -07 000000561 INF: Y Motor: After move to 69.872612, error = -0.009819, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:11:31.088 -07 000000561 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:11:31.088 -07 000000561 INF: Y Motor: Moved to 69.8628 after 1444 ms (table move)
17-03-17 22:11:31.088 -07 000000424 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174974 mm (DAC = 38223)
17-03-17 22:11:31.088 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:31.098 -07 000000448 INF: FPGA: Recv ZSGSRD 36529
17-03-17 22:11:31.098 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-17 22:11:31.098 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:31.098 -07 000000569 INF: FPGA: Recv ZSGSRD 36536
17-03-17 22:11:31.108 -07 000000424 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:11:31.108 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:31.108 -07 000000623 INF: FPGA: Recv ZSGSRD 36532
17-03-17 22:11:31.118 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:31.118 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:31.118 -07 000000482 INF: FPGA: Recv ZSGSRD 36527
17-03-17 22:11:31.128 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:31.128 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:31.128 -07 000000551 INF: FPGA: Recv ZSGSRD 36526
17-03-17 22:11:31.138 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:31.138 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:31.138 -07 000000448 INF: FPGA: Recv ZSGSRD 36531
17-03-17 22:11:31.148 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:31.148 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:31.148 -07 000000551 INF: FPGA: Recv ZSGSRD 36518
17-03-17 22:11:31.158 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:31.158 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:31.158 -07 000000459 INF: FPGA: Recv ZSGSRD 36530
17-03-17 22:11:31.168 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:31.168 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:31.168 -07 000000486 INF: FPGA: Recv ZSGSRD 36528
17-03-17 22:11:31.178 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:31.178 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:31.178 -07 000000502 INF: FPGA: Recv ZSGSRD 36527
17-03-17 22:11:31.188 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:31.188 -07 000000424 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:11:31.188 -07 000000478 INF: FPGA: Recv ZPIEZORD 32827
17-03-17 22:11:31.198 -07 000000424 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:31.198 -07 000000424 INF: Z Motor: Piezo is near 50.1 V (nominally 0 to 100 V), expect near 58.3 V, since DAC is at 5.832 V. Piezo Error = -8.2 V.
17-03-17 22:11:31.198 -07 000000424 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.0 um, Read 10 ADC samples: Avg = 36528 (-174.1 uncal um), Error = 0.9 uncal um, Median = 36528 (-174.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 36518 (-174.0 uncal um), Max = 36536 (-174.2 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-17 22:11:31.198 -07 000000424 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36528, posNoise = 8, negNoise = 10
17-03-17 22:11:31.198 -07 000000424 INF: Z Motor: After move to -0.174974, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:11:31.198 -07 000000424 INF: Z Motor: Settle wait time = 1446 ms, measure time = 102 ms (allowed 150 ms), total time = 1548 ms
17-03-17 22:11:31.198 -07 000000424 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 22:11:31.248 -07 000000424 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1603 ms
17-03-17 22:11:31.248 -07 000000424 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:11:31.248 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:11:31.248 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:11:31.248 -07 000000448 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:11:31.248 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:11:31.248 -07 000000012 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:11:31.248 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:11:31.248 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 22:11:31.248 -07 000000012 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:11:31.258 -07 000000012 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 22:11:31.258 -07 000000012 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:11:31.268 -07 000000012 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 22:11:31.268 -07 000000012 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 22:11:31.268 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:11:31.308 -07 000000424 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:11:31.358 -07 000000561 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 60, FrontChillerTemperature: 4.001704,
17-03-17 22:11:31.508 -07 000000618 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:11:31.508 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:11:31.518 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:11:31.518 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610875264, 0x0, 559484976) start.
17-03-17 22:11:31.548 -07 000000551 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:11:31.548 -07 000000424 INF: FPGA: Recv CAMSNAP
17-03-17 22:11:31.548 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 284 ms overall
17-03-17 22:11:31.628 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610875264, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 22:11:31.628 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:11:31.628 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 22:11:31.628 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 22:11:31.648 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:11:31.648 -07 000000561 INF: Autofocus start
17-03-17 22:11:31.648 -07 000000561 INF: MeasureProfile start
17-03-17 22:11:31.648 -07 000000478 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:11:31.658 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 22:11:31.658 -07 000000618 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:11:31.658 -07 000000561 INF: MeasureProfile done
17-03-17 22:11:31.658 -07 000000561 INF: X=-16  Z correction [um]=-0.1496812
17-03-17 22:11:31.658 -07 000000561 INF: Autofocus finished
17-03-17 22:11:31.858 -07 000000012 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:11:31.858 -07 000000618 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 196 ms to get response, and 205 ms overall
17-03-17 22:11:31.858 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86279296875, Z-position -0.174986973125379. ----------
17-03-17 22:11:31.868 -07 000000610 INF: Cycle	60	Tile	13	Exposure Settings		A	447	G	215	T	215	C	447
17-03-17 22:11:31.868 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36703, sync = True, waitForSettling = True)
17-03-17 22:11:31.868 -07 000000610 INF: Z Motor: Moving to -0.168016 mm, started at -0.174987 mm, distance = 6.97 um
17-03-17 22:11:31.868 -07 000000610 INF: FPGA: Xmit ZDACW 36703\n [Z Motor]
17-03-17 22:11:31.868 -07 000000012 INF: FPGA: Recv ZDACW
17-03-17 22:11:31.878 -07 000000610 INF: FPGA: 'ZDACW 36703' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 22:11:31.878 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:11:31.878 -07 000000627 INF: FPGA: Recv ZDACR 36703
17-03-17 22:11:31.888 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:31.888 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:11:31.948 -07 000000486 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:11:31.948 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 59. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=945, R2=968, Total=1913. Warn if over 250 bubbles per interval.
17-03-17 22:11:32.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:32.038 -07 000000424 INF: FPGA: Recv ZSGSRD 35446
17-03-17 22:11:32.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:11:32.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:32.048 -07 000000551 INF: FPGA: Recv ZSGSRD 35443
17-03-17 22:11:32.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:32.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:32.058 -07 000000012 INF: FPGA: Recv ZSGSRD 35441
17-03-17 22:11:32.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:32.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:32.068 -07 000000627 INF: FPGA: Recv ZSGSRD 35443
17-03-17 22:11:32.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:32.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:32.078 -07 000000448 INF: FPGA: Recv ZSGSRD 35450
17-03-17 22:11:32.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:32.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:32.088 -07 000000561 INF: FPGA: Recv ZSGSRD 35452
17-03-17 22:11:32.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:32.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:32.098 -07 000000012 INF: FPGA: Recv ZSGSRD 35444
17-03-17 22:11:32.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:32.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:32.108 -07 000000627 INF: FPGA: Recv ZSGSRD 35441
17-03-17 22:11:32.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:32.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:32.118 -07 000000502 INF: FPGA: Recv ZSGSRD 35450
17-03-17 22:11:32.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:32.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:32.128 -07 000000561 INF: FPGA: Recv ZSGSRD 35443
17-03-17 22:11:32.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:32.138 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:11:32.138 -07 000000623 INF: FPGA: Recv ZPIEZORD 31393
17-03-17 22:11:32.148 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:32.148 -07 000000610 INF: Z Motor: Piezo is near 47.1 V (nominally 0 to 100 V), expect near 56.0 V, since DAC is at 5.601 V. Piezo Error = -8.9 V.
17-03-17 22:11:32.148 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.0 um, Read 10 ADC samples: Avg = 35445 (-167.2 uncal um), Error = 0.9 uncal um, Median = 35444 (-167.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35441 (-167.1 uncal um), Max = 35452 (-167.2 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 22:11:32.148 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35445, posNoise = 7, negNoise = 4
17-03-17 22:11:32.148 -07 000000610 INF: Z Motor: After move to -0.168016, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:11:32.148 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 22:11:32.148 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:11:32.148 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:11:32.148 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:11:32.148 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:11:32.158 -07 000000627 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:11:32.158 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:11:32.158 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:11:32.158 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:11:32.158 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:11:32.158 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:11:32.158 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:11:32.158 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:11:32.158 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 22:11:32.158 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:11:32.158 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 22:11:32.158 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:11:32.178 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 22:11:32.178 -07 000000627 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 22:11:32.178 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 22:11:32.178 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 22:11:32.178 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 447 447 215 215 36880 150\n [Camera]
17-03-17 22:11:32.378 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP turning red on 194
17-03-17 22:11:32.828 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 639
17-03-17 22:11:32.828 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 639
17-03-17 22:11:32.828 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:11:32.828 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:11:32.828 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start.
17-03-17 22:11:32.828 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 639
17-03-17 22:11:32.828 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 639
17-03-17 22:11:32.828 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:11:32.828 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:11:32.828 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) start.
17-03-17 22:11:33.018 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36880 832
17-03-17 22:11:33.168 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP turning grn on 982
17-03-17 22:11:33.208 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 378 ms.
17-03-17 22:11:33.208 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-17 22:11:33.208 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:11:33.208 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 22:11:33.208 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-17 22:11:33.208 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:11:33.208 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:11:33.208 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 22:11:33.218 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:11:33.218 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 22:11:33.388 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1197
17-03-17 22:11:33.388 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1197
17-03-17 22:11:33.388 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:11:33.388 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:11:33.388 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 22:11:33.388 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1197
17-03-17 22:11:33.388 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1197
17-03-17 22:11:33.388 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:11:33.388 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:11:33.388 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 22:11:33.578 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP 1389
17-03-17 22:11:33.578 -07 000000551 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:11:33.578 -07 000000610 INF: FPGA: 'CAMDBLSNAP 447 447 215 215 36880 150' command took 2 ms to send, 1396 ms to get response, and 1399 ms overall
17-03-17 22:11:33.578 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 22:11:33.578 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.86279296875, Z-Position -0.168029551375852. ------
17-03-17 22:11:33.588 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:11:33.588 -07 000000448 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.17449 mm
17-03-17 22:11:33.588 -07 000000448 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:11:33.708 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:11:33.708 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 124 ms overall
17-03-17 22:11:33.708 -07 000000424 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:11:33.708 -07 000000627 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-17 22:11:33.708 -07 000000627 INF: Y Motor: Moving to 70.7026 mm, started at 69.8628 mm, delta = 0.8398 mm
17-03-17 22:11:33.708 -07 000000482 INF: Z Motor: Entering MoveAbsStepped (DAC = 38116, sync = True, waitForSettling = False)
17-03-17 22:11:33.708 -07 000000482 INF: Z Motor: Moving to -0.174484 mm, started at -0.168030 mm, distance = -6.45 um
17-03-17 22:11:33.718 -07 000000482 INF: FPGA: Xmit ZDACW 38116\n [Z Motor]
17-03-17 22:11:33.718 -07 000000569 INF: FPGA: Recv ZDACW
17-03-17 22:11:33.728 -07 000000482 INF: FPGA: 'ZDACW 38116' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:11:33.728 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:11:33.728 -07 000000459 INF: FPGA: Recv YRDPOS 143079
17-03-17 22:11:33.738 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-17 22:11:33.738 -07 000000627 INF: Y Motor: Encoder = 143079 = motor step 111780.5 = 69.8628 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:11:33.738 -07 000000627 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:11:33.738 -07 000000627 INF: Y Motor: Moving 1344 steps-20
17-03-17 22:11:33.738 -07 000000482 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:11:33.738 -07 000000618 INF: FPGA: Recv ZDACR 38116
17-03-17 22:11:33.748 -07 000000482 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:11:33.748 -07 000000482 INF: Z Motor: MoveAbsStepped took 31 ms (did NOT wait for settling yet))
17-03-17 22:11:33.748 -07 000000627 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:11:33.788 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 400 ms.
17-03-17 22:11:33.788 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 22:11:33.788 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:11:33.798 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:11:33.798 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 405 ms.
17-03-17 22:11:33.798 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-17 22:11:33.798 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:11:33.798 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:11:33.798 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-17 22:11:33.798 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-17 22:11:33.918 -07 000000561 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:11:33.918 -07 000000424 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 200 ms to get response, and 202 ms overall
17-03-17 22:11:34.118 -07 000000458 INF: FPGA: Recv YMVTILE
17-03-17 22:11:34.128 -07 000000627 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 390 ms overall
17-03-17 22:11:34.168 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:11:34.178 -07 000000012 INF: FPGA: Recv YRDPOS 144769
17-03-17 22:11:34.188 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:11:34.188 -07 000000627 INF: Y Motor: Encoder = 144769 = motor step 113100.8 = 70.6880 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:11:34.188 -07 000000627 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-17 22:11:34.188 -07 000000627 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 390 ms, distance = 0.840 mm, average velocity = 2.153 mm/sec
17-03-17 22:11:35.138 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:11:35.138 -07 000000502 INF: FPGA: Recv YRDPOS 144769
17-03-17 22:11:35.148 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:11:35.148 -07 000000627 INF: Y Motor: Encoder = 144769 = motor step 113100.8 = 70.6880 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:11:35.168 -07 000000627 INF: Y Motor: After move to 70.702606, error = -0.014618, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:11:35.168 -07 000000627 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:11:35.168 -07 000000627 INF: Y Motor: Moved to 70.6880 after 1457 ms (table move)
17-03-17 22:11:35.168 -07 000000448 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174484 mm (DAC = 38116)
17-03-17 22:11:35.168 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:35.178 -07 000000458 INF: FPGA: Recv ZSGSRD 36452
17-03-17 22:11:35.178 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 3 ms to get response, and 4 ms overall
17-03-17 22:11:35.178 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:35.178 -07 000000458 INF: FPGA: Recv ZSGSRD 36446
17-03-17 22:11:35.188 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:11:35.188 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:35.188 -07 000000482 INF: FPGA: Recv ZSGSRD 36447
17-03-17 22:11:35.198 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:35.198 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:35.198 -07 000000561 INF: FPGA: Recv ZSGSRD 36446
17-03-17 22:11:35.208 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:35.208 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:35.208 -07 000000482 INF: FPGA: Recv ZSGSRD 36448
17-03-17 22:11:35.218 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:35.218 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:35.218 -07 000000561 INF: FPGA: Recv ZSGSRD 36443
17-03-17 22:11:35.228 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:35.228 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:35.228 -07 000000482 INF: FPGA: Recv ZSGSRD 36449
17-03-17 22:11:35.238 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:35.238 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:35.238 -07 000000502 INF: FPGA: Recv ZSGSRD 36453
17-03-17 22:11:35.248 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:35.248 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:35.248 -07 000000458 INF: FPGA: Recv ZSGSRD 36456
17-03-17 22:11:35.258 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:35.258 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:35.258 -07 000000482 INF: FPGA: Recv ZSGSRD 36443
17-03-17 22:11:35.268 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:35.268 -07 000000448 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:11:35.268 -07 000000561 INF: FPGA: Recv ZPIEZORD 32764
17-03-17 22:11:35.278 -07 000000448 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:35.278 -07 000000448 INF: Z Motor: Piezo is near 50.0 V (nominally 0 to 100 V), expect near 58.2 V, since DAC is at 5.816 V. Piezo Error = -8.2 V.
17-03-17 22:11:35.278 -07 000000448 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.5 um, Read 10 ADC samples: Avg = 36448 (-173.6 uncal um), Error = 0.9 uncal um, Median = 36448 (-173.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36443 (-173.6 uncal um), Max = 36456 (-173.6 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 22:11:35.278 -07 000000448 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36448, posNoise = 8, negNoise = 5
17-03-17 22:11:35.278 -07 000000448 INF: Z Motor: After move to -0.174484, error = 0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:11:35.278 -07 000000448 INF: Z Motor: Settle wait time = 1459 ms, measure time = 102 ms (allowed 150 ms), total time = 1561 ms
17-03-17 22:11:35.278 -07 000000448 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 22:11:35.328 -07 000000448 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1737 ms
17-03-17 22:11:35.328 -07 000000448 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:11:35.328 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:11:35.328 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:11:35.328 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:11:35.328 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:11:35.328 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:11:35.328 -07 000000478 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:11:35.328 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:11:35.328 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:11:35.338 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:11:35.338 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:11:35.338 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 22:11:35.338 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 22:11:35.348 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:11:35.388 -07 000000623 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:11:35.588 -07 000000502 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:11:35.588 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:11:35.588 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:11:35.588 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 22:11:35.628 -07 000000012 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:11:35.628 -07 000000424 INF: FPGA: Recv CAMSNAP
17-03-17 22:11:35.628 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 275 ms to get response, and 285 ms overall
17-03-17 22:11:35.708 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 22:11:35.708 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:11:35.708 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:11:35.708 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 22:11:35.728 -07 000000482 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:11:35.728 -07 000000424 INF: Autofocus start
17-03-17 22:11:35.728 -07 000000424 INF: MeasureProfile start
17-03-17 22:11:35.728 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:11:35.738 -07 000000482 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 22:11:35.738 -07 000000482 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:11:35.738 -07 000000424 INF: MeasureProfile done
17-03-17 22:11:35.738 -07 000000424 INF: X=32  Z correction [um]=0.09220707
17-03-17 22:11:35.738 -07 000000424 INF: Autofocus finished
17-03-17 22:11:35.938 -07 000000627 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:11:35.938 -07 000000482 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:11:35.938 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.68798828125, Z-position -0.174473036154038. ----------
17-03-17 22:11:35.938 -07 000000610 INF: Cycle	60	Tile	14	Exposure Settings		A	447	G	215	T	215	C	447
17-03-17 22:11:35.948 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36649, sync = True, waitForSettling = True)
17-03-17 22:11:35.948 -07 000000610 INF: Z Motor: Moving to -0.167768 mm, started at -0.174473 mm, distance = 6.70 um
17-03-17 22:11:35.948 -07 000000610 INF: FPGA: Xmit ZDACW 36649\n [Z Motor]
17-03-17 22:11:35.948 -07 000000482 INF: FPGA: Recv ZDACW
17-03-17 22:11:35.958 -07 000000610 INF: FPGA: 'ZDACW 36649' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:11:35.958 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:11:35.958 -07 000000561 INF: FPGA: Recv ZDACR 36649
17-03-17 22:11:35.968 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:35.968 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:11:36.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:36.118 -07 000000482 INF: FPGA: Recv ZSGSRD 35407
17-03-17 22:11:36.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:11:36.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:36.128 -07 000000561 INF: FPGA: Recv ZSGSRD 35414
17-03-17 22:11:36.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:36.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:36.138 -07 000000478 INF: FPGA: Recv ZSGSRD 35406
17-03-17 22:11:36.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:36.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:36.148 -07 000000482 INF: FPGA: Recv ZSGSRD 35402
17-03-17 22:11:36.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:36.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:36.158 -07 000000561 INF: FPGA: Recv ZSGSRD 35401
17-03-17 22:11:36.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:36.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:36.168 -07 000000482 INF: FPGA: Recv ZSGSRD 35401
17-03-17 22:11:36.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:36.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:36.178 -07 000000502 INF: FPGA: Recv ZSGSRD 35408
17-03-17 22:11:36.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:36.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:36.188 -07 000000482 INF: FPGA: Recv ZSGSRD 35408
17-03-17 22:11:36.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:36.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:36.198 -07 000000012 INF: FPGA: Recv ZSGSRD 35401
17-03-17 22:11:36.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:36.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:36.208 -07 000000502 INF: FPGA: Recv ZSGSRD 35412
17-03-17 22:11:36.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:36.218 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:11:36.218 -07 000000482 INF: FPGA: Recv ZPIEZORD 31342
17-03-17 22:11:36.228 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:36.228 -07 000000610 INF: Z Motor: Piezo is near 47.0 V (nominally 0 to 100 V), expect near 55.9 V, since DAC is at 5.592 V. Piezo Error = -9.0 V.
17-03-17 22:11:36.228 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.8 um, Read 10 ADC samples: Avg = 35406 (-166.9 uncal um), Error = 0.9 uncal um, Median = 35406 (-166.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35401 (-166.9 uncal um), Max = 35414 (-167.0 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 22:11:36.228 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35406, posNoise = 8, negNoise = 5
17-03-17 22:11:36.228 -07 000000610 INF: Z Motor: After move to -0.167768, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:11:36.228 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 22:11:36.228 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:11:36.228 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:11:36.228 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:11:36.228 -07 000000478 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:11:36.228 -07 000000551 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:11:36.228 -07 000000448 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:11:36.228 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:11:36.228 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:11:36.228 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 22:11:36.228 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:11:36.238 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:11:36.238 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:11:36.238 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 22:11:36.238 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:11:36.238 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:11:36.238 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:11:36.248 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 22:11:36.248 -07 000000448 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 22:11:36.248 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 22:11:36.248 -07 000000551 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 22:11:36.248 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 447 447 215 215 36826 150\n [Camera]
17-03-17 22:11:36.448 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:11:36.718 -07 000000551 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 60, FrontChillerTemperature: 4.019446,
17-03-17 22:11:36.898 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 639
17-03-17 22:11:36.898 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 639
17-03-17 22:11:36.898 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:11:36.898 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:11:36.898 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 22:11:36.898 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 639
17-03-17 22:11:36.898 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 639
17-03-17 22:11:36.898 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:11:36.898 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:11:36.898 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 1479623496, 0x0, 418435064) start.
17-03-17 22:11:36.948 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:11:36.948 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 59. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=945, R2=968, Total=1913. Warn if over 250 bubbles per interval.
17-03-17 22:11:37.088 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36826 832
17-03-17 22:11:37.238 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP turning grn on 982
17-03-17 22:11:37.278 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 383 ms.
17-03-17 22:11:37.278 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 22:11:37.278 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:11:37.278 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 1479623496, 0x0, 418435064) end. Duration was 380 ms.
17-03-17 22:11:37.278 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-17 22:11:37.278 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:11:37.288 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:11:37.288 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 22:11:37.288 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 22:11:37.298 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 22:11:37.448 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1197
17-03-17 22:11:37.448 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1197
17-03-17 22:11:37.458 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:11:37.458 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:11:37.458 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-17 22:11:37.458 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1197
17-03-17 22:11:37.458 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1197
17-03-17 22:11:37.458 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:11:37.458 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:11:37.458 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-17 22:11:37.648 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP 1390
17-03-17 22:11:37.648 -07 000000482 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:11:37.648 -07 000000610 INF: FPGA: 'CAMDBLSNAP 447 447 215 215 36826 150' command took 2 ms to send, 1392 ms to get response, and 1397 ms overall
17-03-17 22:11:37.648 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 22:11:37.648 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.68798828125, Z-Position -0.167779007102323. ------
17-03-17 22:11:37.648 -07 000000458 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:11:37.648 -07 000000627 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.17429 mm
17-03-17 22:11:37.648 -07 000000627 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:11:37.768 -07 000000482 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:11:37.768 -07 000000458 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 114 ms overall
17-03-17 22:11:37.768 -07 000000424 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-17 22:11:37.768 -07 000000424 INF: Y Motor: Moving to 71.5326 mm, started at 70.6880 mm, delta = 0.8446 mm
17-03-17 22:11:37.768 -07 000000448 INF: Z Motor: Entering MoveAbsStepped (DAC = 38073, sync = True, waitForSettling = False)
17-03-17 22:11:37.768 -07 000000448 INF: Z Motor: Moving to -0.174287 mm, started at -0.167779 mm, distance = -6.51 um
17-03-17 22:11:37.778 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:11:37.778 -07 000000502 INF: FPGA: Recv YRDPOS 144770
17-03-17 22:11:37.788 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-17 22:11:37.788 -07 000000458 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:11:37.788 -07 000000424 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:11:37.788 -07 000000424 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:11:37.788 -07 000000424 INF: Y Motor: Moving 1351 steps-30
17-03-17 22:11:37.798 -07 000000448 INF: FPGA: Xmit ZDACW 38073\n [Z Motor]
17-03-17 22:11:37.798 -07 000000618 INF: FPGA: Recv ZDACW
17-03-17 22:11:37.808 -07 000000424 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:11:37.808 -07 000000448 INF: FPGA: 'ZDACW 38073' command took 0 ms to send, 0 ms to get response, and 37 ms overall
17-03-17 22:11:37.818 -07 000000448 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:11:37.818 -07 000000012 INF: FPGA: Recv ZDACR 38073
17-03-17 22:11:37.828 -07 000000448 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:11:37.828 -07 000000448 INF: Z Motor: MoveAbsStepped took 57 ms (did NOT wait for settling yet))
17-03-17 22:11:37.858 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 399 ms.
17-03-17 22:11:37.858 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 22:11:37.858 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:11:37.858 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 397 ms.
17-03-17 22:11:37.858 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 22:11:37.858 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:11:37.858 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:11:37.858 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-17 22:11:37.858 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:11:37.868 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-17 22:11:37.988 -07 000000551 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:11:37.988 -07 000000458 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 223 ms overall
17-03-17 22:11:38.178 -07 000000438 INF: FPGA: Recv YMVTILE
17-03-17 22:11:38.178 -07 000000424 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 393 ms overall
17-03-17 22:11:38.228 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:11:38.228 -07 000000623 INF: FPGA: Recv YRDPOS 146469
17-03-17 22:11:38.238 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:11:38.238 -07 000000424 INF: Y Motor: Encoder = 146469 = motor step 114428.9 = 71.5181 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:11:38.238 -07 000000424 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-17 22:11:38.238 -07 000000424 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.845 mm, average velocity = 2.144 mm/sec
17-03-17 22:11:39.188 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:11:39.188 -07 000000623 INF: FPGA: Recv YRDPOS 146470
17-03-17 22:11:39.198 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:11:39.198 -07 000000424 INF: Y Motor: Encoder = 146470 = motor step 114429.7 = 71.5186 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:11:39.218 -07 000000424 INF: Y Motor: After move to 71.532608, error = -0.014053, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:11:39.218 -07 000000424 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 22:11:39.218 -07 000000424 INF: Y Motor: Moved to 71.5186 after 1451 ms (table move)
17-03-17 22:11:39.218 -07 000000627 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174287 mm (DAC = 38073)
17-03-17 22:11:39.218 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:39.228 -07 000000438 INF: FPGA: Recv ZSGSRD 36425
17-03-17 22:11:39.228 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 22:11:39.228 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:39.228 -07 000000551 INF: FPGA: Recv ZSGSRD 36427
17-03-17 22:11:39.238 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:11:39.238 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:39.238 -07 000000438 INF: FPGA: Recv ZSGSRD 36417
17-03-17 22:11:39.248 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:39.248 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:39.248 -07 000000551 INF: FPGA: Recv ZSGSRD 36427
17-03-17 22:11:39.258 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:39.258 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:39.258 -07 000000561 INF: FPGA: Recv ZSGSRD 36421
17-03-17 22:11:39.268 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:39.268 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:39.268 -07 000000478 INF: FPGA: Recv ZSGSRD 36422
17-03-17 22:11:39.278 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:39.278 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:39.278 -07 000000486 INF: FPGA: Recv ZSGSRD 36418
17-03-17 22:11:39.288 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:39.288 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:39.288 -07 000000561 INF: FPGA: Recv ZSGSRD 36416
17-03-17 22:11:39.298 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:39.298 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:39.298 -07 000000618 INF: FPGA: Recv ZSGSRD 36417
17-03-17 22:11:39.308 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:39.308 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:39.308 -07 000000551 INF: FPGA: Recv ZSGSRD 36421
17-03-17 22:11:39.318 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:39.318 -07 000000627 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:11:39.318 -07 000000486 INF: FPGA: Recv ZPIEZORD 32739
17-03-17 22:11:39.328 -07 000000627 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:39.328 -07 000000627 INF: Z Motor: Piezo is near 49.9 V (nominally 0 to 100 V), expect near 58.1 V, since DAC is at 5.810 V. Piezo Error = -8.2 V.
17-03-17 22:11:39.328 -07 000000627 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.3 um, Read 10 ADC samples: Avg = 36421 (-173.4 uncal um), Error = 0.9 uncal um, Median = 36421 (-173.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36416 (-173.4 uncal um), Max = 36427 (-173.5 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 22:11:39.328 -07 000000627 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36421, posNoise = 6, negNoise = 5
17-03-17 22:11:39.328 -07 000000627 INF: Z Motor: After move to -0.174287, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:11:39.328 -07 000000627 INF: Z Motor: Settle wait time = 1455 ms, measure time = 103 ms (allowed 150 ms), total time = 1558 ms
17-03-17 22:11:39.328 -07 000000627 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 22:11:39.378 -07 000000627 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1723 ms
17-03-17 22:11:39.378 -07 000000627 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:11:39.378 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:11:39.378 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:11:39.378 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:11:39.378 -07 000000623 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:11:39.378 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:11:39.378 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:11:39.378 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:11:39.378 -07 000000623 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:11:39.388 -07 000000623 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:11:39.388 -07 000000623 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:11:39.398 -07 000000623 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 22:11:39.398 -07 000000623 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 22:11:39.398 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:11:39.448 -07 000000627 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:11:39.648 -07 000000618 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:11:39.648 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:11:39.648 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:11:39.648 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 22:11:39.688 -07 000000486 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:11:39.688 -07 000000551 INF: FPGA: Recv CAMSNAP
17-03-17 22:11:39.688 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 284 ms overall
17-03-17 22:11:39.758 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 22:11:39.758 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:11:39.758 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 22:11:39.758 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 22:11:39.788 -07 000000448 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:11:39.788 -07 000000486 INF: Autofocus start
17-03-17 22:11:39.788 -07 000000486 INF: MeasureProfile start
17-03-17 22:11:39.788 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:11:39.798 -07 000000448 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:11:39.798 -07 000000448 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:11:39.798 -07 000000486 INF: MeasureProfile done
17-03-17 22:11:39.798 -07 000000486 INF: X=-16  Z correction [um]=-0.1496812
17-03-17 22:11:39.798 -07 000000486 INF: Autofocus finished
17-03-17 22:11:39.998 -07 000000478 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:11:39.998 -07 000000448 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:11:39.998 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.5185546875, Z-position -0.174299582426211. ----------
17-03-17 22:11:39.998 -07 000000610 INF: Cycle	60	Tile	15	Exposure Settings		A	447	G	215	T	215	C	447
17-03-17 22:11:40.008 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36553, sync = True, waitForSettling = True)
17-03-17 22:11:40.008 -07 000000610 INF: Z Motor: Moving to -0.167329 mm, started at -0.174300 mm, distance = 6.97 um
17-03-17 22:11:40.008 -07 000000610 INF: FPGA: Xmit ZDACW 36553\n [Z Motor]
17-03-17 22:11:40.008 -07 000000623 INF: FPGA: Recv ZDACW
17-03-17 22:11:40.018 -07 000000610 INF: FPGA: 'ZDACW 36553' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:11:40.018 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:11:40.018 -07 000000438 INF: FPGA: Recv ZDACR 36553
17-03-17 22:11:40.028 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:40.028 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:11:40.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:40.178 -07 000000561 INF: FPGA: Recv ZSGSRD 35336
17-03-17 22:11:40.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:11:40.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:40.188 -07 000000486 INF: FPGA: Recv ZSGSRD 35339
17-03-17 22:11:40.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:40.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:40.198 -07 000000623 INF: FPGA: Recv ZSGSRD 35334
17-03-17 22:11:40.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:40.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:40.208 -07 000000627 INF: FPGA: Recv ZSGSRD 35338
17-03-17 22:11:40.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:40.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:40.218 -07 000000458 INF: FPGA: Recv ZSGSRD 35340
17-03-17 22:11:40.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:40.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:40.228 -07 000000424 INF: FPGA: Recv ZSGSRD 35339
17-03-17 22:11:40.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:40.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:40.238 -07 000000623 INF: FPGA: Recv ZSGSRD 35334
17-03-17 22:11:40.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:40.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:40.248 -07 000000627 INF: FPGA: Recv ZSGSRD 35335
17-03-17 22:11:40.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:40.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:40.258 -07 000000458 INF: FPGA: Recv ZSGSRD 35335
17-03-17 22:11:40.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:40.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:40.268 -07 000000424 INF: FPGA: Recv ZSGSRD 35342
17-03-17 22:11:40.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:40.278 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:11:40.278 -07 000000012 INF: FPGA: Recv ZPIEZORD 31258
17-03-17 22:11:40.288 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:40.288 -07 000000610 INF: Z Motor: Piezo is near 46.8 V (nominally 0 to 100 V), expect near 55.8 V, since DAC is at 5.578 V. Piezo Error = -9.0 V.
17-03-17 22:11:40.288 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.3 um, Read 10 ADC samples: Avg = 35337 (-166.5 uncal um), Error = 0.9 uncal um, Median = 35337 (-166.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35334 (-166.4 uncal um), Max = 35342 (-166.5 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 22:11:40.288 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35337, posNoise = 5, negNoise = 3
17-03-17 22:11:40.288 -07 000000610 INF: Z Motor: After move to -0.167329, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:11:40.288 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 22:11:40.288 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:11:40.288 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:11:40.288 -07 000000623 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:11:40.288 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:11:40.288 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:11:40.288 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:11:40.288 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:11:40.288 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:11:40.288 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:11:40.288 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:11:40.288 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:11:40.288 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:11:40.298 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 22:11:40.298 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 22:11:40.298 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:11:40.298 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:11:40.308 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 22:11:40.308 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 22:11:40.308 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 22:11:40.308 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 22:11:40.308 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 447 447 215 215 36730 150\n [Camera]
17-03-17 22:11:40.508 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:11:40.958 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 639
17-03-17 22:11:40.958 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 639
17-03-17 22:11:40.958 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:11:40.958 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 639
17-03-17 22:11:40.968 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:11:40.968 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 22:11:40.968 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 639
17-03-17 22:11:40.968 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:11:40.968 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:11:40.968 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 22:11:41.148 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36730 832
17-03-17 22:11:41.298 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning grn on 982
17-03-17 22:11:41.338 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 369 ms.
17-03-17 22:11:41.338 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 370 ms.
17-03-17 22:11:41.338 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:11:41.338 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 378 ms.
17-03-17 22:11:41.338 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-17 22:11:41.338 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:11:41.348 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 22:11:41.348 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:11:41.348 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 22:11:41.358 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 22:11:41.508 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1197
17-03-17 22:11:41.508 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1197
17-03-17 22:11:41.508 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:11:41.518 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1197
17-03-17 22:11:41.518 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:11:41.518 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1197
17-03-17 22:11:41.518 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 22:11:41.518 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:11:41.518 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:11:41.518 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 1479623496, 0x0, 418435064) start.
17-03-17 22:11:41.708 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP 1390
17-03-17 22:11:41.708 -07 000000486 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:11:41.708 -07 000000610 INF: FPGA: 'CAMDBLSNAP 447 447 215 215 36730 150' command took 2 ms to send, 1390 ms to get response, and 1397 ms overall
17-03-17 22:11:41.708 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 22:11:41.708 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.5185546875, Z-Position -0.167335736464542. ------
17-03-17 22:11:41.708 -07 000000551 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:11:41.708 -07 000000012 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.17385 mm
17-03-17 22:11:41.708 -07 000000012 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:11:41.708 -07 000000486 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:11:41.718 -07 000000478 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-17 22:11:41.718 -07 000000478 INF: Y Motor: Moving to 72.3626 mm, started at 71.5186 mm, delta = 0.8441 mm
17-03-17 22:11:41.718 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:11:41.718 -07 000000561 INF: Z Motor: Entering MoveAbsStepped (DAC = 37977, sync = True, waitForSettling = False)
17-03-17 22:11:41.718 -07 000000561 INF: Z Motor: Moving to -0.173848 mm, started at -0.167336 mm, distance = -6.51 um
17-03-17 22:11:41.718 -07 000000551 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 22:11:41.718 -07 000000424 INF: FPGA: Recv YRDPOS 146470
17-03-17 22:11:41.728 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:41.728 -07 000000551 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:11:41.728 -07 000000478 INF: Y Motor: Encoder = 146470 = motor step 114429.7 = 71.5186 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:11:41.728 -07 000000478 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:11:41.728 -07 000000478 INF: Y Motor: Moving 1350 steps-30
17-03-17 22:11:41.738 -07 000000561 INF: FPGA: Xmit ZDACW 37977\n [Z Motor]
17-03-17 22:11:41.738 -07 000000486 INF: FPGA: Recv ZDACW
17-03-17 22:11:41.748 -07 000000478 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:11:41.748 -07 000000561 INF: FPGA: 'ZDACW 37977' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:11:41.768 -07 000000561 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:11:41.768 -07 000000623 INF: FPGA: Recv ZDACR 37977
17-03-17 22:11:41.778 -07 000000561 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:11:41.778 -07 000000561 INF: Z Motor: MoveAbsStepped took 59 ms (did NOT wait for settling yet))
17-03-17 22:11:41.918 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 404 ms.
17-03-17 22:11:41.918 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 22:11:41.918 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:11:41.918 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 1479623496, 0x0, 418435064) end. Duration was 403 ms.
17-03-17 22:11:41.918 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-17 22:11:41.918 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:11:41.928 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:11:41.928 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-17 22:11:41.928 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:11:41.928 -07 000000438 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:11:41.928 -07 000000551 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 211 ms overall
17-03-17 22:11:41.928 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-17 22:11:41.948 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:11:41.948 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 59. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=945, R2=968, Total=1913. Warn if over 250 bubbles per interval.
17-03-17 22:11:42.078 -07 000000561 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 60, FrontChillerTemperature: 4.039839,
17-03-17 22:11:42.118 -07 000000551 INF: FPGA: Recv YMVTILE
17-03-17 22:11:42.118 -07 000000478 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 22:11:42.158 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:11:42.168 -07 000000627 INF: FPGA: Recv YRDPOS 148171
17-03-17 22:11:42.168 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:11:42.168 -07 000000478 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:11:42.168 -07 000000478 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 22:11:42.168 -07 000000478 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.844 mm, average velocity = 2.126 mm/sec
17-03-17 22:11:43.118 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:11:43.118 -07 000000438 INF: FPGA: Recv YRDPOS 148171
17-03-17 22:11:43.128 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:11:43.128 -07 000000478 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:11:43.148 -07 000000478 INF: Y Motor: After move to 72.362610, error = -0.013489, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:11:43.148 -07 000000478 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:11:43.148 -07 000000478 INF: Y Motor: Moved to 72.3491 after 1435 ms (table move)
17-03-17 22:11:43.158 -07 000000012 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173848 mm (DAC = 37977)
17-03-17 22:11:43.158 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:43.158 -07 000000478 INF: FPGA: Recv ZSGSRD 36353
17-03-17 22:11:43.168 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:43.168 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:43.168 -07 000000478 INF: FPGA: Recv ZSGSRD 36354
17-03-17 22:11:43.178 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:43.178 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:43.178 -07 000000438 INF: FPGA: Recv ZSGSRD 36351
17-03-17 22:11:43.188 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:43.188 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:43.188 -07 000000438 INF: FPGA: Recv ZSGSRD 36351
17-03-17 22:11:43.198 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:43.198 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:43.198 -07 000000438 INF: FPGA: Recv ZSGSRD 36354
17-03-17 22:11:43.208 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:43.208 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:43.208 -07 000000438 INF: FPGA: Recv ZSGSRD 36352
17-03-17 22:11:43.218 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:43.218 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:43.218 -07 000000478 INF: FPGA: Recv ZSGSRD 36351
17-03-17 22:11:43.228 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:43.228 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:43.228 -07 000000478 INF: FPGA: Recv ZSGSRD 36349
17-03-17 22:11:43.238 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:43.238 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:43.238 -07 000000618 INF: FPGA: Recv ZSGSRD 36354
17-03-17 22:11:43.248 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:43.248 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:43.248 -07 000000482 INF: FPGA: Recv ZSGSRD 36358
17-03-17 22:11:43.258 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:43.258 -07 000000012 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:11:43.258 -07 000000478 INF: FPGA: Recv ZPIEZORD 32589
17-03-17 22:11:43.268 -07 000000012 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:43.268 -07 000000012 INF: Z Motor: Piezo is near 49.6 V (nominally 0 to 100 V), expect near 57.9 V, since DAC is at 5.795 V. Piezo Error = -8.3 V.
17-03-17 22:11:43.268 -07 000000012 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.8 um, Read 10 ADC samples: Avg = 36353 (-173.0 uncal um), Error = 0.9 uncal um, Median = 36352 (-173.0 uncal um), StdDev = 2 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 36349 (-173.0 uncal um), Max = 36358 (-173.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 22:11:43.268 -07 000000012 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36353, posNoise = 5, negNoise = 4
17-03-17 22:11:43.268 -07 000000012 INF: Z Motor: After move to -0.173848, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:11:43.268 -07 000000012 INF: Z Motor: Settle wait time = 1440 ms, measure time = 110 ms (allowed 150 ms), total time = 1550 ms
17-03-17 22:11:43.268 -07 000000012 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-17 22:11:43.308 -07 000000012 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1594 ms
17-03-17 22:11:43.308 -07 000000012 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:11:43.308 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:11:43.308 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:11:43.308 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:11:43.308 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:11:43.308 -07 000000482 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:11:43.308 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:11:43.308 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 22:11:43.308 -07 000000482 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:11:43.318 -07 000000482 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 22:11:43.318 -07 000000482 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:11:43.328 -07 000000482 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 22:11:43.328 -07 000000482 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 22:11:43.328 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:11:43.378 -07 000000551 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:11:43.568 -07 000000561 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:11:43.568 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:11:43.578 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:11:43.578 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610875264, 0x0, 559484976) start.
17-03-17 22:11:43.608 -07 000000012 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:11:43.618 -07 000000618 INF: FPGA: Recv CAMSNAP
17-03-17 22:11:43.618 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 284 ms overall
17-03-17 22:11:43.688 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610875264, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 22:11:43.688 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:11:43.688 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 22:11:43.688 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 22:11:43.718 -07 000000012 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:11:43.718 -07 000000482 INF: Autofocus start
17-03-17 22:11:43.718 -07 000000482 INF: MeasureProfile start
17-03-17 22:11:43.718 -07 000000627 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:11:43.728 -07 000000012 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:11:43.728 -07 000000012 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:11:43.728 -07 000000482 INF: MeasureProfile done
17-03-17 22:11:43.728 -07 000000482 INF: X=-32  Z correction [um]=-0.2344
17-03-17 22:11:43.728 -07 000000482 INF: Autofocus finished
17-03-17 22:11:43.928 -07 000000627 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:11:43.928 -07 000000012 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:11:43.928 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.34912109375, Z-position -0.173862736000571. ----------
17-03-17 22:11:43.938 -07 000000610 INF: Cycle	60	Tile	16	Exposure Settings		A	447	G	215	T	215	C	447
17-03-17 22:11:43.938 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36438, sync = True, waitForSettling = True)
17-03-17 22:11:43.938 -07 000000610 INF: Z Motor: Moving to -0.166802 mm, started at -0.173863 mm, distance = 7.06 um
17-03-17 22:11:43.938 -07 000000610 INF: FPGA: Xmit ZDACW 36438\n [Z Motor]
17-03-17 22:11:43.938 -07 000000482 INF: FPGA: Recv ZDACW
17-03-17 22:11:43.948 -07 000000610 INF: FPGA: 'ZDACW 36438' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:11:43.948 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:11:43.948 -07 000000486 INF: FPGA: Recv ZDACR 36438
17-03-17 22:11:43.958 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:43.958 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:11:44.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:44.108 -07 000000486 INF: FPGA: Recv ZSGSRD 35255
17-03-17 22:11:44.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:11:44.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:44.118 -07 000000502 INF: FPGA: Recv ZSGSRD 35261
17-03-17 22:11:44.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:44.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:44.128 -07 000000561 INF: FPGA: Recv ZSGSRD 35258
17-03-17 22:11:44.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:44.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:44.138 -07 000000502 INF: FPGA: Recv ZSGSRD 35253
17-03-17 22:11:44.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:44.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:44.148 -07 000000561 INF: FPGA: Recv ZSGSRD 35257
17-03-17 22:11:44.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:44.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:44.158 -07 000000502 INF: FPGA: Recv ZSGSRD 35257
17-03-17 22:11:44.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:44.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:44.168 -07 000000486 INF: FPGA: Recv ZSGSRD 35260
17-03-17 22:11:44.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:44.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:44.178 -07 000000502 INF: FPGA: Recv ZSGSRD 35254
17-03-17 22:11:44.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:44.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:44.188 -07 000000561 INF: FPGA: Recv ZSGSRD 35252
17-03-17 22:11:44.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:44.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:44.198 -07 000000502 INF: FPGA: Recv ZSGSRD 35265
17-03-17 22:11:44.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:44.208 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:11:44.208 -07 000000561 INF: FPGA: Recv ZPIEZORD 31142
17-03-17 22:11:44.218 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:44.218 -07 000000610 INF: Z Motor: Piezo is near 46.5 V (nominally 0 to 100 V), expect near 55.6 V, since DAC is at 5.560 V. Piezo Error = -9.1 V.
17-03-17 22:11:44.218 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.8 um, Read 10 ADC samples: Avg = 35257 (-166.0 uncal um), Error = 0.8 uncal um, Median = 35257 (-166.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35252 (-165.9 uncal um), Max = 35265 (-166.0 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 22:11:44.218 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35257, posNoise = 8, negNoise = 5
17-03-17 22:11:44.218 -07 000000610 INF: Z Motor: After move to -0.166802, error = -0.000019, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:11:44.218 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 22:11:44.218 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:11:44.218 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:11:44.218 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:11:44.218 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:11:44.218 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:11:44.218 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:11:44.218 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:11:44.218 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:11:44.218 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:11:44.218 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:11:44.218 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:11:44.218 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:11:44.228 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 22:11:44.228 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:11:44.228 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:11:44.228 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:11:44.238 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 12 ms.
17-03-17 22:11:44.238 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms.
17-03-17 22:11:44.238 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 11 ms.
17-03-17 22:11:44.238 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 17 ms.
17-03-17 22:11:44.238 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 447 447 215 215 36615 150\n [Camera]
17-03-17 22:11:44.438 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:11:44.888 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 639
17-03-17 22:11:44.888 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 639
17-03-17 22:11:44.888 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 639
17-03-17 22:11:44.888 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 639
17-03-17 22:11:44.888 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:11:44.888 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:11:44.888 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start.
17-03-17 22:11:44.888 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:11:44.888 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:11:44.888 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) start.
17-03-17 22:11:45.078 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36615 832
17-03-17 22:11:45.228 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP turning grn on 982
17-03-17 22:11:45.278 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) end. Duration was 384 ms.
17-03-17 22:11:45.278 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-17 22:11:45.278 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:11:45.278 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 385 ms.
17-03-17 22:11:45.278 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 22:11:45.278 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:11:45.278 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 22:11:45.278 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:11:45.278 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 22:11:45.288 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 22:11:45.448 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1197
17-03-17 22:11:45.448 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1197
17-03-17 22:11:45.448 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:11:45.448 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:11:45.448 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-17 22:11:45.448 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1197
17-03-17 22:11:45.448 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1197
17-03-17 22:11:45.448 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:11:45.448 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:11:45.448 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-17 22:11:45.638 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP 1389
17-03-17 22:11:45.638 -07 000000623 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:11:45.638 -07 000000610 INF: FPGA: 'CAMDBLSNAP 447 447 215 215 36615 150' command took 2 ms to send, 1393 ms to get response, and 1397 ms overall
17-03-17 22:11:45.638 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 22:11:45.638 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.34912109375, Z-Position -0.166821799493201. ------
17-03-17 22:11:45.638 -07 000000012 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:11:45.768 -07 000000551 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.17323 mm
17-03-17 22:11:45.768 -07 000000551 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:11:45.768 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:11:45.768 -07 000000627 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-17 22:11:45.768 -07 000000627 INF: Y Motor: Moving to 73.1926 mm, started at 72.3491 mm, delta = 0.8435 mm
17-03-17 22:11:45.768 -07 000000618 INF: Z Motor: Entering MoveAbsStepped (DAC = 37843, sync = True, waitForSettling = False)
17-03-17 22:11:45.768 -07 000000618 INF: Z Motor: Moving to -0.173234 mm, started at -0.166822 mm, distance = -6.41 um
17-03-17 22:11:45.778 -07 000000012 INF: FPGA: 'FOCMRRCUR 80' command took 122 ms to send, 0 ms to get response, and 131 ms overall
17-03-17 22:11:45.778 -07 000000618 INF: FPGA: Xmit ZDACW 37843\n [Z Motor]
17-03-17 22:11:45.778 -07 000000438 INF: FPGA: Recv ZDACW
17-03-17 22:11:45.788 -07 000000618 INF: FPGA: 'ZDACW 37843' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 22:11:45.788 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:11:45.788 -07 000000502 INF: FPGA: Recv YRDPOS 148171
17-03-17 22:11:45.798 -07 000000012 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:11:45.798 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-17 22:11:45.798 -07 000000627 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:11:45.798 -07 000000627 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:11:45.798 -07 000000627 INF: Y Motor: Moving 1350 steps-28
17-03-17 22:11:45.808 -07 000000618 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:11:45.808 -07 000000502 INF: FPGA: Recv ZDACR 37843
17-03-17 22:11:45.818 -07 000000627 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:11:45.818 -07 000000618 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:11:45.818 -07 000000618 INF: Z Motor: MoveAbsStepped took 45 ms (did NOT wait for settling yet))
17-03-17 22:11:45.848 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 402 ms.
17-03-17 22:11:45.848 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-17 22:11:45.848 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:11:45.858 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 406 ms.
17-03-17 22:11:45.858 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-17 22:11:45.858 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:11:45.858 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:11:45.858 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:11:45.858 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-17 22:11:45.868 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-17 22:11:45.998 -07 000000561 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:11:45.998 -07 000000012 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 22:11:46.188 -07 000000623 INF: FPGA: Recv YMVTILE
17-03-17 22:11:46.188 -07 000000627 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 22:11:46.228 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:11:46.228 -07 000000482 INF: FPGA: Recv YRDPOS 149863
17-03-17 22:11:46.238 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 22:11:46.238 -07 000000627 INF: Y Motor: Encoder = 149863 = motor step 117080.5 = 73.1753 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:11:46.238 -07 000000627 INF: Y Motor: Position error before settling (table move) = -35 encoder counts (-0.017 mm)
17-03-17 22:11:46.238 -07 000000627 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.843 mm, average velocity = 2.125 mm/sec
17-03-17 22:11:46.948 -07 000000482 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:11:46.948 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 59. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=945, R2=968, Total=1913. Warn if over 250 bubbles per interval.
17-03-17 22:11:47.188 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:11:47.188 -07 000000424 INF: FPGA: Recv YRDPOS 149863
17-03-17 22:11:47.198 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:47.198 -07 000000627 INF: Y Motor: Encoder = 149863 = motor step 117080.5 = 73.1753 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:11:47.218 -07 000000627 INF: Y Motor: After move to 73.192604, error = -0.017311, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:11:47.218 -07 000000627 INF: Y Motor: Position error after settling (table move) = -35 encoder counts (-0.017 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:11:47.218 -07 000000627 INF: Y Motor: Moved to 73.1753 after 1449 ms (table move)
17-03-17 22:11:47.218 -07 000000551 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173234 mm (DAC = 37843)
17-03-17 22:11:47.218 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:47.228 -07 000000424 INF: FPGA: Recv ZSGSRD 36264
17-03-17 22:11:47.228 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 22:11:47.228 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:47.228 -07 000000424 INF: FPGA: Recv ZSGSRD 36261
17-03-17 22:11:47.238 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:11:47.238 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:47.238 -07 000000424 INF: FPGA: Recv ZSGSRD 36263
17-03-17 22:11:47.248 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:47.248 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:47.248 -07 000000482 INF: FPGA: Recv ZSGSRD 36267
17-03-17 22:11:47.258 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:47.258 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:47.258 -07 000000502 INF: FPGA: Recv ZSGSRD 36260
17-03-17 22:11:47.268 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:47.268 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:47.268 -07 000000502 INF: FPGA: Recv ZSGSRD 36259
17-03-17 22:11:47.278 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:47.278 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:47.278 -07 000000502 INF: FPGA: Recv ZSGSRD 36256
17-03-17 22:11:47.288 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:47.288 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:47.288 -07 000000502 INF: FPGA: Recv ZSGSRD 36259
17-03-17 22:11:47.298 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:47.298 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:47.298 -07 000000482 INF: FPGA: Recv ZSGSRD 36250
17-03-17 22:11:47.308 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:47.308 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:47.308 -07 000000482 INF: FPGA: Recv ZSGSRD 36258
17-03-17 22:11:47.318 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:47.318 -07 000000551 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:11:47.318 -07 000000482 INF: FPGA: Recv ZPIEZORD 32499
17-03-17 22:11:47.328 -07 000000551 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:47.328 -07 000000551 INF: Z Motor: Piezo is near 49.4 V (nominally 0 to 100 V), expect near 57.7 V, since DAC is at 5.774 V. Piezo Error = -8.3 V.
17-03-17 22:11:47.328 -07 000000551 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.2 um, Read 10 ADC samples: Avg = 36260 (-172.4 uncal um), Error = 0.9 uncal um, Median = 36260 (-172.4 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 36250 (-172.3 uncal um), Max = 36267 (-172.4 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-17 22:11:47.328 -07 000000551 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36260, posNoise = 7, negNoise = 10
17-03-17 22:11:47.328 -07 000000551 INF: Z Motor: After move to -0.173234, error = -0.000031, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:11:47.328 -07 000000551 INF: Z Motor: Settle wait time = 1453 ms, measure time = 102 ms (allowed 150 ms), total time = 1555 ms
17-03-17 22:11:47.328 -07 000000551 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 22:11:47.378 -07 000000551 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1608 ms
17-03-17 22:11:47.378 -07 000000551 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:11:47.378 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:11:47.378 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:11:47.378 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:11:47.378 -07 000000478 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:11:47.378 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:11:47.378 -07 000000486 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:11:47.378 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 22:11:47.378 -07 000000478 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:11:47.388 -07 000000478 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 22:11:47.388 -07 000000478 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:11:47.398 -07 000000478 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 22:11:47.398 -07 000000478 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 22:11:47.398 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:11:47.438 -07 000000478 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 60, FrontChillerTemperature: 4.005817,
17-03-17 22:11:47.448 -07 000000502 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:11:47.648 -07 000000478 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:11:47.648 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:11:47.648 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:11:47.648 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 22:11:47.688 -07 000000482 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:11:47.688 -07 000000478 INF: FPGA: Recv CAMSNAP
17-03-17 22:11:47.688 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 284 ms overall
17-03-17 22:11:47.768 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 22:11:47.768 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:11:47.768 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:11:47.768 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-17 22:11:47.788 -07 000000551 INF: Autofocus start
17-03-17 22:11:47.788 -07 000000551 INF: MeasureProfile start
17-03-17 22:11:47.788 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:11:47.788 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:11:47.798 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:11:47.798 -07 000000424 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:11:47.798 -07 000000551 INF: MeasureProfile done
17-03-17 22:11:47.798 -07 000000551 INF: X=32  Z correction [um]=0.09220707
17-03-17 22:11:47.798 -07 000000551 INF: Autofocus finished
17-03-17 22:11:47.998 -07 000000478 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:11:47.998 -07 000000424 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 203 ms overall
17-03-17 22:11:47.998 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.17529296875, Z-position -0.173265284271387. ----------
17-03-17 22:11:47.998 -07 000000610 INF: Cycle	60	Tile	17	Exposure Settings		A	447	G	215	T	215	C	447
17-03-17 22:11:48.008 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36376, sync = True, waitForSettling = True)
17-03-17 22:11:48.008 -07 000000610 INF: Z Motor: Moving to -0.166519 mm, started at -0.173265 mm, distance = 6.75 um
17-03-17 22:11:48.008 -07 000000610 INF: FPGA: Xmit ZDACW 36376\n [Z Motor]
17-03-17 22:11:48.008 -07 000000627 INF: FPGA: Recv ZDACW
17-03-17 22:11:48.018 -07 000000610 INF: FPGA: 'ZDACW 36376' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:11:48.018 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:11:48.018 -07 000000627 INF: FPGA: Recv ZDACR 36376
17-03-17 22:11:48.028 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:48.028 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:11:48.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:48.178 -07 000000627 INF: FPGA: Recv ZSGSRD 35213
17-03-17 22:11:48.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:11:48.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:48.188 -07 000000627 INF: FPGA: Recv ZSGSRD 35212
17-03-17 22:11:48.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:48.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:48.198 -07 000000478 INF: FPGA: Recv ZSGSRD 35210
17-03-17 22:11:48.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:48.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:48.208 -07 000000551 INF: FPGA: Recv ZSGSRD 35214
17-03-17 22:11:48.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:48.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:48.218 -07 000000551 INF: FPGA: Recv ZSGSRD 35211
17-03-17 22:11:48.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:48.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:48.228 -07 000000551 INF: FPGA: Recv ZSGSRD 35214
17-03-17 22:11:48.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:48.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:48.238 -07 000000502 INF: FPGA: Recv ZSGSRD 35213
17-03-17 22:11:48.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:48.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:48.248 -07 000000478 INF: FPGA: Recv ZSGSRD 35208
17-03-17 22:11:48.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:48.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:48.258 -07 000000478 INF: FPGA: Recv ZSGSRD 35213
17-03-17 22:11:48.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:48.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:48.268 -07 000000438 INF: FPGA: Recv ZSGSRD 35211
17-03-17 22:11:48.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:48.278 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:11:48.278 -07 000000438 INF: FPGA: Recv ZPIEZORD 31113
17-03-17 22:11:48.288 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:48.288 -07 000000610 INF: Z Motor: Piezo is near 46.5 V (nominally 0 to 100 V), expect near 55.5 V, since DAC is at 5.551 V. Piezo Error = -9.0 V.
17-03-17 22:11:48.288 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.5 um, Read 10 ADC samples: Avg = 35212 (-165.7 uncal um), Error = 0.9 uncal um, Median = 35212 (-165.7 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 35208 (-165.6 uncal um), Max = 35214 (-165.7 uncal um), Pos Noise = 2 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 22:11:48.288 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35212, posNoise = 2, negNoise = 4
17-03-17 22:11:48.288 -07 000000610 INF: Z Motor: After move to -0.166519, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:11:48.288 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 22:11:48.288 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:11:48.288 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:11:48.288 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:11:48.288 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:11:48.288 -07 000000551 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:11:48.288 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:11:48.288 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:11:48.288 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:11:48.288 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 22:11:48.288 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:11:48.288 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:11:48.288 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:11:48.298 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:11:48.298 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:11:48.298 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:11:48.298 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:11:48.308 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 22:11:48.308 -07 000000551 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 22:11:48.308 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 22:11:48.308 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 22:11:48.308 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 447 447 215 215 36552 150\n [Camera]
17-03-17 22:11:48.508 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:11:48.958 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 639
17-03-17 22:11:48.958 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 639
17-03-17 22:11:48.958 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:11:48.958 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:11:48.958 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 22:11:48.958 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 639
17-03-17 22:11:48.958 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 639
17-03-17 22:11:48.958 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:11:48.958 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:11:48.958 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 1479623496, 0x0, 418435064) start.
17-03-17 22:11:49.148 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36552 832
17-03-17 22:11:49.298 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning grn on 982
17-03-17 22:11:49.338 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 1479623496, 0x0, 418435064) end. Duration was 376 ms.
17-03-17 22:11:49.338 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 22:11:49.338 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:11:49.338 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 378 ms.
17-03-17 22:11:49.338 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 22:11:49.338 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:11:49.338 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:11:49.338 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:11:49.338 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 22:11:49.348 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 22:11:49.518 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1197
17-03-17 22:11:49.518 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1197
17-03-17 22:11:49.518 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:11:49.518 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1197
17-03-17 22:11:49.518 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:11:49.518 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1197
17-03-17 22:11:49.518 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) start.
17-03-17 22:11:49.518 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:11:49.518 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:11:49.518 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-17 22:11:49.708 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP 1390
17-03-17 22:11:49.708 -07 000000561 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:11:49.708 -07 000000610 INF: FPGA: 'CAMDBLSNAP 447 447 215 215 36552 150' command took 2 ms to send, 1391 ms to get response, and 1397 ms overall
17-03-17 22:11:49.708 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 22:11:49.708 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.17529296875, Z-Position -0.166532709946822. ------
17-03-17 22:11:49.818 -07 000000478 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:11:49.818 -07 000000551 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.17290 mm
17-03-17 22:11:49.818 -07 000000551 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:11:49.818 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:11:49.818 -07 000000561 INF: Z Motor: Entering MoveAbsStepped (DAC = 37769, sync = True, waitForSettling = False)
17-03-17 22:11:49.818 -07 000000561 INF: Z Motor: Moving to -0.172895 mm, started at -0.166533 mm, distance = -6.36 um
17-03-17 22:11:49.828 -07 000000478 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:11:49.828 -07 000000561 INF: FPGA: Xmit ZDACW 37769\n [Z Motor]
17-03-17 22:11:49.828 -07 000000424 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-17 22:11:49.828 -07 000000424 INF: Y Motor: Moving to 74.0226 mm, started at 73.1753 mm, delta = 0.8473 mm
17-03-17 22:11:49.828 -07 000000438 INF: FPGA: Recv ZDACW
17-03-17 22:11:49.838 -07 000000561 INF: FPGA: 'ZDACW 37769' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:11:49.838 -07 000000478 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:11:49.848 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:11:49.848 -07 000000438 INF: FPGA: Recv YRDPOS 149864
17-03-17 22:11:49.858 -07 000000561 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:11:49.858 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:11:49.858 -07 000000424 INF: Y Motor: Encoder = 149864 = motor step 117081.3 = 73.1758 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:11:49.858 -07 000000012 INF: FPGA: Recv ZDACR 37769
17-03-17 22:11:49.858 -07 000000424 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:11:49.858 -07 000000424 INF: Y Motor: Moving 1355 steps-35
17-03-17 22:11:49.868 -07 000000561 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:11:49.868 -07 000000561 INF: Z Motor: MoveAbsStepped took 40 ms (did NOT wait for settling yet))
17-03-17 22:11:49.868 -07 000000424 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:11:49.918 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 396 ms.
17-03-17 22:11:49.918 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 22:11:49.918 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:11:49.918 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) end. Duration was 398 ms.
17-03-17 22:11:49.918 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 22:11:49.918 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:11:49.918 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:11:49.918 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:11:49.918 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 22:11:49.928 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-17 22:11:50.038 -07 000000438 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:11:50.038 -07 000000478 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 214 ms overall
17-03-17 22:11:50.238 -07 000000012 INF: FPGA: Recv YMVTILE
17-03-17 22:11:50.238 -07 000000424 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 385 ms overall
17-03-17 22:11:50.278 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:11:50.278 -07 000000012 INF: FPGA: Recv YRDPOS 151567
17-03-17 22:11:50.288 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:50.288 -07 000000424 INF: Y Motor: Encoder = 151567 = motor step 118411.7 = 74.0073 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:11:50.288 -07 000000424 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-17 22:11:50.288 -07 000000424 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 385 ms, distance = 0.847 mm, average velocity = 2.201 mm/sec
17-03-17 22:11:51.238 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:11:51.238 -07 000000478 INF: FPGA: Recv YRDPOS 151567
17-03-17 22:11:51.248 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:51.248 -07 000000424 INF: Y Motor: Encoder = 151567 = motor step 118411.7 = 74.0073 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:11:51.258 -07 000000424 INF: Y Motor: After move to 74.022606, error = -0.015282, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:11:51.258 -07 000000424 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:11:51.258 -07 000000424 INF: Y Motor: Moved to 74.0073 after 1437 ms (table move)
17-03-17 22:11:51.268 -07 000000551 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172895 mm (DAC = 37769)
17-03-17 22:11:51.268 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:51.268 -07 000000459 INF: FPGA: Recv ZSGSRD 36207
17-03-17 22:11:51.278 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:11:51.278 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:51.278 -07 000000459 INF: FPGA: Recv ZSGSRD 36209
17-03-17 22:11:51.288 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:51.288 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:51.288 -07 000000459 INF: FPGA: Recv ZSGSRD 36205
17-03-17 22:11:51.298 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:51.298 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:51.298 -07 000000459 INF: FPGA: Recv ZSGSRD 36200
17-03-17 22:11:51.308 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:51.308 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:51.308 -07 000000459 INF: FPGA: Recv ZSGSRD 36206
17-03-17 22:11:51.318 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:51.318 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:51.318 -07 000000459 INF: FPGA: Recv ZSGSRD 36198
17-03-17 22:11:51.328 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:51.328 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:51.328 -07 000000486 INF: FPGA: Recv ZSGSRD 36200
17-03-17 22:11:51.338 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:51.338 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:51.338 -07 000000486 INF: FPGA: Recv ZSGSRD 36203
17-03-17 22:11:51.348 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:51.348 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:51.348 -07 000000486 INF: FPGA: Recv ZSGSRD 36206
17-03-17 22:11:51.358 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:51.358 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:51.358 -07 000000424 INF: FPGA: Recv ZSGSRD 36210
17-03-17 22:11:51.368 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:51.368 -07 000000551 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:11:51.368 -07 000000627 INF: FPGA: Recv ZPIEZORD 32506
17-03-17 22:11:51.378 -07 000000551 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:51.378 -07 000000551 INF: Z Motor: Piezo is near 49.4 V (nominally 0 to 100 V), expect near 57.6 V, since DAC is at 5.763 V. Piezo Error = -8.2 V.
17-03-17 22:11:51.378 -07 000000551 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.9 um, Read 10 ADC samples: Avg = 36204 (-172.0 uncal um), Error = 0.9 uncal um, Median = 36206 (-172.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36198 (-172.0 uncal um), Max = 36210 (-172.1 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 22:11:51.378 -07 000000551 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36204, posNoise = 6, negNoise = 6
17-03-17 22:11:51.378 -07 000000551 INF: Z Motor: After move to -0.172895, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:11:51.378 -07 000000551 INF: Z Motor: Settle wait time = 1443 ms, measure time = 108 ms (allowed 150 ms), total time = 1551 ms
17-03-17 22:11:51.378 -07 000000551 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-17 22:11:51.428 -07 000000551 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1603 ms
17-03-17 22:11:51.428 -07 000000551 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:11:51.428 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:11:51.428 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:11:51.438 -07 000000623 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:11:51.438 -07 000000478 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:11:51.438 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:11:51.438 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:11:51.448 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 22:11:51.448 -07 000000623 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:11:51.448 -07 000000623 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-17 22:11:51.448 -07 000000623 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:11:51.458 -07 000000623 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 22:11:51.458 -07 000000623 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 22:11:51.458 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:11:51.508 -07 000000486 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:11:51.708 -07 000000623 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:11:51.708 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:11:51.708 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:11:51.708 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 22:11:51.748 -07 000000551 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:11:51.748 -07 000000482 INF: FPGA: Recv CAMSNAP
17-03-17 22:11:51.748 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 273 ms to get response, and 284 ms overall
17-03-17 22:11:51.828 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 22:11:51.828 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:11:51.828 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:11:51.828 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 120 ms.
17-03-17 22:11:51.848 -07 000000627 INF: Autofocus start
17-03-17 22:11:51.848 -07 000000627 INF: MeasureProfile start
17-03-17 22:11:51.848 -07 000000551 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:11:51.848 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:11:51.858 -07 000000551 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:11:51.858 -07 000000551 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:11:51.858 -07 000000627 INF: MeasureProfile done
17-03-17 22:11:51.858 -07 000000627 INF: X=16  Z correction [um]=0.01042744
17-03-17 22:11:51.858 -07 000000627 INF: Autofocus finished
17-03-17 22:11:51.948 -07 000000459 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:11:51.948 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 59. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=945, R2=968, Total=1913. Warn if over 250 bubbles per interval.
17-03-17 22:11:52.058 -07 000000486 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:11:52.058 -07 000000551 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:11:52.068 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.00732421875, Z-position -0.172905528391449. ----------
17-03-17 22:11:52.068 -07 000000610 INF: Cycle	60	Tile	18	Exposure Settings		A	447	G	215	T	215	C	447
17-03-17 22:11:52.068 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36284, sync = True, waitForSettling = True)
17-03-17 22:11:52.068 -07 000000610 INF: Z Motor: Moving to -0.166098 mm, started at -0.172906 mm, distance = 6.81 um
17-03-17 22:11:52.068 -07 000000610 INF: FPGA: Xmit ZDACW 36284\n [Z Motor]
17-03-17 22:11:52.068 -07 000000438 INF: FPGA: Recv ZDACW
17-03-17 22:11:52.078 -07 000000610 INF: FPGA: 'ZDACW 36284' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:11:52.078 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:11:52.078 -07 000000424 INF: FPGA: Recv ZDACR 36284
17-03-17 22:11:52.088 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:52.088 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:11:52.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:52.238 -07 000000424 INF: FPGA: Recv ZSGSRD 35144
17-03-17 22:11:52.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:52.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:52.248 -07 000000623 INF: FPGA: Recv ZSGSRD 35151
17-03-17 22:11:52.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:52.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:52.258 -07 000000424 INF: FPGA: Recv ZSGSRD 35146
17-03-17 22:11:52.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:52.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:52.268 -07 000000623 INF: FPGA: Recv ZSGSRD 35144
17-03-17 22:11:52.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:52.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:52.278 -07 000000424 INF: FPGA: Recv ZSGSRD 35143
17-03-17 22:11:52.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:52.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:52.288 -07 000000623 INF: FPGA: Recv ZSGSRD 35149
17-03-17 22:11:52.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:52.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:52.298 -07 000000424 INF: FPGA: Recv ZSGSRD 35147
17-03-17 22:11:52.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:52.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:52.308 -07 000000551 INF: FPGA: Recv ZSGSRD 35149
17-03-17 22:11:52.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:52.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:52.318 -07 000000424 INF: FPGA: Recv ZSGSRD 35143
17-03-17 22:11:52.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:52.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:52.328 -07 000000623 INF: FPGA: Recv ZSGSRD 35148
17-03-17 22:11:52.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:52.338 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:11:52.338 -07 000000424 INF: FPGA: Recv ZPIEZORD 31049
17-03-17 22:11:52.348 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:52.348 -07 000000610 INF: Z Motor: Piezo is near 46.3 V (nominally 0 to 100 V), expect near 55.4 V, since DAC is at 5.537 V. Piezo Error = -9.0 V.
17-03-17 22:11:52.348 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.1 um, Read 10 ADC samples: Avg = 35146 (-165.2 uncal um), Error = 0.9 uncal um, Median = 35146 (-165.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35143 (-165.2 uncal um), Max = 35151 (-165.3 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 22:11:52.348 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35146, posNoise = 5, negNoise = 3
17-03-17 22:11:52.348 -07 000000610 INF: Z Motor: After move to -0.166098, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:11:52.348 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 22:11:52.348 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:11:52.348 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:11:52.348 -07 000000486 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:11:52.348 -07 000000623 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:11:52.348 -07 000000551 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:11:52.348 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:11:52.348 -07 000000459 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:11:52.348 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:11:52.348 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:11:52.348 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:11:52.348 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:11:52.348 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:11:52.358 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:11:52.358 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:11:52.358 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:11:52.358 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:11:52.368 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 22:11:52.368 -07 000000459 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 22:11:52.368 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 11 ms.
17-03-17 22:11:52.368 -07 000000551 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 17 ms.
17-03-17 22:11:52.368 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 447 447 215 215 36461 150\n [Camera]
17-03-17 22:11:52.568 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:11:52.798 -07 000000478 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 60, FrontChillerTemperature: 3.988112,
17-03-17 22:11:53.018 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 639
17-03-17 22:11:53.018 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 639
17-03-17 22:11:53.018 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:11:53.018 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 639
17-03-17 22:11:53.018 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 639
17-03-17 22:11:53.018 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:11:53.028 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:11:53.028 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-17 22:11:53.028 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:11:53.028 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-17 22:11:53.208 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36461 832
17-03-17 22:11:53.358 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP turning grn on 982
17-03-17 22:11:53.408 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 22:11:53.408 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 22:11:53.408 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:11:53.408 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 22:11:53.408 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 22:11:53.408 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:11:53.408 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:11:53.408 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:11:53.408 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 22:11:53.418 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 22:11:53.578 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1197
17-03-17 22:11:53.578 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1197
17-03-17 22:11:53.578 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:11:53.578 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1197
17-03-17 22:11:53.578 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:11:53.578 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 22:11:53.578 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1197
17-03-17 22:11:53.578 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:11:53.578 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:11:53.578 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1479623496, 0x0, 418435064) start.
17-03-17 22:11:53.768 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP 1391
17-03-17 22:11:53.768 -07 000000482 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:11:53.768 -07 000000610 INF: FPGA: 'CAMDBLSNAP 447 447 215 215 36461 150' command took 2 ms to send, 1393 ms to get response, and 1398 ms overall
17-03-17 22:11:53.768 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 22:11:53.768 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.00732421875, Z-Position -0.166108711945466. ------
17-03-17 22:11:53.778 -07 000000627 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:11:53.778 -07 000000482 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.17258 mm
17-03-17 22:11:53.778 -07 000000482 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:11:53.778 -07 000000459 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:11:53.778 -07 000000012 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-17 22:11:53.778 -07 000000012 INF: Y Motor: Moving to 74.8526 mm, started at 74.0073 mm, delta = 0.8453 mm
17-03-17 22:11:53.778 -07 000000502 INF: Z Motor: Entering MoveAbsStepped (DAC = 37700, sync = True, waitForSettling = False)
17-03-17 22:11:53.778 -07 000000502 INF: Z Motor: Moving to -0.172580 mm, started at -0.166109 mm, distance = -6.47 um
17-03-17 22:11:53.788 -07 000000627 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:53.788 -07 000000502 INF: FPGA: Xmit ZDACW 37700\n [Z Motor]
17-03-17 22:11:53.788 -07 000000478 INF: FPGA: Recv ZDACW
17-03-17 22:11:53.798 -07 000000502 INF: FPGA: 'ZDACW 37700' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 22:11:53.798 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:11:53.798 -07 000000459 INF: FPGA: Recv YRDPOS 151568
17-03-17 22:11:53.808 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 22:11:53.808 -07 000000012 INF: Y Motor: Encoder = 151568 = motor step 118412.5 = 74.0078 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:11:53.808 -07 000000627 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:11:53.808 -07 000000012 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:11:53.808 -07 000000012 INF: Y Motor: Moving 1352 steps-31
17-03-17 22:11:53.818 -07 000000502 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:11:53.818 -07 000000459 INF: FPGA: Recv ZDACR 37700
17-03-17 22:11:53.828 -07 000000012 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:11:53.828 -07 000000502 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:11:53.828 -07 000000502 INF: Z Motor: MoveAbsStepped took 46 ms (did NOT wait for settling yet))
17-03-17 22:11:53.978 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 403 ms.
17-03-17 22:11:53.978 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 22:11:53.978 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:11:53.978 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1479623496, 0x0, 418435064) end. Duration was 402 ms.
17-03-17 22:11:53.978 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-17 22:11:53.978 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:11:53.988 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:11:53.988 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-17 22:11:53.988 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 22:11:53.998 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 417 ms.
17-03-17 22:11:54.008 -07 000000478 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:11:54.008 -07 000000627 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-17 22:11:54.198 -07 000000561 INF: FPGA: Recv YMVTILE
17-03-17 22:11:54.198 -07 000000012 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-17 22:11:54.228 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:11:54.228 -07 000000424 INF: FPGA: Recv YRDPOS 153255
17-03-17 22:11:54.238 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:11:54.238 -07 000000012 INF: Y Motor: Encoder = 153255 = motor step 119730.5 = 74.8315 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:11:54.238 -07 000000012 INF: Y Motor: Position error before settling (table move) = -43 encoder counts (-0.021 mm)
17-03-17 22:11:54.238 -07 000000012 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.845 mm, average velocity = 2.140 mm/sec
17-03-17 22:11:55.188 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:11:55.188 -07 000000478 INF: FPGA: Recv YRDPOS 153255
17-03-17 22:11:55.198 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:55.198 -07 000000012 INF: Y Motor: Encoder = 153255 = motor step 119730.5 = 74.8315 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:11:55.208 -07 000000012 INF: Y Motor: After move to 74.852608, error = -0.021065, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:11:55.208 -07 000000012 INF: Y Motor: Position error after settling (table move) = -43 encoder counts (-0.021 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:11:55.208 -07 000000012 INF: Y Motor: Moved to 74.8315 after 1433 ms (table move)
17-03-17 22:11:55.218 -07 000000482 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172580 mm (DAC = 37700)
17-03-17 22:11:55.218 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:55.218 -07 000000561 INF: FPGA: Recv ZSGSRD 36157
17-03-17 22:11:55.228 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:55.228 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:55.228 -07 000000478 INF: FPGA: Recv ZSGSRD 36153
17-03-17 22:11:55.238 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:55.238 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:55.238 -07 000000502 INF: FPGA: Recv ZSGSRD 36154
17-03-17 22:11:55.248 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:55.248 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:55.248 -07 000000627 INF: FPGA: Recv ZSGSRD 36159
17-03-17 22:11:55.258 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:55.258 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:55.258 -07 000000459 INF: FPGA: Recv ZSGSRD 36153
17-03-17 22:11:55.268 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:55.268 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:55.268 -07 000000012 INF: FPGA: Recv ZSGSRD 36159
17-03-17 22:11:55.278 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:55.278 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:55.278 -07 000000438 INF: FPGA: Recv ZSGSRD 36160
17-03-17 22:11:55.288 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:55.288 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:55.288 -07 000000627 INF: FPGA: Recv ZSGSRD 36154
17-03-17 22:11:55.298 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:55.298 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:55.298 -07 000000551 INF: FPGA: Recv ZSGSRD 36150
17-03-17 22:11:55.308 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:55.308 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:55.308 -07 000000627 INF: FPGA: Recv ZSGSRD 36149
17-03-17 22:11:55.318 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:55.318 -07 000000482 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:11:55.318 -07 000000438 INF: FPGA: Recv ZPIEZORD 32399
17-03-17 22:11:55.328 -07 000000482 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:55.328 -07 000000482 INF: Z Motor: Piezo is near 49.2 V (nominally 0 to 100 V), expect near 57.5 V, since DAC is at 5.753 V. Piezo Error = -8.3 V.
17-03-17 22:11:55.328 -07 000000482 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.6 um, Read 10 ADC samples: Avg = 36155 (-171.7 uncal um), Error = 0.9 uncal um, Median = 36154 (-171.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36149 (-171.7 uncal um), Max = 36160 (-171.7 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 22:11:55.328 -07 000000482 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36155, posNoise = 5, negNoise = 6
17-03-17 22:11:55.328 -07 000000482 INF: Z Motor: After move to -0.172580, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:11:55.328 -07 000000482 INF: Z Motor: Settle wait time = 1436 ms, measure time = 112 ms (allowed 150 ms), total time = 1548 ms
17-03-17 22:11:55.328 -07 000000482 INF: Z Motor: Waiting extra 38 ms after reading position to reach expected total of 150 ms
17-03-17 22:11:55.368 -07 000000482 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1589 ms
17-03-17 22:11:55.368 -07 000000482 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:11:55.368 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:11:55.368 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:11:55.368 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:11:55.368 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:11:55.368 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:11:55.368 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:11:55.368 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:11:55.368 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:11:55.368 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:11:55.368 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:11:55.388 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 22:11:55.388 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 22:11:55.388 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:11:55.438 -07 000000502 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:11:55.628 -07 000000438 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:11:55.638 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:11:55.638 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:11:55.638 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610875264, 0x0, 559484976) start.
17-03-17 22:11:55.668 -07 000000478 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:11:55.678 -07 000000438 INF: FPGA: Recv CAMSNAP
17-03-17 22:11:55.678 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 284 ms overall
17-03-17 22:11:55.748 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610875264, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 22:11:55.748 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:11:55.748 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:11:55.748 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 22:11:55.778 -07 000000502 INF: Autofocus start
17-03-17 22:11:55.778 -07 000000012 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:11:55.778 -07 000000502 INF: MeasureProfile start
17-03-17 22:11:55.778 -07 000000459 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:11:55.788 -07 000000012 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:11:55.788 -07 000000012 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:11:55.788 -07 000000502 INF: MeasureProfile done
17-03-17 22:11:55.788 -07 000000502 INF: X=0  Z correction [um]=-0.0713522
17-03-17 22:11:55.788 -07 000000502 INF: Autofocus finished
17-03-17 22:11:55.988 -07 000000438 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:11:55.988 -07 000000012 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:11:55.988 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83154296875, Z-position -0.172590741996502. ----------
17-03-17 22:11:55.998 -07 000000610 INF: Cycle	60	Tile	19	Exposure Settings		A	447	G	215	T	215	C	447
17-03-17 22:11:55.998 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36197, sync = True, waitForSettling = True)
17-03-17 22:11:55.998 -07 000000610 INF: Z Motor: Moving to -0.165699 mm, started at -0.172591 mm, distance = 6.89 um
17-03-17 22:11:55.998 -07 000000610 INF: FPGA: Xmit ZDACW 36197\n [Z Motor]
17-03-17 22:11:55.998 -07 000000627 INF: FPGA: Recv ZDACW
17-03-17 22:11:56.008 -07 000000610 INF: FPGA: 'ZDACW 36197' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:11:56.008 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:11:56.008 -07 000000627 INF: FPGA: Recv ZDACR 36197
17-03-17 22:11:56.018 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:56.018 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:11:56.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:56.168 -07 000000012 INF: FPGA: Recv ZSGSRD 35092
17-03-17 22:11:56.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:11:56.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:56.178 -07 000000424 INF: FPGA: Recv ZSGSRD 35082
17-03-17 22:11:56.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:56.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:56.188 -07 000000012 INF: FPGA: Recv ZSGSRD 35080
17-03-17 22:11:56.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:56.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:56.198 -07 000000012 INF: FPGA: Recv ZSGSRD 35087
17-03-17 22:11:56.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:56.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:56.208 -07 000000012 INF: FPGA: Recv ZSGSRD 35085
17-03-17 22:11:56.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:56.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:56.218 -07 000000012 INF: FPGA: Recv ZSGSRD 35091
17-03-17 22:11:56.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:56.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:56.228 -07 000000012 INF: FPGA: Recv ZSGSRD 35084
17-03-17 22:11:56.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:56.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:56.238 -07 000000627 INF: FPGA: Recv ZSGSRD 35079
17-03-17 22:11:56.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:56.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:56.248 -07 000000012 INF: FPGA: Recv ZSGSRD 35090
17-03-17 22:11:56.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:56.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:11:56.258 -07 000000627 INF: FPGA: Recv ZSGSRD 35082
17-03-17 22:11:56.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:56.268 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:11:56.268 -07 000000627 INF: FPGA: Recv ZPIEZORD 30992
17-03-17 22:11:56.278 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:11:56.278 -07 000000610 INF: Z Motor: Piezo is near 46.2 V (nominally 0 to 100 V), expect near 55.2 V, since DAC is at 5.523 V. Piezo Error = -9.0 V.
17-03-17 22:11:56.278 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -165.7 um, Read 10 ADC samples: Avg = 35085 (-164.9 uncal um), Error = 0.8 uncal um, Median = 35084 (-164.8 uncal um), StdDev = 5 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35079 (-164.8 uncal um), Max = 35092 (-164.9 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 22:11:56.278 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35085, posNoise = 7, negNoise = 6
17-03-17 22:11:56.278 -07 000000610 INF: Z Motor: After move to -0.165699, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:11:56.278 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 22:11:56.278 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:11:56.278 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:11:56.278 -07 000000459 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:11:56.278 -07 000000478 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:11:56.278 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:11:56.278 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:11:56.278 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:11:56.278 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:11:56.278 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 22:11:56.278 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:11:56.278 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:11:56.278 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:11:56.278 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 22:11:56.278 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:11:56.288 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 22:11:56.288 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:11:56.288 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 22:11:56.288 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 12 ms.
17-03-17 22:11:56.298 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 22:11:56.298 -07 000000478 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 22:11:56.298 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 447 447 215 215 36374 150\n [Camera]
17-03-17 22:11:56.498 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:11:56.948 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 639
17-03-17 22:11:56.948 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 639
17-03-17 22:11:56.948 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:11:56.948 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:11:56.948 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start.
17-03-17 22:11:56.948 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 639
17-03-17 22:11:56.948 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 639
17-03-17 22:11:56.948 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:11:56.948 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:11:56.948 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) start.
17-03-17 22:11:56.948 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:11:56.948 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 59. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=945, R2=968, Total=1913. Warn if over 250 bubbles per interval.
17-03-17 22:11:57.138 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36374 832
17-03-17 22:11:57.288 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP turning grn on 983
17-03-17 22:11:57.318 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 22:11:57.318 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-17 22:11:57.318 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:11:57.328 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 22:11:57.328 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 22:11:57.328 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:11:57.328 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:11:57.328 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 22:11:57.328 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:11:57.338 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 22:11:57.498 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1197
17-03-17 22:11:57.498 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1197
17-03-17 22:11:57.508 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:11:57.508 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1197
17-03-17 22:11:57.508 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1197
17-03-17 22:11:57.508 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:11:57.508 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:11:57.508 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 22:11:57.508 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:11:57.508 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 22:11:57.698 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP 1390
17-03-17 22:11:57.698 -07 000000482 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:11:57.698 -07 000000610 INF: FPGA: 'CAMDBLSNAP 447 447 215 215 36374 150' command took 2 ms to send, 1391 ms to get response, and 1397 ms overall
17-03-17 22:11:57.908 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 397 ms.
17-03-17 22:11:57.908 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 22:11:57.908 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:11:57.908 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 398 ms.
17-03-17 22:11:57.908 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 22:11:57.908 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:11:57.908 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:11:57.908 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 22:11:57.908 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-17 22:11:57.908 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:11:57.918 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-17 22:11:57.948 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 42 ms.
17-03-17 22:11:57.948 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-17 22:11:57.998 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 42 ms.
17-03-17 22:11:57.998 -07 000000610 INF: Move compensator for Bottom-surface imaging.
17-03-17 22:11:57.998 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-17 22:11:57.998 -07 000000502 INF: FPGA: Recv EMCUR 
17-03-17 22:11:58.008 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:11:58.008 -07 000000610 INF: FPGA: Xmit EMIN 20 40\n [Compensator]
17-03-17 22:11:58.158 -07 000000438 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 60, FrontChillerTemperature: 3.981281,
17-03-17 22:11:58.508 -07 000000448 INF: FPGA: Recv EMIN
17-03-17 22:11:58.508 -07 000000610 INF: FPGA: 'EMIN 20 40' command took 0 ms to send, 492 ms to get response, and 502 ms overall
17-03-17 22:11:58.508 -07 000000610 INF: FPGA: Xmit EMCUR 60\n [Compensator]
17-03-17 22:11:58.508 -07 000000482 INF: FPGA: Recv EMCUR 
17-03-17 22:11:58.518 -07 000000610 INF: FPGA: 'EMCUR 60' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:11:58.638 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 22:11:58.638 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 74.83154296875, Z-Position -0.165716835004818. ------
17-03-17 22:11:58.638 -07 000000618 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.14040 mm
17-03-17 22:11:58.638 -07 000000618 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:11:58.638 -07 000000438 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:11:58.638 -07 000000012 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-17 22:11:58.638 -07 000000012 INF: Y Motor: Moving to 59.9126 mm, started at 74.8315 mm, delta = -14.9189 mm
17-03-17 22:11:58.638 -07 000000424 INF: Z Motor: Entering MoveAbsStepped (DAC = 30670, sync = True, waitForSettling = False)
17-03-17 22:11:58.648 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:11:58.648 -07 000000424 INF: Z Motor: Moving to -0.140398 mm, started at -0.165717 mm, distance = 25.32 um
17-03-17 22:11:58.648 -07 000000482 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:11:58.648 -07 000000438 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 22:11:58.648 -07 000000478 INF: FPGA: Recv YRDPOS 153256
17-03-17 22:11:58.658 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:11:58.658 -07 000000012 INF: Y Motor: Encoder = 153256 = motor step 119731.3 = 74.8320 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:11:58.658 -07 000000424 INF: FPGA: Xmit ZDACW 30670\n [Z Motor]
17-03-17 22:11:58.658 -07 000000448 INF: FPGA: Recv ZDACW
17-03-17 22:11:58.658 -07 000000012 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = -14.9400 mm (-23904.0 steps). UsingTableMove = False
17-03-17 22:11:58.658 -07 000000012 INF: Y Motor: Moving to 122701 encoder counts
17-03-17 22:11:58.668 -07 000000424 INF: FPGA: 'ZDACW 30670' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:11:58.668 -07 000000438 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:11:58.678 -07 000000012 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-17 22:11:58.688 -07 000000424 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:11:58.688 -07 000000482 INF: FPGA: Recv ZDACR 30670
17-03-17 22:11:58.698 -07 000000424 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:11:58.698 -07 000000424 INF: Z Motor: MoveAbsStepped took 50 ms (did NOT wait for settling yet))
17-03-17 22:11:58.868 -07 000000627 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:11:58.868 -07 000000438 INF: FPGA: 'FOCMRRFOC' command took 3 ms to send, 196 ms to get response, and 224 ms overall
17-03-17 22:12:00.298 -07 000000561 INF: FPGA: Recv YMVTO 122703 23903
17-03-17 22:12:00.298 -07 000000012 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1618 ms to get response, and 1644 ms overall
17-03-17 22:12:00.298 -07 000000012 INF: Y Motor: Position error before settling = 2 encoder counts (0.001 mm)
17-03-17 22:12:00.298 -07 000000012 INF: Y Motor: To move from 74.832 to 59.913 (-14.919 mm) should take 23871 steps, but required 23903 steps (14.939 mm). Slippage = 0.020 mm (0.00%).
17-03-17 22:12:00.298 -07 000000012 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1644 ms, distance = 14.919 mm, average velocity = 9.075 mm/sec
17-03-17 22:12:01.948 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:12:01.948 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 59. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=945, R2=968, Total=1913. Warn if over 250 bubbles per interval.
17-03-17 22:12:03.148 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:12:03.148 -07 000000424 INF: FPGA: Recv YRDPOS 122698
17-03-17 22:12:03.158 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:12:03.158 -07 000000012 INF: Y Motor: Encoder = 122698 = motor step 95857.8 = 59.9111 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:12:03.188 -07 000000012 INF: Y Motor: After move to 59.912609, error = -0.001476, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:12:03.188 -07 000000012 INF: Y Motor: Position error after settling = -3 encoder counts (-0.001 mm), Delta during settling = -5 counts (-0.002 mm)
17-03-17 22:12:03.188 -07 000000012 INF: Y Motor: Moved to 59.9111 after 4543 ms
17-03-17 22:12:03.188 -07 000000618 INF: Z Motor: EndOfMoveAbsStepped: target = -0.140398 mm (DAC = 30670)
17-03-17 22:12:03.188 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:03.188 -07 000000438 INF: FPGA: Recv ZSGSRD 31147
17-03-17 22:12:03.198 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:12:03.208 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:03.208 -07 000000627 INF: FPGA: Recv ZSGSRD 31145
17-03-17 22:12:03.218 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:12:03.218 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:03.218 -07 000000448 INF: FPGA: Recv ZSGSRD 31142
17-03-17 22:12:03.228 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:03.228 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:03.228 -07 000000424 INF: FPGA: Recv ZSGSRD 31148
17-03-17 22:12:03.238 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:03.238 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:03.238 -07 000000627 INF: FPGA: Recv ZSGSRD 31149
17-03-17 22:12:03.248 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:03.248 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:03.248 -07 000000482 INF: FPGA: Recv ZSGSRD 31146
17-03-17 22:12:03.258 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:03.258 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:03.258 -07 000000627 INF: FPGA: Recv ZSGSRD 31144
17-03-17 22:12:03.268 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:03.268 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:03.268 -07 000000482 INF: FPGA: Recv ZSGSRD 31145
17-03-17 22:12:03.278 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:03.278 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:03.278 -07 000000458 INF: FPGA: Recv ZSGSRD 31150
17-03-17 22:12:03.288 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:03.288 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:03.288 -07 000000627 INF: FPGA: Recv ZSGSRD 31139
17-03-17 22:12:03.298 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:03.298 -07 000000618 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:12:03.298 -07 000000502 INF: FPGA: Recv ZPIEZORD 26847
17-03-17 22:12:03.308 -07 000000618 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:03.308 -07 000000618 INF: Z Motor: Piezo is near 37.4 V (nominally 0 to 100 V), expect near 46.8 V, since DAC is at 4.680 V. Piezo Error = -9.4 V.
17-03-17 22:12:03.308 -07 000000618 INF: Z Motor: ReadAdcAverage: Commanded Z = -140.4 um, Read 10 ADC samples: Avg = 31146 (-139.6 uncal um), Error = 0.8 uncal um, Median = 31146 (-139.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 31139 (-139.6 uncal um), Max = 31150 (-139.6 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 22:12:03.308 -07 000000618 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31146, posNoise = 4, negNoise = 7
17-03-17 22:12:03.308 -07 000000618 INF: Z Motor: After move to -0.140398, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:12:03.308 -07 000000618 INF: Z Motor: Settle wait time = 4546 ms, measure time = 114 ms (allowed 150 ms), total time = 4660 ms
17-03-17 22:12:03.308 -07 000000618 INF: Z Motor: Waiting extra 36 ms after reading position to reach expected total of 150 ms
17-03-17 22:12:03.348 -07 000000618 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4702 ms
17-03-17 22:12:03.348 -07 000000618 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:12:03.348 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:12:03.348 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:12:03.348 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:12:03.348 -07 000000448 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:12:03.348 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:12:03.348 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:12:03.358 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:12:03.358 -07 000000502 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-17 22:12:03.378 -07 000000502 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 20 ms.
17-03-17 22:12:03.378 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:12:03.378 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:12:03.378 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:12:03.378 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 22:12:03.378 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 30 ms.
17-03-17 22:12:03.388 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:12:03.428 -07 000000618 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:12:03.518 -07 000000012 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 60, FrontChillerTemperature: 4.008536,
17-03-17 22:12:03.628 -07 000000482 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:12:03.628 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:12:03.628 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:12:03.628 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 22:12:03.668 -07 000000551 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:12:03.668 -07 000000627 INF: FPGA: Recv CAMSNAP
17-03-17 22:12:03.668 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 284 ms overall
17-03-17 22:12:03.748 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 22:12:03.748 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:12:03.748 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 22:12:03.748 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 22:12:03.768 -07 000000482 INF: Image SNR check: start
17-03-17 22:12:03.768 -07 000000448 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:12:03.768 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:12:03.778 -07 000000448 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:12:03.778 -07 000000448 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:12:03.778 -07 000000482 INF: Image SNR check: pass  [peak (Max-Min)=57.72]
17-03-17 22:12:03.778 -07 000000482 INF: Autofocus start
17-03-17 22:12:03.778 -07 000000482 INF: MeasureProfile start
17-03-17 22:12:03.798 -07 000000482 INF: MeasureProfile done
17-03-17 22:12:03.798 -07 000000482 INF: X=-32  Z correction [um]=-0.1591732
17-03-17 22:12:03.798 -07 000000482 INF: Autofocus finished
17-03-17 22:12:03.978 -07 000000438 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:12:03.978 -07 000000448 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:12:03.978 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.9111328125, Z-position -0.140411863378422. ----------
17-03-17 22:12:03.978 -07 000000610 INF: Cycle	60	Tile	1	Exposure Settings		A	447	G	215	T	215	C	447
17-03-17 22:12:03.988 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 29148, sync = True, waitForSettling = True)
17-03-17 22:12:03.988 -07 000000610 INF: Z Motor: Moving to -0.133431 mm, started at -0.140412 mm, distance = 6.98 um
17-03-17 22:12:03.988 -07 000000610 INF: FPGA: Xmit ZDACW 29148\n [Z Motor]
17-03-17 22:12:03.988 -07 000000627 INF: FPGA: Recv ZDACW
17-03-17 22:12:03.998 -07 000000610 INF: FPGA: 'ZDACW 29148' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:03.998 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:12:03.998 -07 000000012 INF: FPGA: Recv ZDACR 29148
17-03-17 22:12:04.008 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:04.008 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:12:04.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:04.158 -07 000000482 INF: FPGA: Recv ZSGSRD 30059
17-03-17 22:12:04.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:12:04.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:04.168 -07 000000458 INF: FPGA: Recv ZSGSRD 30058
17-03-17 22:12:04.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:04.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:04.178 -07 000000012 INF: FPGA: Recv ZSGSRD 30061
17-03-17 22:12:04.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:04.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:04.188 -07 000000438 INF: FPGA: Recv ZSGSRD 30057
17-03-17 22:12:04.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:12:04.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:04.198 -07 000000448 INF: FPGA: Recv ZSGSRD 30060
17-03-17 22:12:04.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:04.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:04.208 -07 000000458 INF: FPGA: Recv ZSGSRD 30058
17-03-17 22:12:04.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:04.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:04.218 -07 000000012 INF: FPGA: Recv ZSGSRD 30062
17-03-17 22:12:04.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:04.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:04.228 -07 000000551 INF: FPGA: Recv ZSGSRD 30059
17-03-17 22:12:04.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:04.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:04.238 -07 000000618 INF: FPGA: Recv ZSGSRD 30056
17-03-17 22:12:04.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:04.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:04.248 -07 000000627 INF: FPGA: Recv ZSGSRD 30060
17-03-17 22:12:04.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:04.258 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:12:04.258 -07 000000448 INF: FPGA: Recv ZPIEZORD 25689
17-03-17 22:12:04.268 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:04.268 -07 000000610 INF: Z Motor: Piezo is near 34.9 V (nominally 0 to 100 V), expect near 44.5 V, since DAC is at 4.448 V. Piezo Error = -9.6 V.
17-03-17 22:12:04.268 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.4 um, Read 10 ADC samples: Avg = 30059 (-132.6 uncal um), Error = 0.8 uncal um, Median = 30059 (-132.6 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 30056 (-132.6 uncal um), Max = 30062 (-132.7 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 22:12:04.268 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30059, posNoise = 3, negNoise = 3
17-03-17 22:12:04.268 -07 000000610 INF: Z Motor: After move to -0.133431, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:12:04.268 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 22:12:04.268 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:12:04.268 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:12:04.268 -07 000000551 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:12:04.268 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:12:04.268 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:12:04.268 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:12:04.268 -07 000000448 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:12:04.268 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:12:04.268 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:12:04.268 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:12:04.268 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:12:04.268 -07 000000448 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-17 22:12:04.268 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:12:04.268 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:12:04.288 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 13 ms.
17-03-17 22:12:04.288 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 18 ms.
17-03-17 22:12:04.288 -07 000000448 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 21 ms.
17-03-17 22:12:04.288 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:12:04.298 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 22:12:04.298 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:12:04.298 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 22:12:04.298 -07 000000448 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 33 ms.
17-03-17 22:12:04.308 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 447 447 215 215 29324 150\n [Camera]
17-03-17 22:12:04.508 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:12:04.948 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 639
17-03-17 22:12:04.948 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 639
17-03-17 22:12:04.948 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:12:04.948 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:12:04.958 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 22:12:04.958 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 639
17-03-17 22:12:04.958 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 639
17-03-17 22:12:04.958 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:12:04.958 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:12:04.958 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 1479623496, 0x0, 418435064) start.
17-03-17 22:12:05.148 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29324 832
17-03-17 22:12:05.298 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning grn on 982
17-03-17 22:12:05.338 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 1479623496, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 22:12:05.338 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-17 22:12:05.338 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:12:05.338 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:12:05.348 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 391 ms.
17-03-17 22:12:05.348 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 22:12:05.348 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:12:05.348 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 22:12:05.348 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:12:05.348 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 22:12:05.508 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1197
17-03-17 22:12:05.508 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1197
17-03-17 22:12:05.508 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:12:05.508 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:12:05.508 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-17 22:12:05.508 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1197
17-03-17 22:12:05.508 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1197
17-03-17 22:12:05.518 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:12:05.628 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:12:05.628 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 22:12:05.698 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP 1389
17-03-17 22:12:05.698 -07 000000012 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:12:05.698 -07 000000610 INF: FPGA: 'CAMDBLSNAP 447 447 215 215 29324 150' command took 2 ms to send, 1388 ms to get response, and 1396 ms overall
17-03-17 22:12:05.708 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 22:12:05.708 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.9111328125, Z-Position -0.133428744780328. ------
17-03-17 22:12:05.708 -07 000000438 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:12:05.708 -07 000000551 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.13982 mm
17-03-17 22:12:05.708 -07 000000551 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:12:05.708 -07 000000502 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-17 22:12:05.708 -07 000000502 INF: Y Motor: Moving to 60.7426 mm, started at 59.9111 mm, delta = 0.8315 mm
17-03-17 22:12:05.708 -07 000000618 INF: Z Motor: Entering MoveAbsStepped (DAC = 30543, sync = True, waitForSettling = False)
17-03-17 22:12:05.708 -07 000000618 INF: Z Motor: Moving to -0.139817 mm, started at -0.133429 mm, distance = -6.39 um
17-03-17 22:12:05.708 -07 000000486 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:12:05.718 -07 000000438 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 22:12:05.718 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:12:05.718 -07 000000627 INF: FPGA: Recv YRDPOS 122698
17-03-17 22:12:05.728 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 22:12:05.728 -07 000000502 INF: Y Motor: Encoder = 122698 = motor step 95857.8 = 59.9111 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:12:05.728 -07 000000502 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:12:05.728 -07 000000502 INF: Y Motor: Moving 1330 steps2
17-03-17 22:12:05.728 -07 000000618 INF: FPGA: Xmit ZDACW 30543\n [Z Motor]
17-03-17 22:12:05.728 -07 000000458 INF: FPGA: Recv ZDACW
17-03-17 22:12:05.738 -07 000000618 INF: FPGA: 'ZDACW 30543' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-17 22:12:05.738 -07 000000438 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:12:05.748 -07 000000502 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:12:05.758 -07 000000618 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:12:05.758 -07 000000458 INF: FPGA: Recv ZDACR 30543
17-03-17 22:12:05.768 -07 000000618 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:12:05.768 -07 000000618 INF: Z Motor: MoveAbsStepped took 52 ms (did NOT wait for settling yet))
17-03-17 22:12:05.908 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 396 ms.
17-03-17 22:12:05.908 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 22:12:05.908 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:12:05.908 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:12:05.908 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 22:12:05.938 -07 000000618 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:12:05.938 -07 000000438 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-17 22:12:06.018 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 398 ms.
17-03-17 22:12:06.018 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 22:12:06.018 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:12:06.028 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:12:06.028 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 518 ms.
17-03-17 22:12:06.118 -07 000000623 INF: FPGA: Recv YMVTILE
17-03-17 22:12:06.118 -07 000000502 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 22:12:06.158 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:12:06.158 -07 000000627 INF: FPGA: Recv YRDPOS 124381
17-03-17 22:12:06.168 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:12:06.168 -07 000000502 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:12:06.168 -07 000000502 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-17 22:12:06.168 -07 000000502 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.831 mm, average velocity = 2.094 mm/sec
17-03-17 22:12:06.948 -07 000000486 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:12:06.948 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 59. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=945, R2=968, Total=1913. Warn if over 250 bubbles per interval.
17-03-17 22:12:07.118 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:12:07.118 -07 000000012 INF: FPGA: Recv YRDPOS 124382
17-03-17 22:12:07.128 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:07.128 -07 000000502 INF: Y Motor: Encoder = 124382 = motor step 97173.4 = 60.7334 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:12:07.148 -07 000000502 INF: Y Motor: After move to 60.742607, error = -0.009209, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:12:07.148 -07 000000502 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 22:12:07.148 -07 000000502 INF: Y Motor: Moved to 60.7334 after 1436 ms (table move)
17-03-17 22:12:07.148 -07 000000551 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139817 mm (DAC = 30543)
17-03-17 22:12:07.148 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:07.158 -07 000000438 INF: FPGA: Recv ZSGSRD 31064
17-03-17 22:12:07.158 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 22:12:07.158 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:07.158 -07 000000502 INF: FPGA: Recv ZSGSRD 31052
17-03-17 22:12:07.168 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:12:07.168 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:07.168 -07 000000458 INF: FPGA: Recv ZSGSRD 31051
17-03-17 22:12:07.178 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:07.178 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:07.178 -07 000000618 INF: FPGA: Recv ZSGSRD 31056
17-03-17 22:12:07.188 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:07.188 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:07.188 -07 000000012 INF: FPGA: Recv ZSGSRD 31048
17-03-17 22:12:07.198 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:07.198 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:07.198 -07 000000478 INF: FPGA: Recv ZSGSRD 31058
17-03-17 22:12:07.208 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:07.208 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:07.208 -07 000000502 INF: FPGA: Recv ZSGSRD 31054
17-03-17 22:12:07.218 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:07.218 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:07.218 -07 000000482 INF: FPGA: Recv ZSGSRD 31051
17-03-17 22:12:07.228 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:07.228 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:07.228 -07 000000459 INF: FPGA: Recv ZSGSRD 31055
17-03-17 22:12:07.238 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:07.238 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:07.238 -07 000000438 INF: FPGA: Recv ZSGSRD 31056
17-03-17 22:12:07.248 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:07.248 -07 000000551 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:12:07.248 -07 000000012 INF: FPGA: Recv ZPIEZORD 27006
17-03-17 22:12:07.258 -07 000000551 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:07.258 -07 000000551 INF: Z Motor: Piezo is near 37.7 V (nominally 0 to 100 V), expect near 46.6 V, since DAC is at 4.661 V. Piezo Error = -8.9 V.
17-03-17 22:12:07.258 -07 000000551 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.8 um, Read 10 ADC samples: Avg = 31054 (-139.0 uncal um), Error = 0.8 uncal um, Median = 31054 (-139.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 31048 (-139.0 uncal um), Max = 31064 (-139.1 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 22:12:07.258 -07 000000551 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31054, posNoise = 10, negNoise = 6
17-03-17 22:12:07.258 -07 000000551 INF: Z Motor: After move to -0.139817, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:12:07.258 -07 000000551 INF: Z Motor: Settle wait time = 1440 ms, measure time = 102 ms (allowed 150 ms), total time = 1542 ms
17-03-17 22:12:07.258 -07 000000551 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 22:12:07.308 -07 000000551 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1595 ms
17-03-17 22:12:07.308 -07 000000551 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:12:07.308 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:12:07.308 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:12:07.308 -07 000000486 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:12:07.308 -07 000000459 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:12:07.308 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:12:07.308 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:12:07.308 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:12:07.308 -07 000000459 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:12:07.318 -07 000000459 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:12:07.318 -07 000000459 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:12:07.318 -07 000000459 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 22:12:07.318 -07 000000459 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 22:12:07.328 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:12:07.368 -07 000000623 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:12:07.568 -07 000000561 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:12:07.568 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:12:07.568 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:12:07.568 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 22:12:07.608 -07 000000478 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:12:07.608 -07 000000458 INF: FPGA: Recv CAMSNAP
17-03-17 22:12:07.608 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 284 ms overall
17-03-17 22:12:07.698 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 22:12:07.698 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:12:07.698 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:12:07.698 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 22:12:07.808 -07 000000012 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:12:07.808 -07 000000551 INF: Autofocus start
17-03-17 22:12:07.808 -07 000000551 INF: MeasureProfile start
17-03-17 22:12:07.808 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:12:07.818 -07 000000012 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 22:12:07.818 -07 000000012 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:12:07.818 -07 000000551 INF: MeasureProfile done
17-03-17 22:12:07.818 -07 000000551 INF: X=32  Z correction [um]=0.1299841
17-03-17 22:12:07.818 -07 000000551 INF: Autofocus finished
17-03-17 22:12:08.018 -07 000000458 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:12:08.018 -07 000000012 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:12:08.018 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.7333984375, Z-position -0.13982083586138. ----------
17-03-17 22:12:08.018 -07 000000610 INF: Cycle	60	Tile	2	Exposure Settings		A	447	G	215	T	215	C	447
17-03-17 22:12:08.028 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 29084, sync = True, waitForSettling = True)
17-03-17 22:12:08.028 -07 000000610 INF: Z Motor: Moving to -0.133138 mm, started at -0.139821 mm, distance = 6.68 um
17-03-17 22:12:08.028 -07 000000610 INF: FPGA: Xmit ZDACW 29084\n [Z Motor]
17-03-17 22:12:08.028 -07 000000448 INF: FPGA: Recv ZDACW
17-03-17 22:12:08.038 -07 000000610 INF: FPGA: 'ZDACW 29084' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:12:08.038 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:12:08.038 -07 000000462 INF: FPGA: Recv ZDACR 29084
17-03-17 22:12:08.048 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:08.048 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:12:08.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:08.198 -07 000000424 INF: FPGA: Recv ZSGSRD 30014
17-03-17 22:12:08.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:12:08.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:08.208 -07 000000012 INF: FPGA: Recv ZSGSRD 30016
17-03-17 22:12:08.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:08.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:08.218 -07 000000448 INF: FPGA: Recv ZSGSRD 30011
17-03-17 22:12:08.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:08.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:08.228 -07 000000502 INF: FPGA: Recv ZSGSRD 30012
17-03-17 22:12:08.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:08.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:08.238 -07 000000424 INF: FPGA: Recv ZSGSRD 30014
17-03-17 22:12:08.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:08.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:08.248 -07 000000438 INF: FPGA: Recv ZSGSRD 30014
17-03-17 22:12:08.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:08.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:08.258 -07 000000458 INF: FPGA: Recv ZSGSRD 30014
17-03-17 22:12:08.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:08.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:08.268 -07 000000502 INF: FPGA: Recv ZSGSRD 30012
17-03-17 22:12:08.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:08.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:08.278 -07 000000478 INF: FPGA: Recv ZSGSRD 30010
17-03-17 22:12:08.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:08.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:08.288 -07 000000551 INF: FPGA: Recv ZSGSRD 30013
17-03-17 22:12:08.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:08.298 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:12:08.298 -07 000000482 INF: FPGA: Recv ZPIEZORD 25669
17-03-17 22:12:08.308 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:08.308 -07 000000610 INF: Z Motor: Piezo is near 34.8 V (nominally 0 to 100 V), expect near 44.4 V, since DAC is at 4.438 V. Piezo Error = -9.5 V.
17-03-17 22:12:08.308 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.1 um, Read 10 ADC samples: Avg = 30013 (-132.3 uncal um), Error = 0.8 uncal um, Median = 30014 (-132.4 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 30010 (-132.3 uncal um), Max = 30016 (-132.4 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 22:12:08.308 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30013, posNoise = 3, negNoise = 3
17-03-17 22:12:08.308 -07 000000610 INF: Z Motor: After move to -0.133138, error = 0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:12:08.308 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 22:12:08.308 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:12:08.308 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:12:08.308 -07 000000482 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:12:08.308 -07 000000551 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:12:08.308 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:12:08.308 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:12:08.308 -07 000000478 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:12:08.308 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:12:08.308 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:12:08.308 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:12:08.308 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:12:08.308 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:12:08.318 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:12:08.318 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:12:08.318 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:12:08.318 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:12:08.328 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 12 ms.
17-03-17 22:12:08.328 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 17 ms.
17-03-17 22:12:08.328 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 13 ms.
17-03-17 22:12:08.328 -07 000000478 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 18 ms.
17-03-17 22:12:08.328 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 447 447 215 215 29261 150\n [Camera]
17-03-17 22:12:08.528 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:12:08.878 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 60, FrontChillerTemperature: 3.989471,
17-03-17 22:12:08.978 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 639
17-03-17 22:12:08.978 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 639
17-03-17 22:12:08.978 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 639
17-03-17 22:12:08.978 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 639
17-03-17 22:12:08.978 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:12:08.978 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:12:08.978 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 1479623496, 0x0, 391868352) start.
17-03-17 22:12:08.978 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:12:08.978 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:12:08.978 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-17 22:12:09.168 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29261 833
17-03-17 22:12:09.318 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning grn on 982
17-03-17 22:12:09.378 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 401 ms.
17-03-17 22:12:09.378 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 1479623496, 0x0, 391868352) end. Duration was 401 ms.
17-03-17 22:12:09.378 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 22:12:09.378 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:12:09.378 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 22:12:09.378 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:12:09.388 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:12:09.388 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-17 22:12:09.388 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:12:09.398 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-17 22:12:09.538 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1197
17-03-17 22:12:09.538 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1197
17-03-17 22:12:09.538 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:12:09.538 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:12:09.538 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1197
17-03-17 22:12:09.538 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) start.
17-03-17 22:12:09.538 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1197
17-03-17 22:12:09.538 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:12:09.538 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:12:09.538 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 22:12:09.728 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP 1389
17-03-17 22:12:09.728 -07 000000502 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:12:09.728 -07 000000610 INF: FPGA: 'CAMDBLSNAP 447 447 215 215 29261 150' command took 2 ms to send, 1394 ms to get response, and 1397 ms overall
17-03-17 22:12:09.728 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 22:12:09.728 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.7333984375, Z-Position -0.133133231021807. ------
17-03-17 22:12:09.738 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:12:09.738 -07 000000012 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.13967 mm
17-03-17 22:12:09.738 -07 000000012 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:12:09.738 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:12:09.738 -07 000000448 INF: Z Motor: Entering MoveAbsStepped (DAC = 30511, sync = True, waitForSettling = False)
17-03-17 22:12:09.738 -07 000000502 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-17 22:12:09.738 -07 000000502 INF: Y Motor: Moving to 61.5726 mm, started at 60.7334 mm, delta = 0.8392 mm
17-03-17 22:12:09.738 -07 000000448 INF: Z Motor: Moving to -0.139670 mm, started at -0.133133 mm, distance = -6.54 um
17-03-17 22:12:09.748 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:09.748 -07 000000448 INF: FPGA: Xmit ZDACW 30511\n [Z Motor]
17-03-17 22:12:09.748 -07 000000462 INF: FPGA: Recv ZDACW
17-03-17 22:12:09.758 -07 000000448 INF: FPGA: 'ZDACW 30511' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 22:12:09.758 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:12:09.758 -07 000000462 INF: FPGA: Recv YRDPOS 124382
17-03-17 22:12:09.768 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-17 22:12:09.768 -07 000000502 INF: Y Motor: Encoder = 124382 = motor step 97173.4 = 60.7334 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:12:09.768 -07 000000502 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:12:09.768 -07 000000502 INF: Y Motor: Moving 1343 steps-20
17-03-17 22:12:09.768 -07 000000618 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:12:09.778 -07 000000448 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:12:09.778 -07 000000462 INF: FPGA: Recv ZDACR 30511
17-03-17 22:12:09.788 -07 000000448 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:12:09.788 -07 000000448 INF: Z Motor: MoveAbsStepped took 45 ms (did NOT wait for settling yet))
17-03-17 22:12:09.788 -07 000000502 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:12:09.938 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 394 ms.
17-03-17 22:12:09.938 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 22:12:09.938 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:12:09.938 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) end. Duration was 397 ms.
17-03-17 22:12:09.938 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 22:12:09.938 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:12:09.938 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:12:09.938 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:12:09.938 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 22:12:09.948 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-17 22:12:09.968 -07 000000478 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:12:09.968 -07 000000618 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 196 ms to get response, and 225 ms overall
17-03-17 22:12:10.168 -07 000000448 INF: FPGA: Recv YMVTILE
17-03-17 22:12:10.168 -07 000000502 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 401 ms overall
17-03-17 22:12:10.208 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:12:10.208 -07 000000618 INF: FPGA: Recv YRDPOS 126083
17-03-17 22:12:10.218 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:12:10.218 -07 000000502 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:12:10.218 -07 000000502 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-17 22:12:10.218 -07 000000502 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 401 ms, distance = 0.839 mm, average velocity = 2.093 mm/sec
17-03-17 22:12:11.168 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:12:11.168 -07 000000448 INF: FPGA: Recv YRDPOS 126083
17-03-17 22:12:11.178 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:12:11.178 -07 000000502 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:12:11.198 -07 000000502 INF: Y Motor: After move to 61.572609, error = -0.008644, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:12:11.198 -07 000000502 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:12:11.198 -07 000000502 INF: Y Motor: Moved to 61.5640 after 1459 ms (table move)
17-03-17 22:12:11.198 -07 000000012 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139670 mm (DAC = 30511)
17-03-17 22:12:11.198 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:11.208 -07 000000448 INF: FPGA: Recv ZSGSRD 31032
17-03-17 22:12:11.208 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-17 22:12:11.208 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:11.208 -07 000000482 INF: FPGA: Recv ZSGSRD 31036
17-03-17 22:12:11.218 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:12:11.218 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:11.218 -07 000000618 INF: FPGA: Recv ZSGSRD 31023
17-03-17 22:12:11.228 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:11.228 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:11.228 -07 000000502 INF: FPGA: Recv ZSGSRD 31031
17-03-17 22:12:11.238 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:11.238 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:11.238 -07 000000618 INF: FPGA: Recv ZSGSRD 31037
17-03-17 22:12:11.248 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:11.248 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:11.248 -07 000000502 INF: FPGA: Recv ZSGSRD 31035
17-03-17 22:12:11.258 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:11.258 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:11.258 -07 000000482 INF: FPGA: Recv ZSGSRD 31041
17-03-17 22:12:11.268 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:11.268 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:11.268 -07 000000462 INF: FPGA: Recv ZSGSRD 31025
17-03-17 22:12:11.278 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:11.278 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:11.278 -07 000000502 INF: FPGA: Recv ZSGSRD 31033
17-03-17 22:12:11.288 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:11.288 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:11.288 -07 000000551 INF: FPGA: Recv ZSGSRD 31031
17-03-17 22:12:11.298 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:11.298 -07 000000012 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:12:11.298 -07 000000478 INF: FPGA: Recv ZPIEZORD 27049
17-03-17 22:12:11.308 -07 000000012 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:11.308 -07 000000012 INF: Z Motor: Piezo is near 37.8 V (nominally 0 to 100 V), expect near 46.6 V, since DAC is at 4.656 V. Piezo Error = -8.8 V.
17-03-17 22:12:11.308 -07 000000012 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.7 um, Read 10 ADC samples: Avg = 31032 (-138.9 uncal um), Error = 0.8 uncal um, Median = 31032 (-138.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 31023 (-138.8 uncal um), Max = 31041 (-138.9 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 22:12:11.308 -07 000000012 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31032, posNoise = 9, negNoise = 9
17-03-17 22:12:11.308 -07 000000012 INF: Z Motor: After move to -0.139670, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:12:11.308 -07 000000012 INF: Z Motor: Settle wait time = 1464 ms, measure time = 101 ms (allowed 150 ms), total time = 1565 ms
17-03-17 22:12:11.308 -07 000000012 INF: Z Motor: Waiting extra 49 ms after reading position to reach expected total of 150 ms
17-03-17 22:12:11.358 -07 000000012 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1619 ms
17-03-17 22:12:11.358 -07 000000012 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:12:11.358 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:12:11.358 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:12:11.358 -07 000000551 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:12:11.358 -07 000000478 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:12:11.358 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:12:11.358 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:12:11.358 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 22:12:11.358 -07 000000478 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:12:11.368 -07 000000478 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:12:11.368 -07 000000478 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:12:11.378 -07 000000478 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 22:12:11.378 -07 000000478 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 22:12:11.378 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:12:11.428 -07 000000502 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:12:11.628 -07 000000551 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:12:11.628 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:12:11.628 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:12:11.628 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610875264, 0x0, 559484976) start.
17-03-17 22:12:11.668 -07 000000012 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:12:11.668 -07 000000502 INF: FPGA: Recv CAMSNAP
17-03-17 22:12:11.668 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 284 ms overall
17-03-17 22:12:11.738 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610875264, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 22:12:11.738 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:12:11.738 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:12:11.738 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 22:12:11.768 -07 000000482 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:12:11.768 -07 000000551 INF: Autofocus start
17-03-17 22:12:11.768 -07 000000551 INF: MeasureProfile start
17-03-17 22:12:11.768 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:12:11.778 -07 000000482 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:12:11.778 -07 000000482 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:12:11.778 -07 000000551 INF: MeasureProfile done
17-03-17 22:12:11.778 -07 000000551 INF: X=-32  Z correction [um]=-0.1591732
17-03-17 22:12:11.778 -07 000000551 INF: Autofocus finished
17-03-17 22:12:11.948 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:12:11.948 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 59. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=945, R2=968, Total=1913. Warn if over 250 bubbles per interval.
17-03-17 22:12:11.978 -07 000000458 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:12:11.978 -07 000000482 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:12:11.978 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.56396484375, Z-position -0.139679503194261. ----------
17-03-17 22:12:11.988 -07 000000610 INF: Cycle	60	Tile	3	Exposure Settings		A	447	G	215	T	215	C	447
17-03-17 22:12:11.988 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28989, sync = True, waitForSettling = True)
17-03-17 22:12:11.988 -07 000000610 INF: Z Motor: Moving to -0.132703 mm, started at -0.139680 mm, distance = 6.98 um
17-03-17 22:12:11.988 -07 000000610 INF: FPGA: Xmit ZDACW 28989\n [Z Motor]
17-03-17 22:12:11.988 -07 000000012 INF: FPGA: Recv ZDACW
17-03-17 22:12:11.998 -07 000000610 INF: FPGA: 'ZDACW 28989' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:12:11.998 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:12:11.998 -07 000000551 INF: FPGA: Recv ZDACR 28989
17-03-17 22:12:12.008 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:12.008 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:12:12.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:12.158 -07 000000482 INF: FPGA: Recv ZSGSRD 29951
17-03-17 22:12:12.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:12:12.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:12.168 -07 000000462 INF: FPGA: Recv ZSGSRD 29947
17-03-17 22:12:12.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:12.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:12.178 -07 000000478 INF: FPGA: Recv ZSGSRD 29943
17-03-17 22:12:12.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:12.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:12.188 -07 000000448 INF: FPGA: Recv ZSGSRD 29947
17-03-17 22:12:12.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:12.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:12.198 -07 000000482 INF: FPGA: Recv ZSGSRD 29946
17-03-17 22:12:12.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:12.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:12.208 -07 000000502 INF: FPGA: Recv ZSGSRD 29950
17-03-17 22:12:12.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:12.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:12.218 -07 000000458 INF: FPGA: Recv ZSGSRD 29948
17-03-17 22:12:12.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:12.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:12.228 -07 000000448 INF: FPGA: Recv ZSGSRD 29944
17-03-17 22:12:12.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:12.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:12.238 -07 000000482 INF: FPGA: Recv ZSGSRD 29949
17-03-17 22:12:12.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:12.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:12.248 -07 000000012 INF: FPGA: Recv ZSGSRD 29950
17-03-17 22:12:12.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:12.258 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:12:12.258 -07 000000551 INF: FPGA: Recv ZPIEZORD 25608
17-03-17 22:12:12.268 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:12.268 -07 000000610 INF: Z Motor: Piezo is near 34.7 V (nominally 0 to 100 V), expect near 44.2 V, since DAC is at 4.423 V. Piezo Error = -9.5 V.
17-03-17 22:12:12.268 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.7 um, Read 10 ADC samples: Avg = 29948 (-131.9 uncal um), Error = 0.8 uncal um, Median = 29948 (-131.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29943 (-131.9 uncal um), Max = 29951 (-131.9 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 22:12:12.268 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29948, posNoise = 3, negNoise = 5
17-03-17 22:12:12.268 -07 000000610 INF: Z Motor: After move to -0.132703, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:12:12.268 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 22:12:12.268 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:12:12.268 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:12:12.268 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:12:12.268 -07 000000478 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:12:12.268 -07 000000448 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:12:12.268 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:12:12.268 -07 000000458 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:12:12.268 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:12:12.268 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:12:12.268 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:12:12.268 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:12:12.268 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:12:12.278 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 22:12:12.278 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:12:12.278 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 22:12:12.278 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:12:12.288 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 22:12:12.288 -07 000000448 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 22:12:12.288 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 22:12:12.288 -07 000000458 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 22:12:12.288 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 447 447 215 215 29166 150\n [Camera]
17-03-17 22:12:12.488 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP turning red on 196
17-03-17 22:12:12.938 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 639
17-03-17 22:12:12.938 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 639
17-03-17 22:12:12.938 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:12:12.938 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:12:12.938 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-17 22:12:12.938 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 639
17-03-17 22:12:12.938 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 639
17-03-17 22:12:12.938 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:12:12.938 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:12:12.938 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-17 22:12:13.128 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29166 832
17-03-17 22:12:13.278 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP turning grn on 982
17-03-17 22:12:13.318 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 22:12:13.318 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 22:12:13.318 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:12:13.318 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 22:12:13.318 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 22:12:13.318 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:12:13.318 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 22:12:13.318 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 22:12:13.318 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:12:13.328 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 22:12:13.498 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1197
17-03-17 22:12:13.498 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1197
17-03-17 22:12:13.498 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:12:13.498 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:12:13.498 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-17 22:12:13.498 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1197
17-03-17 22:12:13.498 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1197
17-03-17 22:12:13.498 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:12:13.498 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:12:13.498 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-17 22:12:13.688 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP 1390
17-03-17 22:12:13.688 -07 000000551 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:12:13.688 -07 000000610 INF: FPGA: 'CAMDBLSNAP 447 447 215 215 29166 150' command took 2 ms to send, 1392 ms to get response, and 1397 ms overall
17-03-17 22:12:13.688 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 22:12:13.688 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.56396484375, Z-Position -0.132715657232592. ------
17-03-17 22:12:13.688 -07 000000458 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:12:13.698 -07 000000012 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.13912 mm
17-03-17 22:12:13.698 -07 000000012 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:12:13.698 -07 000000478 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:12:13.698 -07 000000551 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-17 22:12:13.698 -07 000000551 INF: Y Motor: Moving to 62.4026 mm, started at 61.5640 mm, delta = 0.8386 mm
17-03-17 22:12:13.698 -07 000000462 INF: Z Motor: Entering MoveAbsStepped (DAC = 30391, sync = True, waitForSettling = False)
17-03-17 22:12:13.698 -07 000000462 INF: Z Motor: Moving to -0.139121 mm, started at -0.132716 mm, distance = -6.41 um
17-03-17 22:12:13.708 -07 000000458 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:12:13.708 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:12:13.708 -07 000000478 INF: FPGA: Recv YRDPOS 126084
17-03-17 22:12:13.718 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 22:12:13.718 -07 000000551 INF: Y Motor: Encoder = 126084 = motor step 98503.1 = 61.5645 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:12:13.718 -07 000000462 INF: FPGA: Xmit ZDACW 30391\n [Z Motor]
17-03-17 22:12:13.718 -07 000000478 INF: FPGA: Recv ZDACW
17-03-17 22:12:13.718 -07 000000551 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:12:13.718 -07 000000551 INF: Y Motor: Moving 1341 steps-18
17-03-17 22:12:13.728 -07 000000458 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:12:13.728 -07 000000462 INF: FPGA: 'ZDACW 30391' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 22:12:13.738 -07 000000551 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:12:13.748 -07 000000462 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:12:13.748 -07 000000478 INF: FPGA: Recv ZDACR 30391
17-03-17 22:12:13.758 -07 000000462 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:12:13.758 -07 000000462 INF: Z Motor: MoveAbsStepped took 56 ms (did NOT wait for settling yet))
17-03-17 22:12:13.898 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 402 ms.
17-03-17 22:12:13.898 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 403 ms.
17-03-17 22:12:13.898 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 22:12:13.898 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:12:13.898 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 22:12:13.898 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:12:13.908 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:12:13.908 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-17 22:12:13.908 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:12:13.908 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-17 22:12:13.928 -07 000000478 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:12:13.928 -07 000000458 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 22:12:14.108 -07 000000462 INF: FPGA: Recv YMVTILE
17-03-17 22:12:14.108 -07 000000551 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 393 ms overall
17-03-17 22:12:14.148 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:12:14.158 -07 000000462 INF: FPGA: Recv YRDPOS 127786
17-03-17 22:12:14.158 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:12:14.158 -07 000000551 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:12:14.158 -07 000000551 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-17 22:12:14.158 -07 000000551 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.839 mm, average velocity = 2.129 mm/sec
17-03-17 22:12:14.238 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 60, FrontChillerTemperature: 3.993549,
17-03-17 22:12:15.108 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:12:15.108 -07 000000478 INF: FPGA: Recv YRDPOS 127786
17-03-17 22:12:15.118 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:12:15.118 -07 000000551 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:12:15.138 -07 000000551 INF: Y Motor: After move to 62.402607, error = -0.007099, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:12:15.138 -07 000000551 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:12:15.138 -07 000000551 INF: Y Motor: Moved to 62.3955 after 1439 ms (table move)
17-03-17 22:12:15.138 -07 000000012 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139121 mm (DAC = 30391)
17-03-17 22:12:15.138 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:15.148 -07 000000478 INF: FPGA: Recv ZSGSRD 30949
17-03-17 22:12:15.148 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 22:12:15.148 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:15.148 -07 000000551 INF: FPGA: Recv ZSGSRD 30944
17-03-17 22:12:15.158 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:12:15.158 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:15.158 -07 000000462 INF: FPGA: Recv ZSGSRD 30953
17-03-17 22:12:15.168 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:15.168 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:15.168 -07 000000482 INF: FPGA: Recv ZSGSRD 30949
17-03-17 22:12:15.178 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:15.178 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:15.178 -07 000000551 INF: FPGA: Recv ZSGSRD 30949
17-03-17 22:12:15.188 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:15.188 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:15.188 -07 000000462 INF: FPGA: Recv ZSGSRD 30945
17-03-17 22:12:15.198 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:15.198 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:15.198 -07 000000462 INF: FPGA: Recv ZSGSRD 30942
17-03-17 22:12:15.208 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:15.208 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:15.208 -07 000000478 INF: FPGA: Recv ZSGSRD 30946
17-03-17 22:12:15.218 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:15.218 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:15.218 -07 000000482 INF: FPGA: Recv ZSGSRD 30942
17-03-17 22:12:15.228 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:15.228 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:15.228 -07 000000478 INF: FPGA: Recv ZSGSRD 30950
17-03-17 22:12:15.238 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:15.238 -07 000000012 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:12:15.238 -07 000000482 INF: FPGA: Recv ZPIEZORD 26975
17-03-17 22:12:15.248 -07 000000012 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:15.248 -07 000000012 INF: Z Motor: Piezo is near 37.6 V (nominally 0 to 100 V), expect near 46.4 V, since DAC is at 4.637 V. Piezo Error = -8.7 V.
17-03-17 22:12:15.248 -07 000000012 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.1 um, Read 10 ADC samples: Avg = 30947 (-138.3 uncal um), Error = 0.8 uncal um, Median = 30948 (-138.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30942 (-138.3 uncal um), Max = 30953 (-138.4 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 22:12:15.248 -07 000000012 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30947, posNoise = 6, negNoise = 5
17-03-17 22:12:15.248 -07 000000012 INF: Z Motor: After move to -0.139121, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:12:15.248 -07 000000012 INF: Z Motor: Settle wait time = 1444 ms, measure time = 102 ms (allowed 150 ms), total time = 1546 ms
17-03-17 22:12:15.248 -07 000000012 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 22:12:15.298 -07 000000012 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1600 ms
17-03-17 22:12:15.298 -07 000000012 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:12:15.298 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:12:15.298 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:12:15.298 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:12:15.298 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:12:15.298 -07 000000551 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:12:15.298 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:12:15.298 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 22:12:15.298 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:12:15.308 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:12:15.308 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:12:15.308 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 22:12:15.308 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 22:12:15.318 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:12:15.358 -07 000000478 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:12:15.558 -07 000000012 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:12:15.558 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:12:15.558 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:12:15.558 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) start.
17-03-17 22:12:15.598 -07 000000502 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:12:15.598 -07 000000482 INF: FPGA: Recv CAMSNAP
17-03-17 22:12:15.598 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 284 ms overall
17-03-17 22:12:15.678 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 22:12:15.678 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:12:15.678 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 22:12:15.678 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 22:12:15.698 -07 000000478 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:12:15.698 -07 000000551 INF: Autofocus start
17-03-17 22:12:15.698 -07 000000551 INF: MeasureProfile start
17-03-17 22:12:15.698 -07 000000482 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:12:15.708 -07 000000478 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 22:12:15.708 -07 000000478 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:12:15.708 -07 000000551 INF: MeasureProfile done
17-03-17 22:12:15.708 -07 000000551 INF: X=16  Z correction [um]=0.0530179
17-03-17 22:12:15.708 -07 000000551 INF: Autofocus finished
17-03-17 22:12:15.908 -07 000000012 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:12:15.908 -07 000000478 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 196 ms to get response, and 205 ms overall
17-03-17 22:12:15.918 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.3955078125, Z-position -0.139133445162211. ----------
17-03-17 22:12:15.918 -07 000000610 INF: Cycle	60	Tile	4	Exposure Settings		A	447	G	215	T	215	C	447
17-03-17 22:12:15.918 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28915, sync = True, waitForSettling = True)
17-03-17 22:12:15.918 -07 000000610 INF: Z Motor: Moving to -0.132364 mm, started at -0.139133 mm, distance = 6.77 um
17-03-17 22:12:15.918 -07 000000610 INF: FPGA: Xmit ZDACW 28915\n [Z Motor]
17-03-17 22:12:15.918 -07 000000482 INF: FPGA: Recv ZDACW
17-03-17 22:12:15.928 -07 000000610 INF: FPGA: 'ZDACW 28915' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:12:15.928 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:12:15.928 -07 000000462 INF: FPGA: Recv ZDACR 28915
17-03-17 22:12:15.938 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:15.938 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:12:16.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:16.088 -07 000000012 INF: FPGA: Recv ZSGSRD 29897
17-03-17 22:12:16.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:12:16.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:16.098 -07 000000627 INF: FPGA: Recv ZSGSRD 29900
17-03-17 22:12:16.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:16.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:16.108 -07 000000012 INF: FPGA: Recv ZSGSRD 29897
17-03-17 22:12:16.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:16.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:16.118 -07 000000012 INF: FPGA: Recv ZSGSRD 29890
17-03-17 22:12:16.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:16.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:16.128 -07 000000551 INF: FPGA: Recv ZSGSRD 29901
17-03-17 22:12:16.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:16.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:16.138 -07 000000627 INF: FPGA: Recv ZSGSRD 29892
17-03-17 22:12:16.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:16.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:16.148 -07 000000462 INF: FPGA: Recv ZSGSRD 29898
17-03-17 22:12:16.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:16.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:16.158 -07 000000482 INF: FPGA: Recv ZSGSRD 29896
17-03-17 22:12:16.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:16.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:16.168 -07 000000478 INF: FPGA: Recv ZSGSRD 29893
17-03-17 22:12:16.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:16.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:16.178 -07 000000551 INF: FPGA: Recv ZSGSRD 29896
17-03-17 22:12:16.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:16.188 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:12:16.188 -07 000000459 INF: FPGA: Recv ZPIEZORD 25541
17-03-17 22:12:16.198 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:16.198 -07 000000610 INF: Z Motor: Piezo is near 34.6 V (nominally 0 to 100 V), expect near 44.1 V, since DAC is at 4.412 V. Piezo Error = -9.6 V.
17-03-17 22:12:16.198 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.4 um, Read 10 ADC samples: Avg = 29896 (-131.6 uncal um), Error = 0.8 uncal um, Median = 29896 (-131.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29890 (-131.6 uncal um), Max = 29901 (-131.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 22:12:16.198 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29896, posNoise = 5, negNoise = 6
17-03-17 22:12:16.198 -07 000000610 INF: Z Motor: After move to -0.132364, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:12:16.198 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 22:12:16.198 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:12:16.198 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:12:16.198 -07 000000459 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:12:16.198 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:12:16.198 -07 000000482 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:12:16.198 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:12:16.198 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:12:16.198 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:12:16.198 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 22:12:16.198 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:12:16.198 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-17 22:12:16.198 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:12:16.208 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 22:12:16.208 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:12:16.208 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:12:16.208 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:12:16.218 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 18 ms.
17-03-17 22:12:16.218 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 22:12:16.228 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 17 ms.
17-03-17 22:12:16.228 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 23 ms.
17-03-17 22:12:16.228 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 447 447 215 215 29092 150\n [Camera]
17-03-17 22:12:16.428 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:12:16.868 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 639
17-03-17 22:12:16.868 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 639
17-03-17 22:12:16.878 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:12:16.878 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:12:16.878 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) start.
17-03-17 22:12:16.878 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 639
17-03-17 22:12:16.878 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 639
17-03-17 22:12:16.878 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:12:16.878 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:12:16.878 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-17 22:12:16.948 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:12:16.948 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 59. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=945, R2=968, Total=1913. Warn if over 250 bubbles per interval.
17-03-17 22:12:17.068 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29092 832
17-03-17 22:12:17.218 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP turning grn on 982
17-03-17 22:12:17.268 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) end. Duration was 390 ms.
17-03-17 22:12:17.268 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 22:12:17.268 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:12:17.268 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:12:17.268 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 22:12:17.268 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 392 ms.
17-03-17 22:12:17.268 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 22:12:17.268 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:12:17.278 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:12:17.278 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-17 22:12:17.428 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1197
17-03-17 22:12:17.428 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1197
17-03-17 22:12:17.428 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:12:17.428 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:12:17.428 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) start.
17-03-17 22:12:17.438 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1197
17-03-17 22:12:17.438 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1197
17-03-17 22:12:17.438 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:12:17.438 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:12:17.438 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) start.
17-03-17 22:12:17.618 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP 1389
17-03-17 22:12:17.618 -07 000000012 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:12:17.628 -07 000000610 INF: FPGA: 'CAMDBLSNAP 447 447 215 215 29092 150' command took 3 ms to send, 1389 ms to get response, and 1396 ms overall
17-03-17 22:12:17.628 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 22:12:17.628 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.3955078125, Z-Position -0.132381598201221. ------
17-03-17 22:12:17.748 -07 000000627 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:12:17.748 -07 000000482 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.13908 mm
17-03-17 22:12:17.748 -07 000000482 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:12:17.758 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:12:17.758 -07 000000627 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:12:17.758 -07 000000012 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-17 22:12:17.758 -07 000000012 INF: Y Motor: Moving to 63.2326 mm, started at 62.3955 mm, delta = 0.8371 mm
17-03-17 22:12:17.758 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:12:17.758 -07 000000478 INF: Z Motor: Entering MoveAbsStepped (DAC = 30383, sync = True, waitForSettling = False)
17-03-17 22:12:17.758 -07 000000478 INF: Z Motor: Moving to -0.139084 mm, started at -0.132382 mm, distance = -6.70 um
17-03-17 22:12:17.758 -07 000000502 INF: FPGA: Recv YRDPOS 127787
17-03-17 22:12:17.768 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:12:17.768 -07 000000478 INF: FPGA: Xmit ZDACW 30383\n [Z Motor]
17-03-17 22:12:17.768 -07 000000012 INF: Y Motor: Encoder = 127787 = motor step 99833.6 = 62.3960 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:12:17.768 -07 000000462 INF: FPGA: Recv ZDACW
17-03-17 22:12:17.768 -07 000000012 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:12:17.768 -07 000000012 INF: Y Motor: Moving 1339 steps-15
17-03-17 22:12:17.778 -07 000000478 INF: FPGA: 'ZDACW 30383' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-17 22:12:17.778 -07 000000627 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:12:17.788 -07 000000012 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:12:17.798 -07 000000478 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:12:17.798 -07 000000462 INF: FPGA: Recv ZDACR 30383
17-03-17 22:12:17.808 -07 000000478 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:12:17.808 -07 000000478 INF: Z Motor: MoveAbsStepped took 48 ms (did NOT wait for settling yet))
17-03-17 22:12:17.838 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) end. Duration was 401 ms.
17-03-17 22:12:17.838 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 22:12:17.838 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:12:17.838 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) end. Duration was 406 ms.
17-03-17 22:12:17.838 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-17 22:12:17.838 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:12:17.838 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:12:17.848 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 22:12:17.848 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 413 ms.
17-03-17 22:12:17.848 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-17 22:12:17.978 -07 000000459 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:12:17.978 -07 000000627 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 221 ms overall
17-03-17 22:12:18.158 -07 000000459 INF: FPGA: Recv YMVTILE
17-03-17 22:12:18.158 -07 000000012 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-17 22:12:18.198 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:12:18.208 -07 000000627 INF: FPGA: Recv YRDPOS 129483
17-03-17 22:12:18.208 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:12:18.208 -07 000000012 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:12:18.208 -07 000000012 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-17 22:12:18.208 -07 000000012 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.837 mm, average velocity = 2.125 mm/sec
17-03-17 22:12:19.158 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:12:19.158 -07 000000486 INF: FPGA: Recv YRDPOS 129484
17-03-17 22:12:19.168 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:12:19.168 -07 000000012 INF: Y Motor: Encoder = 129484 = motor step 101159.4 = 63.2246 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:12:19.188 -07 000000012 INF: Y Motor: After move to 63.232609, error = -0.007999, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:12:19.188 -07 000000012 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 22:12:19.188 -07 000000012 INF: Y Motor: Moved to 63.2246 after 1434 ms (table move)
17-03-17 22:12:19.188 -07 000000482 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139084 mm (DAC = 30383)
17-03-17 22:12:19.188 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:19.198 -07 000000627 INF: FPGA: Recv ZSGSRD 30948
17-03-17 22:12:19.198 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 22:12:19.198 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:19.198 -07 000000012 INF: FPGA: Recv ZSGSRD 30939
17-03-17 22:12:19.208 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:12:19.208 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:19.208 -07 000000459 INF: FPGA: Recv ZSGSRD 30937
17-03-17 22:12:19.218 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:19.218 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:19.218 -07 000000459 INF: FPGA: Recv ZSGSRD 30941
17-03-17 22:12:19.228 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:19.228 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:19.228 -07 000000486 INF: FPGA: Recv ZSGSRD 30945
17-03-17 22:12:19.238 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:19.238 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:19.238 -07 000000486 INF: FPGA: Recv ZSGSRD 30945
17-03-17 22:12:19.248 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:19.248 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:19.248 -07 000000627 INF: FPGA: Recv ZSGSRD 30947
17-03-17 22:12:19.258 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:19.258 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:19.258 -07 000000012 INF: FPGA: Recv ZSGSRD 30931
17-03-17 22:12:19.268 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:19.268 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:19.268 -07 000000627 INF: FPGA: Recv ZSGSRD 30935
17-03-17 22:12:19.278 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:19.288 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:19.288 -07 000000627 INF: FPGA: Recv ZSGSRD 30943
17-03-17 22:12:19.298 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:12:19.298 -07 000000482 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:12:19.298 -07 000000459 INF: FPGA: Recv ZPIEZORD 26957
17-03-17 22:12:19.308 -07 000000482 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:19.308 -07 000000482 INF: Z Motor: Piezo is near 37.6 V (nominally 0 to 100 V), expect near 46.4 V, since DAC is at 4.636 V. Piezo Error = -8.8 V.
17-03-17 22:12:19.308 -07 000000482 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.1 um, Read 10 ADC samples: Avg = 30941 (-138.3 uncal um), Error = 0.8 uncal um, Median = 30942 (-138.3 uncal um), StdDev = 6 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 30931 (-138.2 uncal um), Max = 30948 (-138.3 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-17 22:12:19.308 -07 000000482 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30941, posNoise = 7, negNoise = 10
17-03-17 22:12:19.308 -07 000000482 INF: Z Motor: After move to -0.139084, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:12:19.308 -07 000000482 INF: Z Motor: Settle wait time = 1436 ms, measure time = 112 ms (allowed 150 ms), total time = 1548 ms
17-03-17 22:12:19.308 -07 000000482 INF: Z Motor: Waiting extra 38 ms after reading position to reach expected total of 150 ms
17-03-17 22:12:19.348 -07 000000482 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1592 ms
17-03-17 22:12:19.348 -07 000000482 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:12:19.348 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:12:19.348 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:12:19.348 -07 000000486 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:12:19.348 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:12:19.348 -07 000000459 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:12:19.348 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:12:19.348 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:12:19.348 -07 000000459 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:12:19.358 -07 000000459 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:12:19.358 -07 000000459 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:12:19.368 -07 000000459 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 22:12:19.368 -07 000000459 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 22:12:19.368 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:12:19.418 -07 000000012 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:12:19.598 -07 000000012 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 60, FrontChillerTemperature: 3.997626,
17-03-17 22:12:19.618 -07 000000459 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:12:19.618 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:12:19.618 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:12:19.618 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 22:12:19.658 -07 000000627 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:12:19.658 -07 000000012 INF: FPGA: Recv CAMSNAP
17-03-17 22:12:19.658 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 284 ms overall
17-03-17 22:12:19.738 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 119 ms.
17-03-17 22:12:19.738 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:12:19.738 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 22:12:19.738 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 123 ms.
17-03-17 22:12:19.758 -07 000000486 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:12:19.758 -07 000000627 INF: Autofocus start
17-03-17 22:12:19.758 -07 000000627 INF: MeasureProfile start
17-03-17 22:12:19.758 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:12:19.768 -07 000000486 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:12:19.768 -07 000000486 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:12:19.768 -07 000000627 INF: MeasureProfile done
17-03-17 22:12:19.768 -07 000000627 INF: X=16  Z correction [um]=0.0530179
17-03-17 22:12:19.768 -07 000000627 INF: Autofocus finished
17-03-17 22:12:19.968 -07 000000424 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:12:19.968 -07 000000486 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:12:19.968 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.224609375, Z-position -0.139094899889361. ----------
17-03-17 22:12:19.968 -07 000000610 INF: Cycle	60	Tile	5	Exposure Settings		A	447	G	215	T	215	C	447
17-03-17 22:12:19.978 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28907, sync = True, waitForSettling = True)
17-03-17 22:12:19.978 -07 000000610 INF: Z Motor: Moving to -0.132328 mm, started at -0.139095 mm, distance = 6.77 um
17-03-17 22:12:19.978 -07 000000610 INF: FPGA: Xmit ZDACW 28907\n [Z Motor]
17-03-17 22:12:19.978 -07 000000424 INF: FPGA: Recv ZDACW
17-03-17 22:12:19.988 -07 000000610 INF: FPGA: 'ZDACW 28907' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:19.988 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:12:19.988 -07 000000627 INF: FPGA: Recv ZDACR 28907
17-03-17 22:12:19.998 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:19.998 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:12:20.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:20.148 -07 000000486 INF: FPGA: Recv ZSGSRD 29886
17-03-17 22:12:20.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:20.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:20.158 -07 000000459 INF: FPGA: Recv ZSGSRD 29887
17-03-17 22:12:20.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:20.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:20.168 -07 000000424 INF: FPGA: Recv ZSGSRD 29890
17-03-17 22:12:20.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:20.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:20.178 -07 000000623 INF: FPGA: Recv ZSGSRD 29887
17-03-17 22:12:20.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:20.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:20.188 -07 000000486 INF: FPGA: Recv ZSGSRD 29882
17-03-17 22:12:20.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:20.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:20.198 -07 000000459 INF: FPGA: Recv ZSGSRD 29888
17-03-17 22:12:20.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:20.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:20.208 -07 000000561 INF: FPGA: Recv ZSGSRD 29894
17-03-17 22:12:20.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:20.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:20.218 -07 000000627 INF: FPGA: Recv ZSGSRD 29887
17-03-17 22:12:20.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:20.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:20.228 -07 000000627 INF: FPGA: Recv ZSGSRD 29884
17-03-17 22:12:20.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:12:20.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:20.238 -07 000000561 INF: FPGA: Recv ZSGSRD 29887
17-03-17 22:12:20.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:20.248 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:12:20.248 -07 000000482 INF: FPGA: Recv ZPIEZORD 25616
17-03-17 22:12:20.258 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:20.258 -07 000000610 INF: Z Motor: Piezo is near 34.7 V (nominally 0 to 100 V), expect near 44.1 V, since DAC is at 4.411 V. Piezo Error = -9.4 V.
17-03-17 22:12:20.258 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.3 um, Read 10 ADC samples: Avg = 29887 (-131.5 uncal um), Error = 0.8 uncal um, Median = 29887 (-131.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29882 (-131.5 uncal um), Max = 29894 (-131.6 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 22:12:20.258 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29887, posNoise = 7, negNoise = 5
17-03-17 22:12:20.258 -07 000000610 INF: Z Motor: After move to -0.132328, error = 0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:12:20.258 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 22:12:20.258 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:12:20.258 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:12:20.258 -07 000000486 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:12:20.258 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:12:20.258 -07 000000482 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:12:20.258 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:12:20.258 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:12:20.258 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:12:20.258 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 22:12:20.258 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:12:20.258 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:12:20.258 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:12:20.258 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 22:12:20.258 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:12:20.258 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 22:12:20.258 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:12:20.268 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 22:12:20.268 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 22:12:20.278 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-17 22:12:20.278 -07 000000482 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 22:12:20.278 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 447 447 215 215 29084 150\n [Camera]
17-03-17 22:12:20.478 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:12:20.928 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 639
17-03-17 22:12:20.928 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 639
17-03-17 22:12:20.928 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:12:20.928 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 639
17-03-17 22:12:20.928 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 639
17-03-17 22:12:20.928 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:12:20.938 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:12:20.938 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-17 22:12:20.938 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:12:20.938 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-17 22:12:21.118 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29084 832
17-03-17 22:12:21.268 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP turning grn on 982
17-03-17 22:12:21.308 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 371 ms.
17-03-17 22:12:21.308 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-17 22:12:21.308 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:12:21.308 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 375 ms.
17-03-17 22:12:21.308 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 375 ms.
17-03-17 22:12:21.308 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:12:21.318 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:12:21.318 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:12:21.318 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 22:12:21.328 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 22:12:21.488 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1197
17-03-17 22:12:21.488 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1197
17-03-17 22:12:21.488 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:12:21.488 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1197
17-03-17 22:12:21.488 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1197
17-03-17 22:12:21.488 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:12:21.608 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:12:21.608 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-17 22:12:21.608 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:12:21.608 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) start.
17-03-17 22:12:21.678 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP 1390
17-03-17 22:12:21.678 -07 000000486 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:12:21.678 -07 000000610 INF: FPGA: 'CAMDBLSNAP 447 447 215 215 29084 150' command took 2 ms to send, 1392 ms to get response, and 1397 ms overall
17-03-17 22:12:21.678 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 22:12:21.678 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.224609375, Z-Position -0.132323780291945. ------
17-03-17 22:12:21.678 -07 000000623 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:12:21.678 -07 000000561 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.13883 mm
17-03-17 22:12:21.678 -07 000000561 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:12:21.688 -07 000000459 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-17 22:12:21.688 -07 000000459 INF: Y Motor: Moving to 64.0626 mm, started at 63.2246 mm, delta = 0.8380 mm
17-03-17 22:12:21.688 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:12:21.688 -07 000000618 INF: Z Motor: Entering MoveAbsStepped (DAC = 30327, sync = True, waitForSettling = False)
17-03-17 22:12:21.688 -07 000000618 INF: Z Motor: Moving to -0.138828 mm, started at -0.132324 mm, distance = -6.50 um
17-03-17 22:12:21.688 -07 000000486 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:12:21.688 -07 000000623 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 22:12:21.688 -07 000000448 INF: FPGA: Recv YRDPOS 129484
17-03-17 22:12:21.698 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:21.698 -07 000000459 INF: Y Motor: Encoder = 129484 = motor step 101159.4 = 63.2246 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:12:21.698 -07 000000459 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:12:21.698 -07 000000459 INF: Y Motor: Moving 1341 steps-17
17-03-17 22:12:21.698 -07 000000618 INF: FPGA: Xmit ZDACW 30327\n [Z Motor]
17-03-17 22:12:21.698 -07 000000486 INF: FPGA: Recv ZDACW
17-03-17 22:12:21.708 -07 000000618 INF: FPGA: 'ZDACW 30327' command took 1 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:12:21.708 -07 000000623 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:12:21.718 -07 000000459 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:12:21.728 -07 000000618 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:12:21.728 -07 000000448 INF: FPGA: Recv ZDACR 30327
17-03-17 22:12:21.738 -07 000000618 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:12:21.738 -07 000000618 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-17 22:12:21.908 -07 000000012 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:12:21.908 -07 000000623 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 221 ms overall
17-03-17 22:12:21.948 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:12:21.948 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 59. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=945, R2=968, Total=1913. Warn if over 250 bubbles per interval.
17-03-17 22:12:22.008 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 399 ms.
17-03-17 22:12:22.008 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 22:12:22.008 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:12:22.008 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) end. Duration was 398 ms.
17-03-17 22:12:22.008 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 22:12:22.008 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:12:22.018 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:12:22.018 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:12:22.018 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 530 ms.
17-03-17 22:12:22.018 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 533 ms.
17-03-17 22:12:22.098 -07 000000623 INF: FPGA: Recv YMVTILE
17-03-17 22:12:22.098 -07 000000459 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 399 ms overall
17-03-17 22:12:22.148 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:12:22.148 -07 000000502 INF: FPGA: Recv YRDPOS 131189
17-03-17 22:12:22.158 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:12:22.158 -07 000000459 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:12:22.158 -07 000000459 INF: Y Motor: Position error before settling (table move) = -11 encoder counts (-0.005 mm)
17-03-17 22:12:22.158 -07 000000459 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 400 ms, distance = 0.838 mm, average velocity = 2.095 mm/sec
17-03-17 22:12:23.108 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:12:23.108 -07 000000502 INF: FPGA: Recv YRDPOS 131189
17-03-17 22:12:23.118 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:12:23.118 -07 000000459 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:12:23.138 -07 000000459 INF: Y Motor: After move to 64.062607, error = -0.005478, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:12:23.138 -07 000000459 INF: Y Motor: Position error after settling (table move) = -11 encoder counts (-0.005 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:12:23.138 -07 000000459 INF: Y Motor: Moved to 64.0571 after 1452 ms (table move)
17-03-17 22:12:23.138 -07 000000561 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138828 mm (DAC = 30327)
17-03-17 22:12:23.138 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:23.148 -07 000000627 INF: FPGA: Recv ZSGSRD 30902
17-03-17 22:12:23.148 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 22:12:23.148 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:23.148 -07 000000459 INF: FPGA: Recv ZSGSRD 30906
17-03-17 22:12:23.158 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:12:23.158 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:23.158 -07 000000459 INF: FPGA: Recv ZSGSRD 30908
17-03-17 22:12:23.168 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:23.168 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:23.168 -07 000000459 INF: FPGA: Recv ZSGSRD 30896
17-03-17 22:12:23.178 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:23.178 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:23.178 -07 000000459 INF: FPGA: Recv ZSGSRD 30889
17-03-17 22:12:23.188 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:23.188 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:23.188 -07 000000459 INF: FPGA: Recv ZSGSRD 30902
17-03-17 22:12:23.198 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:23.198 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:23.198 -07 000000502 INF: FPGA: Recv ZSGSRD 30898
17-03-17 22:12:23.208 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:23.208 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:23.208 -07 000000502 INF: FPGA: Recv ZSGSRD 30905
17-03-17 22:12:23.218 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:23.218 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:23.218 -07 000000502 INF: FPGA: Recv ZSGSRD 30897
17-03-17 22:12:23.228 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:23.228 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:23.228 -07 000000459 INF: FPGA: Recv ZSGSRD 30906
17-03-17 22:12:23.238 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:23.238 -07 000000561 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:12:23.238 -07 000000459 INF: FPGA: Recv ZPIEZORD 26949
17-03-17 22:12:23.248 -07 000000561 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:23.248 -07 000000561 INF: Z Motor: Piezo is near 37.6 V (nominally 0 to 100 V), expect near 46.3 V, since DAC is at 4.628 V. Piezo Error = -8.7 V.
17-03-17 22:12:23.248 -07 000000561 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.8 um, Read 10 ADC samples: Avg = 30901 (-138.0 uncal um), Error = 0.8 uncal um, Median = 30902 (-138.0 uncal um), StdDev = 6 (0.0 uncal um), Range = 19 (0.1 uncal um), Min = 30889 (-138.0 uncal um), Max = 30908 (-138.1 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 12 (0.1 uncal um)
17-03-17 22:12:23.248 -07 000000561 INF: Z Motor: ADC noise = 12, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30901, posNoise = 7, negNoise = 12
17-03-17 22:12:23.248 -07 000000561 INF: Z Motor: After move to -0.138828, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:12:23.248 -07 000000561 INF: Z Motor: Settle wait time = 1457 ms, measure time = 103 ms (allowed 150 ms), total time = 1560 ms
17-03-17 22:12:23.248 -07 000000561 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 22:12:23.298 -07 000000561 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1612 ms
17-03-17 22:12:23.298 -07 000000561 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:12:23.298 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:12:23.298 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:12:23.298 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:12:23.298 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:12:23.298 -07 000000627 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:12:23.298 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:12:23.298 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 22:12:23.298 -07 000000627 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:12:23.308 -07 000000627 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 22:12:23.308 -07 000000627 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:12:23.308 -07 000000627 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 22:12:23.308 -07 000000627 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 22:12:23.318 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:12:23.358 -07 000000502 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:12:23.558 -07 000000627 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:12:23.558 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:12:23.558 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:12:23.568 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 606469960, 0x0, 559484976) start.
17-03-17 22:12:23.598 -07 000000627 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:12:23.598 -07 000000459 INF: FPGA: Recv CAMSNAP
17-03-17 22:12:23.598 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 284 ms overall
17-03-17 22:12:23.678 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 606469960, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 22:12:23.678 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:12:23.678 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:12:23.678 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 120 ms.
17-03-17 22:12:23.698 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:12:23.698 -07 000000627 INF: Autofocus start
17-03-17 22:12:23.698 -07 000000627 INF: MeasureProfile start
17-03-17 22:12:23.698 -07 000000459 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:12:23.708 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:12:23.708 -07 000000502 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:12:23.708 -07 000000627 INF: MeasureProfile done
17-03-17 22:12:23.708 -07 000000627 INF: X=-16  Z correction [um]=-0.08128808
17-03-17 22:12:23.708 -07 000000627 INF: Autofocus finished
17-03-17 22:12:23.908 -07 000000627 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:12:23.908 -07 000000502 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 205 ms overall
17-03-17 22:12:23.918 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.05712890625, Z-position -0.13883793140369. ----------
17-03-17 22:12:23.918 -07 000000610 INF: Cycle	60	Tile	6	Exposure Settings		A	447	G	215	T	215	C	447
17-03-17 22:12:23.918 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28821, sync = True, waitForSettling = True)
17-03-17 22:12:23.918 -07 000000610 INF: Z Motor: Moving to -0.131934 mm, started at -0.138838 mm, distance = 6.90 um
17-03-17 22:12:23.918 -07 000000610 INF: FPGA: Xmit ZDACW 28821\n [Z Motor]
17-03-17 22:12:23.918 -07 000000502 INF: FPGA: Recv ZDACW
17-03-17 22:12:23.928 -07 000000610 INF: FPGA: 'ZDACW 28821' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 22:12:23.928 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:12:23.928 -07 000000561 INF: FPGA: Recv ZDACR 28821
17-03-17 22:12:23.938 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:23.938 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:12:24.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:24.088 -07 000000502 INF: FPGA: Recv ZSGSRD 29826
17-03-17 22:12:24.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:12:24.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:24.098 -07 000000561 INF: FPGA: Recv ZSGSRD 29828
17-03-17 22:12:24.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:24.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:24.108 -07 000000502 INF: FPGA: Recv ZSGSRD 29825
17-03-17 22:12:24.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:24.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:24.118 -07 000000627 INF: FPGA: Recv ZSGSRD 29825
17-03-17 22:12:24.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:24.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:24.128 -07 000000502 INF: FPGA: Recv ZSGSRD 29830
17-03-17 22:12:24.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:24.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:24.138 -07 000000627 INF: FPGA: Recv ZSGSRD 29822
17-03-17 22:12:24.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:24.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:24.148 -07 000000502 INF: FPGA: Recv ZSGSRD 29828
17-03-17 22:12:24.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:24.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:24.158 -07 000000502 INF: FPGA: Recv ZSGSRD 29825
17-03-17 22:12:24.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:24.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:24.168 -07 000000627 INF: FPGA: Recv ZSGSRD 29832
17-03-17 22:12:24.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:24.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:24.178 -07 000000561 INF: FPGA: Recv ZSGSRD 29827
17-03-17 22:12:24.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:24.188 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:12:24.188 -07 000000627 INF: FPGA: Recv ZPIEZORD 25490
17-03-17 22:12:24.198 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:24.198 -07 000000610 INF: Z Motor: Piezo is near 34.5 V (nominally 0 to 100 V), expect near 44.0 V, since DAC is at 4.398 V. Piezo Error = -9.5 V.
17-03-17 22:12:24.198 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.9 um, Read 10 ADC samples: Avg = 29827 (-131.2 uncal um), Error = 0.8 uncal um, Median = 29826 (-131.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29822 (-131.1 uncal um), Max = 29832 (-131.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 22:12:24.198 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29827, posNoise = 5, negNoise = 5
17-03-17 22:12:24.198 -07 000000610 INF: Z Motor: After move to -0.131934, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:12:24.198 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 22:12:24.198 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:12:24.198 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:12:24.198 -07 000000459 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:12:24.198 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:12:24.198 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:12:24.198 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:12:24.198 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:12:24.198 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:12:24.198 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 22:12:24.198 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:12:24.208 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:12:24.208 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:12:24.208 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 22:12:24.208 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:12:24.208 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:12:24.208 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:12:24.218 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 22:12:24.218 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 22:12:24.218 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 22:12:24.218 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 22:12:24.218 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 447 447 215 215 28998 150\n [Camera]
17-03-17 22:12:24.418 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:12:24.868 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 639
17-03-17 22:12:24.868 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 639
17-03-17 22:12:24.868 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:12:24.868 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 639
17-03-17 22:12:24.868 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 639
17-03-17 22:12:24.868 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:12:24.868 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:12:24.868 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-17 22:12:24.878 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:12:24.878 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-17 22:12:24.958 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 60, FrontChillerTemperature: 4.012614,
17-03-17 22:12:25.058 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28998 832
17-03-17 22:12:25.208 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning grn on 982
17-03-17 22:12:25.258 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 385 ms.
17-03-17 22:12:25.258 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 22:12:25.258 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:12:25.258 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 389 ms.
17-03-17 22:12:25.258 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 22:12:25.258 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:12:25.268 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:12:25.268 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:12:25.268 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 22:12:25.268 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 22:12:25.418 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1197
17-03-17 22:12:25.418 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1197
17-03-17 22:12:25.428 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:12:25.428 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1197
17-03-17 22:12:25.428 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1197
17-03-17 22:12:25.428 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:12:25.428 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 22:12:25.428 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:12:25.428 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:12:25.428 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1479623496, 0x0, 418435064) start.
17-03-17 22:12:25.618 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP 1389
17-03-17 22:12:25.618 -07 000000623 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:12:25.618 -07 000000610 INF: FPGA: 'CAMDBLSNAP 447 447 215 215 28998 150' command took 2 ms to send, 1391 ms to get response, and 1397 ms overall
17-03-17 22:12:25.618 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 22:12:25.618 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.05712890625, Z-Position -0.131938327563439. ------
17-03-17 22:12:25.628 -07 000000623 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:12:25.628 -07 000000438 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.13855 mm
17-03-17 22:12:25.628 -07 000000438 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:12:25.628 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:12:25.628 -07 000000462 INF: Z Motor: Entering MoveAbsStepped (DAC = 30267, sync = True, waitForSettling = False)
17-03-17 22:12:25.628 -07 000000462 INF: Z Motor: Moving to -0.138553 mm, started at -0.131938 mm, distance = -6.62 um
17-03-17 22:12:25.628 -07 000000561 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-17 22:12:25.628 -07 000000561 INF: Y Motor: Moving to 64.8926 mm, started at 64.0571 mm, delta = 0.8355 mm
17-03-17 22:12:25.638 -07 000000623 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:25.638 -07 000000462 INF: FPGA: Xmit ZDACW 30267\n [Z Motor]
17-03-17 22:12:25.638 -07 000000012 INF: FPGA: Recv ZDACW
17-03-17 22:12:25.648 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:12:25.648 -07 000000462 INF: FPGA: 'ZDACW 30267' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 22:12:25.648 -07 000000012 INF: FPGA: Recv YRDPOS 131190
17-03-17 22:12:25.658 -07 000000623 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:12:25.658 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-17 22:12:25.658 -07 000000561 INF: Y Motor: Encoder = 131190 = motor step 102492.2 = 64.0576 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:12:25.658 -07 000000561 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:12:25.658 -07 000000561 INF: Y Motor: Moving 1336 steps-11
17-03-17 22:12:25.668 -07 000000462 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:12:25.668 -07 000000012 INF: FPGA: Recv ZDACR 30267
17-03-17 22:12:25.678 -07 000000462 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:12:25.678 -07 000000462 INF: Z Motor: MoveAbsStepped took 46 ms (did NOT wait for settling yet))
17-03-17 22:12:25.678 -07 000000561 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:12:25.828 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 399 ms.
17-03-17 22:12:25.828 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 22:12:25.828 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:12:25.828 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1479623496, 0x0, 418435064) end. Duration was 399 ms.
17-03-17 22:12:25.828 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 22:12:25.828 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:12:25.828 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:12:25.828 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-17 22:12:25.828 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:12:25.838 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-17 22:12:25.858 -07 000000551 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:12:25.858 -07 000000623 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 22:12:26.048 -07 000000502 INF: FPGA: Recv YMVTILE
17-03-17 22:12:26.048 -07 000000561 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 391 ms overall
17-03-17 22:12:26.088 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:12:26.098 -07 000000551 INF: FPGA: Recv YRDPOS 132873
17-03-17 22:12:26.098 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 5 ms overall
17-03-17 22:12:26.098 -07 000000561 INF: Y Motor: Encoder = 132873 = motor step 103807.0 = 64.8794 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:12:26.098 -07 000000561 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-17 22:12:26.098 -07 000000561 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 391 ms, distance = 0.835 mm, average velocity = 2.137 mm/sec
17-03-17 22:12:26.948 -07 000000551 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:12:26.948 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 59. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=945, R2=968, Total=1913. Warn if over 250 bubbles per interval.
17-03-17 22:12:27.048 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:12:27.048 -07 000000551 INF: FPGA: Recv YRDPOS 132873
17-03-17 22:12:27.058 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:12:27.058 -07 000000561 INF: Y Motor: Encoder = 132873 = motor step 103807.0 = 64.8794 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:12:27.078 -07 000000561 INF: Y Motor: After move to 64.892609, error = -0.013214, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:12:27.078 -07 000000561 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:12:27.078 -07 000000561 INF: Y Motor: Moved to 64.8794 after 1451 ms (table move)
17-03-17 22:12:27.078 -07 000000438 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138553 mm (DAC = 30267)
17-03-17 22:12:27.078 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:27.088 -07 000000551 INF: FPGA: Recv ZSGSRD 30862
17-03-17 22:12:27.088 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 22:12:27.088 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:27.088 -07 000000561 INF: FPGA: Recv ZSGSRD 30859
17-03-17 22:12:27.098 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:12:27.098 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:27.098 -07 000000551 INF: FPGA: Recv ZSGSRD 30863
17-03-17 22:12:27.108 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:27.108 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:27.108 -07 000000551 INF: FPGA: Recv ZSGSRD 30864
17-03-17 22:12:27.118 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:27.118 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:27.118 -07 000000561 INF: FPGA: Recv ZSGSRD 30865
17-03-17 22:12:27.128 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:27.128 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:27.128 -07 000000561 INF: FPGA: Recv ZSGSRD 30861
17-03-17 22:12:27.138 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:27.138 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:27.138 -07 000000551 INF: FPGA: Recv ZSGSRD 30852
17-03-17 22:12:27.148 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:27.148 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:27.148 -07 000000561 INF: FPGA: Recv ZSGSRD 30857
17-03-17 22:12:27.158 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:27.158 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:27.158 -07 000000561 INF: FPGA: Recv ZSGSRD 30855
17-03-17 22:12:27.168 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:27.168 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:27.168 -07 000000551 INF: FPGA: Recv ZSGSRD 30861
17-03-17 22:12:27.178 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:27.178 -07 000000438 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:12:27.178 -07 000000561 INF: FPGA: Recv ZPIEZORD 26871
17-03-17 22:12:27.188 -07 000000438 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:27.188 -07 000000438 INF: Z Motor: Piezo is near 37.4 V (nominally 0 to 100 V), expect near 46.2 V, since DAC is at 4.618 V. Piezo Error = -8.8 V.
17-03-17 22:12:27.188 -07 000000438 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.6 um, Read 10 ADC samples: Avg = 30860 (-137.8 uncal um), Error = 0.8 uncal um, Median = 30861 (-137.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30852 (-137.7 uncal um), Max = 30865 (-137.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 22:12:27.188 -07 000000438 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30860, posNoise = 5, negNoise = 8
17-03-17 22:12:27.188 -07 000000438 INF: Z Motor: After move to -0.138553, error = -0.000021, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:12:27.188 -07 000000438 INF: Z Motor: Settle wait time = 1454 ms, measure time = 102 ms (allowed 150 ms), total time = 1556 ms
17-03-17 22:12:27.188 -07 000000438 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 22:12:27.238 -07 000000438 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1609 ms
17-03-17 22:12:27.238 -07 000000438 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:12:27.238 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:12:27.238 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:12:27.238 -07 000000551 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:12:27.238 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:12:27.238 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:12:27.238 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:12:27.238 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:12:27.238 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:12:27.248 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:12:27.248 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:12:27.258 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 22:12:27.258 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 22:12:27.258 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:12:27.308 -07 000000458 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:12:27.508 -07 000000438 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:12:27.508 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:12:27.508 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:12:27.508 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 22:12:27.548 -07 000000561 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:12:27.548 -07 000000482 INF: FPGA: Recv CAMSNAP
17-03-17 22:12:27.548 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 285 ms overall
17-03-17 22:12:27.638 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 22:12:27.638 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:12:27.638 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:12:27.638 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 22:12:27.648 -07 000000458 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:12:27.648 -07 000000424 INF: Autofocus start
17-03-17 22:12:27.648 -07 000000424 INF: MeasureProfile start
17-03-17 22:12:27.648 -07 000000551 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:12:27.658 -07 000000458 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:12:27.658 -07 000000458 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:12:27.658 -07 000000424 INF: MeasureProfile done
17-03-17 22:12:27.658 -07 000000424 INF: X=-16  Z correction [um]=-0.08128808
17-03-17 22:12:27.658 -07 000000424 INF: Autofocus finished
17-03-17 22:12:27.858 -07 000000459 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:12:27.858 -07 000000458 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:12:27.858 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87939453125, Z-position -0.138574538705878. ----------
17-03-17 22:12:27.858 -07 000000610 INF: Cycle	60	Tile	7	Exposure Settings		A	447	G	215	T	215	C	447
17-03-17 22:12:27.858 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28762, sync = True, waitForSettling = True)
17-03-17 22:12:27.868 -07 000000610 INF: Z Motor: Moving to -0.131664 mm, started at -0.138575 mm, distance = 6.91 um
17-03-17 22:12:27.868 -07 000000610 INF: FPGA: Xmit ZDACW 28762\n [Z Motor]
17-03-17 22:12:27.868 -07 000000448 INF: FPGA: Recv ZDACW
17-03-17 22:12:27.878 -07 000000610 INF: FPGA: 'ZDACW 28762' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:27.878 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:12:27.878 -07 000000448 INF: FPGA: Recv ZDACR 28762
17-03-17 22:12:27.888 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:27.888 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:12:28.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:28.038 -07 000000424 INF: FPGA: Recv ZSGSRD 29791
17-03-17 22:12:28.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:28.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:28.048 -07 000000551 INF: FPGA: Recv ZSGSRD 29790
17-03-17 22:12:28.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:28.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:28.058 -07 000000482 INF: FPGA: Recv ZSGSRD 29787
17-03-17 22:12:28.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:28.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:28.068 -07 000000424 INF: FPGA: Recv ZSGSRD 29780
17-03-17 22:12:28.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:28.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:28.078 -07 000000561 INF: FPGA: Recv ZSGSRD 29786
17-03-17 22:12:28.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:28.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:28.088 -07 000000448 INF: FPGA: Recv ZSGSRD 29790
17-03-17 22:12:28.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:28.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:28.098 -07 000000459 INF: FPGA: Recv ZSGSRD 29782
17-03-17 22:12:28.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:28.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:28.108 -07 000000561 INF: FPGA: Recv ZSGSRD 29786
17-03-17 22:12:28.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:28.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:28.118 -07 000000458 INF: FPGA: Recv ZSGSRD 29789
17-03-17 22:12:28.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:28.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:28.128 -07 000000458 INF: FPGA: Recv ZSGSRD 29784
17-03-17 22:12:28.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:28.138 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:12:28.138 -07 000000627 INF: FPGA: Recv ZPIEZORD 25477
17-03-17 22:12:28.148 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:28.148 -07 000000610 INF: Z Motor: Piezo is near 34.4 V (nominally 0 to 100 V), expect near 43.9 V, since DAC is at 4.389 V. Piezo Error = -9.5 V.
17-03-17 22:12:28.148 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.7 um, Read 10 ADC samples: Avg = 29786 (-130.9 uncal um), Error = 0.8 uncal um, Median = 29786 (-130.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29780 (-130.9 uncal um), Max = 29791 (-130.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 22:12:28.148 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29786, posNoise = 5, negNoise = 6
17-03-17 22:12:28.148 -07 000000610 INF: Z Motor: After move to -0.131664, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:12:28.148 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 22:12:28.148 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:12:28.148 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:12:28.148 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:12:28.148 -07 000000551 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:12:28.148 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:12:28.148 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:12:28.148 -07 000000459 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:12:28.148 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:12:28.148 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 22:12:28.148 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:12:28.148 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 22:12:28.148 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:12:28.148 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 22:12:28.148 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:12:28.148 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:12:28.158 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:12:28.158 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 22:12:28.158 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 22:12:28.168 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 22:12:28.168 -07 000000459 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms.
17-03-17 22:12:28.168 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 447 447 215 215 28939 150\n [Camera]
17-03-17 22:12:28.368 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:12:28.818 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 639
17-03-17 22:12:28.818 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 639
17-03-17 22:12:28.818 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:12:28.818 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:12:28.818 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) start.
17-03-17 22:12:28.818 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 639
17-03-17 22:12:28.818 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 639
17-03-17 22:12:28.818 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:12:28.818 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:12:28.818 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) start.
17-03-17 22:12:29.008 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28939 832
17-03-17 22:12:29.158 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP turning grn on 982
17-03-17 22:12:29.198 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 22:12:29.198 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 22:12:29.198 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:12:29.198 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:12:29.198 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 22:12:29.198 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 22:12:29.198 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:12:29.208 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:12:29.208 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 22:12:29.208 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 22:12:29.378 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1200
17-03-17 22:12:29.378 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1200
17-03-17 22:12:29.378 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:12:29.498 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1200
17-03-17 22:12:29.508 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1200
17-03-17 22:12:29.508 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:12:29.508 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 22:12:29.508 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:12:29.508 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:12:29.508 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 22:12:29.568 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP 1389
17-03-17 22:12:29.568 -07 000000478 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:12:29.568 -07 000000610 INF: FPGA: 'CAMDBLSNAP 447 447 215 215 28939 150' command took 2 ms to send, 1392 ms to get response, and 1397 ms overall
17-03-17 22:12:29.568 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 22:12:29.568 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.87939453125, Z-Position -0.131674934865627. ------
17-03-17 22:12:29.568 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:12:29.568 -07 000000551 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.13825 mm
17-03-17 22:12:29.568 -07 000000551 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:12:29.578 -07 000000438 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-17 22:12:29.578 -07 000000438 INF: Y Motor: Moving to 65.7226 mm, started at 64.8794 mm, delta = 0.8432 mm
17-03-17 22:12:29.578 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:12:29.578 -07 000000448 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:12:29.578 -07 000000458 INF: Z Motor: Entering MoveAbsStepped (DAC = 30201, sync = True, waitForSettling = False)
17-03-17 22:12:29.578 -07 000000458 INF: Z Motor: Moving to -0.138251 mm, started at -0.131675 mm, distance = -6.58 um
17-03-17 22:12:29.578 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 22:12:29.578 -07 000000448 INF: FPGA: Recv YRDPOS 132873
17-03-17 22:12:29.588 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:29.588 -07 000000438 INF: Y Motor: Encoder = 132873 = motor step 103807.0 = 64.8794 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:12:29.588 -07 000000438 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:12:29.588 -07 000000438 INF: Y Motor: Moving 1349 steps-27
17-03-17 22:12:29.588 -07 000000458 INF: FPGA: Xmit ZDACW 30201\n [Z Motor]
17-03-17 22:12:29.588 -07 000000459 INF: FPGA: Recv ZDACW
17-03-17 22:12:29.598 -07 000000424 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:12:29.598 -07 000000458 INF: FPGA: 'ZDACW 30201' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-17 22:12:29.608 -07 000000438 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:12:29.618 -07 000000458 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:12:29.618 -07 000000459 INF: FPGA: Recv ZDACR 30201
17-03-17 22:12:29.628 -07 000000458 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:12:29.628 -07 000000458 INF: Z Motor: MoveAbsStepped took 48 ms (did NOT wait for settling yet))
17-03-17 22:12:29.898 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 391 ms.
17-03-17 22:12:29.898 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 22:12:29.898 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:12:29.898 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 391 ms.
17-03-17 22:12:29.898 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 22:12:29.898 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:12:29.898 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:12:29.898 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:12:29.898 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 524 ms.
17-03-17 22:12:29.908 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-17 22:12:30.728 -07 000000459 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:12:30.728 -07 000000459 INF: FPGA: Recv YMVTILE
17-03-17 22:12:30.728 -07 000000438 INF: FPGA: 'YMVTILE 1327' command took 2 ms to send, 1110 ms to get response, and 1140 ms overall
17-03-17 22:12:30.728 -07 000000424 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 1120 ms to get response, and 1148 ms overall
17-03-17 22:12:30.768 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:12:30.768 -07 000000424 INF: FPGA: Recv YRDPOS 134583
17-03-17 22:12:30.778 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:12:30.778 -07 000000438 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:12:30.778 -07 000000438 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-17 22:12:30.778 -07 000000438 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 1140 ms, distance = 0.843 mm, average velocity = 0.740 mm/sec
17-03-17 22:12:31.038 -07 000000448 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 60, FrontChillerTemperature: 4.012614,
17-03-17 22:12:31.728 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:12:31.728 -07 000000459 INF: FPGA: Recv YRDPOS 134583
17-03-17 22:12:31.738 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:31.738 -07 000000438 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:12:31.758 -07 000000438 INF: Y Motor: After move to 65.722610, error = -0.008255, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:12:31.758 -07 000000438 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:12:31.758 -07 000000438 INF: Y Motor: Moved to 65.7144 after 2186 ms (table move)
17-03-17 22:12:31.768 -07 000000551 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138251 mm (DAC = 30201)
17-03-17 22:12:31.768 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:31.768 -07 000000459 INF: FPGA: Recv ZSGSRD 30814
17-03-17 22:12:31.778 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:31.778 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:31.778 -07 000000438 INF: FPGA: Recv ZSGSRD 30811
17-03-17 22:12:31.788 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:31.788 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:31.788 -07 000000478 INF: FPGA: Recv ZSGSRD 30811
17-03-17 22:12:31.798 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:31.798 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:31.798 -07 000000012 INF: FPGA: Recv ZSGSRD 30812
17-03-17 22:12:31.808 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:31.808 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:31.808 -07 000000478 INF: FPGA: Recv ZSGSRD 30809
17-03-17 22:12:31.818 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:31.818 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:31.818 -07 000000448 INF: FPGA: Recv ZSGSRD 30812
17-03-17 22:12:31.828 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:31.828 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:31.828 -07 000000459 INF: FPGA: Recv ZSGSRD 30809
17-03-17 22:12:31.838 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:31.838 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:31.838 -07 000000448 INF: FPGA: Recv ZSGSRD 30811
17-03-17 22:12:31.848 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:31.848 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:31.848 -07 000000438 INF: FPGA: Recv ZSGSRD 30813
17-03-17 22:12:31.858 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:31.858 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:31.858 -07 000000458 INF: FPGA: Recv ZSGSRD 30814
17-03-17 22:12:31.868 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:31.868 -07 000000551 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:12:31.868 -07 000000012 INF: FPGA: Recv ZPIEZORD 26832
17-03-17 22:12:31.878 -07 000000551 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:31.878 -07 000000551 INF: Z Motor: Piezo is near 37.3 V (nominally 0 to 100 V), expect near 46.1 V, since DAC is at 4.608 V. Piezo Error = -8.8 V.
17-03-17 22:12:31.878 -07 000000551 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.3 um, Read 10 ADC samples: Avg = 30812 (-137.5 uncal um), Error = 0.8 uncal um, Median = 30812 (-137.5 uncal um), StdDev = 2 (0.0 uncal um), Range = 5 (0.0 uncal um), Min = 30809 (-137.4 uncal um), Max = 30814 (-137.5 uncal um), Pos Noise = 2 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 22:12:31.878 -07 000000551 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30812, posNoise = 2, negNoise = 3
17-03-17 22:12:31.878 -07 000000551 INF: Z Motor: After move to -0.138251, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:12:31.878 -07 000000551 INF: Z Motor: Settle wait time = 2189 ms, measure time = 110 ms (allowed 150 ms), total time = 2299 ms
17-03-17 22:12:31.878 -07 000000551 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-17 22:12:31.918 -07 000000551 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2342 ms
17-03-17 22:12:31.918 -07 000000551 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:12:31.918 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:12:31.918 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:12:31.918 -07 000000458 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:12:31.918 -07 000000459 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:12:31.918 -07 000000012 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:12:31.918 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:12:31.918 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 22:12:31.918 -07 000000012 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:12:31.928 -07 000000012 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:12:31.928 -07 000000012 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:12:31.928 -07 000000012 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 22:12:31.928 -07 000000012 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-17 22:12:31.938 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:12:31.948 -07 000000551 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:12:31.948 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 59. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=945, R2=968, Total=1913. Warn if over 250 bubbles per interval.
17-03-17 22:12:31.978 -07 000000012 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:12:32.178 -07 000000438 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:12:32.178 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:12:32.178 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:12:32.178 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 22:12:32.218 -07 000000459 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:12:32.218 -07 000000012 INF: FPGA: Recv CAMSNAP
17-03-17 22:12:32.218 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 275 ms to get response, and 285 ms overall
17-03-17 22:12:32.298 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 120 ms.
17-03-17 22:12:32.298 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:12:32.308 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:12:32.308 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 123 ms.
17-03-17 22:12:32.318 -07 000000478 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:12:32.318 -07 000000012 INF: Autofocus start
17-03-17 22:12:32.318 -07 000000012 INF: MeasureProfile start
17-03-17 22:12:32.318 -07 000000459 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:12:32.328 -07 000000478 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 22:12:32.328 -07 000000478 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:12:32.338 -07 000000012 INF: MeasureProfile done
17-03-17 22:12:32.338 -07 000000012 INF: X=-65  Z correction [um]=-0.3198112
17-03-17 22:12:32.338 -07 000000012 INF: Autofocus finished
17-03-17 22:12:32.528 -07 000000424 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:12:32.528 -07 000000478 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 203 ms overall
17-03-17 22:12:32.528 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.71435546875, Z-position -0.138266176523074. ----------
17-03-17 22:12:32.538 -07 000000610 INF: Cycle	60	Tile	8	Exposure Settings		A	447	G	215	T	215	C	447
17-03-17 22:12:32.538 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28644, sync = True, waitForSettling = True)
17-03-17 22:12:32.538 -07 000000610 INF: Z Motor: Moving to -0.131124 mm, started at -0.138266 mm, distance = 7.14 um
17-03-17 22:12:32.538 -07 000000610 INF: FPGA: Xmit ZDACW 28644\n [Z Motor]
17-03-17 22:12:32.538 -07 000000551 INF: FPGA: Recv ZDACW
17-03-17 22:12:32.548 -07 000000610 INF: FPGA: 'ZDACW 28644' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 22:12:32.548 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:12:32.548 -07 000000012 INF: FPGA: Recv ZDACR 28644
17-03-17 22:12:32.558 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:32.558 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:12:32.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:32.708 -07 000000438 INF: FPGA: Recv ZSGSRD 29698
17-03-17 22:12:32.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:12:32.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:32.718 -07 000000486 INF: FPGA: Recv ZSGSRD 29701
17-03-17 22:12:32.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:32.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:32.728 -07 000000012 INF: FPGA: Recv ZSGSRD 29705
17-03-17 22:12:32.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:32.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:32.738 -07 000000438 INF: FPGA: Recv ZSGSRD 29704
17-03-17 22:12:32.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:32.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:32.748 -07 000000012 INF: FPGA: Recv ZSGSRD 29701
17-03-17 22:12:32.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:32.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:32.758 -07 000000551 INF: FPGA: Recv ZSGSRD 29696
17-03-17 22:12:32.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:32.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:32.768 -07 000000486 INF: FPGA: Recv ZSGSRD 29698
17-03-17 22:12:32.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:32.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:32.778 -07 000000438 INF: FPGA: Recv ZSGSRD 29698
17-03-17 22:12:32.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:32.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:32.788 -07 000000459 INF: FPGA: Recv ZSGSRD 29703
17-03-17 22:12:32.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:32.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:32.798 -07 000000438 INF: FPGA: Recv ZSGSRD 29701
17-03-17 22:12:32.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:32.808 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:12:32.808 -07 000000459 INF: FPGA: Recv ZPIEZORD 25389
17-03-17 22:12:32.818 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:32.818 -07 000000610 INF: Z Motor: Piezo is near 34.2 V (nominally 0 to 100 V), expect near 43.7 V, since DAC is at 4.371 V. Piezo Error = -9.5 V.
17-03-17 22:12:32.818 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.1 um, Read 10 ADC samples: Avg = 29700 (-130.3 uncal um), Error = 0.8 uncal um, Median = 29701 (-130.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29696 (-130.3 uncal um), Max = 29705 (-130.4 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 22:12:32.818 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29700, posNoise = 5, negNoise = 4
17-03-17 22:12:32.818 -07 000000610 INF: Z Motor: After move to -0.131124, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:12:32.818 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 22:12:32.818 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:12:32.818 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:12:32.818 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:12:32.828 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:12:32.828 -07 000000486 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:12:32.828 -07 000000458 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:12:32.828 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:12:32.828 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:12:32.828 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 22:12:32.828 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:12:32.828 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:12:32.828 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:12:32.828 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:12:32.828 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:12:32.828 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:12:32.828 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:12:32.838 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 22:12:32.838 -07 000000458 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 22:12:32.838 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 22:12:32.838 -07 000000486 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 22:12:32.838 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 447 447 215 215 28820 150\n [Camera]
17-03-17 22:12:33.038 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:12:33.488 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 639
17-03-17 22:12:33.488 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 639
17-03-17 22:12:33.488 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:12:33.488 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:12:33.488 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 1479623496, 0x0, 391868352) start.
17-03-17 22:12:33.488 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 639
17-03-17 22:12:33.488 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 639
17-03-17 22:12:33.488 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:12:33.488 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:12:33.488 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 22:12:33.678 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28820 832
17-03-17 22:12:33.828 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning grn on 982
17-03-17 22:12:33.888 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 1479623496, 0x0, 391868352) end. Duration was 400 ms.
17-03-17 22:12:33.888 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 22:12:33.888 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:12:33.888 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 400 ms.
17-03-17 22:12:33.898 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 22:12:33.898 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:12:33.898 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:12:33.898 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 22:12:34.008 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 110 ms.
17-03-17 22:12:34.008 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 518 ms.
17-03-17 22:12:34.048 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1197
17-03-17 22:12:34.048 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1197
17-03-17 22:12:34.048 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:12:34.048 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1197
17-03-17 22:12:34.048 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1197
17-03-17 22:12:34.048 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:12:34.048 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:12:34.048 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 22:12:34.058 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:12:34.058 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 22:12:34.238 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP 1390
17-03-17 22:12:34.238 -07 000000424 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:12:34.238 -07 000000610 INF: FPGA: 'CAMDBLSNAP 447 447 215 215 28820 150' command took 2 ms to send, 1385 ms to get response, and 1397 ms overall
17-03-17 22:12:34.238 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 22:12:34.238 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.71435546875, Z-Position -0.131122452621435. ------
17-03-17 22:12:34.238 -07 000000486 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:12:34.248 -07 000000448 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.13750 mm
17-03-17 22:12:34.248 -07 000000448 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:12:34.248 -07 000000458 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-17 22:12:34.248 -07 000000458 INF: Y Motor: Moving to 66.5526 mm, started at 65.7144 mm, delta = 0.8382 mm
17-03-17 22:12:34.248 -07 000000478 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:12:34.248 -07 000000424 INF: Z Motor: Entering MoveAbsStepped (DAC = 30037, sync = True, waitForSettling = False)
17-03-17 22:12:34.248 -07 000000424 INF: Z Motor: Moving to -0.137501 mm, started at -0.131122 mm, distance = -6.38 um
17-03-17 22:12:34.258 -07 000000424 INF: FPGA: Xmit ZDACW 30037\n [Z Motor]
17-03-17 22:12:34.258 -07 000000486 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:12:34.258 -07 000000478 INF: FPGA: Recv ZDACW
17-03-17 22:12:34.268 -07 000000424 INF: FPGA: 'ZDACW 30037' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 22:12:34.268 -07 000000458 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:12:34.268 -07 000000551 INF: FPGA: Recv YRDPOS 134583
17-03-17 22:12:34.278 -07 000000458 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 22:12:34.278 -07 000000486 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:12:34.278 -07 000000458 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:12:34.278 -07 000000458 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:12:34.278 -07 000000458 INF: Y Motor: Moving 1341 steps-17
17-03-17 22:12:34.288 -07 000000424 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:12:34.288 -07 000000551 INF: FPGA: Recv ZDACR 30037
17-03-17 22:12:34.298 -07 000000424 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:12:34.298 -07 000000458 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:12:34.298 -07 000000424 INF: Z Motor: MoveAbsStepped took 43 ms (did NOT wait for settling yet))
17-03-17 22:12:34.448 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 399 ms.
17-03-17 22:12:34.448 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 22:12:34.448 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:12:34.458 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:12:34.458 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 397 ms.
17-03-17 22:12:34.458 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 22:12:34.458 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:12:34.458 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:12:34.458 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-17 22:12:34.458 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-17 22:12:34.478 -07 000000478 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:12:34.478 -07 000000486 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 22:12:34.678 -07 000000424 INF: FPGA: Recv YMVTILE
17-03-17 22:12:34.678 -07 000000458 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 372 ms to get response, and 401 ms overall
17-03-17 22:12:34.718 -07 000000458 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:12:34.718 -07 000000551 INF: FPGA: Recv YRDPOS 136272
17-03-17 22:12:34.728 -07 000000458 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:34.728 -07 000000458 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:12:34.728 -07 000000458 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 22:12:34.728 -07 000000458 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 401 ms, distance = 0.838 mm, average velocity = 2.090 mm/sec
17-03-17 22:12:35.678 -07 000000458 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:12:35.678 -07 000000438 INF: FPGA: Recv YRDPOS 136272
17-03-17 22:12:35.688 -07 000000458 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:12:35.688 -07 000000458 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:12:35.708 -07 000000458 INF: Y Motor: After move to 66.552605, error = -0.013542, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:12:35.708 -07 000000458 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:12:35.708 -07 000000458 INF: Y Motor: Moved to 66.5391 after 1462 ms (table move)
17-03-17 22:12:35.708 -07 000000448 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137501 mm (DAC = 30037)
17-03-17 22:12:35.708 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:35.718 -07 000000458 INF: FPGA: Recv ZSGSRD 30697
17-03-17 22:12:35.718 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 22:12:35.718 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:35.718 -07 000000458 INF: FPGA: Recv ZSGSRD 30689
17-03-17 22:12:35.728 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:12:35.728 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:35.728 -07 000000458 INF: FPGA: Recv ZSGSRD 30694
17-03-17 22:12:35.738 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:35.738 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:35.738 -07 000000438 INF: FPGA: Recv ZSGSRD 30692
17-03-17 22:12:35.748 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:35.748 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:35.748 -07 000000438 INF: FPGA: Recv ZSGSRD 30690
17-03-17 22:12:35.758 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:35.758 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:35.758 -07 000000438 INF: FPGA: Recv ZSGSRD 30685
17-03-17 22:12:35.768 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:35.768 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:35.768 -07 000000438 INF: FPGA: Recv ZSGSRD 30698
17-03-17 22:12:35.778 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:35.778 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:35.778 -07 000000012 INF: FPGA: Recv ZSGSRD 30694
17-03-17 22:12:35.788 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:35.788 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:35.788 -07 000000486 INF: FPGA: Recv ZSGSRD 30694
17-03-17 22:12:35.798 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:35.798 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:35.798 -07 000000438 INF: FPGA: Recv ZSGSRD 30689
17-03-17 22:12:35.808 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:35.808 -07 000000448 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:12:35.808 -07 000000459 INF: FPGA: Recv ZPIEZORD 26673
17-03-17 22:12:35.818 -07 000000448 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:35.818 -07 000000448 INF: Z Motor: Piezo is near 37.0 V (nominally 0 to 100 V), expect near 45.8 V, since DAC is at 4.583 V. Piezo Error = -8.9 V.
17-03-17 22:12:35.818 -07 000000448 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.5 um, Read 10 ADC samples: Avg = 30692 (-136.7 uncal um), Error = 0.8 uncal um, Median = 30693 (-136.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30685 (-136.7 uncal um), Max = 30698 (-136.7 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 22:12:35.818 -07 000000448 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30692, posNoise = 6, negNoise = 7
17-03-17 22:12:35.818 -07 000000448 INF: Z Motor: After move to -0.137501, error = 0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:12:35.818 -07 000000448 INF: Z Motor: Settle wait time = 1461 ms, measure time = 102 ms (allowed 150 ms), total time = 1563 ms
17-03-17 22:12:35.818 -07 000000448 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 22:12:35.868 -07 000000448 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1620 ms
17-03-17 22:12:35.868 -07 000000448 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:12:35.868 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:12:35.868 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:12:35.868 -07 000000478 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:12:35.868 -07 000000486 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:12:35.868 -07 000000459 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:12:35.868 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:12:35.868 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:12:35.868 -07 000000459 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:12:35.878 -07 000000459 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:12:35.878 -07 000000459 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:12:35.878 -07 000000459 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 22:12:35.878 -07 000000459 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-17 22:12:35.888 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:12:35.928 -07 000000012 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:12:36.128 -07 000000458 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:12:36.128 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:12:36.128 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:12:36.128 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 22:12:36.168 -07 000000438 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:12:36.168 -07 000000012 INF: FPGA: Recv CAMSNAP
17-03-17 22:12:36.168 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 284 ms overall
17-03-17 22:12:36.248 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 118 ms.
17-03-17 22:12:36.248 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:12:36.248 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 22:12:36.248 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 122 ms.
17-03-17 22:12:36.268 -07 000000448 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:12:36.268 -07 000000458 INF: Autofocus start
17-03-17 22:12:36.268 -07 000000458 INF: MeasureProfile start
17-03-17 22:12:36.278 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:12:36.278 -07 000000448 INF: FPGA: 'FOCMRRCUR 80' command took 2 ms to send, 3 ms to get response, and 8 ms overall
17-03-17 22:12:36.278 -07 000000448 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:12:36.288 -07 000000458 INF: MeasureProfile done
17-03-17 22:12:36.288 -07 000000458 INF: X=16  Z correction [um]=0.0530179
17-03-17 22:12:36.288 -07 000000458 INF: Autofocus finished
17-03-17 22:12:36.398 -07 000000486 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 60, FrontChillerTemperature: 3.989471,
17-03-17 22:12:36.478 -07 000000438 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:12:36.478 -07 000000448 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 196 ms to get response, and 202 ms overall
17-03-17 22:12:36.488 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.5390625, Z-position -0.137495271066062. ----------
17-03-17 22:12:36.488 -07 000000610 INF: Cycle	60	Tile	9	Exposure Settings		A	447	G	215	T	215	C	447
17-03-17 22:12:36.488 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28561, sync = True, waitForSettling = True)
17-03-17 22:12:36.488 -07 000000610 INF: Z Motor: Moving to -0.130744 mm, started at -0.137495 mm, distance = 6.75 um
17-03-17 22:12:36.488 -07 000000610 INF: FPGA: Xmit ZDACW 28561\n [Z Motor]
17-03-17 22:12:36.488 -07 000000012 INF: FPGA: Recv ZDACW
17-03-17 22:12:36.498 -07 000000610 INF: FPGA: 'ZDACW 28561' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 22:12:36.498 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:12:36.498 -07 000000448 INF: FPGA: Recv ZDACR 28561
17-03-17 22:12:36.508 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:36.508 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:12:36.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:36.658 -07 000000012 INF: FPGA: Recv ZSGSRD 29648
17-03-17 22:12:36.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:12:36.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:36.668 -07 000000458 INF: FPGA: Recv ZSGSRD 29636
17-03-17 22:12:36.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:36.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:36.678 -07 000000486 INF: FPGA: Recv ZSGSRD 29644
17-03-17 22:12:36.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:36.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:36.688 -07 000000448 INF: FPGA: Recv ZSGSRD 29645
17-03-17 22:12:36.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:36.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:36.698 -07 000000486 INF: FPGA: Recv ZSGSRD 29646
17-03-17 22:12:36.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:36.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:36.708 -07 000000012 INF: FPGA: Recv ZSGSRD 29644
17-03-17 22:12:36.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:36.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:36.718 -07 000000458 INF: FPGA: Recv ZSGSRD 29641
17-03-17 22:12:36.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:36.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:36.738 -07 000000458 INF: FPGA: Recv ZSGSRD 29646
17-03-17 22:12:36.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:12:36.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:36.748 -07 000000478 INF: FPGA: Recv ZSGSRD 29635
17-03-17 22:12:36.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:36.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:36.758 -07 000000459 INF: FPGA: Recv ZSGSRD 29643
17-03-17 22:12:36.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:36.768 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:12:36.768 -07 000000458 INF: FPGA: Recv ZPIEZORD 25329
17-03-17 22:12:36.778 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:36.778 -07 000000610 INF: Z Motor: Piezo is near 34.1 V (nominally 0 to 100 V), expect near 43.6 V, since DAC is at 4.358 V. Piezo Error = -9.5 V.
17-03-17 22:12:36.778 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.7 um, Read 10 ADC samples: Avg = 29643 (-130.0 uncal um), Error = 0.8 uncal um, Median = 29644 (-130.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29635 (-129.9 uncal um), Max = 29648 (-130.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 22:12:36.778 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29643, posNoise = 5, negNoise = 8
17-03-17 22:12:36.778 -07 000000610 INF: Z Motor: After move to -0.130744, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:12:36.778 -07 000000610 INF: Z Motor: MoveAbsStepped took 286 ms)
17-03-17 22:12:36.778 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:12:36.778 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:12:36.778 -07 000000478 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:12:36.778 -07 000000459 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:12:36.778 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:12:36.778 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:12:36.778 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:12:36.778 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:12:36.778 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:12:36.778 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:12:36.778 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:12:36.778 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:12:36.788 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 22:12:36.788 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:12:36.788 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 22:12:36.788 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:12:36.798 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 22:12:36.798 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 22:12:36.798 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 22:12:36.798 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 22:12:36.798 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 447 447 215 215 28738 150\n [Camera]
17-03-17 22:12:36.948 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:12:36.948 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 59. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=945, R2=968, Total=1913. Warn if over 250 bubbles per interval.
17-03-17 22:12:36.998 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP turning red on 195
17-03-17 22:12:37.448 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 639
17-03-17 22:12:37.448 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 639
17-03-17 22:12:37.448 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:12:37.448 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:12:37.448 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1479623496, 0x0, 391868352) start.
17-03-17 22:12:37.448 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 639
17-03-17 22:12:37.448 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 639
17-03-17 22:12:37.448 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:12:37.448 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:12:37.448 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-17 22:12:37.638 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28738 832
17-03-17 22:12:37.788 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP turning grn on 982
17-03-17 22:12:37.838 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1479623496, 0x0, 391868352) end. Duration was 388 ms.
17-03-17 22:12:37.838 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 22:12:37.838 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:12:37.838 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:12:37.838 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 22:12:37.838 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 389 ms.
17-03-17 22:12:37.838 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 22:12:37.838 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:12:37.848 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:12:37.848 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 22:12:37.998 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1197
17-03-17 22:12:37.998 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1197
17-03-17 22:12:38.008 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:12:38.008 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1197
17-03-17 22:12:38.008 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1197
17-03-17 22:12:38.008 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:12:38.008 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:12:38.008 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:12:38.008 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-17 22:12:38.008 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-17 22:12:38.198 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP 1390
17-03-17 22:12:38.198 -07 000000448 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:12:38.198 -07 000000610 INF: FPGA: 'CAMDBLSNAP 447 447 215 215 28738 150' command took 2 ms to send, 1391 ms to get response, and 1397 ms overall
17-03-17 22:12:38.198 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 22:12:38.198 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.5390625, Z-Position -0.130756272529355. ------
17-03-17 22:12:38.198 -07 000000486 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:12:38.198 -07 000000561 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.13747 mm
17-03-17 22:12:38.198 -07 000000561 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:12:38.198 -07 000000459 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-17 22:12:38.198 -07 000000459 INF: Y Motor: Moving to 67.3826 mm, started at 66.5391 mm, delta = 0.8435 mm
17-03-17 22:12:38.208 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:12:38.208 -07 000000486 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 22:12:38.208 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:12:38.208 -07 000000448 INF: Z Motor: Entering MoveAbsStepped (DAC = 30029, sync = True, waitForSettling = False)
17-03-17 22:12:38.208 -07 000000448 INF: Z Motor: Moving to -0.137464 mm, started at -0.130756 mm, distance = -6.71 um
17-03-17 22:12:38.208 -07 000000502 INF: FPGA: Recv YRDPOS 136273
17-03-17 22:12:38.218 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:12:38.218 -07 000000486 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:12:38.218 -07 000000459 INF: Y Motor: Encoder = 136273 = motor step 106463.3 = 66.5396 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:12:38.218 -07 000000459 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:12:38.218 -07 000000459 INF: Y Motor: Moving 1349 steps-28
17-03-17 22:12:38.228 -07 000000448 INF: FPGA: Xmit ZDACW 30029\n [Z Motor]
17-03-17 22:12:38.228 -07 000000438 INF: FPGA: Recv ZDACW
17-03-17 22:12:38.238 -07 000000448 INF: FPGA: 'ZDACW 30029' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-17 22:12:38.238 -07 000000459 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:12:38.248 -07 000000448 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:12:38.248 -07 000000438 INF: FPGA: Recv ZDACR 30029
17-03-17 22:12:38.258 -07 000000448 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:12:38.258 -07 000000448 INF: Z Motor: MoveAbsStepped took 47 ms (did NOT wait for settling yet))
17-03-17 22:12:38.408 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 404 ms.
17-03-17 22:12:38.408 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 22:12:38.408 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:12:38.408 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 404 ms.
17-03-17 22:12:38.408 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-17 22:12:38.408 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:12:38.418 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:12:38.418 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-17 22:12:38.418 -07 000000012 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:12:38.418 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:12:38.418 -07 000000486 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 210 ms overall
17-03-17 22:12:38.428 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-17 22:12:38.608 -07 000000627 INF: FPGA: Recv YMVTILE
17-03-17 22:12:38.608 -07 000000459 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-17 22:12:38.648 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:12:38.658 -07 000000618 INF: FPGA: Recv YRDPOS 137978
17-03-17 22:12:38.658 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 22:12:38.658 -07 000000459 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:12:38.658 -07 000000459 INF: Y Motor: Position error before settling (table move) = -22 encoder counts (-0.011 mm)
17-03-17 22:12:38.658 -07 000000459 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.844 mm, average velocity = 2.141 mm/sec
17-03-17 22:12:39.608 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:12:39.608 -07 000000618 INF: FPGA: Recv YRDPOS 137978
17-03-17 22:12:39.618 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:39.618 -07 000000459 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:12:39.638 -07 000000459 INF: Y Motor: After move to 67.382607, error = -0.010536, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:12:39.638 -07 000000459 INF: Y Motor: Position error after settling (table move) = -22 encoder counts (-0.011 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:12:39.638 -07 000000459 INF: Y Motor: Moved to 67.3721 after 1436 ms (table move)
17-03-17 22:12:39.638 -07 000000561 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137464 mm (DAC = 30029)
17-03-17 22:12:39.638 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:39.648 -07 000000623 INF: FPGA: Recv ZSGSRD 30694
17-03-17 22:12:39.648 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 22:12:39.648 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:39.648 -07 000000478 INF: FPGA: Recv ZSGSRD 30690
17-03-17 22:12:39.658 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:12:39.658 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:39.658 -07 000000448 INF: FPGA: Recv ZSGSRD 30683
17-03-17 22:12:39.668 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:39.668 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:39.668 -07 000000482 INF: FPGA: Recv ZSGSRD 30688
17-03-17 22:12:39.678 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:39.678 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:39.678 -07 000000448 INF: FPGA: Recv ZSGSRD 30695
17-03-17 22:12:39.688 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:39.688 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:39.688 -07 000000623 INF: FPGA: Recv ZSGSRD 30689
17-03-17 22:12:39.698 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:39.698 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:39.698 -07 000000502 INF: FPGA: Recv ZSGSRD 30689
17-03-17 22:12:39.708 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:39.708 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:39.708 -07 000000478 INF: FPGA: Recv ZSGSRD 30685
17-03-17 22:12:39.718 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:39.718 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:39.718 -07 000000459 INF: FPGA: Recv ZSGSRD 30688
17-03-17 22:12:39.728 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:39.728 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:39.728 -07 000000486 INF: FPGA: Recv ZSGSRD 30681
17-03-17 22:12:39.738 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:39.738 -07 000000561 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:12:39.738 -07 000000478 INF: FPGA: Recv ZPIEZORD 26697
17-03-17 22:12:39.748 -07 000000561 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:39.748 -07 000000561 INF: Z Motor: Piezo is near 37.0 V (nominally 0 to 100 V), expect near 45.8 V, since DAC is at 4.582 V. Piezo Error = -8.8 V.
17-03-17 22:12:39.748 -07 000000561 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.5 um, Read 10 ADC samples: Avg = 30688 (-136.7 uncal um), Error = 0.8 uncal um, Median = 30688 (-136.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30681 (-136.6 uncal um), Max = 30695 (-136.7 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 22:12:39.748 -07 000000561 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30688, posNoise = 7, negNoise = 7
17-03-17 22:12:39.748 -07 000000561 INF: Z Motor: After move to -0.137464, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:12:39.748 -07 000000561 INF: Z Motor: Settle wait time = 1435 ms, measure time = 102 ms (allowed 150 ms), total time = 1537 ms
17-03-17 22:12:39.748 -07 000000561 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 22:12:39.798 -07 000000561 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1593 ms
17-03-17 22:12:39.798 -07 000000561 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:12:39.798 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:12:39.798 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:12:39.798 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:12:39.798 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:12:39.798 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:12:39.798 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:12:39.798 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 22:12:39.798 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:12:39.808 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:12:39.808 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:12:39.818 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 22:12:39.818 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 22:12:39.818 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:12:39.858 -07 000000502 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:12:40.058 -07 000000502 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:12:40.058 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:12:40.058 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:12:40.068 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 615280568, 0x0, 559484976) start.
17-03-17 22:12:40.098 -07 000000478 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:12:40.098 -07 000000627 INF: FPGA: Recv CAMSNAP
17-03-17 22:12:40.098 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 284 ms overall
17-03-17 22:12:40.188 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 615280568, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 22:12:40.188 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:12:40.188 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:12:40.188 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 22:12:40.298 -07 000000561 INF: Autofocus start
17-03-17 22:12:40.298 -07 000000561 INF: MeasureProfile start
17-03-17 22:12:40.298 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:12:40.298 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:12:40.308 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 22:12:40.308 -07 000000502 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:12:40.308 -07 000000561 INF: MeasureProfile done
17-03-17 22:12:40.308 -07 000000561 INF: X=0  Z correction [um]=-0.02394831
17-03-17 22:12:40.308 -07 000000561 INF: Autofocus finished
17-03-17 22:12:40.508 -07 000000478 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:12:40.508 -07 000000502 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:12:40.508 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.3720703125, Z-position -0.137469574217495. ----------
17-03-17 22:12:40.508 -07 000000610 INF: Cycle	60	Tile	10	Exposure Settings		A	447	G	215	T	215	C	447
17-03-17 22:12:40.518 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28537, sync = True, waitForSettling = True)
17-03-17 22:12:40.518 -07 000000610 INF: Z Motor: Moving to -0.130634 mm, started at -0.137470 mm, distance = 6.84 um
17-03-17 22:12:40.518 -07 000000610 INF: FPGA: Xmit ZDACW 28537\n [Z Motor]
17-03-17 22:12:40.518 -07 000000459 INF: FPGA: Recv ZDACW
17-03-17 22:12:40.528 -07 000000610 INF: FPGA: 'ZDACW 28537' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:12:40.528 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:12:40.528 -07 000000459 INF: FPGA: Recv ZDACR 28537
17-03-17 22:12:40.538 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:40.538 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:12:40.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:40.688 -07 000000458 INF: FPGA: Recv ZSGSRD 29630
17-03-17 22:12:40.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:12:40.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:40.698 -07 000000012 INF: FPGA: Recv ZSGSRD 29622
17-03-17 22:12:40.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:40.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:40.708 -07 000000458 INF: FPGA: Recv ZSGSRD 29625
17-03-17 22:12:40.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:40.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:40.718 -07 000000459 INF: FPGA: Recv ZSGSRD 29622
17-03-17 22:12:40.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:40.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:40.728 -07 000000486 INF: FPGA: Recv ZSGSRD 29624
17-03-17 22:12:40.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:40.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:40.738 -07 000000012 INF: FPGA: Recv ZSGSRD 29625
17-03-17 22:12:40.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:40.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:40.748 -07 000000486 INF: FPGA: Recv ZSGSRD 29627
17-03-17 22:12:40.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:40.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:40.758 -07 000000459 INF: FPGA: Recv ZSGSRD 29626
17-03-17 22:12:40.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:40.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:40.768 -07 000000458 INF: FPGA: Recv ZSGSRD 29625
17-03-17 22:12:40.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:40.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:40.778 -07 000000459 INF: FPGA: Recv ZSGSRD 29628
17-03-17 22:12:40.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:40.788 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:12:40.788 -07 000000458 INF: FPGA: Recv ZPIEZORD 25331
17-03-17 22:12:40.798 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:40.798 -07 000000610 INF: Z Motor: Piezo is near 34.1 V (nominally 0 to 100 V), expect near 43.5 V, since DAC is at 4.354 V. Piezo Error = -9.4 V.
17-03-17 22:12:40.798 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.6 um, Read 10 ADC samples: Avg = 29625 (-129.9 uncal um), Error = 0.8 uncal um, Median = 29625 (-129.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29622 (-129.8 uncal um), Max = 29630 (-129.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 22:12:40.798 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29625, posNoise = 5, negNoise = 3
17-03-17 22:12:40.798 -07 000000610 INF: Z Motor: After move to -0.130634, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:12:40.798 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 22:12:40.798 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:12:40.798 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:12:40.798 -07 000000459 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:12:40.798 -07 000000478 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:12:40.798 -07 000000458 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:12:40.798 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:12:40.798 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:12:40.798 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:12:40.798 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:12:40.798 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:12:40.808 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:12:40.808 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:12:40.808 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 22:12:40.808 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:12:40.808 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:12:40.808 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:12:40.818 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 22:12:40.818 -07 000000458 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 22:12:40.818 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 22:12:40.818 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 22:12:40.818 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 447 447 215 215 28713 150\n [Camera]
17-03-17 22:12:41.018 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:12:41.468 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 639
17-03-17 22:12:41.468 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 639
17-03-17 22:12:41.468 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:12:41.468 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:12:41.468 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) start.
17-03-17 22:12:41.468 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 639
17-03-17 22:12:41.468 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 639
17-03-17 22:12:41.468 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:12:41.598 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:12:41.598 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-17 22:12:41.658 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28713 832
17-03-17 22:12:41.758 -07 000000458 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 60, FrontChillerTemperature: 3.99219,
17-03-17 22:12:41.808 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP turning grn on 982
17-03-17 22:12:41.858 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) end. Duration was 386 ms.
17-03-17 22:12:41.858 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 22:12:41.858 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:12:41.858 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:12:41.858 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 22:12:41.948 -07 000000459 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:12:41.948 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 59. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=945, R2=968, Total=1913. Warn if over 250 bubbles per interval.
17-03-17 22:12:41.958 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 368 ms.
17-03-17 22:12:41.958 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 369 ms.
17-03-17 22:12:41.958 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:12:41.968 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 22:12:41.968 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 501 ms.
17-03-17 22:12:42.028 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1197
17-03-17 22:12:42.028 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1197
17-03-17 22:12:42.028 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:12:42.028 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1197
17-03-17 22:12:42.028 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1197
17-03-17 22:12:42.028 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:12:42.038 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:12:42.038 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-17 22:12:42.038 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:12:42.038 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-17 22:12:42.218 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP 1390
17-03-17 22:12:42.218 -07 000000502 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:12:42.218 -07 000000610 INF: FPGA: 'CAMDBLSNAP 447 447 215 215 28713 150' command took 2 ms to send, 1392 ms to get response, and 1396 ms overall
17-03-17 22:12:42.218 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 22:12:42.218 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.3720703125, Z-Position -0.130640636710803. ------
17-03-17 22:12:42.218 -07 000000502 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.13678 mm
17-03-17 22:12:42.218 -07 000000502 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:12:42.228 -07 000000478 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:12:42.228 -07 000000458 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-17 22:12:42.228 -07 000000458 INF: Y Motor: Moving to 68.2126 mm, started at 67.3721 mm, delta = 0.8405 mm
17-03-17 22:12:42.228 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:12:42.228 -07 000000561 INF: Z Motor: Entering MoveAbsStepped (DAC = 29879, sync = True, waitForSettling = False)
17-03-17 22:12:42.228 -07 000000561 INF: Z Motor: Moving to -0.136777 mm, started at -0.130641 mm, distance = -6.14 um
17-03-17 22:12:42.238 -07 000000478 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:12:42.238 -07 000000458 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:12:42.238 -07 000000618 INF: FPGA: Recv YRDPOS 137979
17-03-17 22:12:42.248 -07 000000458 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 22:12:42.248 -07 000000458 INF: Y Motor: Encoder = 137979 = motor step 107796.1 = 67.3726 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:12:42.248 -07 000000561 INF: FPGA: Xmit ZDACW 29879\n [Z Motor]
17-03-17 22:12:42.248 -07 000000458 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:12:42.248 -07 000000458 INF: Y Motor: Moving 1344 steps-22
17-03-17 22:12:42.248 -07 000000424 INF: FPGA: Recv ZDACW
17-03-17 22:12:42.258 -07 000000478 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:12:42.258 -07 000000561 INF: FPGA: 'ZDACW 29879' command took 1 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 22:12:42.268 -07 000000458 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:12:42.278 -07 000000561 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:12:42.278 -07 000000618 INF: FPGA: Recv ZDACR 29879
17-03-17 22:12:42.288 -07 000000561 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:12:42.288 -07 000000561 INF: Z Motor: MoveAbsStepped took 56 ms (did NOT wait for settling yet))
17-03-17 22:12:42.418 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 22:12:42.418 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 22:12:42.418 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:12:42.418 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:12:42.428 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 384 ms.
17-03-17 22:12:42.428 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 22:12:42.428 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:12:42.428 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:12:42.428 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 22:12:42.428 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 22:12:42.458 -07 000000551 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:12:42.458 -07 000000478 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 22:12:42.638 -07 000000438 INF: FPGA: Recv YMVTILE
17-03-17 22:12:42.638 -07 000000458 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-17 22:12:42.678 -07 000000458 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:12:42.688 -07 000000012 INF: FPGA: Recv YRDPOS 139684
17-03-17 22:12:42.688 -07 000000458 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:12:42.688 -07 000000458 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:12:42.688 -07 000000458 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-17 22:12:42.688 -07 000000458 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.841 mm, average velocity = 2.133 mm/sec
17-03-17 22:12:43.638 -07 000000458 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:12:43.638 -07 000000438 INF: FPGA: Recv YRDPOS 139684
17-03-17 22:12:43.648 -07 000000458 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:43.648 -07 000000458 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:12:43.668 -07 000000458 INF: Y Motor: After move to 68.212608, error = -0.007530, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:12:43.668 -07 000000458 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:12:43.668 -07 000000458 INF: Y Motor: Moved to 68.2051 after 1439 ms (table move)
17-03-17 22:12:43.668 -07 000000502 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136777 mm (DAC = 29879)
17-03-17 22:12:43.668 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:43.668 -07 000000486 INF: FPGA: Recv ZSGSRD 30584
17-03-17 22:12:43.678 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:12:43.678 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:43.678 -07 000000459 INF: FPGA: Recv ZSGSRD 30573
17-03-17 22:12:43.688 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:43.688 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:43.688 -07 000000459 INF: FPGA: Recv ZSGSRD 30579
17-03-17 22:12:43.698 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:43.698 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:43.698 -07 000000459 INF: FPGA: Recv ZSGSRD 30574
17-03-17 22:12:43.708 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:43.708 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:43.708 -07 000000459 INF: FPGA: Recv ZSGSRD 30582
17-03-17 22:12:43.718 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:43.718 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:43.718 -07 000000458 INF: FPGA: Recv ZSGSRD 30584
17-03-17 22:12:43.728 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:43.728 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:43.728 -07 000000458 INF: FPGA: Recv ZSGSRD 30579
17-03-17 22:12:43.738 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:43.738 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:43.738 -07 000000459 INF: FPGA: Recv ZSGSRD 30581
17-03-17 22:12:43.748 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:43.748 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:43.748 -07 000000459 INF: FPGA: Recv ZSGSRD 30575
17-03-17 22:12:43.758 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:43.758 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:43.758 -07 000000458 INF: FPGA: Recv ZSGSRD 30582
17-03-17 22:12:43.768 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:43.768 -07 000000502 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:12:43.768 -07 000000459 INF: FPGA: Recv ZPIEZORD 26602
17-03-17 22:12:43.778 -07 000000502 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:43.778 -07 000000502 INF: Z Motor: Piezo is near 36.8 V (nominally 0 to 100 V), expect near 45.6 V, since DAC is at 4.559 V. Piezo Error = -8.8 V.
17-03-17 22:12:43.778 -07 000000502 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.8 um, Read 10 ADC samples: Avg = 30579 (-136.0 uncal um), Error = 0.8 uncal um, Median = 30580 (-136.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30573 (-135.9 uncal um), Max = 30584 (-136.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 22:12:43.778 -07 000000502 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30579, posNoise = 5, negNoise = 6
17-03-17 22:12:43.778 -07 000000502 INF: Z Motor: After move to -0.136777, error = 0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:12:43.778 -07 000000502 INF: Z Motor: Settle wait time = 1443 ms, measure time = 104 ms (allowed 150 ms), total time = 1547 ms
17-03-17 22:12:43.778 -07 000000502 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 22:12:43.828 -07 000000502 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1600 ms
17-03-17 22:12:43.828 -07 000000502 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:12:43.828 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:12:43.828 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:12:43.828 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:12:43.828 -07 000000551 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:12:43.828 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:12:43.828 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:12:43.828 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:12:43.828 -07 000000551 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:12:43.838 -07 000000551 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:12:43.838 -07 000000551 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:12:43.848 -07 000000551 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 22:12:43.848 -07 000000551 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 22:12:43.848 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:12:43.898 -07 000000486 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:12:44.098 -07 000000458 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:12:44.098 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:12:44.098 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:12:44.098 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610341080, 0x0, 559484976) start.
17-03-17 22:12:44.128 -07 000000551 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:12:44.138 -07 000000424 INF: FPGA: Recv CAMSNAP
17-03-17 22:12:44.138 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 285 ms overall
17-03-17 22:12:44.218 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610341080, 0x0, 559484976) end. Duration was 120 ms.
17-03-17 22:12:44.218 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:12:44.218 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 22:12:44.218 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 124 ms.
17-03-17 22:12:44.368 -07 000000561 INF: Autofocus start
17-03-17 22:12:44.368 -07 000000561 INF: MeasureProfile start
17-03-17 22:12:44.368 -07 000000478 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:12:44.368 -07 000000486 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:12:44.378 -07 000000478 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:12:44.378 -07 000000478 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:12:44.378 -07 000000561 INF: MeasureProfile done
17-03-17 22:12:44.378 -07 000000561 INF: X=80  Z correction [um]=0.3608828
17-03-17 22:12:44.378 -07 000000561 INF: Autofocus finished
17-03-17 22:12:44.578 -07 000000551 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:12:44.578 -07 000000478 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 204 ms overall
17-03-17 22:12:44.588 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.205078125, Z-position -0.136769335094043. ----------
17-03-17 22:12:44.588 -07 000000610 INF: Cycle	60	Tile	11	Exposure Settings		A	447	G	215	T	215	C	447
17-03-17 22:12:44.588 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28470, sync = True, waitForSettling = True)
17-03-17 22:12:44.588 -07 000000610 INF: Z Motor: Moving to -0.130327 mm, started at -0.136769 mm, distance = 6.44 um
17-03-17 22:12:44.588 -07 000000610 INF: FPGA: Xmit ZDACW 28470\n [Z Motor]
17-03-17 22:12:44.588 -07 000000478 INF: FPGA: Recv ZDACW
17-03-17 22:12:44.598 -07 000000610 INF: FPGA: 'ZDACW 28470' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:12:44.598 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:12:44.598 -07 000000478 INF: FPGA: Recv ZDACR 28470
17-03-17 22:12:44.608 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:44.608 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:12:44.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:44.758 -07 000000478 INF: FPGA: Recv ZSGSRD 29577
17-03-17 22:12:44.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:12:44.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:44.768 -07 000000486 INF: FPGA: Recv ZSGSRD 29578
17-03-17 22:12:44.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:44.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:44.778 -07 000000486 INF: FPGA: Recv ZSGSRD 29579
17-03-17 22:12:44.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:44.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:44.788 -07 000000486 INF: FPGA: Recv ZSGSRD 29576
17-03-17 22:12:44.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:44.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:44.798 -07 000000478 INF: FPGA: Recv ZSGSRD 29572
17-03-17 22:12:44.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:44.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:44.808 -07 000000478 INF: FPGA: Recv ZSGSRD 29580
17-03-17 22:12:44.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:44.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:44.818 -07 000000424 INF: FPGA: Recv ZSGSRD 29573
17-03-17 22:12:44.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:44.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:44.828 -07 000000424 INF: FPGA: Recv ZSGSRD 29577
17-03-17 22:12:44.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:44.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:44.838 -07 000000486 INF: FPGA: Recv ZSGSRD 29578
17-03-17 22:12:44.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:44.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:44.848 -07 000000478 INF: FPGA: Recv ZSGSRD 29576
17-03-17 22:12:44.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:44.858 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:12:44.858 -07 000000478 INF: FPGA: Recv ZPIEZORD 25266
17-03-17 22:12:44.868 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:44.868 -07 000000610 INF: Z Motor: Piezo is near 34.0 V (nominally 0 to 100 V), expect near 43.4 V, since DAC is at 4.344 V. Piezo Error = -9.5 V.
17-03-17 22:12:44.868 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.3 um, Read 10 ADC samples: Avg = 29577 (-129.6 uncal um), Error = 0.8 uncal um, Median = 29577 (-129.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29572 (-129.5 uncal um), Max = 29580 (-129.6 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 22:12:44.868 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29577, posNoise = 3, negNoise = 5
17-03-17 22:12:44.868 -07 000000610 INF: Z Motor: After move to -0.130327, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:12:44.868 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-17 22:12:44.868 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:12:44.868 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:12:44.868 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:12:44.868 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:12:44.868 -07 000000478 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:12:44.868 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:12:44.868 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:12:44.868 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:12:44.868 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 22:12:44.868 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:12:44.868 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:12:44.868 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:12:44.878 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:12:44.878 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:12:44.878 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 22:12:44.878 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:12:44.888 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 22:12:44.888 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 22:12:44.888 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 11 ms.
17-03-17 22:12:44.888 -07 000000478 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 22:12:44.888 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 447 447 215 215 28647 150\n [Camera]
17-03-17 22:12:45.088 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:12:45.538 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 639
17-03-17 22:12:45.538 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 639
17-03-17 22:12:45.538 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:12:45.538 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 639
17-03-17 22:12:45.538 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 639
17-03-17 22:12:45.538 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:12:45.538 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:12:45.538 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 22:12:45.538 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:12:45.538 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 579324120, 0x0, 391868352) start.
17-03-17 22:12:45.728 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28647 832
17-03-17 22:12:45.878 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning grn on 985
17-03-17 22:12:45.918 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 579324120, 0x0, 391868352) end. Duration was 379 ms.
17-03-17 22:12:45.918 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-17 22:12:45.918 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:12:45.918 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 382 ms.
17-03-17 22:12:45.918 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-17 22:12:45.918 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:12:45.928 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:12:45.928 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 22:12:45.928 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:12:45.938 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 22:12:46.088 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1197
17-03-17 22:12:46.088 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1197
17-03-17 22:12:46.098 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:12:46.098 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:12:46.098 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1479623496, 0x0, 391868352) start.
17-03-17 22:12:46.098 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1197
17-03-17 22:12:46.098 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1197
17-03-17 22:12:46.098 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:12:46.098 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:12:46.098 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-17 22:12:46.288 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP 1389
17-03-17 22:12:46.288 -07 000000618 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:12:46.288 -07 000000610 INF: FPGA: 'CAMDBLSNAP 447 447 215 215 28647 150' command took 2 ms to send, 1391 ms to get response, and 1397 ms overall
17-03-17 22:12:46.288 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 22:12:46.288 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.205078125, Z-Position -0.130332274527999. ------
17-03-17 22:12:46.288 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:12:46.288 -07 000000486 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.13701 mm
17-03-17 22:12:46.288 -07 000000486 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:12:46.498 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1479623496, 0x0, 391868352) end. Duration was 406 ms.
17-03-17 22:12:46.498 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-17 22:12:46.498 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:12:46.508 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 404 ms.
17-03-17 22:12:46.508 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-17 22:12:46.508 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:12:46.508 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 22:12:46.508 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 415 ms.
17-03-17 22:12:46.508 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:12:46.518 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 419 ms.
17-03-17 22:12:46.528 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:12:46.528 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 233 ms to get response, and 236 ms overall
17-03-17 22:12:46.528 -07 000000561 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-17 22:12:46.528 -07 000000561 INF: Y Motor: Moving to 69.0426 mm, started at 68.2051 mm, delta = 0.8375 mm
17-03-17 22:12:46.528 -07 000000618 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:12:46.528 -07 000000424 INF: Z Motor: Entering MoveAbsStepped (DAC = 29931, sync = True, waitForSettling = False)
17-03-17 22:12:46.528 -07 000000424 INF: Z Motor: Moving to -0.137015 mm, started at -0.130332 mm, distance = -6.68 um
17-03-17 22:12:46.538 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:12:46.548 -07 000000424 INF: FPGA: Xmit ZDACW 29931\n [Z Motor]
17-03-17 22:12:47.228 -07 000000623 INF: FPGA: Recv YRDPOS 139685
17-03-17 22:12:47.228 -07 000000623 INF: FPGA: Recv ZDACW
17-03-17 22:12:47.228 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 680 ms to get response, and 696 ms overall
17-03-17 22:12:47.228 -07 000000424 INF: FPGA: 'ZDACW 29931' command took 0 ms to send, 670 ms to get response, and 696 ms overall
17-03-17 22:12:47.228 -07 000000623 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:12:47.228 -07 000000623 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:12:47.228 -07 000000618 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 692 ms to get response, and 698 ms overall
17-03-17 22:12:47.228 -07 000000424 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:12:47.228 -07 000000561 INF: Y Motor: Encoder = 139685 = motor step 109128.9 = 68.2056 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:12:47.228 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 59. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=945, R2=968, Total=1913. Warn if over 250 bubbles per interval.
17-03-17 22:12:47.228 -07 000000623 INF: FPGA: Recv ZDACR 29931
17-03-17 22:12:47.228 -07 000000561 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:12:47.228 -07 000000561 INF: Y Motor: Moving 1339 steps-15
17-03-17 22:12:47.238 -07 000000424 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:12:47.238 -07 000000424 INF: Z Motor: MoveAbsStepped took 705 ms (did NOT wait for settling yet))
17-03-17 22:12:47.238 -07 000000561 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:12:47.538 -07 000000448 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 60, FrontChillerTemperature: 4.030322,
17-03-17 22:12:47.608 -07 000000462 INF: FPGA: Recv YMVTILE
17-03-17 22:12:47.608 -07 000000561 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 381 ms overall
17-03-17 22:12:47.648 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:12:47.658 -07 000000448 INF: FPGA: Recv YRDPOS 141368
17-03-17 22:12:47.658 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 22:12:47.658 -07 000000561 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:12:47.658 -07 000000561 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-17 22:12:47.658 -07 000000561 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 382 ms, distance = 0.838 mm, average velocity = 2.192 mm/sec
17-03-17 22:12:48.608 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:12:48.608 -07 000000618 INF: FPGA: Recv YRDPOS 141368
17-03-17 22:12:48.618 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:48.618 -07 000000561 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:12:48.638 -07 000000561 INF: Y Motor: After move to 69.042610, error = -0.015266, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:12:48.638 -07 000000561 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:12:48.638 -07 000000561 INF: Y Motor: Moved to 69.0273 after 2112 ms (table move)
17-03-17 22:12:48.638 -07 000000486 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137015 mm (DAC = 29931)
17-03-17 22:12:48.638 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:48.648 -07 000000618 INF: FPGA: Recv ZSGSRD 30624
17-03-17 22:12:48.648 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-17 22:12:48.648 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:48.648 -07 000000424 INF: FPGA: Recv ZSGSRD 30618
17-03-17 22:12:48.658 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:12:48.658 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:48.658 -07 000000462 INF: FPGA: Recv ZSGSRD 30623
17-03-17 22:12:48.668 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:48.668 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:48.668 -07 000000424 INF: FPGA: Recv ZSGSRD 30617
17-03-17 22:12:48.678 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:48.678 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:48.678 -07 000000462 INF: FPGA: Recv ZSGSRD 30609
17-03-17 22:12:48.688 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:48.688 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:48.688 -07 000000561 INF: FPGA: Recv ZSGSRD 30618
17-03-17 22:12:48.698 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:48.698 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:48.698 -07 000000482 INF: FPGA: Recv ZSGSRD 30616
17-03-17 22:12:48.708 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:48.708 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:48.708 -07 000000448 INF: FPGA: Recv ZSGSRD 30612
17-03-17 22:12:48.718 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:48.718 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:48.718 -07 000000623 INF: FPGA: Recv ZSGSRD 30611
17-03-17 22:12:48.728 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:48.728 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:48.728 -07 000000618 INF: FPGA: Recv ZSGSRD 30622
17-03-17 22:12:48.738 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:48.738 -07 000000486 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:12:48.738 -07 000000482 INF: FPGA: Recv ZPIEZORD 26647
17-03-17 22:12:48.748 -07 000000486 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:48.748 -07 000000486 INF: Z Motor: Piezo is near 36.9 V (nominally 0 to 100 V), expect near 45.7 V, since DAC is at 4.567 V. Piezo Error = -8.7 V.
17-03-17 22:12:48.748 -07 000000486 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.0 um, Read 10 ADC samples: Avg = 30617 (-136.2 uncal um), Error = 0.8 uncal um, Median = 30618 (-136.2 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30609 (-136.2 uncal um), Max = 30624 (-136.3 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 22:12:48.748 -07 000000486 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30617, posNoise = 7, negNoise = 8
17-03-17 22:12:48.748 -07 000000486 INF: Z Motor: After move to -0.137015, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:12:48.748 -07 000000486 INF: Z Motor: Settle wait time = 2114 ms, measure time = 102 ms (allowed 150 ms), total time = 2216 ms
17-03-17 22:12:48.748 -07 000000486 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 22:12:48.798 -07 000000486 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2503 ms
17-03-17 22:12:48.798 -07 000000486 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:12:48.798 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:12:48.798 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:12:48.798 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:12:48.798 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:12:48.798 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:12:48.798 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:12:48.798 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 22:12:48.798 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:12:48.808 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 22:12:48.808 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:12:48.808 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 22:12:48.808 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 22:12:48.818 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:12:48.858 -07 000000482 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:12:49.058 -07 000000482 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:12:49.058 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:12:49.058 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:12:49.178 -07 000000486 INF: FPGA: Recv @CAMSNAP 284
17-03-17 22:12:49.178 -07 000000486 INF: FPGA: Recv CAMSNAP
17-03-17 22:12:49.178 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1422920864, 0x0, 559484976) start.
17-03-17 22:12:49.178 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 355 ms to get response, and 363 ms overall
17-03-17 22:12:49.298 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1422920864, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 22:12:49.298 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:12:49.298 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:12:49.298 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 234 ms.
17-03-17 22:12:49.378 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:12:49.378 -07 000000482 INF: Autofocus start
17-03-17 22:12:49.378 -07 000000482 INF: MeasureProfile start
17-03-17 22:12:49.378 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:12:49.388 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:12:49.388 -07 000000462 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:12:49.388 -07 000000482 INF: MeasureProfile done
17-03-17 22:12:49.388 -07 000000482 INF: X=0  Z correction [um]=-0.02394831
17-03-17 22:12:49.388 -07 000000482 INF: Autofocus finished
17-03-17 22:12:49.588 -07 000000627 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:12:49.588 -07 000000462 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 205 ms overall
17-03-17 22:12:49.588 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02734375, Z-position -0.13701345515543. ----------
17-03-17 22:12:49.598 -07 000000610 INF: Cycle	60	Tile	12	Exposure Settings		A	447	G	215	T	215	C	447
17-03-17 22:12:49.598 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28438, sync = True, waitForSettling = True)
17-03-17 22:12:49.598 -07 000000610 INF: Z Motor: Moving to -0.130181 mm, started at -0.137013 mm, distance = 6.83 um
17-03-17 22:12:49.598 -07 000000610 INF: FPGA: Xmit ZDACW 28438\n [Z Motor]
17-03-17 22:12:49.598 -07 000000448 INF: FPGA: Recv ZDACW
17-03-17 22:12:49.608 -07 000000610 INF: FPGA: 'ZDACW 28438' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:12:49.608 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:12:49.608 -07 000000618 INF: FPGA: Recv ZDACR 28438
17-03-17 22:12:49.618 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:49.618 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:12:49.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:49.768 -07 000000462 INF: FPGA: Recv ZSGSRD 29552
17-03-17 22:12:49.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:12:49.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:49.778 -07 000000424 INF: FPGA: Recv ZSGSRD 29553
17-03-17 22:12:49.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:49.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:49.788 -07 000000462 INF: FPGA: Recv ZSGSRD 29556
17-03-17 22:12:49.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:49.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:49.798 -07 000000561 INF: FPGA: Recv ZSGSRD 29550
17-03-17 22:12:49.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:49.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:49.808 -07 000000486 INF: FPGA: Recv ZSGSRD 29555
17-03-17 22:12:49.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:49.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:49.818 -07 000000486 INF: FPGA: Recv ZSGSRD 29562
17-03-17 22:12:49.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:49.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:49.828 -07 000000618 INF: FPGA: Recv ZSGSRD 29561
17-03-17 22:12:49.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:49.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:49.838 -07 000000486 INF: FPGA: Recv ZSGSRD 29551
17-03-17 22:12:49.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:49.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:49.848 -07 000000561 INF: FPGA: Recv ZSGSRD 29551
17-03-17 22:12:49.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:49.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:49.858 -07 000000561 INF: FPGA: Recv ZSGSRD 29555
17-03-17 22:12:49.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:49.868 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:12:49.868 -07 000000627 INF: FPGA: Recv ZPIEZORD 25242
17-03-17 22:12:49.878 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:49.878 -07 000000610 INF: Z Motor: Piezo is near 33.9 V (nominally 0 to 100 V), expect near 43.4 V, since DAC is at 4.339 V. Piezo Error = -9.5 V.
17-03-17 22:12:49.878 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.2 um, Read 10 ADC samples: Avg = 29555 (-129.4 uncal um), Error = 0.8 uncal um, Median = 29554 (-129.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29550 (-129.4 uncal um), Max = 29562 (-129.5 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 22:12:49.878 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29555, posNoise = 7, negNoise = 5
17-03-17 22:12:49.878 -07 000000610 INF: Z Motor: After move to -0.130181, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:12:49.878 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 22:12:49.878 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:12:49.878 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:12:49.878 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:12:49.878 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:12:49.878 -07 000000623 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:12:49.878 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:12:49.878 -07 000000448 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:12:49.878 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:12:49.878 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 22:12:49.878 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:12:49.878 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:12:49.878 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:12:49.888 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:12:49.888 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:12:49.888 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:12:49.888 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:12:49.898 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 22:12:49.898 -07 000000623 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 22:12:49.898 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 22:12:49.898 -07 000000448 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 22:12:49.898 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 447 447 215 215 28615 150\n [Camera]
17-03-17 22:12:50.098 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:12:50.548 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 639
17-03-17 22:12:50.548 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 639
17-03-17 22:12:50.548 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:12:50.548 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 639
17-03-17 22:12:50.548 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 639
17-03-17 22:12:50.548 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:12:50.548 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:12:50.548 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 22:12:50.548 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:12:50.548 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 583729424, 0x0, 391868352) start.
17-03-17 22:12:50.738 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28615 832
17-03-17 22:12:50.888 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP turning grn on 982
17-03-17 22:12:50.948 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 583729424, 0x0, 391868352) end. Duration was 395 ms.
17-03-17 22:12:50.948 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 22:12:50.948 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:12:50.948 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 398 ms.
17-03-17 22:12:50.948 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 22:12:50.948 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:12:50.948 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:12:50.948 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 22:12:50.948 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:12:50.958 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-17 22:12:51.108 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1200
17-03-17 22:12:51.108 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1200
17-03-17 22:12:51.108 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:12:51.108 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:12:51.108 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 1479623496, 0x0, 391868352) start.
17-03-17 22:12:51.108 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1200
17-03-17 22:12:51.108 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1200
17-03-17 22:12:51.108 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:12:51.108 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:12:51.108 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-17 22:12:51.298 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP 1389
17-03-17 22:12:51.298 -07 000000561 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:12:51.298 -07 000000610 INF: FPGA: 'CAMDBLSNAP 447 447 215 215 28615 150' command took 2 ms to send, 1391 ms to get response, and 1398 ms overall
17-03-17 22:12:51.298 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 22:12:51.298 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.02734375, Z-Position -0.13019094186088. ------
17-03-17 22:12:51.298 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:12:51.298 -07 000000448 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.13665 mm
17-03-17 22:12:51.298 -07 000000448 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:12:51.508 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 397 ms.
17-03-17 22:12:51.508 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 22:12:51.508 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:12:51.508 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 1479623496, 0x0, 391868352) end. Duration was 401 ms.
17-03-17 22:12:51.508 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 22:12:51.508 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:12:51.508 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:12:51.518 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 22:12:51.518 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-17 22:12:51.518 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-17 22:12:51.528 -07 000000623 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-17 22:12:51.528 -07 000000623 INF: Y Motor: Moving to 69.8726 mm, started at 69.0273 mm, delta = 0.8453 mm
17-03-17 22:12:51.528 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:12:51.528 -07 000000627 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:12:51.528 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 225 ms to get response, and 226 ms overall
17-03-17 22:12:51.528 -07 000000627 INF: Z Motor: Entering MoveAbsStepped (DAC = 29851, sync = True, waitForSettling = False)
17-03-17 22:12:51.528 -07 000000627 INF: Z Motor: Moving to -0.136649 mm, started at -0.130191 mm, distance = -6.46 um
17-03-17 22:12:51.538 -07 000000627 INF: FPGA: Xmit ZDACW 29851\n [Z Motor]
17-03-17 22:12:51.548 -07 000000561 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:12:52.228 -07 000000459 INF: FPGA: Recv YRDPOS 141369
17-03-17 22:12:52.228 -07 000000459 INF: FPGA: Recv ZDACW
17-03-17 22:12:52.228 -07 000000459 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:12:52.228 -07 000000459 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:12:52.228 -07 000000561 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 670 ms to get response, and 694 ms overall
17-03-17 22:12:52.228 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 59. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=945, R2=968, Total=1913. Warn if over 250 bubbles per interval.
17-03-17 22:12:52.228 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 690 ms to get response, and 696 ms overall
17-03-17 22:12:52.228 -07 000000623 INF: Y Motor: Encoder = 141369 = motor step 110444.5 = 69.0278 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:12:52.228 -07 000000627 INF: FPGA: 'ZDACW 29851' command took 0 ms to send, 680 ms to get response, and 693 ms overall
17-03-17 22:12:52.228 -07 000000627 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:12:52.228 -07 000000459 INF: FPGA: Recv ZDACR 29851
17-03-17 22:12:52.228 -07 000000623 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:12:52.228 -07 000000623 INF: Y Motor: Moving 1352 steps-31
17-03-17 22:12:52.238 -07 000000627 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:12:52.238 -07 000000627 INF: Z Motor: MoveAbsStepped took 703 ms (did NOT wait for settling yet))
17-03-17 22:12:52.238 -07 000000623 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:12:52.608 -07 000000561 INF: FPGA: Recv YMVTILE
17-03-17 22:12:52.608 -07 000000623 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 381 ms overall
17-03-17 22:12:52.658 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:12:52.658 -07 000000502 INF: FPGA: Recv YRDPOS 143080
17-03-17 22:12:52.668 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:52.668 -07 000000623 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:12:52.668 -07 000000623 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-17 22:12:52.668 -07 000000623 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 381 ms, distance = 0.845 mm, average velocity = 2.219 mm/sec
17-03-17 22:12:52.898 -07 000000627 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 60, FrontChillerTemperature: 4.033041,
17-03-17 22:12:53.618 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:12:53.618 -07 000000561 INF: FPGA: Recv YRDPOS 143080
17-03-17 22:12:53.628 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:12:53.628 -07 000000623 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:12:53.648 -07 000000623 INF: Y Motor: After move to 69.872612, error = -0.009331, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:12:53.648 -07 000000623 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:12:53.648 -07 000000623 INF: Y Motor: Moved to 69.8633 after 2122 ms (table move)
17-03-17 22:12:53.648 -07 000000448 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136649 mm (DAC = 29851)
17-03-17 22:12:53.648 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:53.658 -07 000000458 INF: FPGA: Recv ZSGSRD 30568
17-03-17 22:12:53.658 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-17 22:12:53.658 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:53.658 -07 000000012 INF: FPGA: Recv ZSGSRD 30557
17-03-17 22:12:53.668 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:12:53.668 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:53.668 -07 000000502 INF: FPGA: Recv ZSGSRD 30566
17-03-17 22:12:53.678 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:53.678 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:53.678 -07 000000623 INF: FPGA: Recv ZSGSRD 30563
17-03-17 22:12:53.688 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:53.688 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:53.688 -07 000000458 INF: FPGA: Recv ZSGSRD 30561
17-03-17 22:12:53.698 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:53.698 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:53.698 -07 000000627 INF: FPGA: Recv ZSGSRD 30558
17-03-17 22:12:53.708 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:53.708 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:53.708 -07 000000459 INF: FPGA: Recv ZSGSRD 30559
17-03-17 22:12:53.718 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:53.718 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:53.718 -07 000000561 INF: FPGA: Recv ZSGSRD 30559
17-03-17 22:12:53.728 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:53.728 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:53.728 -07 000000502 INF: FPGA: Recv ZSGSRD 30561
17-03-17 22:12:53.738 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:53.738 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:53.738 -07 000000458 INF: FPGA: Recv ZSGSRD 30566
17-03-17 22:12:53.748 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:53.748 -07 000000448 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:12:53.748 -07 000000459 INF: FPGA: Recv ZPIEZORD 26591
17-03-17 22:12:53.758 -07 000000448 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:53.758 -07 000000448 INF: Z Motor: Piezo is near 36.8 V (nominally 0 to 100 V), expect near 45.5 V, since DAC is at 4.555 V. Piezo Error = -8.7 V.
17-03-17 22:12:53.758 -07 000000448 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.6 um, Read 10 ADC samples: Avg = 30562 (-135.9 uncal um), Error = 0.8 uncal um, Median = 30561 (-135.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30557 (-135.8 uncal um), Max = 30568 (-135.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 22:12:53.758 -07 000000448 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30562, posNoise = 6, negNoise = 5
17-03-17 22:12:53.758 -07 000000448 INF: Z Motor: After move to -0.136649, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:12:53.758 -07 000000448 INF: Z Motor: Settle wait time = 2122 ms, measure time = 101 ms (allowed 150 ms), total time = 2223 ms
17-03-17 22:12:53.758 -07 000000448 INF: Z Motor: Waiting extra 49 ms after reading position to reach expected total of 150 ms
17-03-17 22:12:53.808 -07 000000448 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2501 ms
17-03-17 22:12:53.808 -07 000000448 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:12:53.808 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:12:53.808 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:12:53.808 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:12:53.808 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:12:53.808 -07 000000012 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:12:53.808 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:12:53.818 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:12:53.818 -07 000000012 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:12:53.818 -07 000000012 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:12:53.818 -07 000000012 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:12:53.828 -07 000000012 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 22:12:53.828 -07 000000012 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 22:12:53.828 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:12:53.868 -07 000000012 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:12:54.068 -07 000000459 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:12:54.068 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:12:54.078 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:12:54.078 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1433191640, 0x0, 559484976) start.
17-03-17 22:12:54.108 -07 000000561 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:12:54.108 -07 000000448 INF: FPGA: Recv CAMSNAP
17-03-17 22:12:54.108 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 284 ms overall
17-03-17 22:12:54.198 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1433191640, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 22:12:54.198 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:12:54.198 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:12:54.198 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 22:12:54.308 -07 000000459 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:12:54.308 -07 000000561 INF: Autofocus start
17-03-17 22:12:54.308 -07 000000561 INF: MeasureProfile start
17-03-17 22:12:54.308 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:12:54.318 -07 000000459 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:12:54.318 -07 000000459 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:12:54.318 -07 000000561 INF: MeasureProfile done
17-03-17 22:12:54.318 -07 000000561 INF: X=-4  Z correction [um]=-0.02287426
17-03-17 22:12:54.318 -07 000000561 INF: Autofocus finished
17-03-17 22:12:54.518 -07 000000623 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:12:54.518 -07 000000459 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:12:54.518 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86328125, Z-position -0.136660123487633. ----------
17-03-17 22:12:54.518 -07 000000610 INF: Cycle	60	Tile	13	Exposure Settings		A	447	G	215	T	215	C	447
17-03-17 22:12:54.528 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28359, sync = True, waitForSettling = True)
17-03-17 22:12:54.528 -07 000000610 INF: Z Motor: Moving to -0.129819 mm, started at -0.136660 mm, distance = 6.84 um
17-03-17 22:12:54.528 -07 000000610 INF: FPGA: Xmit ZDACW 28359\n [Z Motor]
17-03-17 22:12:54.528 -07 000000448 INF: FPGA: Recv ZDACW
17-03-17 22:12:54.538 -07 000000610 INF: FPGA: 'ZDACW 28359' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:54.538 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:12:54.538 -07 000000627 INF: FPGA: Recv ZDACR 28359
17-03-17 22:12:54.548 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:54.548 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:12:54.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:54.698 -07 000000502 INF: FPGA: Recv ZSGSRD 29498
17-03-17 22:12:54.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:54.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:54.708 -07 000000012 INF: FPGA: Recv ZSGSRD 29502
17-03-17 22:12:54.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:54.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:54.718 -07 000000448 INF: FPGA: Recv ZSGSRD 29499
17-03-17 22:12:54.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:54.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:54.728 -07 000000458 INF: FPGA: Recv ZSGSRD 29493
17-03-17 22:12:54.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:54.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:54.738 -07 000000623 INF: FPGA: Recv ZSGSRD 29497
17-03-17 22:12:54.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:54.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:54.748 -07 000000561 INF: FPGA: Recv ZSGSRD 29501
17-03-17 22:12:54.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:54.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:54.758 -07 000000458 INF: FPGA: Recv ZSGSRD 29501
17-03-17 22:12:54.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:12:54.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:54.768 -07 000000448 INF: FPGA: Recv ZSGSRD 29495
17-03-17 22:12:54.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:54.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:54.778 -07 000000448 INF: FPGA: Recv ZSGSRD 29495
17-03-17 22:12:54.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:54.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:54.788 -07 000000458 INF: FPGA: Recv ZSGSRD 29497
17-03-17 22:12:54.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:54.798 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:12:54.798 -07 000000561 INF: FPGA: Recv ZPIEZORD 25139
17-03-17 22:12:54.808 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:54.808 -07 000000610 INF: Z Motor: Piezo is near 33.7 V (nominally 0 to 100 V), expect near 43.3 V, since DAC is at 4.327 V. Piezo Error = -9.6 V.
17-03-17 22:12:54.808 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.8 um, Read 10 ADC samples: Avg = 29498 (-129.0 uncal um), Error = 0.8 uncal um, Median = 29498 (-129.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29493 (-129.0 uncal um), Max = 29502 (-129.1 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 22:12:54.808 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29498, posNoise = 4, negNoise = 5
17-03-17 22:12:54.808 -07 000000610 INF: Z Motor: After move to -0.129819, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:12:54.808 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 22:12:54.808 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:12:54.808 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:12:54.808 -07 000000448 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:12:54.808 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:12:54.808 -07 000000623 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:12:54.808 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:12:54.808 -07 000000458 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:12:54.808 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:12:54.808 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:12:54.808 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:12:54.808 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:12:54.808 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:12:54.808 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:12:54.808 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:12:54.818 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:12:54.818 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:12:54.828 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 22:12:54.828 -07 000000623 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 22:12:54.828 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 22:12:54.828 -07 000000458 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 22:12:54.838 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 447 447 215 215 28535 150\n [Camera]
17-03-17 22:12:55.038 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:12:55.488 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 639
17-03-17 22:12:55.488 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 639
17-03-17 22:12:55.488 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:12:55.488 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:12:55.488 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start.
17-03-17 22:12:55.488 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 639
17-03-17 22:12:55.488 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 639
17-03-17 22:12:55.488 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:12:55.488 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:12:55.488 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) start.
17-03-17 22:12:55.678 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28535 832
17-03-17 22:12:55.818 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP turning grn on 982
17-03-17 22:12:55.888 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 400 ms.
17-03-17 22:12:55.888 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 22:12:55.888 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:12:55.888 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) end. Duration was 400 ms.
17-03-17 22:12:55.888 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 22:12:55.888 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:12:55.888 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:12:55.888 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 22:12:55.888 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:12:55.898 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-17 22:12:56.038 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1197
17-03-17 22:12:56.038 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1197
17-03-17 22:12:56.038 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:12:56.148 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1197
17-03-17 22:12:56.148 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1197
17-03-17 22:12:56.158 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:12:56.158 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:12:56.158 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 22:12:56.158 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:12:56.158 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 22:12:56.228 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP 1390
17-03-17 22:12:56.228 -07 000000458 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:12:56.228 -07 000000610 INF: FPGA: 'CAMDBLSNAP 447 447 215 215 28535 150' command took 2 ms to send, 1387 ms to get response, and 1397 ms overall
17-03-17 22:12:56.228 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 22:12:56.228 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.86328125, Z-Position -0.1298247617688. ------
17-03-17 22:12:56.238 -07 000000458 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:12:56.238 -07 000000448 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.13619 mm
17-03-17 22:12:56.238 -07 000000448 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:12:56.548 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 390 ms.
17-03-17 22:12:56.548 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 22:12:56.548 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:12:56.548 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:12:56.548 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 390 ms.
17-03-17 22:12:56.548 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 22:12:56.548 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:12:56.548 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:12:56.548 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 513 ms.
17-03-17 22:12:56.558 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 22:12:56.568 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:12:56.568 -07 000000458 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 322 ms to get response, and 329 ms overall
17-03-17 22:12:56.568 -07 000000623 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-17 22:12:56.568 -07 000000623 INF: Y Motor: Moving to 70.7026 mm, started at 69.8633 mm, delta = 0.8393 mm
17-03-17 22:12:56.568 -07 000000458 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:12:56.568 -07 000000561 INF: Z Motor: Entering MoveAbsStepped (DAC = 29751, sync = True, waitForSettling = False)
17-03-17 22:12:56.568 -07 000000561 INF: Z Motor: Moving to -0.136191 mm, started at -0.129825 mm, distance = -6.37 um
17-03-17 22:12:56.578 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:12:56.588 -07 000000561 INF: FPGA: Xmit ZDACW 29751\n [Z Motor]
17-03-17 22:12:57.228 -07 000000551 INF: FPGA: Recv YRDPOS 143081
17-03-17 22:12:57.228 -07 000000551 INF: FPGA: Recv ZDACW
17-03-17 22:12:57.228 -07 000000551 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:12:57.228 -07 000000551 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:12:57.228 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 640 ms to get response, and 657 ms overall
17-03-17 22:12:57.228 -07 000000458 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 650 ms to get response, and 657 ms overall
17-03-17 22:12:57.228 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 59. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=945, R2=968, Total=1913. Warn if over 250 bubbles per interval.
17-03-17 22:12:57.228 -07 000000561 INF: FPGA: 'ZDACW 29751' command took 0 ms to send, 630 ms to get response, and 657 ms overall
17-03-17 22:12:57.228 -07 000000561 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:12:57.228 -07 000000623 INF: Y Motor: Encoder = 143081 = motor step 111782.0 = 69.8638 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:12:57.228 -07 000000551 INF: FPGA: Recv ZDACR 29751
17-03-17 22:12:57.228 -07 000000623 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:12:57.228 -07 000000623 INF: Y Motor: Moving 1342 steps-19
17-03-17 22:12:57.238 -07 000000561 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:12:57.238 -07 000000623 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:12:57.238 -07 000000561 INF: Z Motor: MoveAbsStepped took 666 ms (did NOT wait for settling yet))
17-03-17 22:12:57.608 -07 000000438 INF: FPGA: Recv YMVTILE
17-03-17 22:12:57.608 -07 000000623 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 383 ms overall
17-03-17 22:12:57.658 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:12:57.658 -07 000000486 INF: FPGA: Recv YRDPOS 144770
17-03-17 22:12:57.668 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:12:57.668 -07 000000623 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:12:57.668 -07 000000623 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-17 22:12:57.668 -07 000000623 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 383 ms, distance = 0.839 mm, average velocity = 2.191 mm/sec
17-03-17 22:12:58.268 -07 000000551 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 60, FrontChillerTemperature: 3.988112,
17-03-17 22:12:58.618 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:12:58.618 -07 000000627 INF: FPGA: Recv YRDPOS 144771
17-03-17 22:12:58.628 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:58.628 -07 000000623 INF: Y Motor: Encoder = 144771 = motor step 113102.3 = 70.6890 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:12:58.648 -07 000000623 INF: Y Motor: After move to 70.702606, error = -0.013641, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:12:58.648 -07 000000623 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 22:12:58.648 -07 000000623 INF: Y Motor: Moved to 70.6890 after 2082 ms (table move)
17-03-17 22:12:58.658 -07 000000448 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136191 mm (DAC = 29751)
17-03-17 22:12:58.658 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:58.658 -07 000000486 INF: FPGA: Recv ZSGSRD 30487
17-03-17 22:12:58.668 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:58.668 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:58.668 -07 000000618 INF: FPGA: Recv ZSGSRD 30495
17-03-17 22:12:58.678 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:58.678 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:58.678 -07 000000462 INF: FPGA: Recv ZSGSRD 30491
17-03-17 22:12:58.688 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:58.688 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:58.688 -07 000000623 INF: FPGA: Recv ZSGSRD 30492
17-03-17 22:12:58.698 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:58.698 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:58.698 -07 000000551 INF: FPGA: Recv ZSGSRD 30491
17-03-17 22:12:58.708 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:12:58.708 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:58.708 -07 000000618 INF: FPGA: Recv ZSGSRD 30485
17-03-17 22:12:58.718 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:58.718 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:58.718 -07 000000551 INF: FPGA: Recv ZSGSRD 30490
17-03-17 22:12:58.728 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:58.728 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:58.728 -07 000000458 INF: FPGA: Recv ZSGSRD 30489
17-03-17 22:12:58.738 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:58.738 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:58.738 -07 000000627 INF: FPGA: Recv ZSGSRD 30487
17-03-17 22:12:58.748 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:58.748 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:58.748 -07 000000551 INF: FPGA: Recv ZSGSRD 30499
17-03-17 22:12:58.758 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:58.758 -07 000000448 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:12:58.758 -07 000000458 INF: FPGA: Recv ZPIEZORD 26522
17-03-17 22:12:58.768 -07 000000448 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:58.768 -07 000000448 INF: Z Motor: Piezo is near 36.7 V (nominally 0 to 100 V), expect near 45.4 V, since DAC is at 4.540 V. Piezo Error = -8.7 V.
17-03-17 22:12:58.768 -07 000000448 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.2 um, Read 10 ADC samples: Avg = 30491 (-135.4 uncal um), Error = 0.8 uncal um, Median = 30490 (-135.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30485 (-135.4 uncal um), Max = 30499 (-135.5 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 22:12:58.768 -07 000000448 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30491, posNoise = 8, negNoise = 6
17-03-17 22:12:58.768 -07 000000448 INF: Z Motor: After move to -0.136191, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:12:58.768 -07 000000448 INF: Z Motor: Settle wait time = 2086 ms, measure time = 111 ms (allowed 150 ms), total time = 2197 ms
17-03-17 22:12:58.768 -07 000000448 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-17 22:12:58.808 -07 000000448 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2566 ms
17-03-17 22:12:58.808 -07 000000448 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:12:58.808 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:12:58.808 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:12:58.808 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:12:58.808 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:12:58.808 -07 000000486 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:12:58.808 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:12:58.808 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 22:12:58.808 -07 000000486 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:12:58.818 -07 000000486 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:12:58.818 -07 000000486 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:12:58.818 -07 000000486 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 22:12:58.818 -07 000000486 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 22:12:58.828 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:12:58.868 -07 000000459 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:12:59.068 -07 000000462 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:12:59.068 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:12:59.068 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:12:59.078 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1422920864, 0x0, 559484976) start.
17-03-17 22:12:59.108 -07 000000478 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:12:59.108 -07 000000438 INF: FPGA: Recv CAMSNAP
17-03-17 22:12:59.108 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 285 ms overall
17-03-17 22:12:59.188 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1422920864, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 22:12:59.188 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:12:59.188 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 22:12:59.188 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 22:12:59.208 -07 000000459 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:12:59.208 -07 000000618 INF: Autofocus start
17-03-17 22:12:59.208 -07 000000618 INF: MeasureProfile start
17-03-17 22:12:59.208 -07 000000482 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:12:59.218 -07 000000459 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:12:59.218 -07 000000459 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:12:59.218 -07 000000618 INF: MeasureProfile done
17-03-17 22:12:59.218 -07 000000618 INF: X=16  Z correction [um]=0.0530179
17-03-17 22:12:59.218 -07 000000618 INF: Autofocus finished
17-03-17 22:12:59.418 -07 000000561 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:12:59.418 -07 000000459 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:12:59.418 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.68896484375, Z-position -0.136204004425568. ----------
17-03-17 22:12:59.428 -07 000000610 INF: Cycle	60	Tile	14	Exposure Settings		A	447	G	215	T	215	C	447
17-03-17 22:12:59.428 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28276, sync = True, waitForSettling = True)
17-03-17 22:12:59.428 -07 000000610 INF: Z Motor: Moving to -0.129439 mm, started at -0.136204 mm, distance = 6.76 um
17-03-17 22:12:59.428 -07 000000610 INF: FPGA: Xmit ZDACW 28276\n [Z Motor]
17-03-17 22:12:59.428 -07 000000478 INF: FPGA: Recv ZDACW
17-03-17 22:12:59.438 -07 000000610 INF: FPGA: 'ZDACW 28276' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:12:59.438 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:12:59.438 -07 000000462 INF: FPGA: Recv ZDACR 28276
17-03-17 22:12:59.448 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:59.448 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:12:59.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:59.598 -07 000000438 INF: FPGA: Recv ZSGSRD 29438
17-03-17 22:12:59.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:12:59.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:59.608 -07 000000551 INF: FPGA: Recv ZSGSRD 29444
17-03-17 22:12:59.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:59.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:59.618 -07 000000623 INF: FPGA: Recv ZSGSRD 29441
17-03-17 22:12:59.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:59.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:59.628 -07 000000424 INF: FPGA: Recv ZSGSRD 29433
17-03-17 22:12:59.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:59.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:59.638 -07 000000458 INF: FPGA: Recv ZSGSRD 29447
17-03-17 22:12:59.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:59.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:59.648 -07 000000458 INF: FPGA: Recv ZSGSRD 29441
17-03-17 22:12:59.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:59.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:59.658 -07 000000482 INF: FPGA: Recv ZSGSRD 29435
17-03-17 22:12:59.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:59.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:59.668 -07 000000478 INF: FPGA: Recv ZSGSRD 29440
17-03-17 22:12:59.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:59.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:59.678 -07 000000478 INF: FPGA: Recv ZSGSRD 29433
17-03-17 22:12:59.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:59.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:12:59.688 -07 000000458 INF: FPGA: Recv ZSGSRD 29442
17-03-17 22:12:59.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:59.698 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:12:59.698 -07 000000478 INF: FPGA: Recv ZPIEZORD 25101
17-03-17 22:12:59.708 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:12:59.708 -07 000000610 INF: Z Motor: Piezo is near 33.6 V (nominally 0 to 100 V), expect near 43.1 V, since DAC is at 4.315 V. Piezo Error = -9.5 V.
17-03-17 22:12:59.708 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.4 um, Read 10 ADC samples: Avg = 29439 (-128.7 uncal um), Error = 0.8 uncal um, Median = 29440 (-128.7 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 29433 (-128.6 uncal um), Max = 29447 (-128.7 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 22:12:59.708 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29439, posNoise = 8, negNoise = 6
17-03-17 22:12:59.708 -07 000000610 INF: Z Motor: After move to -0.129439, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:12:59.708 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 22:12:59.708 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:12:59.708 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:12:59.708 -07 000000458 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:12:59.708 -07 000000478 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:12:59.708 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:12:59.708 -07 000000482 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:12:59.708 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:12:59.708 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:12:59.708 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:12:59.708 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:12:59.708 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:12:59.708 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:12:59.718 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:12:59.718 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:12:59.718 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:12:59.718 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:12:59.728 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 22:12:59.728 -07 000000478 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 22:12:59.728 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 22:12:59.728 -07 000000482 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 22:12:59.738 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 447 447 215 215 28452 150\n [Camera]
17-03-17 22:12:59.938 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:13:00.378 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 639
17-03-17 22:13:00.378 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 639
17-03-17 22:13:00.378 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:13:00.378 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:13:00.488 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1479623496, 0x0, 391868352) start.
17-03-17 22:13:00.488 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 639
17-03-17 22:13:00.488 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 639
17-03-17 22:13:00.488 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:13:00.488 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:13:00.488 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-17 22:13:00.578 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28452 832
17-03-17 22:13:00.718 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP turning grn on 982
17-03-17 22:13:00.878 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 384 ms.
17-03-17 22:13:00.878 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-17 22:13:00.878 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:13:00.878 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:13:00.878 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1479623496, 0x0, 391868352) end. Duration was 498 ms.
17-03-17 22:13:00.878 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 499 ms.
17-03-17 22:13:00.878 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:13:00.888 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:13:00.888 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 503 ms.
17-03-17 22:13:00.888 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 22:13:00.938 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1197
17-03-17 22:13:00.938 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1197
17-03-17 22:13:00.938 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:13:00.938 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1197
17-03-17 22:13:00.938 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:13:00.938 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 22:13:00.938 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1197
17-03-17 22:13:00.938 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:13:00.938 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:13:00.938 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-17 22:13:01.128 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP 1389
17-03-17 22:13:01.128 -07 000000478 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:13:01.128 -07 000000610 INF: FPGA: 'CAMDBLSNAP 447 447 215 215 28452 150' command took 2 ms to send, 1387 ms to get response, and 1397 ms overall
17-03-17 22:13:01.128 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 22:13:01.128 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.68896484375, Z-Position -0.129445733252436. ------
17-03-17 22:13:01.138 -07 000000482 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.13620 mm
17-03-17 22:13:01.138 -07 000000482 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:13:01.138 -07 000000478 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:13:01.348 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 407 ms.
17-03-17 22:13:01.348 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-17 22:13:01.348 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:13:01.348 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 406 ms.
17-03-17 22:13:01.348 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-17 22:13:01.348 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:13:01.358 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:13:01.358 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 414 ms.
17-03-17 22:13:01.358 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:13:01.358 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 418 ms.
17-03-17 22:13:01.368 -07 000000424 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-17 22:13:01.368 -07 000000424 INF: Y Motor: Moving to 71.5326 mm, started at 70.6890 mm, delta = 0.8436 mm
17-03-17 22:13:01.368 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:13:01.368 -07 000000458 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:13:01.368 -07 000000458 INF: FPGA: Recv YRDPOS 144771
17-03-17 22:13:01.368 -07 000000478 INF: FPGA: 'FOCMRRCUR 80' command took 2 ms to send, 227 ms to get response, and 233 ms overall
17-03-17 22:13:01.368 -07 000000458 INF: Z Motor: Entering MoveAbsStepped (DAC = 29752, sync = True, waitForSettling = False)
17-03-17 22:13:01.368 -07 000000458 INF: Z Motor: Moving to -0.136196 mm, started at -0.129446 mm, distance = -6.75 um
17-03-17 22:13:01.378 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:13:01.378 -07 000000458 INF: FPGA: Xmit ZDACW 29752\n [Z Motor]
17-03-17 22:13:01.378 -07 000000424 INF: Y Motor: Encoder = 144771 = motor step 113102.3 = 70.6890 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:13:01.378 -07 000000424 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:13:01.378 -07 000000424 INF: Y Motor: Moving 1350 steps-29
17-03-17 22:13:01.388 -07 000000478 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:13:01.398 -07 000000424 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:13:02.228 -07 000000502 INF: FPGA: Recv ZDACW
17-03-17 22:13:02.228 -07 000000502 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:13:02.228 -07 000000458 INF: FPGA: 'ZDACW 29752' command took 0 ms to send, 840 ms to get response, and 851 ms overall
17-03-17 22:13:02.228 -07 000000502 INF: FPGA: Recv YMVTILE
17-03-17 22:13:02.228 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:13:02.228 -07 000000478 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 830 ms to get response, and 852 ms overall
17-03-17 22:13:02.228 -07 000000458 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:13:02.228 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 59. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=945, R2=968, Total=1913. Warn if over 250 bubbles per interval.
17-03-17 22:13:02.228 -07 000000424 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 821 ms to get response, and 850 ms overall
17-03-17 22:13:02.228 -07 000000502 INF: FPGA: Recv ZDACR 29752
17-03-17 22:13:02.238 -07 000000458 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:13:02.238 -07 000000458 INF: Z Motor: MoveAbsStepped took 861 ms (did NOT wait for settling yet))
17-03-17 22:13:02.268 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:13:02.268 -07 000000478 INF: FPGA: Recv YRDPOS 146471
17-03-17 22:13:02.278 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 22:13:02.278 -07 000000424 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:13:02.278 -07 000000424 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 22:13:02.278 -07 000000424 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 851 ms, distance = 0.844 mm, average velocity = 0.991 mm/sec
17-03-17 22:13:03.228 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:13:03.228 -07 000000458 INF: FPGA: Recv YRDPOS 146471
17-03-17 22:13:03.238 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:13:03.238 -07 000000424 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:13:03.258 -07 000000424 INF: Y Motor: After move to 71.532608, error = -0.013565, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:13:03.258 -07 000000424 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:13:03.258 -07 000000424 INF: Y Motor: Moved to 71.5190 after 1893 ms (table move)
17-03-17 22:13:03.268 -07 000000482 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136196 mm (DAC = 29752)
17-03-17 22:13:03.268 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:13:03.268 -07 000000623 INF: FPGA: Recv ZSGSRD 30494
17-03-17 22:13:03.278 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:13:03.278 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:13:03.278 -07 000000424 INF: FPGA: Recv ZSGSRD 30491
17-03-17 22:13:03.288 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:13:03.288 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:13:03.288 -07 000000502 INF: FPGA: Recv ZSGSRD 30493
17-03-17 22:13:03.298 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:13:03.298 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:13:03.298 -07 000000424 INF: FPGA: Recv ZSGSRD 30488
17-03-17 22:13:03.308 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:13:03.308 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:13:03.308 -07 000000458 INF: FPGA: Recv ZSGSRD 30484
17-03-17 22:13:03.318 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:13:03.328 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:13:03.328 -07 000000012 INF: FPGA: Recv ZSGSRD 30494
17-03-17 22:13:03.338 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:13:03.338 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:13:03.338 -07 000000458 INF: FPGA: Recv ZSGSRD 30483
17-03-17 22:13:03.348 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:13:03.348 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:13:03.348 -07 000000502 INF: FPGA: Recv ZSGSRD 30492
17-03-17 22:13:03.358 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:13:03.358 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:13:03.358 -07 000000424 INF: FPGA: Recv ZSGSRD 30495
17-03-17 22:13:03.368 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:13:03.368 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:13:03.368 -07 000000551 INF: FPGA: Recv ZSGSRD 30497
17-03-17 22:13:03.378 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:13:03.378 -07 000000482 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:13:03.378 -07 000000012 INF: FPGA: Recv ZPIEZORD 26564
17-03-17 22:13:03.388 -07 000000482 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:13:03.388 -07 000000482 INF: Z Motor: Piezo is near 36.7 V (nominally 0 to 100 V), expect near 45.4 V, since DAC is at 4.540 V. Piezo Error = -8.7 V.
17-03-17 22:13:03.388 -07 000000482 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.2 um, Read 10 ADC samples: Avg = 30491 (-135.4 uncal um), Error = 0.8 uncal um, Median = 30492 (-135.4 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30483 (-135.4 uncal um), Max = 30497 (-135.4 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 22:13:03.388 -07 000000482 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30491, posNoise = 6, negNoise = 8
17-03-17 22:13:03.388 -07 000000482 INF: Z Motor: After move to -0.136196, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:13:03.388 -07 000000482 INF: Z Motor: Settle wait time = 1891 ms, measure time = 120 ms (allowed 150 ms), total time = 2011 ms
17-03-17 22:13:03.388 -07 000000482 INF: Z Motor: Waiting extra 30 ms after reading position to reach expected total of 150 ms
17-03-17 22:13:03.418 -07 000000482 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2276 ms
17-03-17 22:13:03.418 -07 000000482 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:13:03.418 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:13:03.418 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:13:03.418 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:13:03.418 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:13:03.418 -07 000000012 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:13:03.418 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:13:03.428 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 22:13:03.428 -07 000000012 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:13:03.428 -07 000000012 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 22:13:03.428 -07 000000012 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:13:03.438 -07 000000012 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 22:13:03.438 -07 000000012 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 22:13:03.438 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:13:03.478 -07 000000478 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:13:03.638 -07 000000458 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 60, FrontChillerTemperature: 4.003063,
17-03-17 22:13:03.678 -07 000000424 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:13:03.678 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:13:03.678 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:13:03.688 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610341080, 0x0, 559484976) start.
17-03-17 22:13:03.718 -07 000000502 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:13:03.718 -07 000000482 INF: FPGA: Recv CAMSNAP
17-03-17 22:13:03.718 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 285 ms overall
17-03-17 22:13:03.798 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610341080, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 22:13:03.798 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:13:03.798 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 22:13:03.798 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 22:13:03.818 -07 000000012 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:13:03.818 -07 000000551 INF: Autofocus start
17-03-17 22:13:03.818 -07 000000551 INF: MeasureProfile start
17-03-17 22:13:03.818 -07 000000478 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:13:03.828 -07 000000012 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 22:13:03.828 -07 000000012 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:13:03.828 -07 000000551 INF: MeasureProfile done
17-03-17 22:13:03.828 -07 000000551 INF: X=0  Z correction [um]=-0.02394831
17-03-17 22:13:03.828 -07 000000551 INF: Autofocus finished
17-03-17 22:13:04.028 -07 000000482 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:13:04.028 -07 000000012 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:13:04.028 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.51904296875, Z-position -0.136204004425568. ----------
17-03-17 22:13:04.028 -07 000000610 INF: Cycle	60	Tile	15	Exposure Settings		A	447	G	215	T	215	C	447
17-03-17 22:13:04.038 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28260, sync = True, waitForSettling = True)
17-03-17 22:13:04.038 -07 000000610 INF: Z Motor: Moving to -0.129366 mm, started at -0.136204 mm, distance = 6.84 um
17-03-17 22:13:04.038 -07 000000610 INF: FPGA: Xmit ZDACW 28260\n [Z Motor]
17-03-17 22:13:04.038 -07 000000502 INF: FPGA: Recv ZDACW
17-03-17 22:13:04.048 -07 000000610 INF: FPGA: 'ZDACW 28260' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:13:04.048 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:13:04.048 -07 000000482 INF: FPGA: Recv ZDACR 28260
17-03-17 22:13:04.058 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:13:04.058 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:13:04.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:13:04.208 -07 000000424 INF: FPGA: Recv ZSGSRD 29431
17-03-17 22:13:04.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:13:04.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:13:04.218 -07 000000478 INF: FPGA: Recv ZSGSRD 29426
17-03-17 22:13:04.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:13:04.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:13:04.228 -07 000000551 INF: FPGA: Recv ZSGSRD 29424
17-03-17 22:13:04.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:13:04.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:13:04.238 -07 000000424 INF: FPGA: Recv ZSGSRD 29429
17-03-17 22:13:04.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:13:04.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:13:04.248 -07 000000551 INF: FPGA: Recv ZSGSRD 29430
17-03-17 22:13:04.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:13:04.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:13:04.258 -07 000000478 INF: FPGA: Recv ZSGSRD 29428
17-03-17 22:13:04.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:13:04.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:13:04.268 -07 000000458 INF: FPGA: Recv ZSGSRD 29428
17-03-17 22:13:04.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:13:04.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:13:04.278 -07 000000459 INF: FPGA: Recv ZSGSRD 29426
17-03-17 22:13:04.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:13:04.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:13:04.288 -07 000000623 INF: FPGA: Recv ZSGSRD 29428
17-03-17 22:13:04.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:13:04.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:13:04.298 -07 000000458 INF: FPGA: Recv ZSGSRD 29429
17-03-17 22:13:04.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:13:04.308 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:13:04.308 -07 000000458 INF: FPGA: Recv ZPIEZORD 25115
17-03-17 22:13:04.318 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:13:04.318 -07 000000610 INF: Z Motor: Piezo is near 33.7 V (nominally 0 to 100 V), expect near 43.1 V, since DAC is at 4.312 V. Piezo Error = -9.5 V.
17-03-17 22:13:04.318 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.4 um, Read 10 ADC samples: Avg = 29428 (-128.6 uncal um), Error = 0.8 uncal um, Median = 29428 (-128.6 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 29424 (-128.6 uncal um), Max = 29431 (-128.6 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 22:13:04.318 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29428, posNoise = 3, negNoise = 4
17-03-17 22:13:04.318 -07 000000610 INF: Z Motor: After move to -0.129366, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:13:04.318 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 22:13:04.318 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:13:04.318 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:13:04.318 -07 000000458 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:13:04.318 -07 000000482 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:13:04.318 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:13:04.318 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:13:04.318 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:13:04.318 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:13:04.318 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:13:04.318 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:13:04.318 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:13:04.318 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:13:04.328 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 22:13:04.328 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:13:04.328 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 22:13:04.328 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:13:04.338 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 22:13:04.338 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 22:13:04.338 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 22:13:04.338 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 22:13:04.348 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 447 447 215 215 28437 150\n [Camera]
17-03-17 22:13:04.548 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:13:04.988 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 639
17-03-17 22:13:04.988 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 639
17-03-17 22:13:04.998 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 639
17-03-17 22:13:04.998 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 639
17-03-17 22:13:04.998 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:13:04.998 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:13:04.998 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start.
17-03-17 22:13:04.998 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:13:04.998 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:13:04.998 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) start.
17-03-17 22:13:05.188 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28437 832
17-03-17 22:13:05.328 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP turning grn on 982
17-03-17 22:13:05.378 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) end. Duration was 386 ms.
17-03-17 22:13:05.378 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 22:13:05.378 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:13:05.388 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:13:05.388 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 394 ms.
17-03-17 22:13:05.388 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 22:13:05.388 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:13:05.388 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 22:13:05.388 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:13:05.388 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 22:13:05.548 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1197
17-03-17 22:13:05.548 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1197
17-03-17 22:13:05.548 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:13:05.548 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:13:05.548 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 22:13:05.548 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1197
17-03-17 22:13:05.548 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1197
17-03-17 22:13:05.548 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:13:05.548 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:13:05.548 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 22:13:05.738 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP 1389
17-03-17 22:13:05.738 -07 000000012 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:13:05.738 -07 000000610 INF: FPGA: 'CAMDBLSNAP 447 447 215 215 28437 150' command took 2 ms to send, 1387 ms to get response, and 1397 ms overall
17-03-17 22:13:05.738 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 22:13:05.738 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.51904296875, Z-Position -0.129375066918876. ------
17-03-17 22:13:05.748 -07 000000482 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.13574 mm
17-03-17 22:13:05.748 -07 000000482 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:13:05.748 -07 000000458 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:13:05.748 -07 000000012 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-17 22:13:05.748 -07 000000012 INF: Y Motor: Moving to 72.3626 mm, started at 71.5190 mm, delta = 0.8436 mm
17-03-17 22:13:05.758 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:13:05.958 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 405 ms.
17-03-17 22:13:05.958 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 22:13:05.958 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:13:05.958 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 405 ms.
17-03-17 22:13:05.958 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-17 22:13:05.958 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:13:05.958 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:13:05.968 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 22:13:05.968 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 413 ms.
17-03-17 22:13:05.968 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-17 22:13:05.978 -07 000000424 INF: Z Motor: Entering MoveAbsStepped (DAC = 29653, sync = True, waitForSettling = False)
17-03-17 22:13:05.978 -07 000000424 INF: Z Motor: Moving to -0.135743 mm, started at -0.129375 mm, distance = -6.37 um
17-03-17 22:13:05.978 -07 000000424 INF: FPGA: Xmit ZDACW 29653\n [Z Motor]
17-03-17 22:13:05.978 -07 000000623 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:13:05.978 -07 000000623 INF: FPGA: Recv YRDPOS 146472
17-03-17 22:13:05.978 -07 000000458 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 225 ms to get response, and 229 ms overall
17-03-17 22:13:05.978 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 215 ms to get response, and 226 ms overall
17-03-17 22:13:05.978 -07 000000623 INF: FPGA: Recv ZDACW
17-03-17 22:13:05.978 -07 000000012 INF: Y Motor: Encoder = 146472 = motor step 114431.3 = 71.5195 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:13:05.978 -07 000000012 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:13:05.978 -07 000000012 INF: Y Motor: Moving 1349 steps-28
17-03-17 22:13:05.988 -07 000000424 INF: FPGA: 'ZDACW 29653' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:13:05.988 -07 000000012 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:13:05.998 -07 000000458 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:13:06.008 -07 000000424 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:13:06.008 -07 000000623 INF: FPGA: Recv ZDACR 29653
17-03-17 22:13:06.018 -07 000000424 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:13:06.018 -07 000000424 INF: Z Motor: MoveAbsStepped took 38 ms (did NOT wait for settling yet))
17-03-17 22:13:06.198 -07 000000424 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:13:06.198 -07 000000458 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 216 ms overall
17-03-17 22:13:06.358 -07 000000458 INF: FPGA: Recv YMVTILE
17-03-17 22:13:06.358 -07 000000012 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 378 ms overall
17-03-17 22:13:06.398 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:13:06.408 -07 000000623 INF: FPGA: Recv YRDPOS 148172
17-03-17 22:13:06.408 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:13:06.408 -07 000000012 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:13:06.408 -07 000000012 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-17 22:13:06.408 -07 000000012 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.844 mm, average velocity = 2.232 mm/sec
17-03-17 22:13:06.948 -07 000000458 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:13:06.948 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 59. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=945, R2=968, Total=1913. Warn if over 250 bubbles per interval.
17-03-17 22:13:07.358 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:13:07.358 -07 000000458 INF: FPGA: Recv YRDPOS 148172
17-03-17 22:13:07.368 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:13:07.368 -07 000000012 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:13:07.408 -07 000000012 INF: Y Motor: After move to 72.362610, error = -0.013000, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:13:07.408 -07 000000012 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:13:07.408 -07 000000012 INF: Y Motor: Moved to 72.3496 after 1659 ms (table move)
17-03-17 22:13:07.418 -07 000000482 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135743 mm (DAC = 29653)
17-03-17 22:13:07.418 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:13:07.418 -07 000000424 INF: FPGA: Recv ZSGSRD 30414
17-03-17 22:13:07.428 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:13:07.428 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:13:07.428 -07 000000012 INF: FPGA: Recv ZSGSRD 30417
17-03-17 22:13:07.438 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:13:07.438 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:13:07.438 -07 000000424 INF: FPGA: Recv ZSGSRD 30431
17-03-17 22:13:07.448 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:13:07.448 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:13:07.448 -07 000000012 INF: FPGA: Recv ZSGSRD 30418
17-03-17 22:13:07.458 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:13:07.458 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:13:07.458 -07 000000424 INF: FPGA: Recv ZSGSRD 30413
17-03-17 22:13:07.468 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:13:07.468 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:13:07.468 -07 000000627 INF: FPGA: Recv ZSGSRD 30419
17-03-17 22:13:07.478 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:13:07.478 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:13:07.478 -07 000000486 INF: FPGA: Recv ZSGSRD 30420
17-03-17 22:13:07.488 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:13:07.488 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:13:07.488 -07 000000623 INF: FPGA: Recv ZSGSRD 30417
17-03-17 22:13:07.498 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:13:07.498 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:13:07.498 -07 000000486 INF: FPGA: Recv ZSGSRD 30421
17-03-17 22:13:07.508 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:13:07.508 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:13:07.508 -07 000000623 INF: FPGA: Recv ZSGSRD 30419
17-03-17 22:13:07.518 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:13:07.518 -07 000000482 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:13:07.518 -07 000000486 INF: FPGA: Recv ZPIEZORD 26448
17-03-17 22:13:07.528 -07 000000482 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:13:07.528 -07 000000482 INF: Z Motor: Piezo is near 36.5 V (nominally 0 to 100 V), expect near 45.2 V, since DAC is at 4.525 V. Piezo Error = -8.7 V.
17-03-17 22:13:07.528 -07 000000482 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.7 um, Read 10 ADC samples: Avg = 30419 (-134.9 uncal um), Error = 0.8 uncal um, Median = 30418 (-134.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 30413 (-134.9 uncal um), Max = 30431 (-135.0 uncal um), Pos Noise = 12 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 22:13:07.528 -07 000000482 INF: Z Motor: ADC noise = 12, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30419, posNoise = 12, negNoise = 6
17-03-17 22:13:07.528 -07 000000482 INF: Z Motor: After move to -0.135743, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:13:07.528 -07 000000482 INF: Z Motor: Settle wait time = 1441 ms, measure time = 108 ms (allowed 150 ms), total time = 1549 ms
17-03-17 22:13:07.528 -07 000000482 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-17 22:13:07.578 -07 000000482 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1824 ms
17-03-17 22:13:07.578 -07 000000482 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:13:07.578 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:13:07.578 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:13:07.578 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:13:07.578 -07 000000623 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:13:07.578 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:13:07.578 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:13:07.578 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 22:13:07.578 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:13:07.588 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 22:13:07.588 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:13:07.598 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 15 ms.
17-03-17 22:13:07.598 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 20 ms.
17-03-17 22:13:07.608 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:13:07.648 -07 000000482 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:13:07.848 -07 000000012 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:13:07.848 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:13:07.848 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:13:07.848 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1422920864, 0x0, 559484976) start.
17-03-17 22:13:07.888 -07 000000623 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:13:07.888 -07 000000462 INF: FPGA: Recv CAMSNAP
17-03-17 22:13:07.888 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 284 ms overall
17-03-17 22:13:07.968 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1422920864, 0x0, 559484976) end. Duration was 119 ms.
17-03-17 22:13:07.968 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:13:07.968 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:13:07.968 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 122 ms.
17-03-17 22:13:07.988 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:13:07.988 -07 000000012 INF: Autofocus start
17-03-17 22:13:07.988 -07 000000012 INF: MeasureProfile start
17-03-17 22:13:07.988 -07 000000482 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:13:07.998 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:13:07.998 -07 000000462 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:13:07.998 -07 000000012 INF: MeasureProfile done
17-03-17 22:13:07.998 -07 000000012 INF: X=0  Z correction [um]=-0.02394831
17-03-17 22:13:07.998 -07 000000012 INF: Autofocus finished
17-03-17 22:13:08.198 -07 000000623 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:13:08.198 -07 000000462 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:13:08.198 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.349609375, Z-position -0.135741461151362. ----------
17-03-17 22:13:08.208 -07 000000610 INF: Cycle	60	Tile	16	Exposure Settings		A	447	G	215	T	215	C	447
17-03-17 22:13:08.208 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28160, sync = True, waitForSettling = True)
17-03-17 22:13:08.208 -07 000000610 INF: Z Motor: Moving to -0.128908 mm, started at -0.135741 mm, distance = 6.83 um
17-03-17 22:13:08.208 -07 000000610 INF: FPGA: Xmit ZDACW 28160\n [Z Motor]
17-03-17 22:13:08.208 -07 000000482 INF: FPGA: Recv ZDACW
17-03-17 22:13:08.218 -07 000000610 INF: FPGA: 'ZDACW 28160' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:13:08.218 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:13:08.218 -07 000000486 INF: FPGA: Recv ZDACR 28160
17-03-17 22:13:08.228 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:13:08.228 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:13:08.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:13:08.378 -07 000000462 INF: FPGA: Recv ZSGSRD 29352
17-03-17 22:13:08.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:13:08.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:13:08.388 -07 000000486 INF: FPGA: Recv ZSGSRD 29361
17-03-17 22:13:08.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:13:08.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:13:08.398 -07 000000623 INF: FPGA: Recv ZSGSRD 29352
17-03-17 22:13:08.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:13:08.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:13:08.408 -07 000000627 INF: FPGA: Recv ZSGSRD 29359
17-03-17 22:13:08.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:13:08.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:13:08.418 -07 000000623 INF: FPGA: Recv ZSGSRD 29359
17-03-17 22:13:08.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:13:08.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:13:08.428 -07 000000627 INF: FPGA: Recv ZSGSRD 29356
17-03-17 22:13:08.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:13:08.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:13:08.438 -07 000000623 INF: FPGA: Recv ZSGSRD 29358
17-03-17 22:13:08.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:13:08.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:13:08.448 -07 000000486 INF: FPGA: Recv ZSGSRD 29358
17-03-17 22:13:08.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:13:08.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:13:08.458 -07 000000424 INF: FPGA: Recv ZSGSRD 29358
17-03-17 22:13:08.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:13:08.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:13:08.468 -07 000000627 INF: FPGA: Recv ZSGSRD 29355
17-03-17 22:13:08.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:13:08.478 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:13:08.478 -07 000000424 INF: FPGA: Recv ZPIEZORD 25026
17-03-17 22:13:08.488 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:13:08.488 -07 000000610 INF: Z Motor: Piezo is near 33.5 V (nominally 0 to 100 V), expect near 43.0 V, since DAC is at 4.297 V. Piezo Error = -9.5 V.
17-03-17 22:13:08.488 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.9 um, Read 10 ADC samples: Avg = 29357 (-128.1 uncal um), Error = 0.8 uncal um, Median = 29358 (-128.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29352 (-128.1 uncal um), Max = 29361 (-128.2 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 22:13:08.488 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29357, posNoise = 4, negNoise = 5
17-03-17 22:13:08.488 -07 000000610 INF: Z Motor: After move to -0.128908, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:13:08.488 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 22:13:08.488 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:13:08.488 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:13:08.488 -07 000000486 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:13:08.488 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:13:08.488 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:13:08.488 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:13:08.488 -07 000000482 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:13:08.488 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:13:08.488 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:13:08.488 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:13:08.488 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:13:08.488 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:13:08.498 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 22:13:08.498 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:13:08.498 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:13:08.498 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:13:08.508 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 22:13:08.508 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 22:13:08.508 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 22:13:08.508 -07 000000482 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 22:13:08.518 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 447 447 215 215 28337 150\n [Camera]
17-03-17 22:13:08.718 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:13:09.008 -07 000000482 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 60, FrontChillerTemperature: 4.014009,
17-03-17 22:13:09.158 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 639
17-03-17 22:13:09.158 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 639
17-03-17 22:13:09.158 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:13:09.158 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:13:09.158 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-17 22:13:09.168 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 639
17-03-17 22:13:09.168 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 639
17-03-17 22:13:09.168 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:13:09.168 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:13:09.168 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 22:13:09.358 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28337 832
17-03-17 22:13:09.498 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP turning grn on 982
17-03-17 22:13:09.558 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 399 ms.
17-03-17 22:13:09.558 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 22:13:09.558 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:13:09.568 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:13:09.568 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 22:13:09.568 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 400 ms.
17-03-17 22:13:09.568 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 22:13:09.568 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:13:09.568 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:13:09.578 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-17 22:13:09.718 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1197
17-03-17 22:13:09.718 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1197
17-03-17 22:13:09.718 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:13:09.718 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:13:09.718 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start.
17-03-17 22:13:09.718 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1197
17-03-17 22:13:09.718 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1197
17-03-17 22:13:09.718 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:13:09.718 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:13:09.718 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) start.
17-03-17 22:13:09.908 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP 1390
17-03-17 22:13:09.908 -07 000000462 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:13:09.908 -07 000000610 INF: FPGA: 'CAMDBLSNAP 447 447 215 215 28337 150' command took 2 ms to send, 1387 ms to get response, and 1397 ms overall
17-03-17 22:13:09.908 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 22:13:09.908 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.349609375, Z-Position -0.128918947856811. ------
17-03-17 22:13:10.038 -07 000000627 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:13:10.038 -07 000000458 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.13546 mm
17-03-17 22:13:10.038 -07 000000458 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:13:10.038 -07 000000462 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-17 22:13:10.038 -07 000000462 INF: Y Motor: Moving to 73.1926 mm, started at 72.3496 mm, delta = 0.8430 mm
17-03-17 22:13:10.048 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:13:10.118 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 401 ms.
17-03-17 22:13:10.118 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 22:13:10.118 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:13:10.128 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) end. Duration was 402 ms.
17-03-17 22:13:10.128 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-17 22:13:10.128 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:13:10.128 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:13:10.128 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 22:13:10.128 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-17 22:13:10.138 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-17 22:13:10.138 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:13:10.138 -07 000000012 INF: FPGA: Recv YRDPOS 148173
17-03-17 22:13:10.138 -07 000000627 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 96 ms to get response, and 105 ms overall
17-03-17 22:13:10.138 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 86 ms to get response, and 102 ms overall
17-03-17 22:13:10.138 -07 000000462 INF: Y Motor: Encoder = 148173 = motor step 115760.2 = 72.3501 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:13:10.138 -07 000000627 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:13:10.138 -07 000000012 INF: Z Motor: Entering MoveAbsStepped (DAC = 29590, sync = True, waitForSettling = False)
17-03-17 22:13:10.138 -07 000000012 INF: Z Motor: Moving to -0.135454 mm, started at -0.128919 mm, distance = -6.54 um
17-03-17 22:13:10.148 -07 000000012 INF: FPGA: Xmit ZDACW 29590\n [Z Motor]
17-03-17 22:13:10.148 -07 000000482 INF: FPGA: Recv ZDACW
17-03-17 22:13:10.148 -07 000000462 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:13:10.148 -07 000000462 INF: Y Motor: Moving 1348 steps-27
17-03-17 22:13:10.158 -07 000000462 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:13:10.158 -07 000000012 INF: FPGA: 'ZDACW 29590' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 22:13:10.168 -07 000000012 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:13:10.168 -07 000000482 INF: FPGA: Recv ZDACR 29590
17-03-17 22:13:10.178 -07 000000012 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:13:10.178 -07 000000012 INF: Z Motor: MoveAbsStepped took 31 ms (did NOT wait for settling yet))
17-03-17 22:13:10.348 -07 000000482 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:13:10.348 -07 000000627 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 200 ms to get response, and 203 ms overall
17-03-17 22:13:10.528 -07 000000012 INF: FPGA: Recv YMVTILE
17-03-17 22:13:10.528 -07 000000462 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 382 ms overall
17-03-17 22:13:10.568 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:13:10.568 -07 000000012 INF: FPGA: Recv YRDPOS 149865
17-03-17 22:13:10.578 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:13:10.578 -07 000000462 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:13:10.578 -07 000000462 INF: Y Motor: Position error before settling (table move) = -33 encoder counts (-0.016 mm)
17-03-17 22:13:10.578 -07 000000462 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 383 ms, distance = 0.843 mm, average velocity = 2.201 mm/sec
17-03-17 22:13:11.528 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:13:11.528 -07 000000482 INF: FPGA: Recv YRDPOS 149865
17-03-17 22:13:11.538 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:13:11.538 -07 000000462 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:13:11.558 -07 000000462 INF: Y Motor: After move to 73.192604, error = -0.016335, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:13:11.558 -07 000000462 INF: Y Motor: Position error after settling (table move) = -33 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:13:11.558 -07 000000462 INF: Y Motor: Moved to 73.1763 after 1520 ms (table move)
17-03-17 22:13:11.558 -07 000000458 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135454 mm (DAC = 29590)
17-03-17 22:13:11.558 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:13:11.568 -07 000000482 INF: FPGA: Recv ZSGSRD 30382
17-03-17 22:13:11.568 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 22:13:11.568 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:13:11.568 -07 000000482 INF: FPGA: Recv ZSGSRD 30381
17-03-17 22:13:11.578 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:13:11.578 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:13:11.578 -07 000000627 INF: FPGA: Recv ZSGSRD 30365
17-03-17 22:13:11.588 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:13:11.588 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:13:11.588 -07 000000462 INF: FPGA: Recv ZSGSRD 30363
17-03-17 22:13:11.598 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:13:11.598 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:13:11.598 -07 000000627 INF: FPGA: Recv ZSGSRD 30380
17-03-17 22:13:11.608 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:13:11.608 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:13:11.608 -07 000000482 INF: FPGA: Recv ZSGSRD 30367
17-03-17 22:13:11.618 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:13:11.618 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:13:11.618 -07 000000012 INF: FPGA: Recv ZSGSRD 30377
17-03-17 22:13:11.628 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:13:11.628 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:13:11.628 -07 000000462 INF: FPGA: Recv ZSGSRD 30370
17-03-17 22:13:11.638 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:13:11.638 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:13:11.638 -07 000000482 INF: FPGA: Recv ZSGSRD 30372
17-03-17 22:13:11.648 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:13:11.648 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:13:11.648 -07 000000627 INF: FPGA: Recv ZSGSRD 30372
17-03-17 22:13:11.658 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:13:11.658 -07 000000458 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:13:11.658 -07 000000012 INF: FPGA: Recv ZPIEZORD 26384
17-03-17 22:13:11.668 -07 000000458 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:13:11.668 -07 000000458 INF: Z Motor: Piezo is near 36.4 V (nominally 0 to 100 V), expect near 45.2 V, since DAC is at 4.515 V. Piezo Error = -8.8 V.
17-03-17 22:13:11.668 -07 000000458 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.5 um, Read 10 ADC samples: Avg = 30373 (-134.7 uncal um), Error = 0.8 uncal um, Median = 30372 (-134.6 uncal um), StdDev = 7 (0.0 uncal um), Range = 19 (0.1 uncal um), Min = 30363 (-134.6 uncal um), Max = 30382 (-134.7 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-17 22:13:11.668 -07 000000458 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30373, posNoise = 9, negNoise = 10
17-03-17 22:13:11.668 -07 000000458 INF: Z Motor: After move to -0.135454, error = 0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:13:11.668 -07 000000458 INF: Z Motor: Settle wait time = 1419 ms, measure time = 102 ms (allowed 150 ms), total time = 1521 ms
17-03-17 22:13:11.668 -07 000000458 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 22:13:11.718 -07 000000458 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1678 ms
17-03-17 22:13:11.718 -07 000000458 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:13:11.718 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:13:11.718 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:13:11.718 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:13:11.718 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:13:11.718 -07 000000482 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:13:11.718 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:13:11.718 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 22:13:11.718 -07 000000482 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:13:11.728 -07 000000482 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:13:11.728 -07 000000482 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:13:11.728 -07 000000482 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 22:13:11.728 -07 000000482 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 22:13:11.738 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:13:11.778 -07 000000482 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:13:11.948 -07 000000448 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:13:11.948 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 59. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=945, R2=968, Total=1913. Warn if over 250 bubbles per interval.
17-03-17 22:13:11.978 -07 000000462 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:13:11.978 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:13:11.978 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:13:11.978 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 22:13:12.018 -07 000000462 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:13:12.018 -07 000000448 INF: FPGA: Recv CAMSNAP
17-03-17 22:13:12.018 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 285 ms overall
17-03-17 22:13:12.098 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 22:13:12.098 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:13:12.098 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:13:12.098 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 22:13:12.118 -07 000000627 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:13:12.118 -07 000000012 INF: Autofocus start
17-03-17 22:13:12.118 -07 000000012 INF: MeasureProfile start
17-03-17 22:13:12.118 -07 000000482 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:13:12.128 -07 000000627 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 22:13:12.128 -07 000000627 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:13:12.128 -07 000000012 INF: MeasureProfile done
17-03-17 22:13:12.128 -07 000000012 INF: X=13  Z correction [um]=0.03858674
17-03-17 22:13:12.128 -07 000000012 INF: Autofocus finished
17-03-17 22:13:12.328 -07 000000482 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:13:12.328 -07 000000627 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:13:12.328 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.17626953125, Z-position -0.135445947392841. ----------
17-03-17 22:13:12.328 -07 000000610 INF: Cycle	60	Tile	17	Exposure Settings		A	447	G	215	T	215	C	447
17-03-17 22:13:12.338 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28111, sync = True, waitForSettling = True)
17-03-17 22:13:12.338 -07 000000610 INF: Z Motor: Moving to -0.128684 mm, started at -0.135446 mm, distance = 6.76 um
17-03-17 22:13:12.338 -07 000000610 INF: FPGA: Xmit ZDACW 28111\n [Z Motor]
17-03-17 22:13:12.338 -07 000000438 INF: FPGA: Recv ZDACW
17-03-17 22:13:12.348 -07 000000610 INF: FPGA: 'ZDACW 28111' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:13:12.348 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:13:12.348 -07 000000462 INF: FPGA: Recv ZDACR 28111
17-03-17 22:13:12.358 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:13:12.358 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:13:12.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:13:12.508 -07 000000482 INF: FPGA: Recv ZSGSRD 29318
17-03-17 22:13:12.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:13:12.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:13:12.518 -07 000000458 INF: FPGA: Recv ZSGSRD 29322
17-03-17 22:13:12.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:13:12.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:13:12.528 -07 000000462 INF: FPGA: Recv ZSGSRD 29323
17-03-17 22:13:12.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:13:12.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:13:12.538 -07 000000561 INF: FPGA: Recv ZSGSRD 29322
17-03-17 22:13:12.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:13:12.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:13:12.548 -07 000000012 INF: FPGA: Recv ZSGSRD 29319
17-03-17 22:13:12.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:13:12.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:13:12.558 -07 000000438 INF: FPGA: Recv ZSGSRD 29320
17-03-17 22:13:12.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:13:12.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:13:12.568 -07 000000482 INF: FPGA: Recv ZSGSRD 29326
17-03-17 22:13:12.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:13:12.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:13:12.578 -07 000000561 INF: FPGA: Recv ZSGSRD 29324
17-03-17 22:13:12.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:13:12.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:13:12.588 -07 000000012 INF: FPGA: Recv ZSGSRD 29318
17-03-17 22:13:12.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:13:12.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:13:12.598 -07 000000627 INF: FPGA: Recv ZSGSRD 29316
17-03-17 22:13:12.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:13:12.608 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:13:12.608 -07 000000438 INF: FPGA: Recv ZPIEZORD 24997
17-03-17 22:13:12.618 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:13:12.618 -07 000000610 INF: Z Motor: Piezo is near 33.4 V (nominally 0 to 100 V), expect near 42.9 V, since DAC is at 4.289 V. Piezo Error = -9.5 V.
17-03-17 22:13:12.618 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.7 um, Read 10 ADC samples: Avg = 29321 (-127.9 uncal um), Error = 0.8 uncal um, Median = 29321 (-127.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29316 (-127.9 uncal um), Max = 29326 (-127.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 22:13:12.618 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29321, posNoise = 5, negNoise = 5
17-03-17 22:13:12.618 -07 000000610 INF: Z Motor: After move to -0.128684, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:13:12.618 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 22:13:12.618 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:13:12.618 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:13:12.618 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:13:12.618 -07 000000482 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:13:12.618 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:13:12.618 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:13:12.618 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:13:12.618 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:13:12.618 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:13:12.618 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:13:12.618 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:13:12.618 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:13:12.628 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:13:12.628 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:13:12.628 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:13:12.628 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:13:12.628 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 22:13:12.628 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 22:13:12.628 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 22:13:12.628 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 22:13:12.638 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 447 447 215 215 28288 150\n [Camera]
17-03-17 22:13:12.838 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:13:13.288 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 639
17-03-17 22:13:13.288 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 639
17-03-17 22:13:13.288 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:13:13.288 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 639
17-03-17 22:13:13.288 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 639
17-03-17 22:13:13.288 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:13:13.288 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:13:13.288 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-17 22:13:13.298 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:13:13.298 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-17 22:13:13.478 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28288 832
17-03-17 22:13:13.628 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP turning grn on 982
17-03-17 22:13:13.688 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 395 ms.
17-03-17 22:13:13.688 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 22:13:13.688 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:13:13.688 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:13:13.688 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-17 22:13:13.698 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 396 ms.
17-03-17 22:13:13.698 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 22:13:13.698 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:13:13.698 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:13:13.708 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-17 22:13:13.838 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1197
17-03-17 22:13:13.838 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1197
17-03-17 22:13:13.838 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:13:13.848 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1197
17-03-17 22:13:13.848 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1197
17-03-17 22:13:13.848 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:13:13.958 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:13:13.958 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 22:13:13.968 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:13:13.968 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) start.
17-03-17 22:13:14.028 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP 1389
17-03-17 22:13:14.038 -07 000000458 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:13:14.038 -07 000000610 INF: FPGA: 'CAMDBLSNAP 447 447 215 215 28288 150' command took 2 ms to send, 1390 ms to get response, and 1396 ms overall
17-03-17 22:13:14.038 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 22:13:14.038 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.17626953125, Z-Position -0.128687676219708. ------
17-03-17 22:13:14.038 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:13:14.038 -07 000000462 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.13500 mm
17-03-17 22:13:14.048 -07 000000462 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:13:14.048 -07 000000627 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:13:14.048 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 4 ms to get response, and 7 ms overall
17-03-17 22:13:14.048 -07 000000561 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:13:14.048 -07 000000012 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-17 22:13:14.048 -07 000000012 INF: Y Motor: Moving to 74.0226 mm, started at 73.1763 mm, delta = 0.8463 mm
17-03-17 22:13:14.048 -07 000000627 INF: Z Motor: Entering MoveAbsStepped (DAC = 29490, sync = True, waitForSettling = False)
17-03-17 22:13:14.048 -07 000000627 INF: Z Motor: Moving to -0.134997 mm, started at -0.128688 mm, distance = -6.31 um
17-03-17 22:13:14.068 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:13:14.068 -07 000000551 INF: FPGA: Recv YRDPOS 149865
17-03-17 22:13:14.078 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-17 22:13:14.078 -07 000000012 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:13:14.078 -07 000000012 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:13:14.078 -07 000000012 INF: Y Motor: Moving 1354 steps-33
17-03-17 22:13:14.078 -07 000000627 INF: FPGA: Xmit ZDACW 29490\n [Z Motor]
17-03-17 22:13:14.078 -07 000000502 INF: FPGA: Recv ZDACW
17-03-17 22:13:14.088 -07 000000627 INF: FPGA: 'ZDACW 29490' command took 1 ms to send, 0 ms to get response, and 33 ms overall
17-03-17 22:13:14.088 -07 000000627 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:13:14.088 -07 000000458 INF: FPGA: Recv ZDACR 29490
17-03-17 22:13:14.098 -07 000000012 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:13:14.098 -07 000000627 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:13:14.098 -07 000000627 INF: Z Motor: MoveAbsStepped took 43 ms (did NOT wait for settling yet))
17-03-17 22:13:14.248 -07 000000551 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:13:14.248 -07 000000561 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 197 ms to get response, and 202 ms overall
17-03-17 22:13:14.348 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 381 ms.
17-03-17 22:13:14.348 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-17 22:13:14.348 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:13:14.348 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:13:14.348 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) end. Duration was 387 ms.
17-03-17 22:13:14.348 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 22:13:14.348 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:13:14.358 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 508 ms.
17-03-17 22:13:14.358 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:13:14.358 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 512 ms.
17-03-17 22:13:14.378 -07 000000627 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 60, FrontChillerTemperature: 3.970374,
17-03-17 22:13:14.468 -07 000000502 INF: FPGA: Recv YMVTILE
17-03-17 22:13:14.468 -07 000000012 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 22:13:14.508 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:13:14.508 -07 000000502 INF: FPGA: Recv YRDPOS 151569
17-03-17 22:13:14.518 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:13:14.518 -07 000000012 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:13:14.518 -07 000000012 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-17 22:13:14.518 -07 000000012 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.846 mm, average velocity = 2.132 mm/sec
17-03-17 22:13:15.468 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:13:15.468 -07 000000561 INF: FPGA: Recv YRDPOS 151569
17-03-17 22:13:15.478 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:13:15.478 -07 000000012 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:13:15.488 -07 000000012 INF: Y Motor: After move to 74.022606, error = -0.014305, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:13:15.488 -07 000000012 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:13:15.488 -07 000000012 INF: Y Motor: Moved to 74.0083 after 1442 ms (table move)
17-03-17 22:13:15.498 -07 000000462 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134997 mm (DAC = 29490)
17-03-17 22:13:15.498 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:13:15.498 -07 000000618 INF: FPGA: Recv ZSGSRD 30305
17-03-17 22:13:15.508 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:13:15.508 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:13:15.508 -07 000000012 INF: FPGA: Recv ZSGSRD 30306
17-03-17 22:13:15.518 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:13:15.518 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:13:15.518 -07 000000502 INF: FPGA: Recv ZSGSRD 30310
17-03-17 22:13:15.528 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:13:15.528 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:13:15.528 -07 000000012 INF: FPGA: Recv ZSGSRD 30308
17-03-17 22:13:15.538 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:13:15.538 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:13:15.538 -07 000000618 INF: FPGA: Recv ZSGSRD 30301
17-03-17 22:13:15.548 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:13:15.548 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:13:15.548 -07 000000561 INF: FPGA: Recv ZSGSRD 30306
17-03-17 22:13:15.558 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:13:15.558 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:13:15.558 -07 000000618 INF: FPGA: Recv ZSGSRD 30304
17-03-17 22:13:15.568 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:13:15.568 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:13:15.568 -07 000000618 INF: FPGA: Recv ZSGSRD 30305
17-03-17 22:13:15.578 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:13:15.578 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:13:15.578 -07 000000012 INF: FPGA: Recv ZSGSRD 30302
17-03-17 22:13:15.588 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:13:15.588 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:13:15.588 -07 000000618 INF: FPGA: Recv ZSGSRD 30299
17-03-17 22:13:15.598 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:13:15.598 -07 000000462 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:13:15.598 -07 000000502 INF: FPGA: Recv ZPIEZORD 26337
17-03-17 22:13:15.608 -07 000000462 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:13:15.608 -07 000000462 INF: Z Motor: Piezo is near 36.3 V (nominally 0 to 100 V), expect near 45.0 V, since DAC is at 4.500 V. Piezo Error = -8.7 V.
17-03-17 22:13:15.608 -07 000000462 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.0 um, Read 10 ADC samples: Avg = 30305 (-134.2 uncal um), Error = 0.8 uncal um, Median = 30305 (-134.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30299 (-134.2 uncal um), Max = 30310 (-134.3 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 22:13:15.608 -07 000000462 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30305, posNoise = 5, negNoise = 6
17-03-17 22:13:15.608 -07 000000462 INF: Z Motor: After move to -0.134997, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:13:15.608 -07 000000462 INF: Z Motor: Settle wait time = 1445 ms, measure time = 109 ms (allowed 150 ms), total time = 1554 ms
17-03-17 22:13:15.608 -07 000000462 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-17 22:13:15.658 -07 000000462 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1612 ms
17-03-17 22:13:15.658 -07 000000462 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:13:15.658 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:13:15.658 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:13:15.658 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:13:15.658 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:13:15.658 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:13:15.658 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:13:15.658 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 22:13:15.658 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:13:15.668 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:13:15.668 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:13:15.668 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 22:13:15.668 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 22:13:15.678 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:13:15.718 -07 000000618 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:13:15.918 -07 000000486 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:13:15.918 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:13:15.918 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:13:15.918 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 606469960, 0x0, 559484976) start.
17-03-17 22:13:15.958 -07 000000462 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:13:15.958 -07 000000012 INF: FPGA: Recv CAMSNAP
17-03-17 22:13:15.958 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 275 ms to get response, and 284 ms overall
17-03-17 22:13:16.038 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 606469960, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 22:13:16.038 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:13:16.038 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:13:16.038 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-17 22:13:16.058 -07 000000486 INF: Autofocus start
17-03-17 22:13:16.058 -07 000000486 INF: MeasureProfile start
17-03-17 22:13:16.058 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:13:16.058 -07 000000459 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:13:16.068 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:13:16.068 -07 000000502 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:13:16.068 -07 000000486 INF: MeasureProfile done
17-03-17 22:13:16.068 -07 000000486 INF: X=16  Z correction [um]=0.0530179
17-03-17 22:13:16.068 -07 000000486 INF: Autofocus finished
17-03-17 22:13:16.268 -07 000000012 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:13:16.268 -07 000000502 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:13:16.268 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.00830078125, Z-position -0.135009100967201. ----------
17-03-17 22:13:16.268 -07 000000610 INF: Cycle	60	Tile	18	Exposure Settings		A	447	G	215	T	215	C	447
17-03-17 22:13:16.278 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28014, sync = True, waitForSettling = True)
17-03-17 22:13:16.278 -07 000000610 INF: Z Motor: Moving to -0.128240 mm, started at -0.135009 mm, distance = 6.77 um
17-03-17 22:13:16.278 -07 000000610 INF: FPGA: Xmit ZDACW 28014\n [Z Motor]
17-03-17 22:13:16.278 -07 000000012 INF: FPGA: Recv ZDACW
17-03-17 22:13:16.288 -07 000000610 INF: FPGA: 'ZDACW 28014' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:13:16.288 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:13:16.288 -07 000000486 INF: FPGA: Recv ZDACR 28014
17-03-17 22:13:16.298 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:13:16.298 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:13:16.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:13:16.448 -07 000000012 INF: FPGA: Recv ZSGSRD 29252
17-03-17 22:13:16.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:13:16.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:13:16.458 -07 000000623 INF: FPGA: Recv ZSGSRD 29259
17-03-17 22:13:16.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:13:16.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:13:16.468 -07 000000623 INF: FPGA: Recv ZSGSRD 29250
17-03-17 22:13:16.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:13:16.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:13:16.478 -07 000000012 INF: FPGA: Recv ZSGSRD 29247
17-03-17 22:13:16.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:13:16.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:13:16.488 -07 000000623 INF: FPGA: Recv ZSGSRD 29253
17-03-17 22:13:16.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:13:16.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:13:16.498 -07 000000623 INF: FPGA: Recv ZSGSRD 29253
17-03-17 22:13:16.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:13:16.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:13:16.508 -07 000000623 INF: FPGA: Recv ZSGSRD 29247
17-03-17 22:13:16.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:13:16.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:13:16.518 -07 000000623 INF: FPGA: Recv ZSGSRD 29251
17-03-17 22:13:16.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:13:16.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:13:16.528 -07 000000462 INF: FPGA: Recv ZSGSRD 29255
17-03-17 22:13:16.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:13:16.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:13:16.538 -07 000000623 INF: FPGA: Recv ZSGSRD 29250
17-03-17 22:13:16.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:13:16.548 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:13:16.548 -07 000000623 INF: FPGA: Recv ZPIEZORD 24952
17-03-17 22:13:16.558 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:13:16.558 -07 000000610 INF: Z Motor: Piezo is near 33.3 V (nominally 0 to 100 V), expect near 42.7 V, since DAC is at 4.275 V. Piezo Error = -9.4 V.
17-03-17 22:13:16.558 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.2 um, Read 10 ADC samples: Avg = 29252 (-127.5 uncal um), Error = 0.8 uncal um, Median = 29252 (-127.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29247 (-127.4 uncal um), Max = 29259 (-127.5 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 22:13:16.558 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29252, posNoise = 7, negNoise = 5
17-03-17 22:13:16.558 -07 000000610 INF: Z Motor: After move to -0.128240, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:13:16.558 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 22:13:16.558 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:13:16.558 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:13:16.558 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:13:16.558 -07 000000486 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:13:16.558 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:13:16.558 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:13:16.558 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:13:16.558 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:13:16.558 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-17 22:13:16.558 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 22:13:16.558 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:13:16.558 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:13:16.568 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 22:13:16.568 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:13:16.568 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:13:16.568 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:13:16.568 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 22:13:16.568 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 22:13:16.578 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 22:13:16.578 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 22:13:16.578 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 447 447 215 215 28191 150\n [Camera]
17-03-17 22:13:16.778 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:13:16.948 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:13:16.948 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 59. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=945, R2=968, Total=1913. Warn if over 250 bubbles per interval.
17-03-17 22:13:17.228 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 639
17-03-17 22:13:17.228 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 639
17-03-17 22:13:17.228 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 639
17-03-17 22:13:17.228 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 639
17-03-17 22:13:17.228 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:13:17.228 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:13:17.238 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:13:17.238 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-17 22:13:17.238 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:13:17.238 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-17 22:13:17.418 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28191 832
17-03-17 22:13:17.568 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning grn on 982
17-03-17 22:13:17.618 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 22:13:17.618 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 22:13:17.618 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:13:17.618 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:13:17.618 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 22:13:17.618 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 22:13:17.618 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:13:17.618 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:13:17.618 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 22:13:17.628 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 22:13:17.778 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1197
17-03-17 22:13:17.778 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1197
17-03-17 22:13:17.788 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:13:17.788 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1197
17-03-17 22:13:17.788 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1197
17-03-17 22:13:17.788 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:13:17.788 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 22:13:17.788 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:13:17.788 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:13:17.788 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 1479623496, 0x0, 418435064) start.
17-03-17 22:13:17.978 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP 1389
17-03-17 22:13:17.978 -07 000000618 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:13:17.978 -07 000000610 INF: FPGA: 'CAMDBLSNAP 447 447 215 215 28191 150' command took 2 ms to send, 1391 ms to get response, and 1397 ms overall
17-03-17 22:13:17.978 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 22:13:17.978 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.00830078125, Z-Position -0.128244405581927. ------
17-03-17 22:13:17.978 -07 000000482 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:13:17.978 -07 000000462 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.13470 mm
17-03-17 22:13:17.978 -07 000000462 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:13:17.978 -07 000000459 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-17 22:13:17.978 -07 000000012 INF: Z Motor: Entering MoveAbsStepped (DAC = 29426, sync = True, waitForSettling = False)
17-03-17 22:13:17.978 -07 000000012 INF: Z Motor: Moving to -0.134704 mm, started at -0.128244 mm, distance = -6.46 um
17-03-17 22:13:17.978 -07 000000627 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:13:17.978 -07 000000459 INF: Y Motor: Moving to 74.8526 mm, started at 74.0083 mm, delta = 0.8443 mm
17-03-17 22:13:17.988 -07 000000482 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 22:13:17.988 -07 000000012 INF: FPGA: Xmit ZDACW 29426\n [Z Motor]
17-03-17 22:13:17.988 -07 000000627 INF: FPGA: Recv ZDACW
17-03-17 22:13:17.998 -07 000000482 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:13:17.998 -07 000000012 INF: FPGA: 'ZDACW 29426' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 22:13:18.008 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:13:18.008 -07 000000623 INF: FPGA: Recv YRDPOS 151570
17-03-17 22:13:18.018 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-17 22:13:18.018 -07 000000459 INF: Y Motor: Encoder = 151570 = motor step 118414.1 = 74.0088 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:13:18.018 -07 000000012 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:13:18.018 -07 000000502 INF: FPGA: Recv ZDACR 29426
17-03-17 22:13:18.018 -07 000000459 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:13:18.018 -07 000000459 INF: Y Motor: Moving 1350 steps-29
17-03-17 22:13:18.028 -07 000000012 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:13:18.028 -07 000000012 INF: Z Motor: MoveAbsStepped took 41 ms (did NOT wait for settling yet))
17-03-17 22:13:18.028 -07 000000459 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:13:18.188 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 405 ms.
17-03-17 22:13:18.188 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 22:13:18.188 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:13:18.188 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 1479623496, 0x0, 418435064) end. Duration was 404 ms.
17-03-17 22:13:18.188 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-17 22:13:18.188 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:13:18.198 -07 000000623 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:13:18.198 -07 000000482 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 212 ms overall
17-03-17 22:13:18.198 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 22:13:18.198 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 22:13:18.198 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 413 ms.
17-03-17 22:13:18.208 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 418 ms.
17-03-17 22:13:18.398 -07 000000502 INF: FPGA: Recv YMVTILE
17-03-17 22:13:18.398 -07 000000459 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 383 ms overall
17-03-17 22:13:18.428 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:13:18.428 -07 000000618 INF: FPGA: Recv YRDPOS 153257
17-03-17 22:13:18.438 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:13:18.438 -07 000000459 INF: Y Motor: Encoder = 153257 = motor step 119732.0 = 74.8325 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:13:18.438 -07 000000459 INF: Y Motor: Position error before settling (table move) = -41 encoder counts (-0.020 mm)
17-03-17 22:13:18.438 -07 000000459 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 383 ms, distance = 0.844 mm, average velocity = 2.204 mm/sec
17-03-17 22:13:19.388 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:13:19.388 -07 000000012 INF: FPGA: Recv YRDPOS 153257
17-03-17 22:13:19.398 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:13:19.398 -07 000000459 INF: Y Motor: Encoder = 153257 = motor step 119732.0 = 74.8325 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:13:19.408 -07 000000459 INF: Y Motor: After move to 74.852608, error = -0.020088, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:13:19.408 -07 000000459 INF: Y Motor: Position error after settling (table move) = -41 encoder counts (-0.020 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:13:19.408 -07 000000459 INF: Y Motor: Moved to 74.8325 after 1428 ms (table move)
17-03-17 22:13:19.418 -07 000000462 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134704 mm (DAC = 29426)
17-03-17 22:13:19.418 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:13:19.418 -07 000000458 INF: FPGA: Recv ZSGSRD 30260
17-03-17 22:13:19.428 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:13:19.438 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:13:19.438 -07 000000502 INF: FPGA: Recv ZSGSRD 30258
17-03-17 22:13:19.448 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:13:19.448 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:13:19.448 -07 000000627 INF: FPGA: Recv ZSGSRD 30252
17-03-17 22:13:19.458 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:13:19.458 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:13:19.458 -07 000000627 INF: FPGA: Recv ZSGSRD 30256
17-03-17 22:13:19.468 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:13:19.468 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:13:19.468 -07 000000618 INF: FPGA: Recv ZSGSRD 30265
17-03-17 22:13:19.478 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:13:19.478 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:13:19.478 -07 000000561 INF: FPGA: Recv ZSGSRD 30265
17-03-17 22:13:19.488 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:13:19.488 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:13:19.488 -07 000000478 INF: FPGA: Recv ZSGSRD 30246
17-03-17 22:13:19.498 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:13:19.498 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:13:19.498 -07 000000627 INF: FPGA: Recv ZSGSRD 30252
17-03-17 22:13:19.508 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:13:19.508 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:13:19.508 -07 000000618 INF: FPGA: Recv ZSGSRD 30252
17-03-17 22:13:19.518 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:13:19.518 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:13:19.518 -07 000000561 INF: FPGA: Recv ZSGSRD 30258
17-03-17 22:13:19.528 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:13:19.528 -07 000000462 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:13:19.528 -07 000000478 INF: FPGA: Recv ZPIEZORD 26277
17-03-17 22:13:19.538 -07 000000462 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:13:19.538 -07 000000462 INF: Z Motor: Piezo is near 36.1 V (nominally 0 to 100 V), expect near 44.9 V, since DAC is at 4.490 V. Piezo Error = -8.8 V.
17-03-17 22:13:19.538 -07 000000462 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.7 um, Read 10 ADC samples: Avg = 30256 (-133.9 uncal um), Error = 0.8 uncal um, Median = 30257 (-133.9 uncal um), StdDev = 6 (0.0 uncal um), Range = 19 (0.1 uncal um), Min = 30246 (-133.8 uncal um), Max = 30265 (-134.0 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-17 22:13:19.538 -07 000000462 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30256, posNoise = 9, negNoise = 10
17-03-17 22:13:19.538 -07 000000462 INF: Z Motor: After move to -0.134704, error = 0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:13:19.538 -07 000000462 INF: Z Motor: Settle wait time = 1433 ms, measure time = 118 ms (allowed 150 ms), total time = 1551 ms
17-03-17 22:13:19.538 -07 000000462 INF: Z Motor: Waiting extra 32 ms after reading position to reach expected total of 150 ms
17-03-17 22:13:19.578 -07 000000462 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1594 ms
17-03-17 22:13:19.578 -07 000000462 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:13:19.578 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:13:19.578 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:13:19.578 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:13:19.578 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:13:19.578 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:13:19.578 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:13:19.578 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:13:19.578 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:13:19.588 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 22:13:19.588 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:13:19.598 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 22:13:19.598 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 22:13:19.598 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:13:19.648 -07 000000561 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:13:19.758 -07 000000478 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 60, FrontChillerTemperature: 3.985358,
17-03-17 22:13:19.848 -07 000000462 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:13:19.848 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:13:19.848 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:13:19.848 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 22:13:19.888 -07 000000618 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:13:19.888 -07 000000618 INF: FPGA: Recv CAMSNAP
17-03-17 22:13:19.888 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 285 ms overall
17-03-17 22:13:19.978 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 22:13:19.978 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:13:19.978 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:13:19.978 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 22:13:19.988 -07 000000627 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:13:19.988 -07 000000462 INF: Autofocus start
17-03-17 22:13:19.988 -07 000000462 INF: MeasureProfile start
17-03-17 22:13:19.988 -07 000000478 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:13:19.998 -07 000000627 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:13:19.998 -07 000000627 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:13:19.998 -07 000000462 INF: MeasureProfile done
17-03-17 22:13:19.998 -07 000000462 INF: X=-1  Z correction [um]=-0.008270801
17-03-17 22:13:19.998 -07 000000462 INF: Autofocus finished
17-03-17 22:13:20.198 -07 000000462 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:13:20.198 -07 000000627 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 205 ms overall
17-03-17 22:13:20.198 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83251953125, Z-position -0.134694314572255. ----------
17-03-17 22:13:20.208 -07 000000610 INF: Cycle	60	Tile	19	Exposure Settings		A	447	G	215	T	215	C	447
17-03-17 22:13:20.208 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27937, sync = True, waitForSettling = True)
17-03-17 22:13:20.208 -07 000000610 INF: Z Motor: Moving to -0.127887 mm, started at -0.134694 mm, distance = 6.81 um
17-03-17 22:13:20.208 -07 000000610 INF: FPGA: Xmit ZDACW 27937\n [Z Motor]
17-03-17 22:13:20.208 -07 000000424 INF: FPGA: Recv ZDACW
17-03-17 22:13:20.218 -07 000000610 INF: FPGA: 'ZDACW 27937' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:13:20.218 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:13:20.218 -07 000000618 INF: FPGA: Recv ZDACR 27937
17-03-17 22:13:20.228 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:13:20.228 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:13:20.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:13:20.378 -07 000000478 INF: FPGA: Recv ZSGSRD 29198
17-03-17 22:13:20.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:13:20.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:13:20.388 -07 000000561 INF: FPGA: Recv ZSGSRD 29191
17-03-17 22:13:20.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:13:20.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:13:20.398 -07 000000551 INF: FPGA: Recv ZSGSRD 29195
17-03-17 22:13:20.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:13:20.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:13:20.408 -07 000000561 INF: FPGA: Recv ZSGSRD 29196
17-03-17 22:13:20.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:13:20.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:13:20.418 -07 000000551 INF: FPGA: Recv ZSGSRD 29202
17-03-17 22:13:20.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:13:20.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:13:20.428 -07 000000618 INF: FPGA: Recv ZSGSRD 29198
17-03-17 22:13:20.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:13:20.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:13:20.438 -07 000000551 INF: FPGA: Recv ZSGSRD 29192
17-03-17 22:13:20.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:13:20.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:13:20.448 -07 000000448 INF: FPGA: Recv ZSGSRD 29195
17-03-17 22:13:20.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:13:20.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:13:20.458 -07 000000448 INF: FPGA: Recv ZSGSRD 29200
17-03-17 22:13:20.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:13:20.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:13:20.468 -07 000000424 INF: FPGA: Recv ZSGSRD 29198
17-03-17 22:13:20.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:13:20.478 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:13:20.478 -07 000000627 INF: FPGA: Recv ZPIEZORD 24887
17-03-17 22:13:20.488 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:13:20.488 -07 000000610 INF: Z Motor: Piezo is near 33.2 V (nominally 0 to 100 V), expect near 42.6 V, since DAC is at 4.263 V. Piezo Error = -9.5 V.
17-03-17 22:13:20.488 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.9 um, Read 10 ADC samples: Avg = 29196 (-127.1 uncal um), Error = 0.8 uncal um, Median = 29197 (-127.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29191 (-127.1 uncal um), Max = 29202 (-127.1 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 22:13:20.488 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29196, posNoise = 6, negNoise = 5
17-03-17 22:13:20.488 -07 000000610 INF: Z Motor: After move to -0.127887, error = 0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:13:20.488 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 22:13:20.488 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:13:20.488 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:13:20.488 -07 000000448 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:13:20.488 -07 000000478 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:13:20.488 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:13:20.488 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:13:20.488 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:13:20.488 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:13:20.488 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:13:20.488 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 22:13:20.488 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:13:20.488 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:13:20.498 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:13:20.498 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:13:20.498 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:13:20.498 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:13:20.508 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 22:13:20.508 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 22:13:20.508 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 22:13:20.508 -07 000000478 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 22:13:20.508 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 447 447 215 215 28114 150\n [Camera]
17-03-17 22:13:20.708 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:13:21.158 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 639
17-03-17 22:13:21.158 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 639
17-03-17 22:13:21.158 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:13:21.158 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:13:21.158 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start.
17-03-17 22:13:21.158 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 639
17-03-17 22:13:21.158 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 639
17-03-17 22:13:21.158 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:13:21.158 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:13:21.158 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) start.
17-03-17 22:13:21.348 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28114 832
17-03-17 22:13:21.498 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning grn on 982
17-03-17 22:13:21.538 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 384 ms.
17-03-17 22:13:21.538 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 22:13:21.538 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:13:21.538 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) end. Duration was 383 ms.
17-03-17 22:13:21.538 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-17 22:13:21.538 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:13:21.548 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:13:21.548 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 22:13:21.548 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:13:21.548 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 22:13:21.718 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1200
17-03-17 22:13:21.718 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1200
17-03-17 22:13:21.718 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:13:21.838 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1200
17-03-17 22:13:21.838 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1200
17-03-17 22:13:21.838 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:13:21.838 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:13:21.838 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:13:21.838 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 22:13:21.838 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 22:13:21.898 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP 1389
17-03-17 22:13:21.908 -07 000000012 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:13:21.908 -07 000000610 INF: FPGA: 'CAMDBLSNAP 447 447 215 215 28114 150' command took 2 ms to send, 1390 ms to get response, and 1397 ms overall
17-03-17 22:13:21.948 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:13:21.948 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 59. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=945, R2=968, Total=1913. Warn if over 250 bubbles per interval.
17-03-17 22:13:22.228 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 380 ms.
17-03-17 22:13:22.228 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-17 22:13:22.228 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:13:22.228 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 384 ms.
17-03-17 22:13:22.228 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 22:13:22.228 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:13:22.228 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:13:22.228 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:13:22.228 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 515 ms.
17-03-17 22:13:22.228 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-17 22:13:22.238 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 22:13:22.268 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 42 ms.
17-03-17 22:13:22.278 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-17 22:13:22.318 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 42 ms.
17-03-17 22:13:22.328 -07 000000610 INF: Enabling Skipping AutoFocus in the next 0 cycles.
17-03-17 22:13:22.328 -07 000000610 INF: Imaging Cycle 60: ScanTilesCommand Cycle 60 time end. Duration was 165016 ms.
17-03-17 22:13:22.328 -07 000000610 INF: =================== Cycle #60 ===================
17-03-17 22:13:22.328 -07 000000610 INF: ===================  ===================
17-03-17 22:13:22.328 -07 000000424 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-17 22:13:22.338 -07 000000012 INF: FPGA: Recv EXLED1ADCR 25
17-03-17 22:13:22.338 -07 000000424 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:13:22.338 -07 000000424 INF: GreenLED: Using Green data: Photodiode ADC 25 --> 0.0 mW (old method), or 1.8 mW (new method). Difference = 1.8 mW
17-03-17 22:13:22.338 -07 000000424 INF: Predictive Diagnostic Log Cycle Entry Metrics: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 60, FrontChillerTemperature: 3.985358, FrontChillerHeatSinkTemperature: 0.311751, AmbientTemperature: 18.95974, FlowCellCompartmentTemperature: 21.9911, FlowCellTargetTemperature: 22, FlowCellHeatSinkTemperature: 18.67953, GreenLEDSensorTemperature: 26.43762, PhotodiodePowerAdcGreen: 25, PhotodiodePowerMwGreen: 1.835864
17-03-17 22:13:22.378 -07 000000610 INF: Y-Drift Offset assigned 0.002126916.