17-03-17 22:13:22.438 -07 000000610 INF: =================== Cycle #61 ===================
17-03-17 22:13:22.438 -07 000000610 INF: Y Motor: Entering MoveAbsStepped (target = 120609 steps, sync = True, waitForSettling = True)
17-03-17 22:13:22.438 -07 000000610 INF: Y Motor: Moving to 75.3806 mm, started at 74.8325 mm, delta = 0.5481 mm
17-03-17 22:13:22.438 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:13:22.438 -07 000000462 INF: FPGA: Recv YRDPOS 153257
17-03-17 22:13:22.448 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 22:13:22.448 -07 000000610 INF: Y Motor: Encoder = 153257 = motor step 119732.0 = 74.8325 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:13:22.448 -07 000000610 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = 0.5280 mm (844.8 steps). UsingTableMove = False
17-03-17 22:13:22.448 -07 000000610 INF: Y Motor: Moving to 154379 encoder counts
17-03-17 22:13:22.448 -07 000000610 INF: FPGA: Xmit YMVTO 154379\n [Y Motor]
17-03-17 22:13:22.558 -07 000000627 INF: FPGA: Recv YMVTO 154377 870
17-03-17 22:13:22.558 -07 000000610 INF: FPGA: 'YMVTO 154379' command took 0 ms to send, 107 ms to get response, and 116 ms overall
17-03-17 22:13:22.558 -07 000000610 INF: Y Motor: Position error before settling = -2 encoder counts (-0.001 mm)
17-03-17 22:13:22.558 -07 000000610 INF: Y Motor: To move from 74.833 to 75.381 (0.548 mm) should take 877 steps, but required 870 steps (0.544 mm). Slippage = -0.004 mm (-0.01%).
17-03-17 22:13:22.558 -07 000000610 INF: Y Motor: FPGA move command 'YMVTO 154379' took 116 ms, distance = 0.548 mm, average velocity = 4.725 mm/sec
17-03-17 22:13:25.118 -07 000000551 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 61, FrontChillerTemperature: 3.983999,
17-03-17 22:13:25.558 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:13:25.558 -07 000000551 INF: FPGA: Recv YRDPOS 154378
17-03-17 22:13:25.568 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:13:25.568 -07 000000610 INF: Y Motor: Encoder = 154378 = motor step 120607.8 = 75.3799 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:13:25.588 -07 000000610 INF: Y Motor: After move to 75.380580, error = -0.000697, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:13:25.588 -07 000000610 INF: Y Motor: Position error after settling = -1 encoder counts (0.000 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 22:13:25.588 -07 000000610 INF: Y Motor: Moved to 75.3799 after 3148 ms
17-03-17 22:13:25.588 -07 000000610 INF: =================== Cycle #61, Flow Cell Temp 60° ===================
17-03-17 22:13:25.598 -07 000000610 INF: =================== Cycle #61, Flow Cell Temp 60°, FC temperature to 60° ===================
17-03-17 22:13:25.598 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 60000000\n [FlowCellTempControl]
17-03-17 22:13:25.598 -07 000000551 INF: FPGA: Recv TEC2TEMP 
17-03-17 22:13:25.608 -07 000000610 INF: FPGA: 'TEC2TEMP 0 60000000' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:13:25.608 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 22:13:25.608 -07 000000478 INF: FPGA: Recv TEC2EN 
17-03-17 22:13:25.618 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:13:25.618 -07 000000610 INF: =================== Cycle #61, Flow Cell Temp 60° ===================
17-03-17 22:13:25.618 -07 000000610 INF: =================== Cycle #61 ===================
17-03-17 22:13:25.618 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 22:13:25.618 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 22:13:25.648 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-17 22:13:25.648 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 24 to 3. Moving 3 positions.
17-03-17 22:13:25.648 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 22:13:25.948 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 22:13:25.968 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-17 22:13:25.968 -07 000000610 INF: ReagentValve: Move+ from 24 to 3 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-17 22:13:26.018 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 22:13:26.038 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 22:13:26.038 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 22:13:26.138 -07 000000610 INF: =================== Cycle #61, Pumping Reagent PR2 (3) ===================
17-03-17 22:13:26.138 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-17 22:13:26.138 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:13:26.168 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 22:13:26.168 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 22:13:26.168 -07 000000610 INF: =================== Cycle #61, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 22:13:26.298 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-17 22:13:26.338 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:13:26.948 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:13:26.948 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 60. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=945, R2=968, Total=1913. Warn if over 250 bubbles per interval.
17-03-17 22:13:29.468 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:13:29.498 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:13:29.918 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:13:29.948 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:13:30.368 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:13:30.398 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:13:30.398 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-17 22:13:30.398 -07 000000610 INF: =================== Cycle #61, Pumping Reagent PR2 (3) ===================
17-03-17 22:13:30.488 -07 000000012 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 61, FrontChillerTemperature: 3.979922,
17-03-17 22:13:30.528 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:13:30.558 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 22:13:30.558 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 22:13:30.688 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:13:30.718 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 22:13:30.718 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 22:13:30.718 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 22:13:30.848 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 22:13:30.878 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:13:31.308 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:13:31.338 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:13:31.338 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 22:13:31.338 -07 000000610 INF: =================== Cycle #61 ===================
17-03-17 22:13:31.948 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 5 R1 5
17-03-17 22:13:31.948 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 60. Bubbles during last 5000 ms interval: R1=5, R2=5, Total=10. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=950, R2=973, Total=1923. Warn if over 250 bubbles per interval.
17-03-17 22:13:32.558 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 22:13:32.558 -07 000000610 INF: ReagentValve: Go to position 4 - PumpToFlowcell start
17-03-17 22:13:32.558 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 22:13:32.578 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 22:13:32.578 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 3 to 4. Moving 1 positions.
17-03-17 22:13:32.578 -07 000000610 INF: ReagentValve: Xmit +04\r
17-03-17 22:13:32.708 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 22:13:32.728 -07 000000610 INF: ReagentValve: Recv 00CD\r
17-03-17 22:13:32.728 -07 000000610 INF: ReagentValve: Move+ from 3 to 4 took 205 steps, expected 204. Error = 1 steps (0.5%)
17-03-17 22:13:32.778 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 22:13:32.798 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-17 22:13:32.798 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 22:13:32.898 -07 000000610 INF: =================== Cycle #61, Pumping Reagent CMS (4) ===================
17-03-17 22:13:32.898 -07 000000610 INF: LanePump: Pumping from 4, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 22:13:32.898 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:13:32.928 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 22:13:32.928 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 22:13:32.928 -07 000000610 INF: =================== Cycle #61, Pumping Reagent CMS (4), Aspirating port InputPort ===================
17-03-17 22:13:33.058 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 22:13:33.098 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:13:34.538 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:13:34.568 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:13:34.988 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:13:35.018 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:13:35.018 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-17 22:13:35.018 -07 000000610 INF: =================== Cycle #61, Pumping Reagent CMS (4) ===================
17-03-17 22:13:35.148 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:13:35.178 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 22:13:35.178 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 22:13:35.308 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:13:35.338 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 22:13:35.338 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 22:13:35.338 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 22:13:35.468 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 22:13:35.498 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:13:35.868 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 61, FrontChillerTemperature: 3.979922,
17-03-17 22:13:35.928 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:13:35.958 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:13:35.958 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 22:13:35.958 -07 000000610 INF: =================== Cycle #61 ===================
17-03-17 22:13:36.948 -07 000000551 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 3 R1 5
17-03-17 22:13:36.948 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 60. Bubbles during last 5000 ms interval: R1=5, R2=3, Total=8. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=955, R2=976, Total=1931. Warn if over 250 bubbles per interval.
17-03-17 22:13:37.178 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 22:13:37.178 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 22:13:37.178 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 22:13:37.198 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-17 22:13:37.198 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 4 to 3. Moving 1 positions.
17-03-17 22:13:37.198 -07 000000610 INF: ReagentValve: Xmit -03\r
17-03-17 22:13:37.348 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 22:13:37.368 -07 000000610 INF: ReagentValve: Recv 00E1\r
17-03-17 22:13:37.368 -07 000000610 INF: ReagentValve: Move- from 4 to 3 took 225 steps, expected 204. Error = 21 steps (10.3%)
17-03-17 22:13:37.418 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 22:13:37.438 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 22:13:37.438 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 22:13:37.538 -07 000000610 INF: =================== Cycle #61, Pumping Reagent PR2 (3) ===================
17-03-17 22:13:37.538 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 22:13:37.538 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:13:37.568 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 22:13:37.568 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 22:13:37.568 -07 000000610 INF: =================== Cycle #61, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 22:13:37.698 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 22:13:37.738 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:13:38.608 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:13:38.638 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:13:38.638 -07 000000610 INF: LanePump: Waited 900 ms for pump motion to complete
17-03-17 22:13:38.638 -07 000000610 INF: =================== Cycle #61, Pumping Reagent PR2 (3) ===================
17-03-17 22:13:38.768 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:13:38.798 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 22:13:38.798 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 22:13:38.928 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:13:38.958 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 22:13:38.958 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 22:13:38.958 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 22:13:39.088 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 22:13:39.118 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:13:39.548 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:13:39.578 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:13:39.578 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 22:13:39.578 -07 000000610 INF: =================== Cycle #61 ===================
17-03-17 22:13:39.578 -07 000000551 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 22:13:39.578 -07 000000012 INF: WaitCommand(10000) start
17-03-17 22:13:39.578 -07 000000551 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 22:13:40.798 -07 000000551 INF: AsyncDelayTimer waited 1216ms
17-03-17 22:13:40.798 -07 000000551 INF: LanePump: Xmit /1?\r
17-03-17 22:13:40.828 -07 000000551 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 22:13:40.828 -07 000000551 INF: LanePump: Current Position of Pump is: 1110
17-03-17 22:13:40.958 -07 000000551 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 22:13:40.998 -07 000000551 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:13:41.228 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 61, FrontChillerTemperature: 3.977204,
17-03-17 22:13:41.948 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 3 R1 2
17-03-17 22:13:41.948 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 60. Bubbles during last 5000 ms interval: R1=2, R2=3, Total=5. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=957, R2=979, Total=1936. Warn if over 250 bubbles per interval.
17-03-17 22:13:42.528 -07 000000551 INF: LanePump: Xmit /1Q\r
17-03-17 22:13:42.558 -07 000000551 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:13:42.978 -07 000000551 INF: LanePump: Xmit /1Q\r
17-03-17 22:13:43.008 -07 000000551 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:13:43.008 -07 000000551 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-17 22:13:43.008 -07 000000551 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 22:13:43.008 -07 000000551 INF: ===================  ===================
17-03-17 22:13:46.598 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 61, FrontChillerTemperature: 3.985358,
17-03-17 22:13:46.958 -07 000000478 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:13:46.958 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 60. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=957, R2=979, Total=1936. Warn if over 250 bubbles per interval.
17-03-17 22:13:49.588 -07 000000012 INF: WaitCommand(10000) end
17-03-17 22:13:49.588 -07 000000610 INF: =================== Cycle #61, Pumping Reagent PR2 (3) ===================
17-03-17 22:13:49.588 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 250 µL, calling command Pumping to Flow Cell #1
17-03-17 22:13:49.588 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:13:49.618 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 22:13:49.618 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 22:13:49.618 -07 000000610 INF: =================== Cycle #61, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 22:13:49.748 -07 000000610 INF: LanePump: Xmit /1V400IP1500R\r
17-03-17 22:13:49.788 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:13:51.948 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 0
17-03-17 22:13:51.948 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 60. Bubbles during last 5000 ms interval: R1=0, R2=1, Total=1. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=957, R2=980, Total=1937. Warn if over 250 bubbles per interval.
17-03-17 22:13:51.978 -07 000000478 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 61, FrontChillerTemperature: 3.990831,
17-03-17 22:13:55.918 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:13:55.948 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:13:56.368 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:13:56.398 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:13:56.818 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:13:56.848 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:13:56.948 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 1
17-03-17 22:13:56.948 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 60. Bubbles during last 5000 ms interval: R1=1, R2=1, Total=2. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=958, R2=981, Total=1939. Warn if over 250 bubbles per interval.
17-03-17 22:13:57.268 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:13:57.298 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:13:57.338 -07 000000478 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 61, FrontChillerTemperature: 4.02213,
17-03-17 22:13:57.718 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:13:57.748 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:13:57.748 -07 000000610 INF: LanePump: Waited 7959 ms for pump motion to complete
17-03-17 22:13:57.748 -07 000000610 INF: =================== Cycle #61, Pumping Reagent PR2 (3) ===================
17-03-17 22:13:57.878 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:13:57.908 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 22:13:57.908 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 22:13:58.038 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:13:58.068 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 22:13:58.068 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 22:13:58.068 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 22:13:58.198 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 22:13:58.228 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:13:58.658 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:13:58.688 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:13:58.688 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 22:13:58.688 -07 000000610 INF: =================== Cycle #61 ===================
17-03-17 22:13:59.908 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 22:13:59.908 -07 000000610 INF: ReagentValve: Go to position 1 - PumpToFlowcell start
17-03-17 22:13:59.908 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 22:13:59.928 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 22:13:59.928 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 1. Moving 2 positions.
17-03-17 22:13:59.928 -07 000000610 INF: ReagentValve: Xmit -01\r
17-03-17 22:14:00.138 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 22:14:00.158 -07 000000610 INF: ReagentValve: Recv 0198\r
17-03-17 22:14:00.158 -07 000000610 INF: ReagentValve: Move- from 3 to 1 took 408 steps, expected 408. Error = 0 steps (0.0%)
17-03-17 22:14:00.208 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 22:14:00.228 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-17 22:14:00.228 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 22:14:00.328 -07 000000610 INF: =================== Cycle #61, Pumping Reagent IMT (1) ===================
17-03-17 22:14:00.328 -07 000000610 INF: LanePump: Pumping from 1, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 22:14:00.328 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:14:00.358 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 22:14:00.358 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 22:14:00.358 -07 000000610 INF: =================== Cycle #61, Pumping Reagent IMT (1), Aspirating port InputPort ===================
17-03-17 22:14:00.488 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 22:14:00.528 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:14:01.948 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:14:01.948 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 60. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=958, R2=981, Total=1939. Warn if over 250 bubbles per interval.
17-03-17 22:14:01.968 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:14:01.998 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:14:02.418 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:14:02.448 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:14:02.448 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-17 22:14:02.448 -07 000000610 INF: =================== Cycle #61, Pumping Reagent IMT (1) ===================
17-03-17 22:14:02.578 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:14:02.608 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 22:14:02.608 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 22:14:02.708 -07 000000012 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 61, FrontChillerTemperature: 4.015368,
17-03-17 22:14:02.738 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:14:02.768 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 22:14:02.768 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 22:14:02.768 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 22:14:02.898 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 22:14:02.928 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:14:03.358 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:14:03.388 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:14:03.388 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 22:14:03.388 -07 000000610 INF: =================== Cycle #61 ===================
17-03-17 22:14:04.608 -07 000000610 INF: AsyncDelayTimer waited 1213ms
17-03-17 22:14:04.608 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 22:14:04.608 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 22:14:04.628 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-17 22:14:04.628 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 1 to 3. Moving 2 positions.
17-03-17 22:14:04.628 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 22:14:04.858 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 22:14:04.878 -07 000000610 INF: ReagentValve: Recv 01AC\r
17-03-17 22:14:04.878 -07 000000610 INF: ReagentValve: Move+ from 1 to 3 took 428 steps, expected 408. Error = 20 steps (4.9%)
17-03-17 22:14:04.928 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 22:14:04.948 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 22:14:04.948 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 22:14:05.048 -07 000000610 INF: =================== Cycle #61, Pumping Reagent PR2 (3) ===================
17-03-17 22:14:05.048 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 22:14:05.048 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:14:05.078 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 22:14:05.078 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 22:14:05.078 -07 000000610 INF: =================== Cycle #61, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 22:14:05.208 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 22:14:05.248 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:14:06.118 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:14:06.148 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:14:06.148 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-17 22:14:06.148 -07 000000610 INF: =================== Cycle #61, Pumping Reagent PR2 (3) ===================
17-03-17 22:14:06.278 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:14:06.308 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 22:14:06.308 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 22:14:06.438 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:14:06.468 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 22:14:06.468 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 22:14:06.468 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 22:14:06.598 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 22:14:06.628 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:14:06.948 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:14:06.948 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 60. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=958, R2=981, Total=1939. Warn if over 250 bubbles per interval.
17-03-17 22:14:07.058 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:14:07.088 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:14:07.088 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 22:14:07.088 -07 000000610 INF: =================== Cycle #61 ===================
17-03-17 22:14:07.088 -07 000000610 INF: =================== Cycle #61, Flow Cell Temp 65° ===================
17-03-17 22:14:07.088 -07 000000610 INF: =================== Cycle #61, Flow Cell Temp 65°, FC temperature to 65° ===================
17-03-17 22:14:07.088 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 65000000\n [FlowCellTempControl]
17-03-17 22:14:07.088 -07 000000012 INF: FPGA: Recv TEC2TEMP 
17-03-17 22:14:07.098 -07 000000610 INF: FPGA: 'TEC2TEMP 0 65000000' command took 1 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:14:07.098 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 22:14:07.098 -07 000000618 INF: FPGA: Recv TEC2EN 
17-03-17 22:14:07.108 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:14:07.108 -07 000000610 INF: =================== Cycle #61, Flow Cell Temp 65° ===================
17-03-17 22:14:07.108 -07 000000610 INF: =================== Cycle #61 ===================
17-03-17 22:14:07.108 -07 000000610 INF: WaitCommand(30000) start
17-03-17 22:14:08.078 -07 000000478 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 61, FrontChillerTemperature: 3.99219,
17-03-17 22:14:11.948 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:14:11.958 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 60. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=958, R2=981, Total=1939. Warn if over 250 bubbles per interval.
17-03-17 22:14:13.458 -07 000000627 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 61, FrontChillerTemperature: 3.977204,
17-03-17 22:14:16.948 -07 000000478 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:14:16.958 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 60. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=958, R2=981, Total=1939. Warn if over 250 bubbles per interval.
17-03-17 22:14:18.818 -07 000000627 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 61, FrontChillerTemperature: 4.000345,
17-03-17 22:14:21.948 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:14:21.958 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 60. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=958, R2=981, Total=1939. Warn if over 250 bubbles per interval.
17-03-17 22:14:24.188 -07 000000448 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 61, FrontChillerTemperature: 4.011254,
17-03-17 22:14:26.948 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:14:26.958 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 60. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=958, R2=981, Total=1939. Warn if over 250 bubbles per interval.
17-03-17 22:14:29.568 -07 000000627 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 61, FrontChillerTemperature: 4.000345,
17-03-17 22:14:31.958 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:14:31.958 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 60. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=958, R2=981, Total=1939. Warn if over 250 bubbles per interval.
17-03-17 22:14:34.928 -07 000000623 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 61, FrontChillerTemperature: 4.007176,
17-03-17 22:14:36.958 -07 000000478 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:14:36.958 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 60. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=958, R2=981, Total=1939. Warn if over 250 bubbles per interval.
17-03-17 22:14:37.118 -07 000000610 INF: WaitCommand(30000) end
17-03-17 22:14:37.118 -07 000000610 INF: =================== Cycle #61, Pumping Reagent PR2 (3) ===================
17-03-17 22:14:37.118 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 5 µL, calling command Pumping to Flow Cell #1
17-03-17 22:14:37.218 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:14:37.248 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 22:14:37.248 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 22:14:37.248 -07 000000610 INF: =================== Cycle #61, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 22:14:37.378 -07 000000610 INF: LanePump: Xmit /1V400IP30R\r
17-03-17 22:14:37.418 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:14:37.958 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:14:37.988 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:14:37.988 -07 000000610 INF: LanePump: Waited 569 ms for pump motion to complete
17-03-17 22:14:37.988 -07 000000610 INF: =================== Cycle #61, Pumping Reagent PR2 (3) ===================
17-03-17 22:14:38.118 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:14:38.148 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 22:14:38.148 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-17 22:14:38.278 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:14:38.308 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 22:14:38.308 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-17 22:14:38.308 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 22:14:38.438 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 22:14:38.468 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:14:38.898 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:14:38.928 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:14:38.928 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 22:14:38.928 -07 000000610 INF: =================== Cycle #61 ===================
17-03-17 22:14:38.928 -07 000000627 INF: WaitCommand(30000) start
17-03-17 22:14:38.928 -07 000000623 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 22:14:38.928 -07 000000623 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 22:14:40.148 -07 000000623 INF: AsyncDelayTimer waited 1216ms
17-03-17 22:14:40.148 -07 000000623 INF: LanePump: Xmit /1?\r
17-03-17 22:14:40.178 -07 000000623 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 22:14:40.178 -07 000000623 INF: LanePump: Current Position of Pump is: 1920
17-03-17 22:14:40.298 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 61, FrontChillerTemperature: 3.971733,
17-03-17 22:14:40.308 -07 000000623 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 22:14:40.348 -07 000000623 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:14:41.958 -07 000000448 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:14:41.958 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 60. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=958, R2=981, Total=1939. Warn if over 250 bubbles per interval.
17-03-17 22:14:42.688 -07 000000623 INF: LanePump: Xmit /1Q\r
17-03-17 22:14:42.718 -07 000000623 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:14:43.138 -07 000000623 INF: LanePump: Xmit /1Q\r
17-03-17 22:14:43.168 -07 000000623 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:14:43.168 -07 000000623 INF: LanePump: Waited 2819 ms for pump motion to complete
17-03-17 22:14:43.168 -07 000000623 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 22:14:43.168 -07 000000623 INF: ===================  ===================
17-03-17 22:14:45.668 -07 000000623 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 61, FrontChillerTemperature: 3.977204,
17-03-17 22:14:46.958 -07 000000448 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:14:46.958 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 60. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=958, R2=981, Total=1939. Warn if over 250 bubbles per interval.
17-03-17 22:14:51.028 -07 000000623 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 61, FrontChillerTemperature: 3.973092,
17-03-17 22:14:51.958 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:14:51.958 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 60. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=958, R2=981, Total=1939. Warn if over 250 bubbles per interval.
17-03-17 22:14:56.388 -07 000000012 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 61, FrontChillerTemperature: 3.971733,
17-03-17 22:14:56.958 -07 000000429 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:14:56.958 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 60. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=958, R2=981, Total=1939. Warn if over 250 bubbles per interval.
17-03-17 22:15:01.748 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 61, FrontChillerTemperature: 4.024884,
17-03-17 22:15:01.958 -07 000000429 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:15:01.958 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 60. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=958, R2=981, Total=1939. Warn if over 250 bubbles per interval.
17-03-17 22:15:06.958 -07 000000448 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:15:06.958 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 60. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=958, R2=981, Total=1939. Warn if over 250 bubbles per interval.
17-03-17 22:15:07.108 -07 000000478 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 61, FrontChillerTemperature: 4.03576,
17-03-17 22:15:08.938 -07 000000627 INF: WaitCommand(30000) end
17-03-17 22:15:08.938 -07 000000610 INF: =================== Cycle #61, Flow Cell Temp 22° ===================
17-03-17 22:15:08.938 -07 000000610 INF: =================== Cycle #61, Flow Cell Temp 22°, FC temperature to 22° ===================
17-03-17 22:15:08.938 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 22000000\n [FlowCellTempControl]
17-03-17 22:15:08.948 -07 000000478 INF: FPGA: Recv TEC2TEMP 
17-03-17 22:15:08.948 -07 000000610 INF: FPGA: 'TEC2TEMP 0 22000000' command took 1 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:15:08.948 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 22:15:08.948 -07 000000012 INF: FPGA: Recv TEC2EN 
17-03-17 22:15:08.958 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:15:08.958 -07 000000610 INF: =================== Cycle #61, Flow Cell Temp 22° ===================
17-03-17 22:15:08.958 -07 000000610 INF: =================== Cycle #61 ===================
17-03-17 22:15:08.958 -07 000000610 INF: =================== Cycle #61, Pumping Reagent PR2 (3) ===================
17-03-17 22:15:08.958 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-17 22:15:08.958 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:15:08.988 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 22:15:08.988 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 22:15:08.988 -07 000000610 INF: =================== Cycle #61, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 22:15:09.118 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-17 22:15:09.158 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:15:11.958 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:15:11.958 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 60. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=958, R2=981, Total=1939. Warn if over 250 bubbles per interval.
17-03-17 22:15:12.288 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:15:12.318 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:15:12.468 -07 000000478 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 61, FrontChillerTemperature: 4.001704,
17-03-17 22:15:12.738 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:15:12.768 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:15:13.188 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:15:13.218 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:15:13.218 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-17 22:15:13.218 -07 000000610 INF: =================== Cycle #61, Pumping Reagent PR2 (3) ===================
17-03-17 22:15:13.348 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:15:13.378 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 22:15:13.378 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 22:15:13.508 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:15:13.538 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 22:15:13.538 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 22:15:13.538 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 22:15:13.668 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 22:15:13.698 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:15:14.128 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:15:14.158 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:15:14.158 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 22:15:14.158 -07 000000610 INF: =================== Cycle #61 ===================
17-03-17 22:15:15.378 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 22:15:15.378 -07 000000610 INF: ReagentValve: Go to position 2 - PumpToFlowcell start
17-03-17 22:15:15.378 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 22:15:15.398 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 22:15:15.398 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 2. Moving 1 positions.
17-03-17 22:15:15.398 -07 000000610 INF: ReagentValve: Xmit -02\r
17-03-17 22:15:15.548 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 22:15:15.568 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-17 22:15:15.568 -07 000000610 INF: ReagentValve: Move- from 3 to 2 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-17 22:15:15.618 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 22:15:15.638 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-17 22:15:15.638 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 22:15:15.738 -07 000000610 INF: =================== Cycle #61, Pumping Reagent USM (2) ===================
17-03-17 22:15:15.738 -07 000000610 INF: LanePump: Pumping from 2, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 22:15:15.738 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:15:15.768 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 22:15:15.768 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 22:15:15.768 -07 000000610 INF: =================== Cycle #61, Pumping Reagent USM (2), Aspirating port InputPort ===================
17-03-17 22:15:15.898 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 22:15:15.938 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:15:16.958 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 1
17-03-17 22:15:16.958 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 60. Bubbles during last 5000 ms interval: R1=1, R2=1, Total=2. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=959, R2=982, Total=1941. Warn if over 250 bubbles per interval.
17-03-17 22:15:17.378 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:15:17.408 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:15:17.828 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:15:17.828 -07 000000623 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 61, FrontChillerTemperature: 3.975845,
17-03-17 22:15:17.858 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:15:17.858 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-17 22:15:17.858 -07 000000610 INF: =================== Cycle #61, Pumping Reagent USM (2) ===================
17-03-17 22:15:17.988 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:15:18.018 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 22:15:18.018 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 22:15:18.148 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:15:18.178 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 22:15:18.178 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 22:15:18.178 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 22:15:18.308 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 22:15:18.338 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:15:18.768 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:15:18.798 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:15:18.798 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 22:15:18.798 -07 000000610 INF: =================== Cycle #61 ===================
17-03-17 22:15:20.018 -07 000000610 INF: AsyncDelayTimer waited 1217ms
17-03-17 22:15:20.018 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 22:15:20.018 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 22:15:20.038 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-17 22:15:20.038 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 2 to 3. Moving 1 positions.
17-03-17 22:15:20.038 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 22:15:20.188 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 22:15:20.208 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-17 22:15:20.208 -07 000000610 INF: ReagentValve: Move+ from 2 to 3 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-17 22:15:20.258 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 22:15:20.278 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 22:15:20.278 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 22:15:20.378 -07 000000610 INF: =================== Cycle #61, Pumping Reagent PR2 (3) ===================
17-03-17 22:15:20.378 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 22:15:20.378 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:15:20.408 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 22:15:20.408 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 22:15:20.408 -07 000000610 INF: =================== Cycle #61, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 22:15:20.538 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 22:15:20.578 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:15:21.448 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:15:21.478 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:15:21.478 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-17 22:15:21.478 -07 000000610 INF: =================== Cycle #61, Pumping Reagent PR2 (3) ===================
17-03-17 22:15:21.608 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:15:21.638 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 22:15:21.638 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 22:15:21.768 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:15:21.798 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 22:15:21.798 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 22:15:21.798 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 22:15:21.928 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 22:15:21.958 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:15:21.958 -07 000000429 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:15:21.958 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 60. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=959, R2=982, Total=1941. Warn if over 250 bubbles per interval.
17-03-17 22:15:22.388 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:15:22.418 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:15:22.418 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 22:15:22.418 -07 000000610 INF: =================== Cycle #61 ===================
17-03-17 22:15:22.418 -07 000000478 INF: WaitCommand(10000) start
17-03-17 22:15:22.418 -07 000000618 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 22:15:22.418 -07 000000618 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 22:15:23.188 -07 000000429 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 61, FrontChillerTemperature: 3.988112,
17-03-17 22:15:23.638 -07 000000618 INF: AsyncDelayTimer waited 1214ms
17-03-17 22:15:23.638 -07 000000618 INF: LanePump: Xmit /1?\r
17-03-17 22:15:23.668 -07 000000618 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 22:15:23.668 -07 000000618 INF: LanePump: Current Position of Pump is: 1110
17-03-17 22:15:23.798 -07 000000618 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 22:15:23.838 -07 000000618 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:15:25.368 -07 000000618 INF: LanePump: Xmit /1Q\r
17-03-17 22:15:25.398 -07 000000618 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:15:25.818 -07 000000618 INF: LanePump: Xmit /1Q\r
17-03-17 22:15:25.848 -07 000000618 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:15:25.848 -07 000000618 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-17 22:15:25.848 -07 000000618 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 22:15:25.848 -07 000000618 INF: ===================  ===================
17-03-17 22:15:26.958 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:15:26.958 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 60. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=959, R2=982, Total=1941. Warn if over 250 bubbles per interval.
17-03-17 22:15:28.548 -07 000000429 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 61, FrontChillerTemperature: 4.016692,
17-03-17 22:15:32.428 -07 000000478 INF: WaitCommand(10000) end
17-03-17 22:15:32.428 -07 000000610 INF: =================== Cycle #61, Imaging ===================
17-03-17 22:15:32.428 -07 000000610 INF: Imaging Cycle 61: ScanTilesCommand Cycle 61 time start.
17-03-17 22:15:32.428 -07 000000610 INF: ReagentValve: Go to position 24 (Plug) - Start of ScanTilesCommand
17-03-17 22:15:32.428 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 22:15:32.998 -07 000000623 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:15:32.998 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 60. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=959, R2=982, Total=1941. Warn if over 250 bubbles per interval.
17-03-17 22:15:33.018 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 22:15:33.018 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 24. Moving 3 positions.
17-03-17 22:15:33.018 -07 000000610 INF: ReagentValve: Xmit -18\r
17-03-17 22:15:33.318 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 22:15:33.338 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-17 22:15:33.338 -07 000000610 INF: ReagentValve: Move- from 3 to 24 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-17 22:15:33.388 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 22:15:33.408 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-17 22:15:33.408 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:15:33.408 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:15:33.408 -07 000000431 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms start.
17-03-17 22:15:33.408 -07 000000431 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:15:33.408 -07 000000431 INF: FPGA: Xmit EXLED1ON\n [RedLED]
17-03-17 22:15:33.408 -07 000000448 INF: FPGA: Recv EXLED1ON 
17-03-17 22:15:33.418 -07 000000431 INF: FPGA: 'EXLED1ON' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 22:15:33.418 -07 000000431 INF: FPGA: Xmit EXLED1ADCR\n [RedLED]
17-03-17 22:15:33.418 -07 000000012 INF: FPGA: Recv EXLED1ADCR 23115
17-03-17 22:15:33.428 -07 000000431 INF: FPGA: 'EXLED1ADCR' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:15:33.428 -07 000000431 INF: RedLED: Using Red data: Photodiode ADC 23115 --> 7.4 mW (old method), or 204.9 mW (new method). Difference = 197.5 mW
17-03-17 22:15:33.428 -07 000000431 INF: FPGA: Xmit EXLED1OFF\n [RedLED]
17-03-17 22:15:33.428 -07 000000448 INF: FPGA: Recv EXLED1OFF 
17-03-17 22:15:33.438 -07 000000431 INF: FPGA: 'EXLED1OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:15:33.438 -07 000000431 INF: RedLED: LED was on for 20 ms
17-03-17 22:15:33.438 -07 000000431 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms end. Duration was 25 ms.
17-03-17 22:15:33.438 -07 000000431 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms start.
17-03-17 22:15:33.438 -07 000000431 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:15:33.438 -07 000000431 INF: FPGA: Xmit EXLED2ON\n [GreenLED]
17-03-17 22:15:33.438 -07 000000448 INF: FPGA: Recv EXLED2ON 
17-03-17 22:15:33.448 -07 000000431 INF: FPGA: 'EXLED2ON' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:15:33.448 -07 000000431 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-17 22:15:33.448 -07 000000618 INF: FPGA: Recv EXLED1ADCR 2096
17-03-17 22:15:33.458 -07 000000431 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:15:33.458 -07 000000431 INF: GreenLED: Using Green data: Photodiode ADC 2096 --> 0.9 mW (old method), or 182.2 mW (new method). Difference = 181.2 mW
17-03-17 22:15:33.458 -07 000000431 INF: FPGA: Xmit EXLED2OFF\n [GreenLED]
17-03-17 22:15:33.458 -07 000000623 INF: FPGA: Recv EXLED2OFF 
17-03-17 22:15:33.468 -07 000000431 INF: FPGA: 'EXLED2OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:15:33.468 -07 000000431 INF: GreenLED: LED was on for 20 ms
17-03-17 22:15:33.468 -07 000000431 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms end. Duration was 27 ms.
17-03-17 22:15:33.468 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-17 22:15:33.468 -07 000000012 INF: FPGA: Recv EMCUR 
17-03-17 22:15:33.478 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:15:33.478 -07 000000610 INF: FPGA: Xmit EMOUT 20 70\n [Compensator]
17-03-17 22:15:33.908 -07 000000623 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 61, FrontChillerTemperature: 4.030322,
17-03-17 22:15:33.978 -07 000000618 INF: FPGA: Recv EMOUT
17-03-17 22:15:33.978 -07 000000610 INF: FPGA: 'EMOUT 20 70' command took 0 ms to send, 493 ms to get response, and 502 ms overall
17-03-17 22:15:33.978 -07 000000610 INF: FPGA: Xmit EMCUR 75\n [Compensator]
17-03-17 22:15:33.978 -07 000000012 INF: FPGA: Recv EMCUR 
17-03-17 22:15:33.988 -07 000000610 INF: FPGA: 'EMCUR 75' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:15:33.988 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 22:15:33.988 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 75.3798828125, Z-Position -0.127884649701988. ------
17-03-17 22:15:33.988 -07 000000623 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:15:33.988 -07 000000012 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.17949 mm
17-03-17 22:15:33.988 -07 000000012 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:15:33.988 -07 000000431 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-17 22:15:33.988 -07 000000431 INF: Y Motor: Moving to 59.9126 mm, started at 75.3799 mm, delta = -15.4673 mm
17-03-17 22:15:33.988 -07 000000618 INF: Z Motor: Entering MoveAbsStepped (DAC = 39209, sync = True, waitForSettling = False)
17-03-17 22:15:33.988 -07 000000618 INF: Z Motor: Moving to -0.179487 mm, started at -0.127885 mm, distance = -51.60 um
17-03-17 22:15:33.998 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:15:34.008 -07 000000618 INF: FPGA: Xmit ZDACW 39209\n [Z Motor]
17-03-17 22:15:34.598 -07 000000429 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:15:34.598 -07 000000429 INF: FPGA: Recv YRDPOS 154378
17-03-17 22:15:34.598 -07 000000429 INF: FPGA: Recv ZDACW
17-03-17 22:15:34.598 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 590 ms to get response, and 601 ms overall
17-03-17 22:15:34.598 -07 000000431 INF: Y Motor: Encoder = 154378 = motor step 120607.8 = 75.3799 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:15:34.598 -07 000000431 INF: Y Motor: Last commanded position = 75.3806 mm (120608.9 steps), delta from last commanded position = -15.4680 mm (-24748.8 steps). UsingTableMove = False
17-03-17 22:15:34.598 -07 000000431 INF: Y Motor: Moving to 122701 encoder counts
17-03-17 22:15:34.598 -07 000000431 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-17 22:15:34.598 -07 000000623 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 600 ms to get response, and 604 ms overall
17-03-17 22:15:34.598 -07 000000618 INF: FPGA: 'ZDACW 39209' command took 0 ms to send, 580 ms to get response, and 601 ms overall
17-03-17 22:15:34.608 -07 000000618 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:15:34.608 -07 000000478 INF: FPGA: Recv ZDACR 39209
17-03-17 22:15:34.618 -07 000000623 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:15:34.618 -07 000000618 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-17 22:15:34.618 -07 000000618 INF: Z Motor: MoveAbsStepped took 621 ms (did NOT wait for settling yet))
17-03-17 22:15:34.818 -07 000000429 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:15:34.818 -07 000000623 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 220 ms overall
17-03-17 22:15:36.278 -07 000000576 INF: FPGA: Recv YMVTO 122703 24775
17-03-17 22:15:36.278 -07 000000431 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1677 ms to get response, and 1686 ms overall
17-03-17 22:15:36.278 -07 000000431 INF: Y Motor: Position error before settling = 2 encoder counts (0.001 mm)
17-03-17 22:15:36.278 -07 000000431 INF: Y Motor: To move from 75.380 to 59.913 (-15.467 mm) should take 24748 steps, but required 24775 steps (15.484 mm). Slippage = 0.017 mm (0.00%).
17-03-17 22:15:36.278 -07 000000431 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1686 ms, distance = 15.467 mm, average velocity = 9.174 mm/sec
17-03-17 22:15:36.958 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:15:36.958 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 60. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=959, R2=982, Total=1941. Warn if over 250 bubbles per interval.
17-03-17 22:15:39.128 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:15:39.128 -07 000000448 INF: FPGA: Recv YRDPOS 122696
17-03-17 22:15:39.138 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:15:39.138 -07 000000431 INF: Y Motor: Encoder = 122696 = motor step 95856.3 = 59.9102 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:15:39.158 -07 000000431 INF: Y Motor: After move to 59.912609, error = -0.002453, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:15:39.158 -07 000000431 INF: Y Motor: Position error after settling = -5 encoder counts (-0.002 mm), Delta during settling = -7 counts (-0.003 mm)
17-03-17 22:15:39.158 -07 000000431 INF: Y Motor: Moved to 59.9102 after 5166 ms
17-03-17 22:15:39.158 -07 000000012 INF: Z Motor: EndOfMoveAbsStepped: target = -0.179487 mm (DAC = 39209)
17-03-17 22:15:39.158 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:15:39.168 -07 000000627 INF: FPGA: Recv ZSGSRD 37236
17-03-17 22:15:39.168 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 22:15:39.168 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:15:39.168 -07 000000478 INF: FPGA: Recv ZSGSRD 37230
17-03-17 22:15:39.178 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:15:39.178 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:15:39.178 -07 000000623 INF: FPGA: Recv ZSGSRD 37229
17-03-17 22:15:39.188 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:15:39.188 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:15:39.188 -07 000000448 INF: FPGA: Recv ZSGSRD 37227
17-03-17 22:15:39.198 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:15:39.198 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:15:39.198 -07 000000623 INF: FPGA: Recv ZSGSRD 37226
17-03-17 22:15:39.208 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:15:39.208 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:15:39.208 -07 000000448 INF: FPGA: Recv ZSGSRD 37229
17-03-17 22:15:39.218 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:15:39.218 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:15:39.218 -07 000000627 INF: FPGA: Recv ZSGSRD 37231
17-03-17 22:15:39.228 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:15:39.228 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:15:39.228 -07 000000478 INF: FPGA: Recv ZSGSRD 37227
17-03-17 22:15:39.238 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:15:39.238 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:15:39.238 -07 000000627 INF: FPGA: Recv ZSGSRD 37229
17-03-17 22:15:39.248 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:15:39.248 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:15:39.248 -07 000000431 INF: FPGA: Recv ZSGSRD 37230
17-03-17 22:15:39.258 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:15:39.268 -07 000000012 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:15:39.268 -07 000000627 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 61, FrontChillerTemperature: 4.028963,
17-03-17 22:15:39.268 -07 000000431 INF: FPGA: Recv ZPIEZORD 33707
17-03-17 22:15:39.278 -07 000000012 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:15:39.278 -07 000000012 INF: Z Motor: Piezo is near 52.0 V (nominally 0 to 100 V), expect near 59.8 V, since DAC is at 5.983 V. Piezo Error = -7.8 V.
17-03-17 22:15:39.278 -07 000000012 INF: Z Motor: ReadAdcAverage: Commanded Z = -179.5 um, Read 10 ADC samples: Avg = 37229 (-178.6 uncal um), Error = 0.9 uncal um, Median = 37229 (-178.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 37226 (-178.6 uncal um), Max = 37236 (-178.6 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 22:15:39.278 -07 000000012 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37229, posNoise = 7, negNoise = 3
17-03-17 22:15:39.278 -07 000000012 INF: Z Motor: After move to -0.179487, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:15:39.278 -07 000000012 INF: Z Motor: Settle wait time = 5169 ms, measure time = 113 ms (allowed 150 ms), total time = 5282 ms
17-03-17 22:15:39.278 -07 000000012 INF: Z Motor: Waiting extra 37 ms after reading position to reach expected total of 150 ms
17-03-17 22:15:39.318 -07 000000012 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 5323 ms
17-03-17 22:15:39.318 -07 000000012 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:15:39.318 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:15:39.318 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:15:39.318 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:15:39.318 -07 000000478 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:15:39.318 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:15:39.318 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:15:39.318 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:15:39.318 -07 000000576 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-17 22:15:39.348 -07 000000576 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 24 ms.
17-03-17 22:15:39.348 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:15:39.348 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-17 22:15:39.348 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:15:39.358 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 22:15:39.358 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 43 ms.
17-03-17 22:15:39.368 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:15:39.408 -07 000000623 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:15:39.608 -07 000000623 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:15:39.608 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:15:39.618 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:15:39.618 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 592259944, 0x0, 559484976) start.
17-03-17 22:15:39.648 -07 000000627 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:15:39.648 -07 000000618 INF: FPGA: Recv CAMSNAP
17-03-17 22:15:39.648 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 285 ms overall
17-03-17 22:15:39.738 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 592259944, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 22:15:39.738 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:15:39.748 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:15:39.748 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-17 22:15:39.848 -07 000000012 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:15:39.848 -07 000000627 INF: Image SNR check: start
17-03-17 22:15:39.848 -07 000000431 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:15:39.858 -07 000000012 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:15:39.858 -07 000000012 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:15:39.858 -07 000000627 INF: Image SNR check: pass  [peak (Max-Min)=58.24]
17-03-17 22:15:39.858 -07 000000627 INF: Autofocus start
17-03-17 22:15:39.858 -07 000000627 INF: MeasureProfile start
17-03-17 22:15:39.868 -07 000000627 INF: MeasureProfile done
17-03-17 22:15:39.868 -07 000000627 INF: X=0  Z correction [um]=-0.0713522
17-03-17 22:15:39.868 -07 000000627 INF: Autofocus finished
17-03-17 22:15:40.058 -07 000000448 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:15:40.058 -07 000000012 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 205 ms overall
17-03-17 22:15:40.058 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.91015625, Z-position -0.179490345836754. ----------
17-03-17 22:15:40.068 -07 000000610 INF: Cycle	61	Tile	1	Exposure Settings		A	448	G	215	T	215	C	448
17-03-17 22:15:40.068 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37706, sync = True, waitForSettling = True)
17-03-17 22:15:40.068 -07 000000610 INF: Z Motor: Moving to -0.172607 mm, started at -0.179490 mm, distance = 6.88 um
17-03-17 22:15:40.068 -07 000000610 INF: FPGA: Xmit ZDACW 37706\n [Z Motor]
17-03-17 22:15:40.068 -07 000000623 INF: FPGA: Recv ZDACW
17-03-17 22:15:40.078 -07 000000610 INF: FPGA: 'ZDACW 37706' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 22:15:40.078 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:15:40.078 -07 000000478 INF: FPGA: Recv ZDACR 37706
17-03-17 22:15:40.088 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:15:40.088 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:15:40.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:15:40.238 -07 000000576 INF: FPGA: Recv ZSGSRD 36154
17-03-17 22:15:40.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:15:40.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:15:40.248 -07 000000429 INF: FPGA: Recv ZSGSRD 36159
17-03-17 22:15:40.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:15:40.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:15:40.268 -07 000000576 INF: FPGA: Recv ZSGSRD 36163
17-03-17 22:15:40.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:15:40.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:15:40.278 -07 000000012 INF: FPGA: Recv ZSGSRD 36154
17-03-17 22:15:40.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:15:40.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:15:40.298 -07 000000448 INF: FPGA: Recv ZSGSRD 36165
17-03-17 22:15:40.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:15:40.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:15:40.308 -07 000000627 INF: FPGA: Recv ZSGSRD 36156
17-03-17 22:15:40.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:15:40.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:15:40.338 -07 000000623 INF: FPGA: Recv ZSGSRD 36164
17-03-17 22:15:40.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:15:40.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:15:40.348 -07 000000448 INF: FPGA: Recv ZSGSRD 36163
17-03-17 22:15:40.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:15:40.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:15:40.368 -07 000000576 INF: FPGA: Recv ZSGSRD 36160
17-03-17 22:15:40.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:15:40.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:15:40.378 -07 000000576 INF: FPGA: Recv ZSGSRD 36161
17-03-17 22:15:40.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:15:40.388 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:15:40.388 -07 000000623 INF: FPGA: Recv ZPIEZORD 32233
17-03-17 22:15:40.398 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:15:40.398 -07 000000610 INF: Z Motor: Piezo is near 48.9 V (nominally 0 to 100 V), expect near 57.5 V, since DAC is at 5.754 V. Piezo Error = -8.7 V.
17-03-17 22:15:40.398 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.6 um, Read 10 ADC samples: Avg = 36160 (-171.7 uncal um), Error = 0.9 uncal um, Median = 36160 (-171.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36154 (-171.7 uncal um), Max = 36165 (-171.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 22:15:40.398 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36160, posNoise = 5, negNoise = 6
17-03-17 22:15:40.398 -07 000000610 INF: Z Motor: After move to -0.172607, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:15:40.398 -07 000000610 INF: Z Motor: MoveAbsStepped took 326 ms)
17-03-17 22:15:40.398 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:15:40.398 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:15:40.398 -07 000000448 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:15:40.398 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:15:40.398 -07 000000623 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:15:40.398 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:15:40.398 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 22:15:40.398 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:15:40.398 -07 000000448 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:15:40.398 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:15:40.408 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:15:40.408 -07 000000448 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-17 22:15:40.408 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:15:40.408 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:15:40.418 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 22:15:40.418 -07 000000623 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 22:15:40.428 -07 000000448 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 21 ms.
17-03-17 22:15:40.428 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:15:40.428 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:15:40.428 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:15:40.438 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-17 22:15:40.438 -07 000000448 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 38 ms.
17-03-17 22:15:40.438 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 448 448 215 215 37883 150\n [Camera]
17-03-17 22:15:40.638 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:15:41.088 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 640
17-03-17 22:15:41.088 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 640
17-03-17 22:15:41.088 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:15:41.098 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 640
17-03-17 22:15:41.098 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:15:41.098 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 640
17-03-17 22:15:41.098 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 1479623496, 0x0, 391868352) start.
17-03-17 22:15:41.098 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:15:41.208 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:15:41.208 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 22:15:41.288 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37883 833
17-03-17 22:15:41.438 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP turning grn on 985
17-03-17 22:15:41.488 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 1479623496, 0x0, 391868352) end. Duration was 389 ms.
17-03-17 22:15:41.488 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 22:15:41.488 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:15:41.488 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:15:41.488 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 22:15:41.588 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 385 ms.
17-03-17 22:15:41.588 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-17 22:15:41.588 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:15:41.598 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:15:41.598 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 506 ms.
17-03-17 22:15:41.648 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1198
17-03-17 22:15:41.648 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1198
17-03-17 22:15:41.648 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:15:41.648 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1198
17-03-17 22:15:41.648 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1198
17-03-17 22:15:41.648 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:15:41.658 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:15:41.658 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 1406045800, 0x0, 391868352) start.
17-03-17 22:15:41.658 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:15:41.658 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) start.
17-03-17 22:15:41.838 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP 1391
17-03-17 22:15:41.838 -07 000000448 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:15:41.838 -07 000000610 INF: FPGA: 'CAMDBLSNAP 448 448 215 215 37883 150' command took 2 ms to send, 1387 ms to get response, and 1398 ms overall
17-03-17 22:15:41.838 -07 000000610 INF: Skipping AutoFocus in Tile 2: adopting Best-Z from the cache: -0.172884
17-03-17 22:15:41.838 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.17288 mm
17-03-17 22:15:41.838 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:15:41.848 -07 000000448 INF: Z Motor: Entering MoveAbsStepped (DAC = 37767, sync = True, waitForSettling = False)
17-03-17 22:15:41.848 -07 000000448 INF: Z Motor: Moving to -0.172886 mm, started at -0.172623 mm, distance = -0.26 um
17-03-17 22:15:41.848 -07 000000448 INF: FPGA: Xmit ZDACW 37767\n [Z Motor]
17-03-17 22:15:41.848 -07 000000012 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-17 22:15:41.848 -07 000000012 INF: Y Motor: Moving to 60.7426 mm, started at 59.9102 mm, delta = 0.8325 mm
17-03-17 22:15:41.848 -07 000000431 INF: FPGA: Recv ZDACW
17-03-17 22:15:41.858 -07 000000448 INF: FPGA: 'ZDACW 37767' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:15:41.858 -07 000000448 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:15:41.858 -07 000000431 INF: FPGA: Recv ZDACR 37767
17-03-17 22:15:41.868 -07 000000448 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:15:41.868 -07 000000448 INF: Z Motor: MoveAbsStepped took 17 ms (did NOT wait for settling yet))
17-03-17 22:15:41.868 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:15:41.868 -07 000000627 INF: FPGA: Recv YRDPOS 122696
17-03-17 22:15:41.878 -07 000000012 INF: FPGA: 'YRDPOS' command took 3 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 22:15:41.878 -07 000000012 INF: Y Motor: Encoder = 122696 = motor step 95856.3 = 59.9102 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:15:41.878 -07 000000012 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:15:41.878 -07 000000012 INF: Y Motor: Moving 1332 steps2
17-03-17 22:15:41.878 -07 000000012 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:15:41.958 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:15:41.958 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 60. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=959, R2=982, Total=1941. Warn if over 250 bubbles per interval.
17-03-17 22:15:42.058 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 1406045800, 0x0, 391868352) end. Duration was 401 ms.
17-03-17 22:15:42.058 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 22:15:42.058 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:15:42.058 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) end. Duration was 399 ms.
17-03-17 22:15:42.058 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 22:15:42.058 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:15:42.068 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:15:42.068 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 414 ms.
17-03-17 22:15:42.068 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:15:42.068 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 418 ms.
17-03-17 22:15:42.248 -07 000000569 INF: FPGA: Recv YMVTILE
17-03-17 22:15:42.248 -07 000000012 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 378 ms overall
17-03-17 22:15:42.288 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:15:42.288 -07 000000618 INF: FPGA: Recv YRDPOS 124380
17-03-17 22:15:42.298 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:15:42.298 -07 000000012 INF: Y Motor: Encoder = 124380 = motor step 97171.9 = 60.7324 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:15:42.298 -07 000000012 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-17 22:15:42.298 -07 000000012 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.832 mm, average velocity = 2.202 mm/sec
17-03-17 22:15:43.248 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:15:43.248 -07 000000627 INF: FPGA: Recv YRDPOS 124381
17-03-17 22:15:43.258 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:15:43.258 -07 000000012 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:15:43.278 -07 000000012 INF: Y Motor: After move to 60.742607, error = -0.009697, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:15:43.278 -07 000000012 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 22:15:43.278 -07 000000012 INF: Y Motor: Moved to 60.7329 after 1432 ms (table move)
17-03-17 22:15:43.278 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172886 mm (DAC = 37767)
17-03-17 22:15:43.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:15:43.288 -07 000000569 INF: FPGA: Recv ZSGSRD 36208
17-03-17 22:15:43.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 22:15:43.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:15:43.288 -07 000000627 INF: FPGA: Recv ZSGSRD 36203
17-03-17 22:15:43.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:15:43.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:15:43.298 -07 000000627 INF: FPGA: Recv ZSGSRD 36206
17-03-17 22:15:43.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:15:43.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:15:43.308 -07 000000627 INF: FPGA: Recv ZSGSRD 36202
17-03-17 22:15:43.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:15:43.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:15:43.318 -07 000000627 INF: FPGA: Recv ZSGSRD 36203
17-03-17 22:15:43.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:15:43.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:15:43.328 -07 000000627 INF: FPGA: Recv ZSGSRD 36206
17-03-17 22:15:43.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:15:43.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:15:43.338 -07 000000627 INF: FPGA: Recv ZSGSRD 36197
17-03-17 22:15:43.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:15:43.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:15:43.348 -07 000000012 INF: FPGA: Recv ZSGSRD 36199
17-03-17 22:15:43.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:15:43.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:15:43.358 -07 000000627 INF: FPGA: Recv ZSGSRD 36200
17-03-17 22:15:43.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:15:43.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:15:43.368 -07 000000627 INF: FPGA: Recv ZSGSRD 36206
17-03-17 22:15:43.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:15:43.378 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:15:43.378 -07 000000012 INF: FPGA: Recv ZPIEZORD 32363
17-03-17 22:15:43.388 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:15:43.388 -07 000000610 INF: Z Motor: Piezo is near 49.1 V (nominally 0 to 100 V), expect near 57.6 V, since DAC is at 5.763 V. Piezo Error = -8.5 V.
17-03-17 22:15:43.388 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.9 um, Read 10 ADC samples: Avg = 36203 (-172.0 uncal um), Error = 0.9 uncal um, Median = 36203 (-172.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36197 (-172.0 uncal um), Max = 36208 (-172.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 22:15:43.388 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36203, posNoise = 5, negNoise = 6
17-03-17 22:15:43.388 -07 000000610 INF: Z Motor: After move to -0.172886, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:15:43.388 -07 000000610 INF: Z Motor: Settle wait time = 1435 ms, measure time = 103 ms (allowed 150 ms), total time = 1538 ms
17-03-17 22:15:43.388 -07 000000610 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 22:15:43.438 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1590 ms
17-03-17 22:15:43.438 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:15:43.438 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.73291015625, Z-position -0.172899104179307. ----------
17-03-17 22:15:43.438 -07 000000610 INF: Cycle	61	Tile	2	Exposure Settings		A	448	G	215	T	215	C	448
17-03-17 22:15:43.438 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37590, sync = True, waitForSettling = True)
17-03-17 22:15:43.438 -07 000000610 INF: Z Motor: Moving to -0.172076 mm, started at -0.172899 mm, distance = 0.82 um
17-03-17 22:15:43.438 -07 000000610 INF: FPGA: Xmit ZDACW 37590\n [Z Motor]
17-03-17 22:15:43.438 -07 000000623 INF: FPGA: Recv ZDACW
17-03-17 22:15:43.448 -07 000000610 INF: FPGA: 'ZDACW 37590' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 22:15:43.448 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:15:43.448 -07 000000429 INF: FPGA: Recv ZDACR 37590
17-03-17 22:15:43.458 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:15:43.458 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:15:43.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:15:43.608 -07 000000431 INF: FPGA: Recv ZSGSRD 36080
17-03-17 22:15:43.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:15:43.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:15:43.618 -07 000000429 INF: FPGA: Recv ZSGSRD 36080
17-03-17 22:15:43.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:15:43.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:15:43.628 -07 000000429 INF: FPGA: Recv ZSGSRD 36075
17-03-17 22:15:43.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:15:43.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:15:43.638 -07 000000431 INF: FPGA: Recv ZSGSRD 36077
17-03-17 22:15:43.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:15:43.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:15:43.648 -07 000000627 INF: FPGA: Recv ZSGSRD 36081
17-03-17 22:15:43.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:15:43.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:15:43.658 -07 000000576 INF: FPGA: Recv ZSGSRD 36079
17-03-17 22:15:43.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:15:43.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:15:43.668 -07 000000627 INF: FPGA: Recv ZSGSRD 36071
17-03-17 22:15:43.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:15:43.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:15:43.678 -07 000000429 INF: FPGA: Recv ZSGSRD 36075
17-03-17 22:15:43.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:15:43.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:15:43.688 -07 000000429 INF: FPGA: Recv ZSGSRD 36078
17-03-17 22:15:43.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:15:43.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:15:43.698 -07 000000627 INF: FPGA: Recv ZSGSRD 36078
17-03-17 22:15:43.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:15:43.708 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:15:43.708 -07 000000429 INF: FPGA: Recv ZPIEZORD 32194
17-03-17 22:15:43.718 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:15:43.718 -07 000000610 INF: Z Motor: Piezo is near 48.8 V (nominally 0 to 100 V), expect near 57.4 V, since DAC is at 5.736 V. Piezo Error = -8.6 V.
17-03-17 22:15:43.718 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.1 um, Read 10 ADC samples: Avg = 36077 (-171.2 uncal um), Error = 0.9 uncal um, Median = 36078 (-171.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 36071 (-171.2 uncal um), Max = 36081 (-171.2 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 22:15:43.718 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36077, posNoise = 4, negNoise = 6
17-03-17 22:15:43.718 -07 000000610 INF: Z Motor: After move to -0.172076, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:15:43.718 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 22:15:43.718 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:15:43.718 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:15:43.718 -07 000000478 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:15:43.718 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:15:43.718 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:15:43.718 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:15:43.718 -07 000000623 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:15:43.718 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:15:43.718 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:15:43.718 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:15:43.718 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:15:43.718 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:15:43.718 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 22:15:43.718 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:15:43.728 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:15:43.728 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:15:43.738 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 22:15:43.738 -07 000000623 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 22:15:43.738 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 22:15:43.738 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 22:15:43.738 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 448 448 215 215 37767 150\n [Camera]
17-03-17 22:15:43.938 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:15:44.388 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 640
17-03-17 22:15:44.388 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 640
17-03-17 22:15:44.388 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:15:44.388 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:15:44.388 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 22:15:44.398 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 640
17-03-17 22:15:44.398 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 640
17-03-17 22:15:44.398 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:15:44.398 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:15:44.398 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-17 22:15:44.588 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37767 833
17-03-17 22:15:44.638 -07 000000478 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 61, FrontChillerTemperature: 3.978563,
17-03-17 22:15:44.788 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 400 ms.
17-03-17 22:15:44.788 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 22:15:44.788 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:15:44.798 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 400 ms.
17-03-17 22:15:44.798 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 22:15:44.798 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:15:44.798 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:15:44.798 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 22:15:44.798 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:15:44.808 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-17 22:15:44.808 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning grn on 986
17-03-17 22:15:44.948 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1198
17-03-17 22:15:44.948 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1198
17-03-17 22:15:44.948 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:15:44.948 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:15:44.948 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-17 22:15:44.948 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1198
17-03-17 22:15:44.948 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1198
17-03-17 22:15:44.948 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:15:44.948 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:15:44.948 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-17 22:15:45.468 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 404 ms.
17-03-17 22:15:45.468 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 521 ms.
17-03-17 22:15:45.468 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:15:45.468 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 518 ms.
17-03-17 22:15:45.468 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 520 ms.
17-03-17 22:15:45.468 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:15:45.478 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:15:45.478 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 527 ms.
17-03-17 22:15:45.478 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:15:45.488 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 531 ms.
17-03-17 22:15:45.488 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP 1391
17-03-17 22:15:45.488 -07 000000012 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:15:45.488 -07 000000610 INF: FPGA: 'CAMDBLSNAP 448 448 215 215 37767 150' command took 2 ms to send, 1733 ms to get response, and 1744 ms overall
17-03-17 22:15:45.488 -07 000000610 INF: Skipping AutoFocus in Tile 3: adopting Best-Z from the cache: -0.172364
17-03-17 22:15:45.488 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.17236 mm
17-03-17 22:15:45.488 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:15:45.488 -07 000000012 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-17 22:15:45.488 -07 000000012 INF: Y Motor: Moving to 61.5726 mm, started at 60.7329 mm, delta = 0.8397 mm
17-03-17 22:15:45.488 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:15:45.498 -07 000000618 INF: Z Motor: Entering MoveAbsStepped (DAC = 37653, sync = True, waitForSettling = False)
17-03-17 22:15:45.498 -07 000000618 INF: Z Motor: Moving to -0.172364 mm, started at -0.172090 mm, distance = -0.27 um
17-03-17 22:15:45.498 -07 000000618 INF: FPGA: Xmit ZDACW 37653\n [Z Motor]
17-03-17 22:15:46.408 -07 000000478 INF: FPGA: Recv YRDPOS 124381
17-03-17 22:15:46.408 -07 000000478 INF: FPGA: Recv ZDACW
17-03-17 22:15:46.408 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 910 ms to get response, and 912 ms overall
17-03-17 22:15:46.408 -07 000000012 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:15:46.408 -07 000000012 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:15:46.408 -07 000000012 INF: Y Motor: Moving 1344 steps-21
17-03-17 22:15:46.408 -07 000000618 INF: FPGA: 'ZDACW 37653' command took 0 ms to send, 900 ms to get response, and 909 ms overall
17-03-17 22:15:46.418 -07 000000012 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:15:46.428 -07 000000618 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:15:46.428 -07 000000478 INF: FPGA: Recv ZDACR 37653
17-03-17 22:15:46.438 -07 000000618 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-17 22:15:46.438 -07 000000618 INF: Z Motor: MoveAbsStepped took 939 ms (did NOT wait for settling yet))
17-03-17 22:15:46.788 -07 000000618 INF: FPGA: Recv YMVTILE
17-03-17 22:15:46.788 -07 000000012 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 386 ms overall
17-03-17 22:15:46.828 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:15:46.838 -07 000000569 INF: FPGA: Recv YRDPOS 126081
17-03-17 22:15:46.838 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 6 ms overall
17-03-17 22:15:46.838 -07 000000012 INF: Y Motor: Encoder = 126081 = motor step 98500.8 = 61.5630 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:15:46.838 -07 000000012 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-17 22:15:46.838 -07 000000012 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 386 ms, distance = 0.840 mm, average velocity = 2.175 mm/sec
17-03-17 22:15:46.958 -07 000000429 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:15:46.958 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 60. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=959, R2=982, Total=1941. Warn if over 250 bubbles per interval.
17-03-17 22:15:47.788 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:15:47.788 -07 000000623 INF: FPGA: Recv YRDPOS 126082
17-03-17 22:15:47.798 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:15:47.798 -07 000000012 INF: Y Motor: Encoder = 126082 = motor step 98501.6 = 61.5635 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:15:47.818 -07 000000012 INF: Y Motor: After move to 61.572609, error = -0.009132, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:15:47.818 -07 000000012 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 22:15:47.818 -07 000000012 INF: Y Motor: Moved to 61.5635 after 2327 ms (table move)
17-03-17 22:15:47.818 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172364 mm (DAC = 37653)
17-03-17 22:15:47.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:15:47.828 -07 000000478 INF: FPGA: Recv ZSGSRD 36121
17-03-17 22:15:47.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 22:15:47.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:15:47.828 -07 000000012 INF: FPGA: Recv ZSGSRD 36124
17-03-17 22:15:47.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:15:47.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:15:47.838 -07 000000012 INF: FPGA: Recv ZSGSRD 36116
17-03-17 22:15:47.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:15:47.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:15:47.848 -07 000000012 INF: FPGA: Recv ZSGSRD 36125
17-03-17 22:15:47.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:15:47.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:15:47.858 -07 000000012 INF: FPGA: Recv ZSGSRD 36128
17-03-17 22:15:47.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:15:47.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:15:47.868 -07 000000012 INF: FPGA: Recv ZSGSRD 36126
17-03-17 22:15:47.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:15:47.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:15:47.878 -07 000000012 INF: FPGA: Recv ZSGSRD 36123
17-03-17 22:15:47.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:15:47.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:15:47.888 -07 000000012 INF: FPGA: Recv ZSGSRD 36121
17-03-17 22:15:47.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:15:47.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:15:47.898 -07 000000012 INF: FPGA: Recv ZSGSRD 36118
17-03-17 22:15:47.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:15:47.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:15:47.908 -07 000000012 INF: FPGA: Recv ZSGSRD 36112
17-03-17 22:15:47.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:15:47.918 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:15:47.918 -07 000000012 INF: FPGA: Recv ZPIEZORD 32265
17-03-17 22:15:47.928 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:15:47.928 -07 000000610 INF: Z Motor: Piezo is near 48.9 V (nominally 0 to 100 V), expect near 57.5 V, since DAC is at 5.745 V. Piezo Error = -8.5 V.
17-03-17 22:15:47.928 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.4 um, Read 10 ADC samples: Avg = 36121 (-171.5 uncal um), Error = 0.9 uncal um, Median = 36122 (-171.5 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 36112 (-171.4 uncal um), Max = 36128 (-171.5 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 22:15:47.928 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36121, posNoise = 7, negNoise = 9
17-03-17 22:15:47.928 -07 000000610 INF: Z Motor: After move to -0.172364, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:15:47.928 -07 000000610 INF: Z Motor: Settle wait time = 2327 ms, measure time = 102 ms (allowed 150 ms), total time = 2429 ms
17-03-17 22:15:47.928 -07 000000610 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 22:15:47.978 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2484 ms
17-03-17 22:15:47.978 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:15:47.978 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.5634765625, Z-position -0.172372318783683. ----------
17-03-17 22:15:47.978 -07 000000610 INF: Cycle	61	Tile	3	Exposure Settings		A	448	G	215	T	215	C	448
17-03-17 22:15:47.978 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37476, sync = True, waitForSettling = True)
17-03-17 22:15:47.978 -07 000000610 INF: Z Motor: Moving to -0.171554 mm, started at -0.172372 mm, distance = 0.82 um
17-03-17 22:15:47.978 -07 000000610 INF: FPGA: Xmit ZDACW 37476\n [Z Motor]
17-03-17 22:15:47.978 -07 000000623 INF: FPGA: Recv ZDACW
17-03-17 22:15:47.988 -07 000000610 INF: FPGA: 'ZDACW 37476' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 22:15:47.988 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:15:47.988 -07 000000623 INF: FPGA: Recv ZDACR 37476
17-03-17 22:15:47.998 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:15:47.998 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:15:48.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:15:48.148 -07 000000618 INF: FPGA: Recv ZSGSRD 35994
17-03-17 22:15:48.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:15:48.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:15:48.158 -07 000000576 INF: FPGA: Recv ZSGSRD 35995
17-03-17 22:15:48.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:15:48.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:15:48.168 -07 000000431 INF: FPGA: Recv ZSGSRD 35999
17-03-17 22:15:48.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:15:48.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:15:48.178 -07 000000012 INF: FPGA: Recv ZSGSRD 35997
17-03-17 22:15:48.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:15:48.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:15:48.188 -07 000000623 INF: FPGA: Recv ZSGSRD 35996
17-03-17 22:15:48.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:15:48.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:15:48.198 -07 000000012 INF: FPGA: Recv ZSGSRD 35995
17-03-17 22:15:48.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:15:48.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:15:48.208 -07 000000618 INF: FPGA: Recv ZSGSRD 35992
17-03-17 22:15:48.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:15:48.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:15:48.218 -07 000000623 INF: FPGA: Recv ZSGSRD 35992
17-03-17 22:15:48.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:15:48.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:15:48.228 -07 000000576 INF: FPGA: Recv ZSGSRD 35988
17-03-17 22:15:48.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:15:48.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:15:48.238 -07 000000627 INF: FPGA: Recv ZSGSRD 35996
17-03-17 22:15:48.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:15:48.248 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:15:48.248 -07 000000448 INF: FPGA: Recv ZPIEZORD 32117
17-03-17 22:15:48.258 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:15:48.258 -07 000000610 INF: Z Motor: Piezo is near 48.6 V (nominally 0 to 100 V), expect near 57.2 V, since DAC is at 5.718 V. Piezo Error = -8.6 V.
17-03-17 22:15:48.258 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.6 um, Read 10 ADC samples: Avg = 35994 (-170.7 uncal um), Error = 0.9 uncal um, Median = 35995 (-170.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35988 (-170.6 uncal um), Max = 35999 (-170.7 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 22:15:48.258 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35994, posNoise = 5, negNoise = 6
17-03-17 22:15:48.258 -07 000000610 INF: Z Motor: After move to -0.171554, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:15:48.258 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 22:15:48.258 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:15:48.258 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:15:48.258 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:15:48.258 -07 000000429 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:15:48.258 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:15:48.258 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:15:48.258 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:15:48.258 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:15:48.258 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:15:48.258 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:15:48.258 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:15:48.258 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:15:48.258 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 22:15:48.258 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:15:48.268 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:15:48.268 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:15:48.268 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 22:15:48.268 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 22:15:48.278 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 22:15:48.278 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 22:15:48.278 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 448 448 215 215 37653 150\n [Camera]
17-03-17 22:15:48.478 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:15:48.928 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 640
17-03-17 22:15:48.928 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 640
17-03-17 22:15:48.928 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:15:48.928 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:15:48.928 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 22:15:48.928 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 640
17-03-17 22:15:48.928 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 640
17-03-17 22:15:48.928 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:15:48.928 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:15:48.928 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 1406045800, 0x0, 418435064) start.
17-03-17 22:15:49.118 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37653 833
17-03-17 22:15:49.268 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP turning grn on 983
17-03-17 22:15:49.308 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 379 ms.
17-03-17 22:15:49.308 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 22:15:49.308 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:15:49.308 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 1406045800, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 22:15:49.308 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-17 22:15:49.308 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:15:49.308 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:15:49.308 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 22:15:49.318 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:15:49.318 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 22:15:49.478 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1198
17-03-17 22:15:49.478 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1198
17-03-17 22:15:49.488 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:15:49.488 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:15:49.488 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 1441468064, 0x0, 391868352) start.
17-03-17 22:15:49.488 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1198
17-03-17 22:15:49.488 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1198
17-03-17 22:15:49.488 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:15:49.488 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:15:49.488 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 1476890328, 0x0, 418435064) start.
17-03-17 22:15:49.678 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP 1390
17-03-17 22:15:49.678 -07 000000012 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:15:49.678 -07 000000610 INF: FPGA: 'CAMDBLSNAP 448 448 215 215 37653 150' command took 2 ms to send, 1391 ms to get response, and 1397 ms overall
17-03-17 22:15:49.678 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 22:15:49.678 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.5634765625, Z-Position -0.171556443841679. ------
17-03-17 22:15:49.678 -07 000000448 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:15:49.678 -07 000000478 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.17790 mm
17-03-17 22:15:49.678 -07 000000478 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:15:49.688 -07 000000462 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-17 22:15:49.688 -07 000000462 INF: Y Motor: Moving to 62.4026 mm, started at 61.5635 mm, delta = 0.8391 mm
17-03-17 22:15:49.688 -07 000000429 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:15:49.688 -07 000000448 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:15:49.688 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:15:49.688 -07 000000618 INF: Z Motor: Entering MoveAbsStepped (DAC = 38862, sync = True, waitForSettling = False)
17-03-17 22:15:49.688 -07 000000618 INF: Z Motor: Moving to -0.177899 mm, started at -0.171556 mm, distance = -6.34 um
17-03-17 22:15:49.688 -07 000000569 INF: FPGA: Recv YRDPOS 126082
17-03-17 22:15:49.698 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:15:49.698 -07 000000462 INF: Y Motor: Encoder = 126082 = motor step 98501.6 = 61.5635 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:15:49.698 -07 000000462 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:15:49.698 -07 000000462 INF: Y Motor: Moving 1343 steps-20
17-03-17 22:15:49.698 -07 000000448 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:15:49.708 -07 000000618 INF: FPGA: Xmit ZDACW 38862\n [Z Motor]
17-03-17 22:15:49.718 -07 000000462 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:15:49.868 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 1441468064, 0x0, 391868352) end. Duration was 386 ms.
17-03-17 22:15:49.868 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 22:15:49.868 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:15:49.868 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 1476890328, 0x0, 418435064) end. Duration was 384 ms.
17-03-17 22:15:49.868 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-17 22:15:49.868 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:15:49.878 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:15:49.878 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 22:15:49.878 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:15:49.888 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 22:15:50.668 -07 000000627 INF: FPGA: Recv ZDACW
17-03-17 22:15:50.668 -07 000000627 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:15:50.668 -07 000000627 INF: FPGA: Recv YMVTILE
17-03-17 22:15:50.668 -07 000000618 INF: FPGA: 'ZDACW 38862' command took 0 ms to send, 950 ms to get response, and 979 ms overall
17-03-17 22:15:50.668 -07 000000462 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 941 ms to get response, and 970 ms overall
17-03-17 22:15:50.668 -07 000000448 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 961 ms to get response, and 980 ms overall
17-03-17 22:15:50.668 -07 000000618 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:15:50.668 -07 000000627 INF: FPGA: Recv ZDACR 38862
17-03-17 22:15:50.678 -07 000000618 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:15:50.678 -07 000000618 INF: Z Motor: MoveAbsStepped took 988 ms (did NOT wait for settling yet))
17-03-17 22:15:50.708 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:15:50.708 -07 000000627 INF: FPGA: Recv YRDPOS 127785
17-03-17 22:15:50.718 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:15:50.718 -07 000000462 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:15:50.718 -07 000000462 INF: Y Motor: Position error before settling (table move) = -16 encoder counts (-0.008 mm)
17-03-17 22:15:50.718 -07 000000462 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 971 ms, distance = 0.839 mm, average velocity = 0.864 mm/sec
17-03-17 22:15:50.978 -07 000000448 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 61, FrontChillerTemperature: 3.999021,
17-03-17 22:15:51.668 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:15:51.668 -07 000000576 INF: FPGA: Recv YRDPOS 127785
17-03-17 22:15:51.678 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:15:51.678 -07 000000462 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:15:51.698 -07 000000462 INF: Y Motor: After move to 62.402607, error = -0.007587, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:15:51.698 -07 000000462 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:15:51.698 -07 000000462 INF: Y Motor: Moved to 62.3950 after 2015 ms (table move)
17-03-17 22:15:51.698 -07 000000478 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177899 mm (DAC = 38862)
17-03-17 22:15:51.698 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:15:51.708 -07 000000569 INF: FPGA: Recv ZSGSRD 36978
17-03-17 22:15:51.708 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 22:15:51.708 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:15:51.708 -07 000000627 INF: FPGA: Recv ZSGSRD 36980
17-03-17 22:15:51.718 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:15:51.718 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:15:51.718 -07 000000627 INF: FPGA: Recv ZSGSRD 36988
17-03-17 22:15:51.728 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:15:51.728 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:15:51.728 -07 000000429 INF: FPGA: Recv ZSGSRD 36982
17-03-17 22:15:51.738 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:15:51.738 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:15:51.738 -07 000000627 INF: FPGA: Recv ZSGSRD 36981
17-03-17 22:15:51.748 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:15:51.748 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:15:51.748 -07 000000462 INF: FPGA: Recv ZSGSRD 36981
17-03-17 22:15:51.758 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:15:51.758 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:15:51.758 -07 000000627 INF: FPGA: Recv ZSGSRD 36982
17-03-17 22:15:51.768 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:15:51.768 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:15:51.768 -07 000000448 INF: FPGA: Recv ZSGSRD 36985
17-03-17 22:15:51.778 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:15:51.788 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:15:51.788 -07 000000462 INF: FPGA: Recv ZSGSRD 36986
17-03-17 22:15:51.798 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:15:51.808 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:15:51.808 -07 000000576 INF: FPGA: Recv ZSGSRD 36987
17-03-17 22:15:51.818 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:15:51.828 -07 000000478 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:15:51.828 -07 000000462 INF: FPGA: Recv ZPIEZORD 33441
17-03-17 22:15:51.838 -07 000000478 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:15:51.838 -07 000000478 INF: Z Motor: Piezo is near 51.4 V (nominally 0 to 100 V), expect near 59.3 V, since DAC is at 5.930 V. Piezo Error = -7.9 V.
17-03-17 22:15:51.838 -07 000000478 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.9 um, Read 10 ADC samples: Avg = 36983 (-177.0 uncal um), Error = 0.9 uncal um, Median = 36982 (-177.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 36978 (-177.0 uncal um), Max = 36988 (-177.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 22:15:51.838 -07 000000478 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36983, posNoise = 5, negNoise = 5
17-03-17 22:15:51.838 -07 000000478 INF: Z Motor: After move to -0.177899, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:15:51.838 -07 000000478 INF: Z Motor: Settle wait time = 2017 ms, measure time = 131 ms (allowed 150 ms), total time = 2148 ms
17-03-17 22:15:51.838 -07 000000478 INF: Z Motor: Waiting extra 19 ms after reading position to reach expected total of 150 ms
17-03-17 22:15:51.858 -07 000000478 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2172 ms
17-03-17 22:15:51.858 -07 000000478 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:15:51.858 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:15:51.858 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:15:51.858 -07 000000448 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:15:51.858 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:15:51.858 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:15:51.858 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:15:51.858 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 22:15:51.858 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:15:51.858 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:15:51.858 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:15:51.868 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 22:15:51.868 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 22:15:51.868 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:15:51.918 -07 000000012 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:15:51.958 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:15:51.958 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 60. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=959, R2=982, Total=1941. Warn if over 250 bubbles per interval.
17-03-17 22:15:52.118 -07 000000012 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:15:52.118 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:15:52.118 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:15:52.118 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 592128816, 0x0, 559484976) start.
17-03-17 22:15:52.158 -07 000000462 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:15:52.158 -07 000000569 INF: FPGA: Recv CAMSNAP
17-03-17 22:15:52.158 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 274 ms to get response, and 284 ms overall
17-03-17 22:15:52.238 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 592128816, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 22:15:52.238 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:15:52.238 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:15:52.238 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 22:15:52.258 -07 000000429 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:15:52.258 -07 000000012 INF: Autofocus start
17-03-17 22:15:52.258 -07 000000012 INF: MeasureProfile start
17-03-17 22:15:52.258 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:15:52.268 -07 000000429 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:15:52.268 -07 000000429 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:15:52.268 -07 000000012 INF: MeasureProfile done
17-03-17 22:15:52.268 -07 000000012 INF: X=-16  Z correction [um]=-0.1496812
17-03-17 22:15:52.268 -07 000000012 INF: Autofocus finished
17-03-17 22:15:52.468 -07 000000478 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:15:52.468 -07 000000429 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:15:52.468 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.39501953125, Z-position -0.17790998964988. ----------
17-03-17 22:15:52.468 -07 000000610 INF: Cycle	61	Tile	4	Exposure Settings		A	448	G	215	T	215	C	448
17-03-17 22:15:52.478 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37342, sync = True, waitForSettling = True)
17-03-17 22:15:52.478 -07 000000610 INF: Z Motor: Moving to -0.170941 mm, started at -0.177910 mm, distance = 6.97 um
17-03-17 22:15:52.478 -07 000000610 INF: FPGA: Xmit ZDACW 37342\n [Z Motor]
17-03-17 22:15:52.478 -07 000000627 INF: FPGA: Recv ZDACW
17-03-17 22:15:52.488 -07 000000610 INF: FPGA: 'ZDACW 37342' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:15:52.488 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:15:52.488 -07 000000462 INF: FPGA: Recv ZDACR 37342
17-03-17 22:15:52.498 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:15:52.498 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:15:52.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:15:52.648 -07 000000448 INF: FPGA: Recv ZSGSRD 35904
17-03-17 22:15:52.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:15:52.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:15:52.658 -07 000000462 INF: FPGA: Recv ZSGSRD 35901
17-03-17 22:15:52.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:15:52.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:15:52.668 -07 000000448 INF: FPGA: Recv ZSGSRD 35894
17-03-17 22:15:52.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:15:52.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:15:52.678 -07 000000462 INF: FPGA: Recv ZSGSRD 35898
17-03-17 22:15:52.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:15:52.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:15:52.688 -07 000000462 INF: FPGA: Recv ZSGSRD 35902
17-03-17 22:15:52.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:15:52.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:15:52.698 -07 000000462 INF: FPGA: Recv ZSGSRD 35904
17-03-17 22:15:52.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:15:52.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:15:52.708 -07 000000012 INF: FPGA: Recv ZSGSRD 35904
17-03-17 22:15:52.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:15:52.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:15:52.718 -07 000000448 INF: FPGA: Recv ZSGSRD 35897
17-03-17 22:15:52.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:15:52.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:15:52.728 -07 000000448 INF: FPGA: Recv ZSGSRD 35899
17-03-17 22:15:52.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:15:52.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:15:52.738 -07 000000448 INF: FPGA: Recv ZSGSRD 35900
17-03-17 22:15:52.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:15:52.748 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:15:52.748 -07 000000448 INF: FPGA: Recv ZPIEZORD 31960
17-03-17 22:15:52.758 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:15:52.758 -07 000000610 INF: Z Motor: Piezo is near 48.3 V (nominally 0 to 100 V), expect near 57.0 V, since DAC is at 5.698 V. Piezo Error = -8.7 V.
17-03-17 22:15:52.758 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.9 um, Read 10 ADC samples: Avg = 35900 (-170.1 uncal um), Error = 0.9 uncal um, Median = 35900 (-170.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35894 (-170.0 uncal um), Max = 35904 (-170.1 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 22:15:52.758 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35900, posNoise = 4, negNoise = 6
17-03-17 22:15:52.758 -07 000000610 INF: Z Motor: After move to -0.170941, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:15:52.758 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 22:15:52.758 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:15:52.758 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:15:52.758 -07 000000429 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:15:52.758 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:15:52.758 -07 000000623 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:15:52.758 -07 000000478 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:15:52.758 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:15:52.758 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:15:52.758 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 22:15:52.758 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:15:52.758 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-17 22:15:52.758 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:15:52.768 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 22:15:52.768 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:15:52.768 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:15:52.768 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:15:52.768 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 22:15:52.768 -07 000000623 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 22:15:52.778 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 22:15:52.778 -07 000000478 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 22:15:52.778 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 448 448 215 215 37519 150\n [Camera]
17-03-17 22:15:52.978 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:15:53.428 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 640
17-03-17 22:15:53.428 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 640
17-03-17 22:15:53.428 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:15:53.428 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:15:53.428 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 2164362856, 0x0, 391868352) start.
17-03-17 22:15:53.428 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 640
17-03-17 22:15:53.428 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 640
17-03-17 22:15:53.428 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:15:53.428 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:15:53.428 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2199785120, 0x0, 418435064) start.
17-03-17 22:15:53.618 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37519 833
17-03-17 22:15:53.768 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning grn on 983
17-03-17 22:15:53.828 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 2164362856, 0x0, 391868352) end. Duration was 397 ms.
17-03-17 22:15:53.828 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 22:15:53.828 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:15:53.828 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2199785120, 0x0, 418435064) end. Duration was 398 ms.
17-03-17 22:15:53.828 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 22:15:53.828 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:15:53.828 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:15:53.828 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 22:15:53.828 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:15:53.838 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-17 22:15:53.978 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1198
17-03-17 22:15:53.978 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1198
17-03-17 22:15:53.988 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:15:54.098 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1198
17-03-17 22:15:54.098 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1198
17-03-17 22:15:54.098 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:15:54.098 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:15:54.098 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 2235207384, 0x0, 391868352) start.
17-03-17 22:15:54.108 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:15:54.108 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2164362856, 0x0, 418435064) start.
17-03-17 22:15:54.178 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP 1391
17-03-17 22:15:54.178 -07 000000448 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:15:54.178 -07 000000610 INF: FPGA: 'CAMDBLSNAP 448 448 215 215 37519 150' command took 2 ms to send, 1392 ms to get response, and 1398 ms overall
17-03-17 22:15:54.178 -07 000000610 INF: Skipping AutoFocus in Tile 5: adopting Best-Z from the cache: -0.171536
17-03-17 22:15:54.178 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.17154 mm
17-03-17 22:15:54.178 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:15:54.178 -07 000000569 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-17 22:15:54.178 -07 000000569 INF: Y Motor: Moving to 63.2326 mm, started at 62.3950 mm, delta = 0.8376 mm
17-03-17 22:15:54.178 -07 000000012 INF: Z Motor: Entering MoveAbsStepped (DAC = 37472, sync = True, waitForSettling = False)
17-03-17 22:15:54.178 -07 000000012 INF: Z Motor: Moving to -0.171536 mm, started at -0.170953 mm, distance = -0.58 um
17-03-17 22:15:54.178 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:15:54.178 -07 000000448 INF: FPGA: Recv YRDPOS 127785
17-03-17 22:15:54.188 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:15:54.188 -07 000000012 INF: FPGA: Xmit ZDACW 37472\n [Z Motor]
17-03-17 22:15:54.188 -07 000000569 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:15:54.188 -07 000000569 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:15:54.188 -07 000000569 INF: Y Motor: Moving 1340 steps-16
17-03-17 22:15:54.188 -07 000000448 INF: FPGA: Recv ZDACW
17-03-17 22:15:54.198 -07 000000012 INF: FPGA: 'ZDACW 37472' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 22:15:54.198 -07 000000569 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:15:54.208 -07 000000012 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:15:54.208 -07 000000448 INF: FPGA: Recv ZDACR 37472
17-03-17 22:15:54.218 -07 000000012 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:15:54.218 -07 000000012 INF: Z Motor: MoveAbsStepped took 33 ms (did NOT wait for settling yet))
17-03-17 22:15:54.508 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 2235207384, 0x0, 391868352) end. Duration was 403 ms.
17-03-17 22:15:54.508 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2164362856, 0x0, 418435064) end. Duration was 396 ms.
17-03-17 22:15:54.508 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 22:15:54.508 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:15:54.508 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 22:15:54.508 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:15:54.508 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:15:54.508 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 523 ms.
17-03-17 22:15:54.508 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:15:54.518 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-17 22:15:54.568 -07 000000478 INF: FPGA: Recv YMVTILE
17-03-17 22:15:54.568 -07 000000569 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-17 22:15:54.608 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:15:54.608 -07 000000012 INF: FPGA: Recv YRDPOS 129481
17-03-17 22:15:54.618 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 22:15:54.618 -07 000000569 INF: Y Motor: Encoder = 129481 = motor step 101157.0 = 63.2231 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:15:54.618 -07 000000569 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-17 22:15:54.618 -07 000000569 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.838 mm, average velocity = 2.164 mm/sec
17-03-17 22:15:55.568 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:15:55.568 -07 000000627 INF: FPGA: Recv YRDPOS 129482
17-03-17 22:15:55.578 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:15:55.578 -07 000000569 INF: Y Motor: Encoder = 129482 = motor step 101157.8 = 63.2236 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:15:55.598 -07 000000569 INF: Y Motor: After move to 63.232609, error = -0.008976, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:15:55.598 -07 000000569 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 22:15:55.598 -07 000000569 INF: Y Motor: Moved to 63.2236 after 1418 ms (table move)
17-03-17 22:15:55.598 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.171536 mm (DAC = 37472)
17-03-17 22:15:55.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:15:55.608 -07 000000431 INF: FPGA: Recv ZSGSRD 35994
17-03-17 22:15:55.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-17 22:15:55.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:15:55.608 -07 000000431 INF: FPGA: Recv ZSGSRD 35997
17-03-17 22:15:55.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:15:55.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:15:55.618 -07 000000431 INF: FPGA: Recv ZSGSRD 35996
17-03-17 22:15:55.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:15:55.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:15:55.628 -07 000000448 INF: FPGA: Recv ZSGSRD 35993
17-03-17 22:15:55.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:15:55.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:15:55.638 -07 000000448 INF: FPGA: Recv ZSGSRD 35990
17-03-17 22:15:55.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:15:55.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:15:55.648 -07 000000012 INF: FPGA: Recv ZSGSRD 36000
17-03-17 22:15:55.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:15:55.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:15:55.658 -07 000000012 INF: FPGA: Recv ZSGSRD 35996
17-03-17 22:15:55.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:15:55.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:15:55.668 -07 000000012 INF: FPGA: Recv ZSGSRD 35991
17-03-17 22:15:55.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:15:55.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:15:55.678 -07 000000012 INF: FPGA: Recv ZSGSRD 35988
17-03-17 22:15:55.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:15:55.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:15:55.688 -07 000000012 INF: FPGA: Recv ZSGSRD 35988
17-03-17 22:15:55.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:15:55.698 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:15:55.698 -07 000000012 INF: FPGA: Recv ZPIEZORD 32092
17-03-17 22:15:55.708 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:15:55.708 -07 000000610 INF: Z Motor: Piezo is near 48.6 V (nominally 0 to 100 V), expect near 57.2 V, since DAC is at 5.718 V. Piezo Error = -8.6 V.
17-03-17 22:15:55.708 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.5 um, Read 10 ADC samples: Avg = 35993 (-170.7 uncal um), Error = 0.9 uncal um, Median = 35994 (-170.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35988 (-170.6 uncal um), Max = 36000 (-170.7 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 22:15:55.708 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35993, posNoise = 7, negNoise = 5
17-03-17 22:15:55.708 -07 000000610 INF: Z Motor: After move to -0.171536, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:15:55.708 -07 000000610 INF: Z Motor: Settle wait time = 1422 ms, measure time = 102 ms (allowed 150 ms), total time = 1524 ms
17-03-17 22:15:55.708 -07 000000610 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 22:15:55.758 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1575 ms
17-03-17 22:15:55.758 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:15:55.758 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.2236328125, Z-position -0.171550019629537. ----------
17-03-17 22:15:55.758 -07 000000610 INF: Cycle	61	Tile	5	Exposure Settings		A	448	G	215	T	215	C	448
17-03-17 22:15:55.758 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37295, sync = True, waitForSettling = True)
17-03-17 22:15:55.758 -07 000000610 INF: Z Motor: Moving to -0.170726 mm, started at -0.171550 mm, distance = 0.82 um
17-03-17 22:15:55.758 -07 000000610 INF: FPGA: Xmit ZDACW 37295\n [Z Motor]
17-03-17 22:15:55.758 -07 000000478 INF: FPGA: Recv ZDACW
17-03-17 22:15:55.768 -07 000000610 INF: FPGA: 'ZDACW 37295' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 22:15:55.768 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:15:55.768 -07 000000623 INF: FPGA: Recv ZDACR 37295
17-03-17 22:15:55.778 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:15:55.778 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:15:55.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:15:55.928 -07 000000618 INF: FPGA: Recv ZSGSRD 35869
17-03-17 22:15:55.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:15:55.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:15:55.938 -07 000000569 INF: FPGA: Recv ZSGSRD 35862
17-03-17 22:15:55.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:15:55.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:15:55.948 -07 000000448 INF: FPGA: Recv ZSGSRD 35869
17-03-17 22:15:55.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:15:55.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:15:55.958 -07 000000561 INF: FPGA: Recv ZSGSRD 35862
17-03-17 22:15:55.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:15:55.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:15:55.968 -07 000000012 INF: FPGA: Recv ZSGSRD 35867
17-03-17 22:15:55.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:15:55.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:15:55.978 -07 000000486 INF: FPGA: Recv ZSGSRD 35874
17-03-17 22:15:55.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:15:55.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:15:55.988 -07 000000448 INF: FPGA: Recv ZSGSRD 35862
17-03-17 22:15:55.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:15:55.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:15:55.998 -07 000000561 INF: FPGA: Recv ZSGSRD 35857
17-03-17 22:15:56.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:15:56.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:15:56.008 -07 000000462 INF: FPGA: Recv ZSGSRD 35867
17-03-17 22:15:56.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:15:56.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:15:56.028 -07 000000561 INF: FPGA: Recv ZSGSRD 35868
17-03-17 22:15:56.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:15:56.038 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:15:56.038 -07 000000431 INF: FPGA: Recv ZPIEZORD 31883
17-03-17 22:15:56.048 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:15:56.048 -07 000000610 INF: Z Motor: Piezo is near 48.1 V (nominally 0 to 100 V), expect near 56.9 V, since DAC is at 5.691 V. Piezo Error = -8.8 V.
17-03-17 22:15:56.048 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.7 um, Read 10 ADC samples: Avg = 35866 (-169.9 uncal um), Error = 0.9 uncal um, Median = 35867 (-169.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 35857 (-169.8 uncal um), Max = 35874 (-169.9 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 22:15:56.048 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35866, posNoise = 8, negNoise = 9
17-03-17 22:15:56.048 -07 000000610 INF: Z Motor: After move to -0.170726, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:15:56.048 -07 000000610 INF: Z Motor: MoveAbsStepped took 286 ms)
17-03-17 22:15:56.048 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:15:56.048 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:15:56.048 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:15:56.048 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:15:56.048 -07 000000448 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:15:56.048 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:15:56.048 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:15:56.048 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:15:56.048 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:15:56.048 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:15:56.048 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:15:56.048 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:15:56.048 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 22:15:56.058 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:15:56.058 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 22:15:56.058 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:15:56.068 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 22:15:56.068 -07 000000448 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 22:15:56.068 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 22:15:56.068 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 22:15:56.068 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 448 448 215 215 37472 150\n [Camera]
17-03-17 22:15:56.268 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:15:56.338 -07 000000431 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 61, FrontChillerTemperature: 4.015368,
17-03-17 22:15:56.718 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 640
17-03-17 22:15:56.718 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 640
17-03-17 22:15:56.718 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:15:56.728 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 640
17-03-17 22:15:56.728 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 640
17-03-17 22:15:56.728 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:15:56.728 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:15:56.728 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 22:15:56.728 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:15:56.728 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2199785120, 0x0, 391868352) start.
17-03-17 22:15:56.908 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37472 833
17-03-17 22:15:56.958 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:15:56.958 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 60. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=959, R2=982, Total=1941. Warn if over 250 bubbles per interval.
17-03-17 22:15:57.068 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP turning grn on 986
17-03-17 22:15:57.108 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 377 ms.
17-03-17 22:15:57.108 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-17 22:15:57.108 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:15:57.108 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:15:57.118 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 22:15:57.118 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2199785120, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 22:15:57.118 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 22:15:57.118 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:15:57.118 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:15:57.118 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 22:15:57.278 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1198
17-03-17 22:15:57.278 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1198
17-03-17 22:15:57.278 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:15:57.278 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:15:57.278 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1406045800, 0x0, 391868352) start.
17-03-17 22:15:57.278 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1198
17-03-17 22:15:57.278 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1198
17-03-17 22:15:57.278 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:15:57.398 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:15:57.398 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 22:15:57.468 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP 1391
17-03-17 22:15:57.468 -07 000000627 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:15:57.468 -07 000000610 INF: FPGA: 'CAMDBLSNAP 448 448 215 215 37472 150' command took 2 ms to send, 1386 ms to get response, and 1397 ms overall
17-03-17 22:15:57.468 -07 000000610 INF: Skipping AutoFocus in Tile 6: adopting Best-Z from the cache: -0.171125
17-03-17 22:15:57.468 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.17112 mm
17-03-17 22:15:57.468 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:15:57.478 -07 000000623 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-17 22:15:57.478 -07 000000623 INF: Y Motor: Moving to 64.0626 mm, started at 63.2236 mm, delta = 0.8390 mm
17-03-17 22:15:57.478 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:15:57.478 -07 000000448 INF: Z Motor: Entering MoveAbsStepped (DAC = 37382, sync = True, waitForSettling = False)
17-03-17 22:15:57.478 -07 000000448 INF: Z Motor: Moving to -0.171124 mm, started at -0.170734 mm, distance = -0.39 um
17-03-17 22:15:57.478 -07 000000431 INF: FPGA: Recv YRDPOS 129482
17-03-17 22:15:57.488 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:15:57.488 -07 000000623 INF: Y Motor: Encoder = 129482 = motor step 101157.8 = 63.2236 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:15:57.488 -07 000000448 INF: FPGA: Xmit ZDACW 37382\n [Z Motor]
17-03-17 22:15:57.488 -07 000000623 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:15:57.488 -07 000000623 INF: Y Motor: Moving 1342 steps-19
17-03-17 22:15:57.488 -07 000000429 INF: FPGA: Recv ZDACW
17-03-17 22:15:57.498 -07 000000448 INF: FPGA: 'ZDACW 37382' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-17 22:15:57.498 -07 000000448 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:15:57.498 -07 000000431 INF: FPGA: Recv ZDACR 37382
17-03-17 22:15:57.508 -07 000000623 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:15:57.508 -07 000000448 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:15:57.508 -07 000000448 INF: Z Motor: MoveAbsStepped took 27 ms (did NOT wait for settling yet))
17-03-17 22:15:57.678 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1406045800, 0x0, 391868352) end. Duration was 402 ms.
17-03-17 22:15:57.678 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 22:15:57.678 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:15:57.688 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:15:57.688 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-17 22:15:57.798 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 399 ms.
17-03-17 22:15:57.798 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 22:15:57.798 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:15:57.798 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:15:57.808 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 525 ms.
17-03-17 22:15:57.878 -07 000000627 INF: FPGA: Recv YMVTILE
17-03-17 22:15:57.878 -07 000000623 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 22:15:57.918 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:15:57.918 -07 000000448 INF: FPGA: Recv YRDPOS 131188
17-03-17 22:15:57.928 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 22:15:57.928 -07 000000623 INF: Y Motor: Encoder = 131188 = motor step 102490.6 = 64.0566 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:15:57.928 -07 000000623 INF: Y Motor: Position error before settling (table move) = -12 encoder counts (-0.006 mm)
17-03-17 22:15:57.928 -07 000000623 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.839 mm, average velocity = 2.113 mm/sec
17-03-17 22:15:58.878 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:15:58.878 -07 000000627 INF: FPGA: Recv YRDPOS 131188
17-03-17 22:15:58.888 -07 000000623 INF: FPGA: 'YRDPOS' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:15:58.888 -07 000000623 INF: Y Motor: Encoder = 131188 = motor step 102490.6 = 64.0566 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:15:58.908 -07 000000623 INF: Y Motor: After move to 64.062607, error = -0.005966, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:15:58.908 -07 000000623 INF: Y Motor: Position error after settling (table move) = -12 encoder counts (-0.006 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:15:58.908 -07 000000623 INF: Y Motor: Moved to 64.0566 after 1430 ms (table move)
17-03-17 22:15:58.908 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.171124 mm (DAC = 37382)
17-03-17 22:15:58.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:15:58.908 -07 000000448 INF: FPGA: Recv ZSGSRD 35928
17-03-17 22:15:58.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 22:15:58.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:15:58.918 -07 000000627 INF: FPGA: Recv ZSGSRD 35925
17-03-17 22:15:58.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:15:58.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:15:58.928 -07 000000561 INF: FPGA: Recv ZSGSRD 35935
17-03-17 22:15:58.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:15:58.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:15:58.938 -07 000000462 INF: FPGA: Recv ZSGSRD 35924
17-03-17 22:15:58.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:15:58.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:15:58.948 -07 000000448 INF: FPGA: Recv ZSGSRD 35928
17-03-17 22:15:58.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:15:58.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:15:58.958 -07 000000431 INF: FPGA: Recv ZSGSRD 35934
17-03-17 22:15:58.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:15:58.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:15:58.968 -07 000000623 INF: FPGA: Recv ZSGSRD 35930
17-03-17 22:15:58.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:15:58.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:15:58.978 -07 000000448 INF: FPGA: Recv ZSGSRD 35930
17-03-17 22:15:58.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:15:58.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:15:58.988 -07 000000462 INF: FPGA: Recv ZSGSRD 35918
17-03-17 22:15:58.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:15:58.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:15:58.998 -07 000000627 INF: FPGA: Recv ZSGSRD 35930
17-03-17 22:15:59.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:15:59.008 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:15:59.008 -07 000000561 INF: FPGA: Recv ZPIEZORD 31970
17-03-17 22:15:59.018 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:15:59.018 -07 000000610 INF: Z Motor: Piezo is near 48.3 V (nominally 0 to 100 V), expect near 57.0 V, since DAC is at 5.704 V. Piezo Error = -8.7 V.
17-03-17 22:15:59.018 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.1 um, Read 10 ADC samples: Avg = 35928 (-170.3 uncal um), Error = 0.9 uncal um, Median = 35929 (-170.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 35918 (-170.2 uncal um), Max = 35935 (-170.3 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-17 22:15:59.018 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35928, posNoise = 7, negNoise = 10
17-03-17 22:15:59.018 -07 000000610 INF: Z Motor: After move to -0.171124, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:15:59.018 -07 000000610 INF: Z Motor: Settle wait time = 1432 ms, measure time = 106 ms (allowed 150 ms), total time = 1538 ms
17-03-17 22:15:59.018 -07 000000610 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 22:15:59.068 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1590 ms
17-03-17 22:15:59.068 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:15:59.068 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.056640625, Z-position -0.171132445840323. ----------
17-03-17 22:15:59.068 -07 000000610 INF: Cycle	61	Tile	6	Exposure Settings		A	448	G	215	T	215	C	448
17-03-17 22:15:59.068 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37206, sync = True, waitForSettling = True)
17-03-17 22:15:59.068 -07 000000610 INF: Z Motor: Moving to -0.170318 mm, started at -0.171132 mm, distance = 0.81 um
17-03-17 22:15:59.068 -07 000000610 INF: FPGA: Xmit ZDACW 37206\n [Z Motor]
17-03-17 22:15:59.068 -07 000000462 INF: FPGA: Recv ZDACW
17-03-17 22:15:59.078 -07 000000610 INF: FPGA: 'ZDACW 37206' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 22:15:59.078 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:15:59.078 -07 000000627 INF: FPGA: Recv ZDACR 37206
17-03-17 22:15:59.088 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:15:59.088 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:15:59.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:15:59.238 -07 000000551 INF: FPGA: Recv ZSGSRD 35803
17-03-17 22:15:59.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:15:59.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:15:59.248 -07 000000627 INF: FPGA: Recv ZSGSRD 35805
17-03-17 22:15:59.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:15:59.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:15:59.258 -07 000000551 INF: FPGA: Recv ZSGSRD 35807
17-03-17 22:15:59.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:15:59.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:15:59.268 -07 000000627 INF: FPGA: Recv ZSGSRD 35805
17-03-17 22:15:59.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:15:59.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:15:59.278 -07 000000561 INF: FPGA: Recv ZSGSRD 35804
17-03-17 22:15:59.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:15:59.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:15:59.288 -07 000000429 INF: FPGA: Recv ZSGSRD 35795
17-03-17 22:15:59.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:15:59.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:15:59.298 -07 000000561 INF: FPGA: Recv ZSGSRD 35799
17-03-17 22:15:59.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:15:59.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:15:59.308 -07 000000448 INF: FPGA: Recv ZSGSRD 35804
17-03-17 22:15:59.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:15:59.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:15:59.318 -07 000000561 INF: FPGA: Recv ZSGSRD 35802
17-03-17 22:15:59.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:15:59.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:15:59.328 -07 000000623 INF: FPGA: Recv ZSGSRD 35804
17-03-17 22:15:59.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:15:59.338 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:15:59.338 -07 000000462 INF: FPGA: Recv ZPIEZORD 31790
17-03-17 22:15:59.348 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:15:59.348 -07 000000610 INF: Z Motor: Piezo is near 47.9 V (nominally 0 to 100 V), expect near 56.8 V, since DAC is at 5.677 V. Piezo Error = -8.9 V.
17-03-17 22:15:59.348 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.3 um, Read 10 ADC samples: Avg = 35803 (-169.5 uncal um), Error = 0.9 uncal um, Median = 35804 (-169.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35795 (-169.4 uncal um), Max = 35807 (-169.5 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 22:15:59.348 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35803, posNoise = 4, negNoise = 8
17-03-17 22:15:59.348 -07 000000610 INF: Z Motor: After move to -0.170318, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:15:59.348 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 22:15:59.348 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:15:59.348 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:15:59.348 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:15:59.348 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:15:59.348 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:15:59.348 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:15:59.348 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:15:59.348 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:15:59.348 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:15:59.348 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:15:59.348 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:15:59.348 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:15:59.348 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:15:59.358 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:15:59.358 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 22:15:59.358 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:15:59.368 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 22:15:59.368 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 22:15:59.368 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 22:15:59.368 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 22:15:59.368 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 448 448 215 215 37382 150\n [Camera]
17-03-17 22:15:59.568 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:16:00.018 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 640
17-03-17 22:16:00.018 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 640
17-03-17 22:16:00.018 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:16:00.018 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:16:00.018 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 1441468064, 0x0, 391868352) start.
17-03-17 22:16:00.018 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 640
17-03-17 22:16:00.018 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 640
17-03-17 22:16:00.028 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:16:00.028 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:16:00.028 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 1476890328, 0x0, 418435064) start.
17-03-17 22:16:00.208 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37382 833
17-03-17 22:16:00.368 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning grn on 983
17-03-17 22:16:00.398 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 1441468064, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 22:16:00.398 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-17 22:16:00.398 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:16:00.398 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 1476890328, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 22:16:00.398 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 22:16:00.398 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:16:00.398 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:16:00.398 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 22:16:00.408 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:16:00.408 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 22:16:00.578 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1198
17-03-17 22:16:00.578 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1198
17-03-17 22:16:00.578 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:16:00.578 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:16:00.578 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2164362856, 0x0, 391868352) start.
17-03-17 22:16:00.578 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1198
17-03-17 22:16:00.578 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1198
17-03-17 22:16:00.578 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:16:00.578 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:16:00.578 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 2199785120, 0x0, 418435064) start.
17-03-17 22:16:00.768 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP 1391
17-03-17 22:16:00.768 -07 000000627 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:16:00.768 -07 000000610 INF: FPGA: 'CAMDBLSNAP 448 448 215 215 37382 150' command took 2 ms to send, 1386 ms to get response, and 1398 ms overall
17-03-17 22:16:00.768 -07 000000610 INF: Skipping AutoFocus in Tile 7: adopting Best-Z from the cache: -0.170794
17-03-17 22:16:00.768 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.17079 mm
17-03-17 22:16:00.768 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:16:00.778 -07 000000429 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-17 22:16:00.778 -07 000000429 INF: Y Motor: Moving to 64.8926 mm, started at 64.0566 mm, delta = 0.8360 mm
17-03-17 22:16:00.778 -07 000000551 INF: Z Motor: Entering MoveAbsStepped (DAC = 37310, sync = True, waitForSettling = False)
17-03-17 22:16:00.778 -07 000000551 INF: Z Motor: Moving to -0.170794 mm, started at -0.170329 mm, distance = -0.46 um
17-03-17 22:16:00.778 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:16:00.778 -07 000000623 INF: FPGA: Recv YRDPOS 131188
17-03-17 22:16:00.788 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:16:00.788 -07 000000429 INF: Y Motor: Encoder = 131188 = motor step 102490.6 = 64.0566 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:16:00.788 -07 000000429 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:16:00.788 -07 000000429 INF: Y Motor: Moving 1338 steps-12
17-03-17 22:16:00.788 -07 000000551 INF: FPGA: Xmit ZDACW 37310\n [Z Motor]
17-03-17 22:16:00.788 -07 000000623 INF: FPGA: Recv ZDACW
17-03-17 22:16:00.798 -07 000000551 INF: FPGA: 'ZDACW 37310' command took 1 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 22:16:00.798 -07 000000551 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:16:00.798 -07 000000627 INF: FPGA: Recv ZDACR 37310
17-03-17 22:16:00.808 -07 000000429 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:16:00.808 -07 000000551 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:00.808 -07 000000551 INF: Z Motor: MoveAbsStepped took 27 ms (did NOT wait for settling yet))
17-03-17 22:16:00.968 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 2199785120, 0x0, 418435064) end. Duration was 382 ms.
17-03-17 22:16:00.968 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-17 22:16:00.968 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:16:00.968 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2164362856, 0x0, 391868352) end. Duration was 387 ms.
17-03-17 22:16:00.968 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 22:16:00.968 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:16:00.968 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:16:00.968 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:16:00.968 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 22:16:00.978 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 22:16:01.178 -07 000000623 INF: FPGA: Recv YMVTILE
17-03-17 22:16:01.178 -07 000000429 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 22:16:01.228 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:16:01.228 -07 000000448 INF: FPGA: Recv YRDPOS 132871
17-03-17 22:16:01.238 -07 000000429 INF: FPGA: 'YRDPOS' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:01.238 -07 000000429 INF: Y Motor: Encoder = 132871 = motor step 103805.5 = 64.8784 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:16:01.238 -07 000000429 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-17 22:16:01.238 -07 000000429 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.836 mm, average velocity = 2.100 mm/sec
17-03-17 22:16:01.698 -07 000000448 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 61, FrontChillerTemperature: 3.989471,
17-03-17 22:16:01.958 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:16:01.958 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 60. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=959, R2=982, Total=1941. Warn if over 250 bubbles per interval.
17-03-17 22:16:02.188 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:16:02.188 -07 000000448 INF: FPGA: Recv YRDPOS 132871
17-03-17 22:16:02.198 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:16:02.198 -07 000000429 INF: Y Motor: Encoder = 132871 = motor step 103805.5 = 64.8784 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:16:02.218 -07 000000429 INF: Y Motor: After move to 64.892609, error = -0.014191, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:16:02.218 -07 000000429 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:16:02.218 -07 000000429 INF: Y Motor: Moved to 64.8784 after 1443 ms (table move)
17-03-17 22:16:02.218 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.170794 mm (DAC = 37310)
17-03-17 22:16:02.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:02.228 -07 000000431 INF: FPGA: Recv ZSGSRD 35876
17-03-17 22:16:02.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 22:16:02.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:02.238 -07 000000431 INF: FPGA: Recv ZSGSRD 35874
17-03-17 22:16:02.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:02.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:02.248 -07 000000431 INF: FPGA: Recv ZSGSRD 35880
17-03-17 22:16:02.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:02.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:02.258 -07 000000478 INF: FPGA: Recv ZSGSRD 35880
17-03-17 22:16:02.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:02.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:02.268 -07 000000478 INF: FPGA: Recv ZSGSRD 35881
17-03-17 22:16:02.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:02.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:02.278 -07 000000431 INF: FPGA: Recv ZSGSRD 35882
17-03-17 22:16:02.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:16:02.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:02.288 -07 000000431 INF: FPGA: Recv ZSGSRD 35872
17-03-17 22:16:02.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:02.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:02.298 -07 000000448 INF: FPGA: Recv ZSGSRD 35867
17-03-17 22:16:02.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:02.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:02.308 -07 000000623 INF: FPGA: Recv ZSGSRD 35879
17-03-17 22:16:02.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:02.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:02.318 -07 000000429 INF: FPGA: Recv ZSGSRD 35881
17-03-17 22:16:02.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:02.328 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:16:02.328 -07 000000431 INF: FPGA: Recv ZPIEZORD 31956
17-03-17 22:16:02.338 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:02.338 -07 000000610 INF: Z Motor: Piezo is near 48.3 V (nominally 0 to 100 V), expect near 56.9 V, since DAC is at 5.693 V. Piezo Error = -8.7 V.
17-03-17 22:16:02.338 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.8 um, Read 10 ADC samples: Avg = 35877 (-169.9 uncal um), Error = 0.9 uncal um, Median = 35880 (-169.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 35867 (-169.9 uncal um), Max = 35882 (-170.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-17 22:16:02.338 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35877, posNoise = 5, negNoise = 10
17-03-17 22:16:02.338 -07 000000610 INF: Z Motor: After move to -0.170794, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:16:02.338 -07 000000610 INF: Z Motor: Settle wait time = 1445 ms, measure time = 112 ms (allowed 150 ms), total time = 1557 ms
17-03-17 22:16:02.338 -07 000000610 INF: Z Motor: Waiting extra 38 ms after reading position to reach expected total of 150 ms
17-03-17 22:16:02.378 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1601 ms
17-03-17 22:16:02.378 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:16:02.378 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87841796875, Z-position -0.170804811021093. ----------
17-03-17 22:16:02.378 -07 000000610 INF: Cycle	61	Tile	7	Exposure Settings		A	448	G	215	T	215	C	448
17-03-17 22:16:02.378 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37133, sync = True, waitForSettling = True)
17-03-17 22:16:02.378 -07 000000610 INF: Z Motor: Moving to -0.169984 mm, started at -0.170805 mm, distance = 0.82 um
17-03-17 22:16:02.378 -07 000000610 INF: FPGA: Xmit ZDACW 37133\n [Z Motor]
17-03-17 22:16:02.378 -07 000000561 INF: FPGA: Recv ZDACW
17-03-17 22:16:02.388 -07 000000610 INF: FPGA: 'ZDACW 37133' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 22:16:02.388 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:16:02.388 -07 000000448 INF: FPGA: Recv ZDACR 37133
17-03-17 22:16:02.398 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:02.398 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:16:02.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:02.548 -07 000000448 INF: FPGA: Recv ZSGSRD 35755
17-03-17 22:16:02.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:16:02.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:02.558 -07 000000627 INF: FPGA: Recv ZSGSRD 35760
17-03-17 22:16:02.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:02.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:02.578 -07 000000561 INF: FPGA: Recv ZSGSRD 35750
17-03-17 22:16:02.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:16:02.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:02.588 -07 000000429 INF: FPGA: Recv ZSGSRD 35750
17-03-17 22:16:02.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:02.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:02.618 -07 000000462 INF: FPGA: Recv ZSGSRD 35745
17-03-17 22:16:02.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:16:02.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:02.628 -07 000000627 INF: FPGA: Recv ZSGSRD 35747
17-03-17 22:16:02.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:02.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:02.638 -07 000000561 INF: FPGA: Recv ZSGSRD 35743
17-03-17 22:16:02.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:02.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:02.648 -07 000000561 INF: FPGA: Recv ZSGSRD 35756
17-03-17 22:16:02.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:02.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:02.658 -07 000000431 INF: FPGA: Recv ZSGSRD 35750
17-03-17 22:16:02.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:02.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:02.668 -07 000000462 INF: FPGA: Recv ZSGSRD 35746
17-03-17 22:16:02.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:02.678 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:16:02.678 -07 000000623 INF: FPGA: Recv ZPIEZORD 31739
17-03-17 22:16:02.688 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:02.688 -07 000000610 INF: Z Motor: Piezo is near 47.8 V (nominally 0 to 100 V), expect near 56.7 V, since DAC is at 5.666 V. Piezo Error = -8.9 V.
17-03-17 22:16:02.688 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.0 um, Read 10 ADC samples: Avg = 35750 (-169.1 uncal um), Error = 0.9 uncal um, Median = 35750 (-169.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 35743 (-169.1 uncal um), Max = 35760 (-169.2 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 22:16:02.688 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35750, posNoise = 10, negNoise = 7
17-03-17 22:16:02.688 -07 000000610 INF: Z Motor: After move to -0.169984, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:16:02.688 -07 000000610 INF: Z Motor: MoveAbsStepped took 306 ms)
17-03-17 22:16:02.688 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:16:02.688 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:16:02.688 -07 000000429 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:16:02.688 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:16:02.688 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:16:02.688 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:16:02.688 -07 000000448 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:16:02.688 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:16:02.688 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:16:02.688 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:16:02.688 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:16:02.688 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:16:02.698 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:16:02.698 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:16:02.698 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:16:02.698 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:16:02.708 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 22:16:02.708 -07 000000448 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 22:16:02.708 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 22:16:02.708 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 22:16:02.718 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 448 448 215 215 37310 150\n [Camera]
17-03-17 22:16:02.908 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:16:03.358 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 640
17-03-17 22:16:03.358 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 640
17-03-17 22:16:03.358 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:16:03.358 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:16:03.358 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 2235207384, 0x0, 391868352) start.
17-03-17 22:16:03.368 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 640
17-03-17 22:16:03.368 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 640
17-03-17 22:16:03.368 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:16:03.368 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:16:03.368 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-17 22:16:03.558 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37310 833
17-03-17 22:16:03.708 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP turning grn on 983
17-03-17 22:16:03.738 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 2235207384, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 22:16:03.738 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 22:16:03.738 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:16:03.748 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 376 ms.
17-03-17 22:16:03.748 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 22:16:03.748 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:16:03.748 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:16:03.748 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 22:16:03.748 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:16:03.758 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 22:16:03.918 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1198
17-03-17 22:16:03.918 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1198
17-03-17 22:16:03.918 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:16:03.918 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:16:03.918 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start.
17-03-17 22:16:03.918 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1198
17-03-17 22:16:03.918 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1198
17-03-17 22:16:03.918 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:16:03.918 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:16:03.918 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) start.
17-03-17 22:16:04.108 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP 1391
17-03-17 22:16:04.108 -07 000000431 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:16:04.108 -07 000000610 INF: FPGA: 'CAMDBLSNAP 448 448 215 215 37310 150' command took 2 ms to send, 1387 ms to get response, and 1397 ms overall
17-03-17 22:16:04.118 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 22:16:04.118 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.87841796875, Z-Position -0.169988936079089. ------
17-03-17 22:16:04.118 -07 000000627 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:16:04.118 -07 000000431 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.17644 mm
17-03-17 22:16:04.118 -07 000000431 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:16:04.118 -07 000000618 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-17 22:16:04.118 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:16:04.118 -07 000000623 INF: Z Motor: Entering MoveAbsStepped (DAC = 38543, sync = True, waitForSettling = False)
17-03-17 22:16:04.118 -07 000000623 INF: Z Motor: Moving to -0.176439 mm, started at -0.169989 mm, distance = -6.45 um
17-03-17 22:16:04.118 -07 000000618 INF: Y Motor: Moving to 65.7226 mm, started at 64.8784 mm, delta = 0.8442 mm
17-03-17 22:16:04.128 -07 000000627 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 22:16:04.128 -07 000000623 INF: FPGA: Xmit ZDACW 38543\n [Z Motor]
17-03-17 22:16:04.128 -07 000000561 INF: FPGA: Recv ZDACW
17-03-17 22:16:04.138 -07 000000627 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:16:04.138 -07 000000623 INF: FPGA: 'ZDACW 38543' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:16:04.148 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:16:04.148 -07 000000486 INF: FPGA: Recv YRDPOS 132871
17-03-17 22:16:04.158 -07 000000623 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:16:04.158 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-17 22:16:04.158 -07 000000618 INF: Y Motor: Encoder = 132871 = motor step 103805.5 = 64.8784 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:16:04.158 -07 000000618 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:16:04.158 -07 000000618 INF: Y Motor: Moving 1351 steps-29
17-03-17 22:16:04.158 -07 000000561 INF: FPGA: Recv ZDACR 38543
17-03-17 22:16:04.168 -07 000000618 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:16:04.168 -07 000000623 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:16:04.168 -07 000000623 INF: Z Motor: MoveAbsStepped took 41 ms (did NOT wait for settling yet))
17-03-17 22:16:04.308 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) end. Duration was 384 ms.
17-03-17 22:16:04.308 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-17 22:16:04.308 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:16:04.308 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 387 ms.
17-03-17 22:16:04.308 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 22:16:04.308 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:16:04.318 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 22:16:04.318 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:16:04.318 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 22:16:04.318 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 22:16:04.338 -07 000000462 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:16:04.338 -07 000000627 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 196 ms to get response, and 215 ms overall
17-03-17 22:16:04.538 -07 000000448 INF: FPGA: Recv YMVTILE
17-03-17 22:16:04.538 -07 000000618 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-17 22:16:04.588 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:16:04.588 -07 000000012 INF: FPGA: Recv YRDPOS 134581
17-03-17 22:16:04.598 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:16:04.598 -07 000000618 INF: Y Motor: Encoder = 134581 = motor step 105141.4 = 65.7134 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:16:04.598 -07 000000618 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-17 22:16:04.598 -07 000000618 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.844 mm, average velocity = 2.181 mm/sec
17-03-17 22:16:05.548 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:16:05.548 -07 000000627 INF: FPGA: Recv YRDPOS 134581
17-03-17 22:16:05.558 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:16:05.558 -07 000000618 INF: Y Motor: Encoder = 134581 = motor step 105141.4 = 65.7134 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:16:05.578 -07 000000618 INF: Y Motor: After move to 65.722610, error = -0.009232, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:16:05.588 -07 000000618 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:16:05.588 -07 000000618 INF: Y Motor: Moved to 65.7134 after 1461 ms (table move)
17-03-17 22:16:05.588 -07 000000431 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176439 mm (DAC = 38543)
17-03-17 22:16:05.588 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:05.588 -07 000000618 INF: FPGA: Recv ZSGSRD 36758
17-03-17 22:16:05.598 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:16:05.598 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:05.598 -07 000000618 INF: FPGA: Recv ZSGSRD 36760
17-03-17 22:16:05.608 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:05.608 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:05.608 -07 000000569 INF: FPGA: Recv ZSGSRD 36755
17-03-17 22:16:05.618 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:05.618 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:05.618 -07 000000618 INF: FPGA: Recv ZSGSRD 36751
17-03-17 22:16:05.628 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:05.628 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:05.628 -07 000000618 INF: FPGA: Recv ZSGSRD 36755
17-03-17 22:16:05.638 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:05.638 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:05.638 -07 000000429 INF: FPGA: Recv ZSGSRD 36751
17-03-17 22:16:05.648 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:05.648 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:05.648 -07 000000429 INF: FPGA: Recv ZSGSRD 36749
17-03-17 22:16:05.658 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:05.658 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:05.658 -07 000000561 INF: FPGA: Recv ZSGSRD 36754
17-03-17 22:16:05.668 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:05.668 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:05.668 -07 000000561 INF: FPGA: Recv ZSGSRD 36760
17-03-17 22:16:05.678 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:05.678 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:05.678 -07 000000429 INF: FPGA: Recv ZSGSRD 36758
17-03-17 22:16:05.688 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:05.688 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:16:05.688 -07 000000561 INF: FPGA: Recv ZPIEZORD 33133
17-03-17 22:16:05.698 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:05.698 -07 000000431 INF: Z Motor: Piezo is near 50.8 V (nominally 0 to 100 V), expect near 58.8 V, since DAC is at 5.881 V. Piezo Error = -8.0 V.
17-03-17 22:16:05.698 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.4 um, Read 10 ADC samples: Avg = 36755 (-175.6 uncal um), Error = 0.9 uncal um, Median = 36755 (-175.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36749 (-175.5 uncal um), Max = 36760 (-175.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 22:16:05.698 -07 000000431 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36755, posNoise = 5, negNoise = 6
17-03-17 22:16:05.698 -07 000000431 INF: Z Motor: After move to -0.176439, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:16:05.698 -07 000000431 INF: Z Motor: Settle wait time = 1464 ms, measure time = 107 ms (allowed 150 ms), total time = 1571 ms
17-03-17 22:16:05.698 -07 000000431 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 22:16:05.748 -07 000000431 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1624 ms
17-03-17 22:16:05.748 -07 000000431 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:16:05.748 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:16:05.748 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:16:05.748 -07 000000623 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:16:05.748 -07 000000448 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:16:05.748 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:16:05.748 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:16:05.748 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:16:05.748 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:16:05.758 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 22:16:05.758 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:16:05.768 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 22:16:05.768 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-17 22:16:05.768 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:16:05.808 -07 000000431 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:16:06.008 -07 000000431 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:16:06.008 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:16:06.008 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:16:06.138 -07 000000486 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:16:06.138 -07 000000486 INF: FPGA: Recv CAMSNAP
17-03-17 22:16:06.138 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 360 ms to get response, and 367 ms overall
17-03-17 22:16:06.138 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591997688, 0x0, 559484976) start.
17-03-17 22:16:06.258 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591997688, 0x0, 559484976) end. Duration was 125 ms.
17-03-17 22:16:06.258 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:16:06.258 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:16:06.258 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 248 ms.
17-03-17 22:16:06.338 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:16:06.338 -07 000000623 INF: Autofocus start
17-03-17 22:16:06.338 -07 000000623 INF: MeasureProfile start
17-03-17 22:16:06.338 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:16:06.348 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:16:06.348 -07 000000431 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:16:06.348 -07 000000623 INF: MeasureProfile done
17-03-17 22:16:06.348 -07 000000623 INF: X=-16  Z correction [um]=-0.1496812
17-03-17 22:16:06.348 -07 000000623 INF: Autofocus finished
17-03-17 22:16:06.548 -07 000000486 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:16:06.548 -07 000000431 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:16:06.548 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.71337890625, Z-position -0.176445269281559. ----------
17-03-17 22:16:06.548 -07 000000610 INF: Cycle	61	Tile	8	Exposure Settings		A	448	G	215	T	215	C	448
17-03-17 22:16:06.558 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37023, sync = True, waitForSettling = True)
17-03-17 22:16:06.558 -07 000000610 INF: Z Motor: Moving to -0.169480 mm, started at -0.176445 mm, distance = 6.96 um
17-03-17 22:16:06.558 -07 000000610 INF: FPGA: Xmit ZDACW 37023\n [Z Motor]
17-03-17 22:16:06.558 -07 000000623 INF: FPGA: Recv ZDACW
17-03-17 22:16:06.568 -07 000000610 INF: FPGA: 'ZDACW 37023' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:16:06.568 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:16:06.568 -07 000000623 INF: FPGA: Recv ZDACR 37023
17-03-17 22:16:06.578 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:06.578 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:16:06.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:06.728 -07 000000623 INF: FPGA: Recv ZSGSRD 35669
17-03-17 22:16:06.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:06.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:06.748 -07 000000462 INF: FPGA: Recv ZSGSRD 35671
17-03-17 22:16:06.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:16:06.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:06.758 -07 000000462 INF: FPGA: Recv ZSGSRD 35669
17-03-17 22:16:06.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:06.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:06.768 -07 000000618 INF: FPGA: Recv ZSGSRD 35673
17-03-17 22:16:06.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:16:06.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:06.778 -07 000000618 INF: FPGA: Recv ZSGSRD 35673
17-03-17 22:16:06.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:06.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:06.788 -07 000000618 INF: FPGA: Recv ZSGSRD 35672
17-03-17 22:16:06.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:06.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:06.798 -07 000000618 INF: FPGA: Recv ZSGSRD 35672
17-03-17 22:16:06.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:06.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:06.808 -07 000000618 INF: FPGA: Recv ZSGSRD 35668
17-03-17 22:16:06.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:06.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:06.818 -07 000000618 INF: FPGA: Recv ZSGSRD 35674
17-03-17 22:16:06.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:06.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:06.828 -07 000000618 INF: FPGA: Recv ZSGSRD 35672
17-03-17 22:16:06.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:06.838 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:16:06.838 -07 000000462 INF: FPGA: Recv ZPIEZORD 31663
17-03-17 22:16:06.848 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:06.848 -07 000000610 INF: Z Motor: Piezo is near 47.6 V (nominally 0 to 100 V), expect near 56.5 V, since DAC is at 5.649 V. Piezo Error = -8.9 V.
17-03-17 22:16:06.848 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.5 um, Read 10 ADC samples: Avg = 35671 (-168.6 uncal um), Error = 0.9 uncal um, Median = 35672 (-168.6 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 35668 (-168.6 uncal um), Max = 35674 (-168.6 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 22:16:06.848 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35671, posNoise = 3, negNoise = 3
17-03-17 22:16:06.848 -07 000000610 INF: Z Motor: After move to -0.169480, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:16:06.848 -07 000000610 INF: Z Motor: MoveAbsStepped took 290 ms)
17-03-17 22:16:06.848 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:16:06.848 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:16:06.848 -07 000000448 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:16:06.848 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:16:06.848 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:16:06.848 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:16:06.848 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:16:06.848 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:16:06.848 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:16:06.848 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:16:06.848 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:16:06.848 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:16:06.858 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:16:06.858 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:16:06.858 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:16:06.858 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:16:06.858 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 22:16:06.858 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 22:16:06.868 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 22:16:06.868 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 22:16:06.868 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 448 448 215 215 37199 150\n [Camera]
17-03-17 22:16:06.958 -07 000000429 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:16:06.958 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 60. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=959, R2=982, Total=1941. Warn if over 250 bubbles per interval.
17-03-17 22:16:07.058 -07 000000623 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 61, FrontChillerTemperature: 3.979922,
17-03-17 22:16:07.068 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning red on 194
17-03-17 22:16:07.518 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 640
17-03-17 22:16:07.518 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 640
17-03-17 22:16:07.518 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:16:07.518 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:16:07.518 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 22:16:07.518 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 640
17-03-17 22:16:07.518 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 640
17-03-17 22:16:07.518 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:16:07.518 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:16:07.518 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 1406045800, 0x0, 418435064) start.
17-03-17 22:16:07.708 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37199 833
17-03-17 22:16:07.858 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning grn on 983
17-03-17 22:16:07.898 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 384 ms.
17-03-17 22:16:07.898 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 22:16:07.898 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:16:07.898 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 1406045800, 0x0, 418435064) end. Duration was 383 ms.
17-03-17 22:16:07.898 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-17 22:16:07.898 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:16:07.908 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:16:07.908 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 22:16:07.908 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:16:07.918 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 22:16:08.068 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1198
17-03-17 22:16:08.068 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1198
17-03-17 22:16:08.078 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:16:08.078 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:16:08.078 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1441468064, 0x0, 391868352) start.
17-03-17 22:16:08.078 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1198
17-03-17 22:16:08.078 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1198
17-03-17 22:16:08.078 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:16:08.188 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:16:08.188 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 22:16:08.268 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP 1391
17-03-17 22:16:08.268 -07 000000569 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:16:08.268 -07 000000610 INF: FPGA: 'CAMDBLSNAP 448 448 215 215 37199 150' command took 4 ms to send, 1393 ms to get response, and 1400 ms overall
17-03-17 22:16:08.268 -07 000000610 INF: Skipping AutoFocus in Tile 9: adopting Best-Z from the cache: -0.169800
17-03-17 22:16:08.268 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.16980 mm
17-03-17 22:16:08.268 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:16:08.268 -07 000000569 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-17 22:16:08.268 -07 000000569 INF: Y Motor: Moving to 66.5526 mm, started at 65.7134 mm, delta = 0.8392 mm
17-03-17 22:16:08.268 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:16:08.268 -07 000000623 INF: Z Motor: Entering MoveAbsStepped (DAC = 37093, sync = True, waitForSettling = False)
17-03-17 22:16:08.268 -07 000000623 INF: Z Motor: Moving to -0.169801 mm, started at -0.169481 mm, distance = -0.32 um
17-03-17 22:16:08.278 -07 000000623 INF: FPGA: Xmit ZDACW 37093\n [Z Motor]
17-03-17 22:16:08.458 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1441468064, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 22:16:08.458 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 22:16:08.458 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:16:08.458 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 22:16:08.458 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 22:16:08.468 -07 000000462 INF: FPGA: Recv YRDPOS 134582
17-03-17 22:16:08.468 -07 000000462 INF: FPGA: Recv ZDACW
17-03-17 22:16:08.468 -07 000000623 INF: FPGA: 'ZDACW 37093' command took 0 ms to send, 188 ms to get response, and 200 ms overall
17-03-17 22:16:08.468 -07 000000623 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:16:08.468 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 198 ms to get response, and 200 ms overall
17-03-17 22:16:08.468 -07 000000569 INF: Y Motor: Encoder = 134582 = motor step 105142.2 = 65.7139 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:16:08.478 -07 000000462 INF: FPGA: Recv ZDACR 37093
17-03-17 22:16:08.478 -07 000000623 INF: FPGA: 'ZDACR' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 22:16:08.478 -07 000000623 INF: Z Motor: MoveAbsStepped took 203 ms (did NOT wait for settling yet))
17-03-17 22:16:08.478 -07 000000569 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:16:08.478 -07 000000569 INF: Y Motor: Moving 1342 steps-19
17-03-17 22:16:08.478 -07 000000569 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:16:08.568 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 22:16:08.568 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 22:16:08.568 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:16:08.568 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 22:16:08.578 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 501 ms.
17-03-17 22:16:08.858 -07 000000623 INF: FPGA: Recv YMVTILE
17-03-17 22:16:08.858 -07 000000569 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 375 ms to get response, and 378 ms overall
17-03-17 22:16:08.898 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:16:08.898 -07 000000429 INF: FPGA: Recv YRDPOS 136271
17-03-17 22:16:08.908 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:16:08.908 -07 000000569 INF: Y Motor: Encoder = 136271 = motor step 106461.7 = 66.5386 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:16:08.908 -07 000000569 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-17 22:16:08.908 -07 000000569 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.839 mm, average velocity = 2.220 mm/sec
17-03-17 22:16:09.858 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:16:09.858 -07 000000623 INF: FPGA: Recv YRDPOS 136271
17-03-17 22:16:09.868 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:16:09.868 -07 000000569 INF: Y Motor: Encoder = 136271 = motor step 106461.7 = 66.5386 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:16:09.888 -07 000000569 INF: Y Motor: After move to 66.552605, error = -0.014030, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:16:09.888 -07 000000569 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:16:09.888 -07 000000569 INF: Y Motor: Moved to 66.5386 after 1617 ms (table move)
17-03-17 22:16:09.888 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.169801 mm (DAC = 37093)
17-03-17 22:16:09.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:09.898 -07 000000429 INF: FPGA: Recv ZSGSRD 35718
17-03-17 22:16:09.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 22:16:09.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:09.898 -07 000000551 INF: FPGA: Recv ZSGSRD 35726
17-03-17 22:16:09.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:09.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:09.908 -07 000000429 INF: FPGA: Recv ZSGSRD 35722
17-03-17 22:16:09.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:09.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:09.918 -07 000000478 INF: FPGA: Recv ZSGSRD 35718
17-03-17 22:16:09.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:09.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:09.928 -07 000000551 INF: FPGA: Recv ZSGSRD 35719
17-03-17 22:16:09.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:09.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:09.938 -07 000000576 INF: FPGA: Recv ZSGSRD 35721
17-03-17 22:16:09.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:09.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:09.948 -07 000000429 INF: FPGA: Recv ZSGSRD 35726
17-03-17 22:16:09.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:09.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:09.958 -07 000000478 INF: FPGA: Recv ZSGSRD 35728
17-03-17 22:16:09.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:09.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:09.968 -07 000000569 INF: FPGA: Recv ZSGSRD 35722
17-03-17 22:16:09.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:09.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:09.978 -07 000000429 INF: FPGA: Recv ZSGSRD 35724
17-03-17 22:16:09.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:09.988 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:16:09.988 -07 000000551 INF: FPGA: Recv ZPIEZORD 31744
17-03-17 22:16:09.998 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:09.998 -07 000000610 INF: Z Motor: Piezo is near 47.8 V (nominally 0 to 100 V), expect near 56.6 V, since DAC is at 5.660 V. Piezo Error = -8.8 V.
17-03-17 22:16:09.998 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.8 um, Read 10 ADC samples: Avg = 35722 (-168.9 uncal um), Error = 0.9 uncal um, Median = 35722 (-168.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35718 (-168.9 uncal um), Max = 35728 (-169.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 22:16:09.998 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35722, posNoise = 6, negNoise = 4
17-03-17 22:16:09.998 -07 000000610 INF: Z Motor: After move to -0.169801, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:16:09.998 -07 000000610 INF: Z Motor: Settle wait time = 1619 ms, measure time = 103 ms (allowed 150 ms), total time = 1722 ms
17-03-17 22:16:09.998 -07 000000610 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 22:16:10.048 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1774 ms
17-03-17 22:16:10.048 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:16:10.048 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.53857421875, Z-position -0.16980905813912. ----------
17-03-17 22:16:10.048 -07 000000610 INF: Cycle	61	Tile	9	Exposure Settings		A	448	G	215	T	215	C	448
17-03-17 22:16:10.048 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36916, sync = True, waitForSettling = True)
17-03-17 22:16:10.048 -07 000000610 INF: Z Motor: Moving to -0.168991 mm, started at -0.169809 mm, distance = 0.82 um
17-03-17 22:16:10.048 -07 000000610 INF: FPGA: Xmit ZDACW 36916\n [Z Motor]
17-03-17 22:16:10.048 -07 000000623 INF: FPGA: Recv ZDACW
17-03-17 22:16:10.058 -07 000000610 INF: FPGA: 'ZDACW 36916' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:16:10.058 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:16:10.058 -07 000000551 INF: FPGA: Recv ZDACR 36916
17-03-17 22:16:10.068 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:10.068 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:16:10.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:10.218 -07 000000623 INF: FPGA: Recv ZSGSRD 35593
17-03-17 22:16:10.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:16:10.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:10.228 -07 000000551 INF: FPGA: Recv ZSGSRD 35599
17-03-17 22:16:10.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:10.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:10.238 -07 000000623 INF: FPGA: Recv ZSGSRD 35595
17-03-17 22:16:10.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:10.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:10.248 -07 000000551 INF: FPGA: Recv ZSGSRD 35596
17-03-17 22:16:10.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:10.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:10.258 -07 000000569 INF: FPGA: Recv ZSGSRD 35589
17-03-17 22:16:10.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:10.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:10.268 -07 000000478 INF: FPGA: Recv ZSGSRD 35605
17-03-17 22:16:10.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:10.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:10.278 -07 000000462 INF: FPGA: Recv ZSGSRD 35596
17-03-17 22:16:10.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:10.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:10.288 -07 000000551 INF: FPGA: Recv ZSGSRD 35599
17-03-17 22:16:10.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:10.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:10.298 -07 000000462 INF: FPGA: Recv ZSGSRD 35590
17-03-17 22:16:10.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:10.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:10.308 -07 000000551 INF: FPGA: Recv ZSGSRD 35594
17-03-17 22:16:10.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:10.318 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:16:10.318 -07 000000462 INF: FPGA: Recv ZPIEZORD 31564
17-03-17 22:16:10.328 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:10.328 -07 000000610 INF: Z Motor: Piezo is near 47.4 V (nominally 0 to 100 V), expect near 56.3 V, since DAC is at 5.633 V. Piezo Error = -8.9 V.
17-03-17 22:16:10.328 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.0 um, Read 10 ADC samples: Avg = 35596 (-168.1 uncal um), Error = 0.9 uncal um, Median = 35596 (-168.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 35589 (-168.1 uncal um), Max = 35605 (-168.2 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 22:16:10.328 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35596, posNoise = 9, negNoise = 7
17-03-17 22:16:10.328 -07 000000610 INF: Z Motor: After move to -0.168991, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:16:10.328 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-17 22:16:10.328 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:16:10.328 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:16:10.328 -07 000000478 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:16:10.328 -07 000000429 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:16:10.328 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:16:10.328 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:16:10.328 -07 000000623 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:16:10.328 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:16:10.328 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:16:10.328 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:16:10.328 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-17 22:16:10.328 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:16:10.338 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 22:16:10.338 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:16:10.338 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:16:10.338 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:16:10.338 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 22:16:10.338 -07 000000623 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 22:16:10.338 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 22:16:10.338 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 22:16:10.348 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 448 448 215 215 37093 150\n [Camera]
17-03-17 22:16:10.548 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP turning red on 193
17-03-17 22:16:10.988 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 640
17-03-17 22:16:10.998 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 640
17-03-17 22:16:10.998 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:16:10.998 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 640
17-03-17 22:16:10.998 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 640
17-03-17 22:16:10.998 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:16:10.998 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:16:10.998 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 1476890328, 0x0, 418435064) start.
17-03-17 22:16:11.008 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:16:11.008 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1406045800, 0x0, 391868352) start.
17-03-17 22:16:11.188 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37093 833
17-03-17 22:16:11.338 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP turning grn on 983
17-03-17 22:16:11.378 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 1476890328, 0x0, 418435064) end. Duration was 381 ms.
17-03-17 22:16:11.378 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-17 22:16:11.378 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:16:11.388 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 22:16:11.408 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1406045800, 0x0, 391868352) end. Duration was 399 ms.
17-03-17 22:16:11.408 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 22:16:11.408 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:16:11.408 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-17 22:16:11.408 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 22:16:11.408 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 416 ms.
17-03-17 22:16:11.548 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1198
17-03-17 22:16:11.548 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1198
17-03-17 22:16:11.558 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:16:11.558 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:16:11.558 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 2164362856, 0x0, 391868352) start.
17-03-17 22:16:11.558 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1198
17-03-17 22:16:11.558 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1198
17-03-17 22:16:11.558 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:16:11.558 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:16:11.558 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2199785120, 0x0, 418435064) start.
17-03-17 22:16:11.748 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP 1393
17-03-17 22:16:11.748 -07 000000448 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:16:11.748 -07 000000610 INF: FPGA: 'CAMDBLSNAP 448 448 215 215 37093 150' command took 2 ms to send, 1392 ms to get response, and 1400 ms overall
17-03-17 22:16:11.748 -07 000000610 INF: Skipping AutoFocus in Tile 10: adopting Best-Z from the cache: -0.169807
17-03-17 22:16:11.748 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.16981 mm
17-03-17 22:16:11.748 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:16:11.748 -07 000000569 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-17 22:16:11.748 -07 000000623 INF: Z Motor: Entering MoveAbsStepped (DAC = 37094, sync = True, waitForSettling = False)
17-03-17 22:16:11.748 -07 000000623 INF: Z Motor: Moving to -0.169805 mm, started at -0.169000 mm, distance = -0.81 um
17-03-17 22:16:11.748 -07 000000623 INF: FPGA: Xmit ZDACW 37094\n [Z Motor]
17-03-17 22:16:11.748 -07 000000569 INF: Y Motor: Moving to 67.3826 mm, started at 66.5386 mm, delta = 0.8440 mm
17-03-17 22:16:11.748 -07 000000429 INF: FPGA: Recv ZDACW
17-03-17 22:16:11.758 -07 000000623 INF: FPGA: 'ZDACW 37094' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:16:11.758 -07 000000623 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:16:11.758 -07 000000462 INF: FPGA: Recv ZDACR 37094
17-03-17 22:16:11.768 -07 000000623 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:11.768 -07 000000623 INF: Z Motor: MoveAbsStepped took 13 ms (did NOT wait for settling yet))
17-03-17 22:16:11.768 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:16:11.768 -07 000000448 INF: FPGA: Recv YRDPOS 136271
17-03-17 22:16:11.778 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-17 22:16:11.778 -07 000000569 INF: Y Motor: Encoder = 136271 = motor step 106461.7 = 66.5386 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:16:11.778 -07 000000569 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:16:11.778 -07 000000569 INF: Y Motor: Moving 1350 steps-29
17-03-17 22:16:11.778 -07 000000569 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:16:11.938 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 2164362856, 0x0, 391868352) end. Duration was 384 ms.
17-03-17 22:16:11.938 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 22:16:11.938 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:16:11.938 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2199785120, 0x0, 418435064) end. Duration was 384 ms.
17-03-17 22:16:11.938 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-17 22:16:11.938 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:16:11.938 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:16:11.938 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 22:16:11.948 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:16:11.948 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 22:16:11.958 -07 000000486 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:16:11.958 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 60. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=959, R2=982, Total=1941. Warn if over 250 bubbles per interval.
17-03-17 22:16:12.148 -07 000000431 INF: FPGA: Recv YMVTILE
17-03-17 22:16:12.148 -07 000000569 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 378 ms overall
17-03-17 22:16:12.188 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:16:12.198 -07 000000551 INF: FPGA: Recv YRDPOS 137977
17-03-17 22:16:12.198 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 22:16:12.198 -07 000000569 INF: Y Motor: Encoder = 137977 = motor step 107794.5 = 67.3716 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:16:12.198 -07 000000569 INF: Y Motor: Position error before settling (table move) = -23 encoder counts (-0.011 mm)
17-03-17 22:16:12.198 -07 000000569 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.844 mm, average velocity = 2.233 mm/sec
17-03-17 22:16:12.418 -07 000000478 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 61, FrontChillerTemperature: 4.011254,
17-03-17 22:16:13.148 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:16:13.148 -07 000000429 INF: FPGA: Recv YRDPOS 137977
17-03-17 22:16:13.158 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:16:13.158 -07 000000569 INF: Y Motor: Encoder = 137977 = motor step 107794.5 = 67.3716 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:16:13.178 -07 000000569 INF: Y Motor: After move to 67.382607, error = -0.011024, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:16:13.178 -07 000000569 INF: Y Motor: Position error after settling (table move) = -23 encoder counts (-0.011 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:16:13.178 -07 000000569 INF: Y Motor: Moved to 67.3716 after 1428 ms (table move)
17-03-17 22:16:13.178 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.169805 mm (DAC = 37094)
17-03-17 22:16:13.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:13.188 -07 000000462 INF: FPGA: Recv ZSGSRD 35726
17-03-17 22:16:13.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:16:13.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:13.188 -07 000000429 INF: FPGA: Recv ZSGSRD 35722
17-03-17 22:16:13.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:13.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:13.198 -07 000000429 INF: FPGA: Recv ZSGSRD 35728
17-03-17 22:16:13.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:13.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:13.208 -07 000000569 INF: FPGA: Recv ZSGSRD 35724
17-03-17 22:16:13.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:13.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:13.218 -07 000000429 INF: FPGA: Recv ZSGSRD 35725
17-03-17 22:16:13.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:13.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:13.228 -07 000000569 INF: FPGA: Recv ZSGSRD 35727
17-03-17 22:16:13.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 6 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:13.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:13.238 -07 000000569 INF: FPGA: Recv ZSGSRD 35715
17-03-17 22:16:13.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:13.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:13.248 -07 000000462 INF: FPGA: Recv ZSGSRD 35722
17-03-17 22:16:13.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:13.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:13.258 -07 000000569 INF: FPGA: Recv ZSGSRD 35726
17-03-17 22:16:13.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:13.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:13.268 -07 000000462 INF: FPGA: Recv ZSGSRD 35720
17-03-17 22:16:13.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:13.278 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:16:13.278 -07 000000429 INF: FPGA: Recv ZPIEZORD 31734
17-03-17 22:16:13.288 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:13.288 -07 000000610 INF: Z Motor: Piezo is near 47.8 V (nominally 0 to 100 V), expect near 56.6 V, since DAC is at 5.660 V. Piezo Error = -8.8 V.
17-03-17 22:16:13.288 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.8 um, Read 10 ADC samples: Avg = 35724 (-168.9 uncal um), Error = 0.9 uncal um, Median = 35724 (-168.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35715 (-168.9 uncal um), Max = 35728 (-169.0 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 22:16:13.288 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35724, posNoise = 4, negNoise = 9
17-03-17 22:16:13.288 -07 000000610 INF: Z Motor: After move to -0.169805, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:16:13.288 -07 000000610 INF: Z Motor: Settle wait time = 1431 ms, measure time = 103 ms (allowed 150 ms), total time = 1534 ms
17-03-17 22:16:13.288 -07 000000610 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 22:16:13.338 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1585 ms
17-03-17 22:16:13.338 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:16:13.338 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.37158203125, Z-position -0.169821906563403. ----------
17-03-17 22:16:13.338 -07 000000610 INF: Cycle	61	Tile	10	Exposure Settings		A	448	G	215	T	215	C	448
17-03-17 22:16:13.338 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36918, sync = True, waitForSettling = True)
17-03-17 22:16:13.338 -07 000000610 INF: Z Motor: Moving to -0.169000 mm, started at -0.169822 mm, distance = 0.82 um
17-03-17 22:16:13.338 -07 000000610 INF: FPGA: Xmit ZDACW 36918\n [Z Motor]
17-03-17 22:16:13.348 -07 000000429 INF: FPGA: Recv ZDACW
17-03-17 22:16:13.348 -07 000000610 INF: FPGA: 'ZDACW 36918' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:16:13.348 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:16:13.348 -07 000000462 INF: FPGA: Recv ZDACR 36918
17-03-17 22:16:13.358 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:13.358 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:16:13.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:13.508 -07 000000623 INF: FPGA: Recv ZSGSRD 35599
17-03-17 22:16:13.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:16:13.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:13.518 -07 000000448 INF: FPGA: Recv ZSGSRD 35600
17-03-17 22:16:13.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:13.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:13.528 -07 000000429 INF: FPGA: Recv ZSGSRD 35596
17-03-17 22:16:13.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:13.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:13.538 -07 000000448 INF: FPGA: Recv ZSGSRD 35593
17-03-17 22:16:13.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:13.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:13.548 -07 000000429 INF: FPGA: Recv ZSGSRD 35598
17-03-17 22:16:13.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:13.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:13.558 -07 000000448 INF: FPGA: Recv ZSGSRD 35595
17-03-17 22:16:13.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:13.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:13.568 -07 000000429 INF: FPGA: Recv ZSGSRD 35598
17-03-17 22:16:13.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:13.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:13.578 -07 000000448 INF: FPGA: Recv ZSGSRD 35601
17-03-17 22:16:13.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:13.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:13.588 -07 000000012 INF: FPGA: Recv ZSGSRD 35598
17-03-17 22:16:13.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:13.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:13.598 -07 000000448 INF: FPGA: Recv ZSGSRD 35598
17-03-17 22:16:13.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:13.608 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:16:13.608 -07 000000429 INF: FPGA: Recv ZPIEZORD 31546
17-03-17 22:16:13.618 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:13.618 -07 000000610 INF: Z Motor: Piezo is near 47.4 V (nominally 0 to 100 V), expect near 56.3 V, since DAC is at 5.633 V. Piezo Error = -8.9 V.
17-03-17 22:16:13.618 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.0 um, Read 10 ADC samples: Avg = 35598 (-168.1 uncal um), Error = 0.9 uncal um, Median = 35598 (-168.1 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35593 (-168.1 uncal um), Max = 35601 (-168.2 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 22:16:13.618 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35598, posNoise = 3, negNoise = 5
17-03-17 22:16:13.618 -07 000000610 INF: Z Motor: After move to -0.169000, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:16:13.618 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-17 22:16:13.618 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:16:13.618 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:16:13.618 -07 000000448 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:16:13.618 -07 000000623 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:16:13.618 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:16:13.618 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:16:13.618 -07 000000429 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:16:13.618 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:16:13.618 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:16:13.618 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:16:13.618 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:16:13.618 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:16:13.628 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:16:13.628 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:16:13.628 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:16:13.628 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:16:13.638 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 22:16:13.638 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 22:16:13.638 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 22:16:13.638 -07 000000429 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 22:16:13.638 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 448 448 215 215 37094 150\n [Camera]
17-03-17 22:16:13.848 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP turning red on 195
17-03-17 22:16:14.288 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 640
17-03-17 22:16:14.288 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 640
17-03-17 22:16:14.288 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:16:14.288 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:16:14.288 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 2235207384, 0x0, 391868352) start.
17-03-17 22:16:14.298 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 640
17-03-17 22:16:14.298 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 640
17-03-17 22:16:14.298 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:16:14.298 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:16:14.298 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-17 22:16:14.488 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37094 833
17-03-17 22:16:14.628 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning grn on 983
17-03-17 22:16:14.668 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 2235207384, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 22:16:14.668 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 22:16:14.668 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:16:14.668 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 22:16:14.668 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 22:16:14.668 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:16:14.678 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:16:14.678 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 22:16:14.678 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:16:14.678 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 22:16:14.848 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1198
17-03-17 22:16:14.848 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1198
17-03-17 22:16:14.848 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:16:14.848 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:16:14.848 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start.
17-03-17 22:16:14.848 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1198
17-03-17 22:16:14.848 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1198
17-03-17 22:16:14.848 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:16:14.848 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:16:14.848 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) start.
17-03-17 22:16:15.038 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP 1390
17-03-17 22:16:15.038 -07 000000429 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:16:15.038 -07 000000610 INF: FPGA: 'CAMDBLSNAP 448 448 215 215 37094 150' command took 2 ms to send, 1387 ms to get response, and 1397 ms overall
17-03-17 22:16:15.038 -07 000000610 INF: Skipping AutoFocus in Tile 11: adopting Best-Z from the cache: -0.169288
17-03-17 22:16:15.038 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.16929 mm
17-03-17 22:16:15.048 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:16:15.048 -07 000000576 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-17 22:16:15.048 -07 000000576 INF: Y Motor: Moving to 68.2126 mm, started at 67.3716 mm, delta = 0.8410 mm
17-03-17 22:16:15.048 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:16:15.048 -07 000000569 INF: Z Motor: Entering MoveAbsStepped (DAC = 36981, sync = True, waitForSettling = False)
17-03-17 22:16:15.048 -07 000000569 INF: Z Motor: Moving to -0.169288 mm, started at -0.169012 mm, distance = -0.28 um
17-03-17 22:16:15.048 -07 000000478 INF: FPGA: Recv YRDPOS 137977
17-03-17 22:16:15.058 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:16:15.058 -07 000000576 INF: Y Motor: Encoder = 137977 = motor step 107794.5 = 67.3716 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:16:15.058 -07 000000576 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:16:15.058 -07 000000576 INF: Y Motor: Moving 1346 steps-23
17-03-17 22:16:15.058 -07 000000569 INF: FPGA: Xmit ZDACW 36981\n [Z Motor]
17-03-17 22:16:15.058 -07 000000478 INF: FPGA: Recv ZDACW
17-03-17 22:16:15.068 -07 000000569 INF: FPGA: 'ZDACW 36981' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 22:16:15.068 -07 000000569 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:16:15.068 -07 000000486 INF: FPGA: Recv ZDACR 36981
17-03-17 22:16:15.078 -07 000000576 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:16:15.078 -07 000000569 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:15.078 -07 000000569 INF: Z Motor: MoveAbsStepped took 27 ms (did NOT wait for settling yet))
17-03-17 22:16:15.238 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 382 ms.
17-03-17 22:16:15.238 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 22:16:15.238 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:16:15.238 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) end. Duration was 381 ms.
17-03-17 22:16:15.238 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-17 22:16:15.238 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:16:15.238 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:16:15.238 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 22:16:15.238 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:16:15.248 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 22:16:15.448 -07 000000429 INF: FPGA: Recv YMVTILE
17-03-17 22:16:15.448 -07 000000576 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 22:16:15.488 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:16:15.498 -07 000000012 INF: FPGA: Recv YRDPOS 139682
17-03-17 22:16:15.498 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 22:16:15.498 -07 000000576 INF: Y Motor: Encoder = 139682 = motor step 109126.6 = 68.2041 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:16:15.498 -07 000000576 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-17 22:16:15.498 -07 000000576 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.841 mm, average velocity = 2.113 mm/sec
17-03-17 22:16:16.448 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:16:16.448 -07 000000569 INF: FPGA: Recv YRDPOS 139683
17-03-17 22:16:16.458 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:16.458 -07 000000576 INF: Y Motor: Encoder = 139683 = motor step 109127.3 = 68.2046 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:16:16.478 -07 000000576 INF: Y Motor: After move to 68.212608, error = -0.008018, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:16:16.478 -07 000000576 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 22:16:16.478 -07 000000576 INF: Y Motor: Moved to 68.2046 after 1430 ms (table move)
17-03-17 22:16:16.478 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.169288 mm (DAC = 36981)
17-03-17 22:16:16.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:16.488 -07 000000576 INF: FPGA: Recv ZSGSRD 35643
17-03-17 22:16:16.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:16:16.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:16.488 -07 000000576 INF: FPGA: Recv ZSGSRD 35644
17-03-17 22:16:16.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:16.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:16.498 -07 000000462 INF: FPGA: Recv ZSGSRD 35636
17-03-17 22:16:16.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:16.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:16.508 -07 000000462 INF: FPGA: Recv ZSGSRD 35648
17-03-17 22:16:16.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:16.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:16.518 -07 000000576 INF: FPGA: Recv ZSGSRD 35642
17-03-17 22:16:16.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:16.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:16.528 -07 000000576 INF: FPGA: Recv ZSGSRD 35644
17-03-17 22:16:16.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:16.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:16.538 -07 000000576 INF: FPGA: Recv ZSGSRD 35640
17-03-17 22:16:16.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:16.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:16.548 -07 000000576 INF: FPGA: Recv ZSGSRD 35636
17-03-17 22:16:16.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:16.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:16.558 -07 000000569 INF: FPGA: Recv ZSGSRD 35645
17-03-17 22:16:16.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:16.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:16.568 -07 000000569 INF: FPGA: Recv ZSGSRD 35640
17-03-17 22:16:16.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:16.578 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:16:16.578 -07 000000569 INF: FPGA: Recv ZPIEZORD 31645
17-03-17 22:16:16.588 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:16.588 -07 000000610 INF: Z Motor: Piezo is near 47.6 V (nominally 0 to 100 V), expect near 56.4 V, since DAC is at 5.643 V. Piezo Error = -8.8 V.
17-03-17 22:16:16.588 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.3 um, Read 10 ADC samples: Avg = 35642 (-168.4 uncal um), Error = 0.9 uncal um, Median = 35642 (-168.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35636 (-168.4 uncal um), Max = 35648 (-168.5 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 22:16:16.588 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35642, posNoise = 6, negNoise = 6
17-03-17 22:16:16.588 -07 000000610 INF: Z Motor: After move to -0.169288, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:16:16.588 -07 000000610 INF: Z Motor: Settle wait time = 1433 ms, measure time = 104 ms (allowed 150 ms), total time = 1537 ms
17-03-17 22:16:16.588 -07 000000610 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 22:16:16.638 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1590 ms
17-03-17 22:16:16.638 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:16:16.638 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.20458984375, Z-position -0.169295121167779. ----------
17-03-17 22:16:16.638 -07 000000610 INF: Cycle	61	Tile	11	Exposure Settings		A	448	G	215	T	215	C	448
17-03-17 22:16:16.638 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36804, sync = True, waitForSettling = True)
17-03-17 22:16:16.638 -07 000000610 INF: Z Motor: Moving to -0.168478 mm, started at -0.169295 mm, distance = 0.82 um
17-03-17 22:16:16.638 -07 000000610 INF: FPGA: Xmit ZDACW 36804\n [Z Motor]
17-03-17 22:16:16.648 -07 000000569 INF: FPGA: Recv ZDACW
17-03-17 22:16:16.648 -07 000000610 INF: FPGA: 'ZDACW 36804' command took 0 ms to send, 2 ms to get response, and 7 ms overall
17-03-17 22:16:16.648 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:16:16.648 -07 000000569 INF: FPGA: Recv ZDACR 36804
17-03-17 22:16:16.658 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:16:16.658 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:16:16.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:16.808 -07 000000569 INF: FPGA: Recv ZSGSRD 35514
17-03-17 22:16:16.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:16:16.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:16.818 -07 000000569 INF: FPGA: Recv ZSGSRD 35523
17-03-17 22:16:16.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:16.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:16.828 -07 000000569 INF: FPGA: Recv ZSGSRD 35519
17-03-17 22:16:16.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:16.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:16.838 -07 000000569 INF: FPGA: Recv ZSGSRD 35514
17-03-17 22:16:16.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:16.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:16.848 -07 000000569 INF: FPGA: Recv ZSGSRD 35519
17-03-17 22:16:16.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:16.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:16.858 -07 000000569 INF: FPGA: Recv ZSGSRD 35518
17-03-17 22:16:16.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:16.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:16.868 -07 000000569 INF: FPGA: Recv ZSGSRD 35514
17-03-17 22:16:16.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:16.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:16.878 -07 000000569 INF: FPGA: Recv ZSGSRD 35512
17-03-17 22:16:16.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:16.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:16.888 -07 000000569 INF: FPGA: Recv ZSGSRD 35517
17-03-17 22:16:16.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:16.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:16.898 -07 000000569 INF: FPGA: Recv ZSGSRD 35520
17-03-17 22:16:16.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:16.908 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:16:16.908 -07 000000569 INF: FPGA: Recv ZPIEZORD 31447
17-03-17 22:16:16.918 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:16.918 -07 000000610 INF: Z Motor: Piezo is near 47.2 V (nominally 0 to 100 V), expect near 56.2 V, since DAC is at 5.616 V. Piezo Error = -9.0 V.
17-03-17 22:16:16.918 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.5 um, Read 10 ADC samples: Avg = 35517 (-167.6 uncal um), Error = 0.9 uncal um, Median = 35518 (-167.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35512 (-167.6 uncal um), Max = 35523 (-167.7 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 22:16:16.918 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35517, posNoise = 6, negNoise = 5
17-03-17 22:16:16.918 -07 000000610 INF: Z Motor: After move to -0.168478, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:16:16.918 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 22:16:16.918 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:16:16.918 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:16:16.918 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:16:16.918 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:16:16.918 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:16:16.918 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:16:16.918 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:16:16.918 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:16:16.928 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:16:16.928 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:16:16.938 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 22:16:16.938 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 22:16:16.948 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:16:16.948 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:16:16.948 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 22:16:16.948 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:16:16.948 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 22:16:16.948 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:16:16.958 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 12 ms.
17-03-17 22:16:16.958 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 22:16:16.968 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:16:16.968 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 60. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=959, R2=982, Total=1941. Warn if over 250 bubbles per interval.
17-03-17 22:16:16.968 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 448 448 215 215 36981 150\n [Camera]
17-03-17 22:16:17.168 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:16:17.608 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 640
17-03-17 22:16:17.608 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 640
17-03-17 22:16:17.608 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:16:17.618 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:16:17.618 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-17 22:16:17.618 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 640
17-03-17 22:16:17.618 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 640
17-03-17 22:16:17.618 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:16:17.618 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:16:17.618 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-17 22:16:17.778 -07 000000561 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 61, FrontChillerTemperature: 4.001704,
17-03-17 22:16:17.808 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36981 833
17-03-17 22:16:17.958 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning grn on 983
17-03-17 22:16:17.988 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 22:16:17.988 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 22:16:17.988 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:16:17.988 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 22:16:17.988 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 22:16:17.988 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:16:17.998 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 22:16:17.998 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 22:16:17.998 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 22:16:18.008 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 22:16:18.168 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1199
17-03-17 22:16:18.168 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1199
17-03-17 22:16:18.168 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:16:18.168 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:16:18.168 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) start.
17-03-17 22:16:18.178 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1199
17-03-17 22:16:18.178 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1199
17-03-17 22:16:18.178 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:16:18.178 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:16:18.178 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-17 22:16:18.358 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP 1391
17-03-17 22:16:18.358 -07 000000478 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:16:18.358 -07 000000610 INF: FPGA: 'CAMDBLSNAP 448 448 215 215 36981 150' command took 2 ms to send, 1388 ms to get response, and 1397 ms overall
17-03-17 22:16:18.368 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 22:16:18.368 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.20458984375, Z-Position -0.168492094650059. ------
17-03-17 22:16:18.368 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:16:18.368 -07 000000551 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.17510 mm
17-03-17 22:16:18.368 -07 000000551 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:16:18.368 -07 000000478 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-17 22:16:18.368 -07 000000478 INF: Y Motor: Moving to 69.0426 mm, started at 68.2046 mm, delta = 0.8380 mm
17-03-17 22:16:18.368 -07 000000627 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:16:18.378 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 22:16:18.378 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:16:18.378 -07 000000561 INF: Z Motor: Entering MoveAbsStepped (DAC = 38251, sync = True, waitForSettling = False)
17-03-17 22:16:18.378 -07 000000561 INF: Z Motor: Moving to -0.175102 mm, started at -0.168492 mm, distance = -6.61 um
17-03-17 22:16:18.378 -07 000000486 INF: FPGA: Recv YRDPOS 139683
17-03-17 22:16:18.388 -07 000000618 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:16:18.388 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 22:16:18.388 -07 000000478 INF: Y Motor: Encoder = 139683 = motor step 109127.3 = 68.2046 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:16:18.388 -07 000000478 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:16:18.388 -07 000000478 INF: Y Motor: Moving 1341 steps-17
17-03-17 22:16:18.398 -07 000000561 INF: FPGA: Xmit ZDACW 38251\n [Z Motor]
17-03-17 22:16:18.398 -07 000000627 INF: FPGA: Recv ZDACW
17-03-17 22:16:18.408 -07 000000478 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:16:18.408 -07 000000561 INF: FPGA: 'ZDACW 38251' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-17 22:16:18.418 -07 000000561 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:16:18.418 -07 000000627 INF: FPGA: Recv ZDACR 38251
17-03-17 22:16:18.428 -07 000000561 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:16:18.428 -07 000000561 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-17 22:16:18.558 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) end. Duration was 384 ms.
17-03-17 22:16:18.558 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 22:16:18.558 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:16:18.558 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 383 ms.
17-03-17 22:16:18.558 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-17 22:16:18.558 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:16:18.558 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:16:18.558 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 22:16:18.568 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:16:18.568 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 22:16:18.588 -07 000000627 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:16:18.588 -07 000000618 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 212 ms overall
17-03-17 22:16:18.778 -07 000000618 INF: FPGA: Recv YMVTILE
17-03-17 22:16:18.778 -07 000000478 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 22:16:18.818 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:16:19.728 -07 000000429 INF: FPGA: Recv YRDPOS 141366
17-03-17 22:16:19.728 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 900 ms to get response, and 901 ms overall
17-03-17 22:16:19.728 -07 000000478 INF: Y Motor: Encoder = 141366 = motor step 110442.2 = 69.0264 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:16:19.728 -07 000000478 INF: Y Motor: Position error before settling (table move) = -33 encoder counts (-0.016 mm)
17-03-17 22:16:19.728 -07 000000478 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.838 mm, average velocity = 2.111 mm/sec
17-03-17 22:16:20.678 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:16:20.678 -07 000000561 INF: FPGA: Recv YRDPOS 141367
17-03-17 22:16:20.688 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:16:20.688 -07 000000478 INF: Y Motor: Encoder = 141367 = motor step 110443.0 = 69.0269 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:16:20.708 -07 000000478 INF: Y Motor: After move to 69.042610, error = -0.015755, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:16:20.708 -07 000000478 INF: Y Motor: Position error after settling (table move) = -32 encoder counts (-0.016 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 22:16:20.708 -07 000000478 INF: Y Motor: Moved to 69.0269 after 2338 ms (table move)
17-03-17 22:16:20.708 -07 000000551 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175102 mm (DAC = 38251)
17-03-17 22:16:20.708 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:20.718 -07 000000561 INF: FPGA: Recv ZSGSRD 36551
17-03-17 22:16:20.718 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 22:16:20.718 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:20.718 -07 000000478 INF: FPGA: Recv ZSGSRD 36549
17-03-17 22:16:20.728 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:16:20.728 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:20.728 -07 000000627 INF: FPGA: Recv ZSGSRD 36543
17-03-17 22:16:20.738 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:20.738 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:20.738 -07 000000627 INF: FPGA: Recv ZSGSRD 36549
17-03-17 22:16:20.748 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:20.748 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:20.748 -07 000000569 INF: FPGA: Recv ZSGSRD 36543
17-03-17 22:16:20.758 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:20.758 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:20.758 -07 000000478 INF: FPGA: Recv ZSGSRD 36546
17-03-17 22:16:20.768 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:20.768 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:20.768 -07 000000569 INF: FPGA: Recv ZSGSRD 36549
17-03-17 22:16:20.778 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:20.778 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:20.778 -07 000000012 INF: FPGA: Recv ZSGSRD 36546
17-03-17 22:16:20.788 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:20.788 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:20.788 -07 000000429 INF: FPGA: Recv ZSGSRD 36546
17-03-17 22:16:20.798 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:20.798 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:20.798 -07 000000627 INF: FPGA: Recv ZSGSRD 36546
17-03-17 22:16:20.808 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:20.808 -07 000000551 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:16:20.808 -07 000000569 INF: FPGA: Recv ZPIEZORD 32855
17-03-17 22:16:20.818 -07 000000551 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:20.818 -07 000000551 INF: Z Motor: Piezo is near 50.2 V (nominally 0 to 100 V), expect near 58.4 V, since DAC is at 5.837 V. Piezo Error = -8.2 V.
17-03-17 22:16:20.818 -07 000000551 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.1 um, Read 10 ADC samples: Avg = 36547 (-174.2 uncal um), Error = 0.9 uncal um, Median = 36546 (-174.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 36543 (-174.2 uncal um), Max = 36551 (-174.2 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 22:16:20.818 -07 000000551 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36547, posNoise = 4, negNoise = 4
17-03-17 22:16:20.818 -07 000000551 INF: Z Motor: After move to -0.175102, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:16:20.818 -07 000000551 INF: Z Motor: Settle wait time = 2337 ms, measure time = 102 ms (allowed 150 ms), total time = 2439 ms
17-03-17 22:16:20.818 -07 000000551 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 22:16:20.868 -07 000000551 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2495 ms
17-03-17 22:16:20.868 -07 000000551 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:16:20.868 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:16:20.868 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:16:20.868 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:16:20.868 -07 000000478 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:16:20.868 -07 000000627 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:16:20.868 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:16:20.868 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 22:16:20.868 -07 000000627 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:16:20.878 -07 000000627 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:16:20.878 -07 000000627 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:16:20.878 -07 000000627 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 22:16:20.878 -07 000000627 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-17 22:16:20.898 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:16:20.938 -07 000000569 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:16:21.138 -07 000000569 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:16:21.138 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:16:21.138 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:16:21.138 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591997688, 0x0, 559484976) start.
17-03-17 22:16:21.178 -07 000000569 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:16:21.178 -07 000000012 INF: FPGA: Recv CAMSNAP
17-03-17 22:16:21.178 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 275 ms to get response, and 285 ms overall
17-03-17 22:16:21.258 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591997688, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 22:16:21.258 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:16:21.258 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:16:21.258 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 22:16:21.278 -07 000000569 INF: Autofocus start
17-03-17 22:16:21.278 -07 000000569 INF: MeasureProfile start
17-03-17 22:16:21.278 -07 000000478 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:16:21.288 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:16:21.288 -07 000000478 INF: FPGA: 'FOCMRRCUR 80' command took 3 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:16:21.288 -07 000000478 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:16:21.298 -07 000000569 INF: MeasureProfile done
17-03-17 22:16:21.298 -07 000000569 INF: X=80  Z correction [um]=0.337546
17-03-17 22:16:21.298 -07 000000569 INF: Autofocus finished
17-03-17 22:16:21.488 -07 000000429 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:16:21.488 -07 000000478 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:16:21.488 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02685546875, Z-position -0.175109033156073. ----------
17-03-17 22:16:21.488 -07 000000610 INF: Cycle	61	Tile	12	Exposure Settings		A	448	G	215	T	215	C	448
17-03-17 22:16:21.498 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36837, sync = True, waitForSettling = True)
17-03-17 22:16:21.498 -07 000000610 INF: Z Motor: Moving to -0.168629 mm, started at -0.175109 mm, distance = 6.48 um
17-03-17 22:16:21.498 -07 000000610 INF: FPGA: Xmit ZDACW 36837\n [Z Motor]
17-03-17 22:16:21.498 -07 000000627 INF: FPGA: Recv ZDACW
17-03-17 22:16:21.508 -07 000000610 INF: FPGA: 'ZDACW 36837' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:16:21.508 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:16:21.508 -07 000000627 INF: FPGA: Recv ZDACR 36837
17-03-17 22:16:21.518 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:21.518 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:16:21.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:21.668 -07 000000569 INF: FPGA: Recv ZSGSRD 35536
17-03-17 22:16:21.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:16:21.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:21.678 -07 000000627 INF: FPGA: Recv ZSGSRD 35542
17-03-17 22:16:21.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:21.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:21.688 -07 000000569 INF: FPGA: Recv ZSGSRD 35538
17-03-17 22:16:21.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:21.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:21.698 -07 000000569 INF: FPGA: Recv ZSGSRD 35539
17-03-17 22:16:21.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:21.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:21.708 -07 000000627 INF: FPGA: Recv ZSGSRD 35542
17-03-17 22:16:21.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:21.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:21.718 -07 000000012 INF: FPGA: Recv ZSGSRD 35542
17-03-17 22:16:21.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:21.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:21.728 -07 000000627 INF: FPGA: Recv ZSGSRD 35543
17-03-17 22:16:21.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:21.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:21.738 -07 000000627 INF: FPGA: Recv ZSGSRD 35537
17-03-17 22:16:21.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:21.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:21.748 -07 000000012 INF: FPGA: Recv ZSGSRD 35541
17-03-17 22:16:21.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:21.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:21.758 -07 000000429 INF: FPGA: Recv ZSGSRD 35539
17-03-17 22:16:21.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:21.768 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:16:21.768 -07 000000429 INF: FPGA: Recv ZPIEZORD 31495
17-03-17 22:16:21.778 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:21.778 -07 000000610 INF: Z Motor: Piezo is near 47.3 V (nominally 0 to 100 V), expect near 56.2 V, since DAC is at 5.621 V. Piezo Error = -8.9 V.
17-03-17 22:16:21.778 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.6 um, Read 10 ADC samples: Avg = 35540 (-167.8 uncal um), Error = 0.9 uncal um, Median = 35540 (-167.8 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 35536 (-167.7 uncal um), Max = 35543 (-167.8 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 22:16:21.778 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35540, posNoise = 3, negNoise = 4
17-03-17 22:16:21.778 -07 000000610 INF: Z Motor: After move to -0.168629, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:16:21.778 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 22:16:21.778 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:16:21.778 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:16:21.778 -07 000000478 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:16:21.778 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:16:21.778 -07 000000429 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:16:21.778 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:16:21.778 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:16:21.778 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:16:21.778 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 3 ms.
17-03-17 22:16:21.778 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:16:21.778 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 4 ms.
17-03-17 22:16:21.778 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:16:21.788 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 22:16:21.788 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:16:21.788 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:16:21.788 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:16:21.798 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 22:16:21.798 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 22:16:21.798 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 22:16:21.798 -07 000000429 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 22:16:21.798 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 448 448 215 215 37014 150\n [Camera]
17-03-17 22:16:21.958 -07 000000431 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:16:21.958 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 60. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=959, R2=982, Total=1941. Warn if over 250 bubbles per interval.
17-03-17 22:16:21.998 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:16:22.448 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 640
17-03-17 22:16:22.448 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 640
17-03-17 22:16:22.448 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:16:22.448 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:16:22.448 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) start.
17-03-17 22:16:22.448 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 640
17-03-17 22:16:22.448 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 640
17-03-17 22:16:22.448 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:16:22.448 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:16:22.448 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) start.
17-03-17 22:16:22.638 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37014 833
17-03-17 22:16:22.788 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP turning grn on 983
17-03-17 22:16:22.828 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 22:16:22.828 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 22:16:22.828 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:16:22.828 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) end. Duration was 379 ms.
17-03-17 22:16:22.828 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-17 22:16:22.828 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:16:22.828 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:16:22.828 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:16:22.828 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 22:16:22.838 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 22:16:22.998 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1198
17-03-17 22:16:22.998 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1198
17-03-17 22:16:23.008 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:16:23.138 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1198
17-03-17 22:16:23.138 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1198
17-03-17 22:16:23.138 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:16:23.138 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:16:23.138 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 22:16:23.138 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:16:23.138 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-17 22:16:23.148 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 61, FrontChillerTemperature: 3.997626,
17-03-17 22:16:23.198 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP 1390
17-03-17 22:16:23.198 -07 000000431 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:16:23.198 -07 000000610 INF: FPGA: 'CAMDBLSNAP 448 448 215 215 37014 150' command took 2 ms to send, 1390 ms to get response, and 1397 ms overall
17-03-17 22:16:23.198 -07 000000610 INF: Skipping AutoFocus in Tile 13: adopting Best-Z from the cache: -0.168905
17-03-17 22:16:23.198 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.16891 mm
17-03-17 22:16:23.198 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:16:23.198 -07 000000448 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-17 22:16:23.198 -07 000000448 INF: Y Motor: Moving to 69.8726 mm, started at 69.0269 mm, delta = 0.8458 mm
17-03-17 22:16:23.198 -07 000000448 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:16:23.198 -07 000000569 INF: Z Motor: Entering MoveAbsStepped (DAC = 36897, sync = True, waitForSettling = False)
17-03-17 22:16:23.198 -07 000000569 INF: Z Motor: Moving to -0.168904 mm, started at -0.168640 mm, distance = -0.26 um
17-03-17 22:16:23.198 -07 000000431 INF: FPGA: Recv YRDPOS 141367
17-03-17 22:16:23.208 -07 000000448 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 22:16:23.208 -07 000000448 INF: Y Motor: Encoder = 141367 = motor step 110443.0 = 69.0269 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:16:23.208 -07 000000448 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:16:23.208 -07 000000448 INF: Y Motor: Moving 1353 steps-33
17-03-17 22:16:23.208 -07 000000569 INF: FPGA: Xmit ZDACW 36897\n [Z Motor]
17-03-17 22:16:23.208 -07 000000623 INF: FPGA: Recv ZDACW
17-03-17 22:16:23.218 -07 000000569 INF: FPGA: 'ZDACW 36897' command took 1 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 22:16:23.218 -07 000000448 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:16:23.228 -07 000000569 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:16:23.228 -07 000000462 INF: FPGA: Recv ZDACR 36897
17-03-17 22:16:23.238 -07 000000569 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:16:23.238 -07 000000569 INF: Z Motor: MoveAbsStepped took 34 ms (did NOT wait for settling yet))
17-03-17 22:16:23.538 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 398 ms.
17-03-17 22:16:23.538 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 22:16:23.538 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:16:23.538 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 399 ms.
17-03-17 22:16:23.538 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 22:16:23.538 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:16:23.538 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:16:23.538 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:16:23.538 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 539 ms.
17-03-17 22:16:23.548 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-17 22:16:23.588 -07 000000012 INF: FPGA: Recv YMVTILE
17-03-17 22:16:23.588 -07 000000448 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-17 22:16:23.628 -07 000000448 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:16:23.628 -07 000000627 INF: FPGA: Recv YRDPOS 143078
17-03-17 22:16:23.638 -07 000000448 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 22:16:23.638 -07 000000448 INF: Y Motor: Encoder = 143078 = motor step 111779.7 = 69.8623 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:16:23.638 -07 000000448 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-17 22:16:23.638 -07 000000448 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.846 mm, average velocity = 2.185 mm/sec
17-03-17 22:16:24.588 -07 000000448 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:16:24.588 -07 000000431 INF: FPGA: Recv YRDPOS 143079
17-03-17 22:16:24.598 -07 000000448 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:16:24.598 -07 000000448 INF: Y Motor: Encoder = 143079 = motor step 111780.5 = 69.8628 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:16:24.618 -07 000000448 INF: Y Motor: After move to 69.872612, error = -0.009819, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:16:24.618 -07 000000448 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 22:16:24.618 -07 000000448 INF: Y Motor: Moved to 69.8628 after 1420 ms (table move)
17-03-17 22:16:24.618 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.168904 mm (DAC = 36897)
17-03-17 22:16:24.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:24.628 -07 000000623 INF: FPGA: Recv ZSGSRD 35585
17-03-17 22:16:24.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-17 22:16:24.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:24.628 -07 000000623 INF: FPGA: Recv ZSGSRD 35582
17-03-17 22:16:24.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:16:24.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:24.638 -07 000000431 INF: FPGA: Recv ZSGSRD 35586
17-03-17 22:16:24.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:24.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:24.648 -07 000000448 INF: FPGA: Recv ZSGSRD 35586
17-03-17 22:16:24.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:24.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:24.658 -07 000000623 INF: FPGA: Recv ZSGSRD 35588
17-03-17 22:16:24.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:24.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:24.668 -07 000000431 INF: FPGA: Recv ZSGSRD 35582
17-03-17 22:16:24.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:24.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:24.678 -07 000000623 INF: FPGA: Recv ZSGSRD 35579
17-03-17 22:16:24.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:24.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:24.688 -07 000000623 INF: FPGA: Recv ZSGSRD 35577
17-03-17 22:16:24.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:24.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:24.698 -07 000000627 INF: FPGA: Recv ZSGSRD 35576
17-03-17 22:16:24.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:24.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:24.708 -07 000000627 INF: FPGA: Recv ZSGSRD 35587
17-03-17 22:16:24.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:24.718 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:16:24.718 -07 000000627 INF: FPGA: Recv ZPIEZORD 31579
17-03-17 22:16:24.728 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:24.728 -07 000000610 INF: Z Motor: Piezo is near 47.5 V (nominally 0 to 100 V), expect near 56.3 V, since DAC is at 5.630 V. Piezo Error = -8.8 V.
17-03-17 22:16:24.728 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.9 um, Read 10 ADC samples: Avg = 35583 (-168.0 uncal um), Error = 0.9 uncal um, Median = 35584 (-168.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35576 (-168.0 uncal um), Max = 35588 (-168.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 22:16:24.728 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35583, posNoise = 5, negNoise = 7
17-03-17 22:16:24.728 -07 000000610 INF: Z Motor: After move to -0.168904, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:16:24.728 -07 000000610 INF: Z Motor: Settle wait time = 1423 ms, measure time = 102 ms (allowed 150 ms), total time = 1525 ms
17-03-17 22:16:24.728 -07 000000610 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 22:16:24.778 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1576 ms
17-03-17 22:16:24.778 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:16:24.778 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86279296875, Z-position -0.168916092651415. ----------
17-03-17 22:16:24.778 -07 000000610 INF: Cycle	61	Tile	13	Exposure Settings		A	448	G	215	T	215	C	448
17-03-17 22:16:24.778 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36721, sync = True, waitForSettling = True)
17-03-17 22:16:24.778 -07 000000610 INF: Z Motor: Moving to -0.168098 mm, started at -0.168916 mm, distance = 0.82 um
17-03-17 22:16:24.778 -07 000000610 INF: FPGA: Xmit ZDACW 36721\n [Z Motor]
17-03-17 22:16:24.778 -07 000000627 INF: FPGA: Recv ZDACW
17-03-17 22:16:24.788 -07 000000610 INF: FPGA: 'ZDACW 36721' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 22:16:24.788 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:16:24.788 -07 000000623 INF: FPGA: Recv ZDACR 36721
17-03-17 22:16:24.798 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:24.798 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:16:24.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:24.948 -07 000000448 INF: FPGA: Recv ZSGSRD 35463
17-03-17 22:16:24.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:24.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:24.958 -07 000000623 INF: FPGA: Recv ZSGSRD 35459
17-03-17 22:16:24.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:24.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:24.968 -07 000000627 INF: FPGA: Recv ZSGSRD 35457
17-03-17 22:16:24.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:24.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:24.978 -07 000000623 INF: FPGA: Recv ZSGSRD 35455
17-03-17 22:16:24.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:24.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:24.988 -07 000000448 INF: FPGA: Recv ZSGSRD 35455
17-03-17 22:16:24.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:24.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:24.998 -07 000000623 INF: FPGA: Recv ZSGSRD 35460
17-03-17 22:16:25.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:25.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:25.008 -07 000000623 INF: FPGA: Recv ZSGSRD 35450
17-03-17 22:16:25.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:25.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:25.018 -07 000000627 INF: FPGA: Recv ZSGSRD 35458
17-03-17 22:16:25.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:25.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:25.028 -07 000000627 INF: FPGA: Recv ZSGSRD 35457
17-03-17 22:16:25.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:25.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:25.038 -07 000000627 INF: FPGA: Recv ZSGSRD 35455
17-03-17 22:16:25.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:25.048 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:16:25.048 -07 000000623 INF: FPGA: Recv ZPIEZORD 31404
17-03-17 22:16:25.058 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:25.058 -07 000000610 INF: Z Motor: Piezo is near 47.1 V (nominally 0 to 100 V), expect near 56.0 V, since DAC is at 5.603 V. Piezo Error = -8.9 V.
17-03-17 22:16:25.058 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.1 um, Read 10 ADC samples: Avg = 35457 (-167.2 uncal um), Error = 0.9 uncal um, Median = 35457 (-167.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35450 (-167.2 uncal um), Max = 35463 (-167.3 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 22:16:25.058 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35457, posNoise = 6, negNoise = 7
17-03-17 22:16:25.058 -07 000000610 INF: Z Motor: After move to -0.168098, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:16:25.058 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 22:16:25.058 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:16:25.058 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:16:25.058 -07 000000623 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:16:25.058 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:16:25.058 -07 000000627 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:16:25.058 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:16:25.058 -07 000000623 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:16:25.058 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:16:25.058 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:16:25.058 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:16:25.058 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 22:16:25.058 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:16:25.068 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:16:25.068 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:16:25.068 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:16:25.068 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:16:25.078 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 22:16:25.078 -07 000000623 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 22:16:25.078 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 22:16:25.078 -07 000000627 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 22:16:25.078 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 448 448 215 215 36897 150\n [Camera]
17-03-17 22:16:25.278 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:16:25.728 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 640
17-03-17 22:16:25.728 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 640
17-03-17 22:16:25.728 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:16:25.728 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:16:25.728 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 1406045800, 0x0, 391868352) start.
17-03-17 22:16:25.728 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 640
17-03-17 22:16:25.728 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 640
17-03-17 22:16:25.728 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:16:25.728 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:16:25.728 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) start.
17-03-17 22:16:25.918 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36897 833
17-03-17 22:16:26.068 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP turning grn on 983
17-03-17 22:16:26.098 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 1406045800, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 22:16:26.098 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-17 22:16:26.098 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:16:26.108 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 22:16:26.108 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 22:16:26.108 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:16:26.108 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:16:26.108 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 22:16:26.108 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:16:26.118 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 22:16:26.278 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1198
17-03-17 22:16:26.288 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1198
17-03-17 22:16:26.288 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:16:26.288 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:16:26.288 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 1476890328, 0x0, 391868352) start.
17-03-17 22:16:26.288 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1198
17-03-17 22:16:26.288 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1198
17-03-17 22:16:26.288 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:16:26.408 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:16:26.408 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1406045800, 0x0, 418435064) start.
17-03-17 22:16:26.478 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP 1391
17-03-17 22:16:26.478 -07 000000551 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:16:26.478 -07 000000610 INF: FPGA: 'CAMDBLSNAP 448 448 215 215 36897 150' command took 2 ms to send, 1391 ms to get response, and 1398 ms overall
17-03-17 22:16:26.478 -07 000000610 INF: Skipping AutoFocus in Tile 14: adopting Best-Z from the cache: -0.168567
17-03-17 22:16:26.478 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.16857 mm
17-03-17 22:16:26.478 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:16:26.478 -07 000000627 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-17 22:16:26.478 -07 000000627 INF: Y Motor: Moving to 70.7026 mm, started at 69.8628 mm, delta = 0.8398 mm
17-03-17 22:16:26.478 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:16:26.478 -07 000000561 INF: Z Motor: Entering MoveAbsStepped (DAC = 36823, sync = True, waitForSettling = False)
17-03-17 22:16:26.478 -07 000000561 INF: Z Motor: Moving to -0.168565 mm, started at -0.168107 mm, distance = -0.46 um
17-03-17 22:16:26.478 -07 000000012 INF: FPGA: Recv YRDPOS 143079
17-03-17 22:16:26.488 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:16:26.488 -07 000000561 INF: FPGA: Xmit ZDACW 36823\n [Z Motor]
17-03-17 22:16:26.488 -07 000000627 INF: Y Motor: Encoder = 143079 = motor step 111780.5 = 69.8628 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:16:26.488 -07 000000627 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:16:26.488 -07 000000627 INF: Y Motor: Moving 1344 steps-21
17-03-17 22:16:26.488 -07 000000429 INF: FPGA: Recv ZDACW
17-03-17 22:16:26.498 -07 000000561 INF: FPGA: 'ZDACW 36823' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 22:16:26.498 -07 000000627 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:16:26.508 -07 000000561 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:16:26.508 -07 000000551 INF: FPGA: Recv ZDACR 36823
17-03-17 22:16:26.518 -07 000000561 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 20 ms overall
17-03-17 22:16:26.518 -07 000000561 INF: Z Motor: MoveAbsStepped took 33 ms (did NOT wait for settling yet))
17-03-17 22:16:26.678 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 1476890328, 0x0, 391868352) end. Duration was 393 ms.
17-03-17 22:16:26.678 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 22:16:26.678 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:16:26.678 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:16:26.678 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 22:16:26.798 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1406045800, 0x0, 418435064) end. Duration was 390 ms.
17-03-17 22:16:26.798 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 22:16:26.798 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:16:26.798 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 22:16:26.808 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 518 ms.
17-03-17 22:16:26.868 -07 000000429 INF: FPGA: Recv YMVTILE
17-03-17 22:16:26.868 -07 000000627 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-17 22:16:26.908 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:16:26.908 -07 000000623 INF: FPGA: Recv YRDPOS 144769
17-03-17 22:16:26.918 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 22:16:26.918 -07 000000627 INF: Y Motor: Encoder = 144769 = motor step 113100.8 = 70.6880 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:16:26.918 -07 000000627 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-17 22:16:26.918 -07 000000627 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.840 mm, average velocity = 2.170 mm/sec
17-03-17 22:16:26.958 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:16:26.958 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 60. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=959, R2=982, Total=1941. Warn if over 250 bubbles per interval.
17-03-17 22:16:27.868 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:16:27.868 -07 000000478 INF: FPGA: Recv YRDPOS 144769
17-03-17 22:16:27.878 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:16:27.878 -07 000000627 INF: Y Motor: Encoder = 144769 = motor step 113100.8 = 70.6880 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:16:27.898 -07 000000627 INF: Y Motor: After move to 70.702606, error = -0.014618, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:16:27.898 -07 000000627 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:16:27.898 -07 000000627 INF: Y Motor: Moved to 70.6880 after 1417 ms (table move)
17-03-17 22:16:27.898 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.168565 mm (DAC = 36823)
17-03-17 22:16:27.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:27.898 -07 000000551 INF: FPGA: Recv ZSGSRD 35530
17-03-17 22:16:27.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 22:16:27.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:27.908 -07 000000012 INF: FPGA: Recv ZSGSRD 35527
17-03-17 22:16:27.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:27.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:27.918 -07 000000551 INF: FPGA: Recv ZSGSRD 35525
17-03-17 22:16:27.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:27.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:27.928 -07 000000618 INF: FPGA: Recv ZSGSRD 35530
17-03-17 22:16:27.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:27.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:27.938 -07 000000561 INF: FPGA: Recv ZSGSRD 35535
17-03-17 22:16:27.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:27.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:27.948 -07 000000012 INF: FPGA: Recv ZSGSRD 35535
17-03-17 22:16:27.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:27.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:27.958 -07 000000627 INF: FPGA: Recv ZSGSRD 35529
17-03-17 22:16:27.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:27.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:27.968 -07 000000618 INF: FPGA: Recv ZSGSRD 35531
17-03-17 22:16:27.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:27.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:27.978 -07 000000012 INF: FPGA: Recv ZSGSRD 35530
17-03-17 22:16:27.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:27.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:27.988 -07 000000429 INF: FPGA: Recv ZSGSRD 35529
17-03-17 22:16:27.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:27.998 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:16:27.998 -07 000000551 INF: FPGA: Recv ZPIEZORD 31512
17-03-17 22:16:28.008 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:28.008 -07 000000610 INF: Z Motor: Piezo is near 47.3 V (nominally 0 to 100 V), expect near 56.2 V, since DAC is at 5.619 V. Piezo Error = -8.9 V.
17-03-17 22:16:28.008 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.6 um, Read 10 ADC samples: Avg = 35530 (-167.7 uncal um), Error = 0.9 uncal um, Median = 35530 (-167.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35525 (-167.7 uncal um), Max = 35535 (-167.7 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 22:16:28.008 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35530, posNoise = 5, negNoise = 5
17-03-17 22:16:28.008 -07 000000610 INF: Z Motor: After move to -0.168565, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:16:28.008 -07 000000610 INF: Z Motor: Settle wait time = 1419 ms, measure time = 104 ms (allowed 150 ms), total time = 1523 ms
17-03-17 22:16:28.008 -07 000000610 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 22:16:28.058 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1575 ms
17-03-17 22:16:28.058 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:16:28.058 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.68798828125, Z-position -0.168575609407902. ----------
17-03-17 22:16:28.058 -07 000000610 INF: Cycle	61	Tile	14	Exposure Settings		A	448	G	215	T	215	C	448
17-03-17 22:16:28.058 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36647, sync = True, waitForSettling = True)
17-03-17 22:16:28.058 -07 000000610 INF: Z Motor: Moving to -0.167759 mm, started at -0.168576 mm, distance = 0.82 um
17-03-17 22:16:28.058 -07 000000610 INF: FPGA: Xmit ZDACW 36647\n [Z Motor]
17-03-17 22:16:28.058 -07 000000012 INF: FPGA: Recv ZDACW
17-03-17 22:16:28.068 -07 000000610 INF: FPGA: 'ZDACW 36647' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 22:16:28.068 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:16:28.068 -07 000000618 INF: FPGA: Recv ZDACR 36647
17-03-17 22:16:28.078 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:28.078 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:16:28.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:28.228 -07 000000012 INF: FPGA: Recv ZSGSRD 35402
17-03-17 22:16:28.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:16:28.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:28.238 -07 000000551 INF: FPGA: Recv ZSGSRD 35410
17-03-17 22:16:28.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:28.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:28.248 -07 000000561 INF: FPGA: Recv ZSGSRD 35398
17-03-17 22:16:28.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:28.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:28.258 -07 000000551 INF: FPGA: Recv ZSGSRD 35401
17-03-17 22:16:28.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:28.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:28.268 -07 000000627 INF: FPGA: Recv ZSGSRD 35405
17-03-17 22:16:28.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:28.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:28.278 -07 000000429 INF: FPGA: Recv ZSGSRD 35399
17-03-17 22:16:28.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:28.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:29.228 -07 000000576 INF: FPGA: Recv ZSGSRD 35404
17-03-17 22:16:29.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 930 ms to get response, and 940 ms overall
17-03-17 22:16:29.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:29.228 -07 000000429 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 61, FrontChillerTemperature: 4.009895,
17-03-17 22:16:29.228 -07 000000623 INF: FPGA: Recv ZSGSRD 35414
17-03-17 22:16:29.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:16:29.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:29.248 -07 000000576 INF: FPGA: Recv ZSGSRD 35404
17-03-17 22:16:29.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:16:29.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:29.268 -07 000000623 INF: FPGA: Recv ZSGSRD 35407
17-03-17 22:16:29.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:16:29.278 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:16:29.278 -07 000000561 INF: FPGA: Recv ZPIEZORD 31370
17-03-17 22:16:29.288 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:29.288 -07 000000610 INF: Z Motor: Piezo is near 47.0 V (nominally 0 to 100 V), expect near 55.9 V, since DAC is at 5.592 V. Piezo Error = -8.9 V.
17-03-17 22:16:29.288 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.8 um, Read 10 ADC samples: Avg = 35404 (-166.9 uncal um), Error = 0.9 uncal um, Median = 35404 (-166.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 35398 (-166.9 uncal um), Max = 35414 (-167.0 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 22:16:29.288 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35404, posNoise = 10, negNoise = 6
17-03-17 22:16:29.288 -07 000000610 INF: Z Motor: After move to -0.167759, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:16:29.288 -07 000000610 INF: Z Motor: MoveAbsStepped took 1226 ms)
17-03-17 22:16:29.288 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:16:29.288 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:16:29.288 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:16:29.288 -07 000000486 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:16:29.288 -07 000000623 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:16:29.288 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:16:29.288 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:16:29.288 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:16:29.288 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:16:29.288 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:16:29.288 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:16:29.288 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:16:29.298 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:16:29.298 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:16:29.298 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:16:29.298 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:16:29.308 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 22:16:29.308 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 22:16:29.308 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 22:16:29.308 -07 000000623 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 22:16:29.308 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 448 448 215 215 36823 150\n [Camera]
17-03-17 22:16:29.508 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:16:29.958 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 640
17-03-17 22:16:29.958 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 640
17-03-17 22:16:29.958 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:16:29.958 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:16:29.958 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 22:16:29.958 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 640
17-03-17 22:16:29.958 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 640
17-03-17 22:16:29.958 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:16:29.958 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:16:29.958 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2164362856, 0x0, 418435064) start.
17-03-17 22:16:30.148 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36823 833
17-03-17 22:16:30.298 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning grn on 983
17-03-17 22:16:30.338 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2164362856, 0x0, 418435064) end. Duration was 380 ms.
17-03-17 22:16:30.338 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-17 22:16:30.338 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:16:30.338 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 384 ms.
17-03-17 22:16:30.338 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 22:16:30.338 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:16:30.338 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:16:30.348 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:16:30.348 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 22:16:30.348 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 22:16:30.508 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1198
17-03-17 22:16:30.518 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1198
17-03-17 22:16:30.518 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1198
17-03-17 22:16:30.518 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1198
17-03-17 22:16:30.518 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:16:30.518 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:16:30.518 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 2199785120, 0x0, 391868352) start.
17-03-17 22:16:30.518 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:16:30.518 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:16:30.518 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) start.
17-03-17 22:16:30.698 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP 1391
17-03-17 22:16:30.708 -07 000000576 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:16:30.708 -07 000000610 INF: FPGA: 'CAMDBLSNAP 448 448 215 215 36823 150' command took 2 ms to send, 1390 ms to get response, and 1397 ms overall
17-03-17 22:16:30.708 -07 000000610 INF: Skipping AutoFocus in Tile 15: adopting Best-Z from the cache: -0.168128
17-03-17 22:16:30.708 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.16813 mm
17-03-17 22:16:30.708 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:16:30.708 -07 000000627 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-17 22:16:30.708 -07 000000627 INF: Y Motor: Moving to 71.5326 mm, started at 70.6880 mm, delta = 0.8446 mm
17-03-17 22:16:30.708 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:16:30.708 -07 000000623 INF: Z Motor: Entering MoveAbsStepped (DAC = 36728, sync = True, waitForSettling = False)
17-03-17 22:16:30.708 -07 000000623 INF: Z Motor: Moving to -0.168130 mm, started at -0.167766 mm, distance = -0.36 um
17-03-17 22:16:30.708 -07 000000576 INF: FPGA: Recv YRDPOS 144769
17-03-17 22:16:30.718 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 22:16:30.718 -07 000000623 INF: FPGA: Xmit ZDACW 36728\n [Z Motor]
17-03-17 22:16:30.718 -07 000000627 INF: Y Motor: Encoder = 144769 = motor step 113100.8 = 70.6880 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:16:30.718 -07 000000627 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:16:30.718 -07 000000627 INF: Y Motor: Moving 1351 steps-30
17-03-17 22:16:30.718 -07 000000576 INF: FPGA: Recv ZDACW
17-03-17 22:16:30.728 -07 000000623 INF: FPGA: 'ZDACW 36728' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 22:16:30.728 -07 000000627 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:16:30.738 -07 000000623 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:16:30.738 -07 000000429 INF: FPGA: Recv ZDACR 36728
17-03-17 22:16:30.748 -07 000000623 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:16:30.748 -07 000000623 INF: Z Motor: MoveAbsStepped took 35 ms (did NOT wait for settling yet))
17-03-17 22:16:30.898 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) end. Duration was 380 ms.
17-03-17 22:16:30.898 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-17 22:16:30.898 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:16:30.898 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 2199785120, 0x0, 391868352) end. Duration was 383 ms.
17-03-17 22:16:30.898 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 22:16:30.898 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:16:30.898 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:16:30.898 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:16:30.898 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 22:16:30.908 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 22:16:31.098 -07 000000429 INF: FPGA: Recv YMVTILE
17-03-17 22:16:31.098 -07 000000627 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-17 22:16:31.138 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:16:31.138 -07 000000429 INF: FPGA: Recv YRDPOS 146470
17-03-17 22:16:31.148 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:16:31.148 -07 000000627 INF: Y Motor: Encoder = 146470 = motor step 114429.7 = 71.5186 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:16:31.148 -07 000000627 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-17 22:16:31.148 -07 000000627 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.845 mm, average velocity = 2.182 mm/sec
17-03-17 22:16:31.958 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:16:31.958 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 60. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=959, R2=982, Total=1941. Warn if over 250 bubbles per interval.
17-03-17 22:16:32.098 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:16:32.098 -07 000000431 INF: FPGA: Recv YRDPOS 146470
17-03-17 22:16:32.108 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:16:32.108 -07 000000627 INF: Y Motor: Encoder = 146470 = motor step 114429.7 = 71.5186 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:16:32.128 -07 000000627 INF: Y Motor: After move to 71.532608, error = -0.014053, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:16:32.128 -07 000000627 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:16:32.128 -07 000000627 INF: Y Motor: Moved to 71.5186 after 1419 ms (table move)
17-03-17 22:16:32.128 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.168130 mm (DAC = 36728)
17-03-17 22:16:32.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:32.138 -07 000000551 INF: FPGA: Recv ZSGSRD 35473
17-03-17 22:16:32.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 22:16:32.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:32.138 -07 000000429 INF: FPGA: Recv ZSGSRD 35459
17-03-17 22:16:32.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:32.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:32.148 -07 000000486 INF: FPGA: Recv ZSGSRD 35462
17-03-17 22:16:32.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:32.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:32.158 -07 000000486 INF: FPGA: Recv ZSGSRD 35465
17-03-17 22:16:32.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:32.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:32.168 -07 000000429 INF: FPGA: Recv ZSGSRD 35466
17-03-17 22:16:32.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:32.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:32.178 -07 000000429 INF: FPGA: Recv ZSGSRD 35465
17-03-17 22:16:32.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:32.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:32.188 -07 000000627 INF: FPGA: Recv ZSGSRD 35465
17-03-17 22:16:32.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:32.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:32.198 -07 000000627 INF: FPGA: Recv ZSGSRD 35455
17-03-17 22:16:32.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:32.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:32.208 -07 000000627 INF: FPGA: Recv ZSGSRD 35457
17-03-17 22:16:32.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:32.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:32.218 -07 000000448 INF: FPGA: Recv ZSGSRD 35460
17-03-17 22:16:32.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:32.228 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:16:32.228 -07 000000429 INF: FPGA: Recv ZPIEZORD 31410
17-03-17 22:16:32.238 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:32.238 -07 000000610 INF: Z Motor: Piezo is near 47.1 V (nominally 0 to 100 V), expect near 56.0 V, since DAC is at 5.604 V. Piezo Error = -8.9 V.
17-03-17 22:16:32.238 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.1 um, Read 10 ADC samples: Avg = 35463 (-167.3 uncal um), Error = 0.9 uncal um, Median = 35464 (-167.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 35455 (-167.2 uncal um), Max = 35473 (-167.3 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 22:16:32.238 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35463, posNoise = 10, negNoise = 8
17-03-17 22:16:32.238 -07 000000610 INF: Z Motor: After move to -0.168130, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:16:32.238 -07 000000610 INF: Z Motor: Settle wait time = 1422 ms, measure time = 103 ms (allowed 150 ms), total time = 1525 ms
17-03-17 22:16:32.238 -07 000000610 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 22:16:32.288 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1577 ms
17-03-17 22:16:32.288 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:16:32.288 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.5185546875, Z-position -0.168145187194404. ----------
17-03-17 22:16:32.288 -07 000000610 INF: Cycle	61	Tile	15	Exposure Settings		A	448	G	215	T	215	C	448
17-03-17 22:16:32.288 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36551, sync = True, waitForSettling = True)
17-03-17 22:16:32.288 -07 000000610 INF: Z Motor: Moving to -0.167320 mm, started at -0.168145 mm, distance = 0.83 um
17-03-17 22:16:32.288 -07 000000610 INF: FPGA: Xmit ZDACW 36551\n [Z Motor]
17-03-17 22:16:32.288 -07 000000462 INF: FPGA: Recv ZDACW
17-03-17 22:16:32.298 -07 000000610 INF: FPGA: 'ZDACW 36551' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 22:16:32.298 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:16:32.298 -07 000000012 INF: FPGA: Recv ZDACR 36551
17-03-17 22:16:32.308 -07 000000610 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:32.308 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:16:32.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:32.458 -07 000000627 INF: FPGA: Recv ZSGSRD 35337
17-03-17 22:16:32.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:16:32.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:32.468 -07 000000618 INF: FPGA: Recv ZSGSRD 35338
17-03-17 22:16:32.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:32.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:32.478 -07 000000561 INF: FPGA: Recv ZSGSRD 35335
17-03-17 22:16:32.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:32.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:32.488 -07 000000448 INF: FPGA: Recv ZSGSRD 35341
17-03-17 22:16:32.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:32.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:32.498 -07 000000012 INF: FPGA: Recv ZSGSRD 35343
17-03-17 22:16:32.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:32.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:32.508 -07 000000431 INF: FPGA: Recv ZSGSRD 35338
17-03-17 22:16:32.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:32.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:32.518 -07 000000478 INF: FPGA: Recv ZSGSRD 35332
17-03-17 22:16:32.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:32.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:32.528 -07 000000448 INF: FPGA: Recv ZSGSRD 35334
17-03-17 22:16:32.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:32.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:32.538 -07 000000551 INF: FPGA: Recv ZSGSRD 35340
17-03-17 22:16:32.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:32.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:32.548 -07 000000561 INF: FPGA: Recv ZSGSRD 35332
17-03-17 22:16:32.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:32.558 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:16:32.558 -07 000000623 INF: FPGA: Recv ZPIEZORD 31272
17-03-17 22:16:32.568 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:32.568 -07 000000610 INF: Z Motor: Piezo is near 46.8 V (nominally 0 to 100 V), expect near 55.8 V, since DAC is at 5.577 V. Piezo Error = -9.0 V.
17-03-17 22:16:32.568 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.3 um, Read 10 ADC samples: Avg = 35337 (-166.5 uncal um), Error = 0.9 uncal um, Median = 35338 (-166.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35332 (-166.4 uncal um), Max = 35343 (-166.5 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 22:16:32.568 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35337, posNoise = 6, negNoise = 5
17-03-17 22:16:32.568 -07 000000610 INF: Z Motor: After move to -0.167320, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:16:32.568 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 22:16:32.568 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:16:32.568 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:16:32.568 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:16:32.568 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:16:32.568 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:16:32.568 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:16:32.568 -07 000000429 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:16:32.568 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:16:32.568 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:16:32.568 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:16:32.568 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:16:32.568 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:16:32.568 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:16:32.568 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:16:32.578 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:16:32.578 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:16:32.578 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 22:16:32.578 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 22:16:32.578 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 22:16:32.578 -07 000000429 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 22:16:32.588 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 448 448 215 215 36728 150\n [Camera]
17-03-17 22:16:32.788 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:16:33.228 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 640
17-03-17 22:16:33.238 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 640
17-03-17 22:16:33.238 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:16:33.238 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:16:33.238 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-17 22:16:33.238 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 640
17-03-17 22:16:33.238 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 640
17-03-17 22:16:33.238 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:16:33.238 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:16:33.238 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-17 22:16:33.428 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36728 833
17-03-17 22:16:33.578 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning grn on 983
17-03-17 22:16:33.608 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 22:16:33.608 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 22:16:33.608 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:16:33.608 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 22:16:33.608 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 22:16:33.608 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:16:33.618 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 22:16:33.618 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 22:16:33.618 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 22:16:33.628 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 22:16:33.788 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1198
17-03-17 22:16:33.788 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1198
17-03-17 22:16:33.788 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:16:33.788 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:16:33.788 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) start.
17-03-17 22:16:33.798 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1198
17-03-17 22:16:33.798 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1198
17-03-17 22:16:33.798 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:16:33.798 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:16:33.798 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 22:16:33.978 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP 1391
17-03-17 22:16:33.978 -07 000000551 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:16:33.978 -07 000000610 INF: FPGA: 'CAMDBLSNAP 448 448 215 215 36728 150' command took 2 ms to send, 1389 ms to get response, and 1397 ms overall
17-03-17 22:16:33.988 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 22:16:33.988 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.5185546875, Z-Position -0.167335736464542. ------
17-03-17 22:16:33.988 -07 000000486 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:16:33.988 -07 000000012 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.17367 mm
17-03-17 22:16:33.988 -07 000000012 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:16:33.988 -07 000000569 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-17 22:16:33.988 -07 000000569 INF: Y Motor: Moving to 72.3626 mm, started at 71.5186 mm, delta = 0.8441 mm
17-03-17 22:16:33.988 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:16:33.988 -07 000000429 INF: Z Motor: Entering MoveAbsStepped (DAC = 37939, sync = True, waitForSettling = False)
17-03-17 22:16:33.988 -07 000000429 INF: Z Motor: Moving to -0.173674 mm, started at -0.167336 mm, distance = -6.34 um
17-03-17 22:16:33.998 -07 000000486 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 22:16:33.998 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:16:33.998 -07 000000576 INF: FPGA: Recv YRDPOS 146470
17-03-17 22:16:34.008 -07 000000429 INF: FPGA: Xmit ZDACW 37939\n [Z Motor]
17-03-17 22:16:34.008 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 22:16:34.008 -07 000000569 INF: Y Motor: Encoder = 146470 = motor step 114429.7 = 71.5186 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:16:34.008 -07 000000569 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:16:34.008 -07 000000569 INF: Y Motor: Moving 1350 steps-29
17-03-17 22:16:34.008 -07 000000551 INF: FPGA: Recv ZDACW
17-03-17 22:16:34.018 -07 000000486 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:16:34.018 -07 000000429 INF: FPGA: 'ZDACW 37939' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-17 22:16:34.028 -07 000000569 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:16:34.038 -07 000000429 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:16:34.038 -07 000000462 INF: FPGA: Recv ZDACR 37939
17-03-17 22:16:34.048 -07 000000429 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:16:34.048 -07 000000429 INF: Z Motor: MoveAbsStepped took 51 ms (did NOT wait for settling yet))
17-03-17 22:16:34.178 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 22:16:34.178 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 22:16:34.178 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:16:34.178 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 380 ms.
17-03-17 22:16:34.178 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-17 22:16:34.178 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:16:34.178 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:16:34.178 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 22:16:34.178 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:16:34.188 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 22:16:34.218 -07 000000627 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:16:34.218 -07 000000486 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 22:16:34.398 -07 000000448 INF: FPGA: Recv YMVTILE
17-03-17 22:16:34.398 -07 000000569 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 22:16:34.438 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:16:34.448 -07 000000627 INF: FPGA: Recv YRDPOS 148171
17-03-17 22:16:34.448 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 22:16:34.448 -07 000000569 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:16:34.448 -07 000000569 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 22:16:34.448 -07 000000569 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.844 mm, average velocity = 2.126 mm/sec
17-03-17 22:16:34.628 -07 000000623 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 61, FrontChillerTemperature: 4.008536,
17-03-17 22:16:35.398 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:16:35.398 -07 000000448 INF: FPGA: Recv YRDPOS 148171
17-03-17 22:16:35.408 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:16:35.408 -07 000000569 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:16:35.428 -07 000000569 INF: Y Motor: After move to 72.362610, error = -0.013489, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:16:35.428 -07 000000569 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:16:35.428 -07 000000569 INF: Y Motor: Moved to 72.3491 after 1438 ms (table move)
17-03-17 22:16:35.428 -07 000000012 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173674 mm (DAC = 37939)
17-03-17 22:16:35.428 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:35.438 -07 000000569 INF: FPGA: Recv ZSGSRD 36329
17-03-17 22:16:35.438 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 22:16:35.438 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:35.438 -07 000000448 INF: FPGA: Recv ZSGSRD 36325
17-03-17 22:16:35.448 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:16:35.448 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:35.448 -07 000000486 INF: FPGA: Recv ZSGSRD 36331
17-03-17 22:16:35.458 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:35.458 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:35.458 -07 000000618 INF: FPGA: Recv ZSGSRD 36326
17-03-17 22:16:35.468 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:35.468 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:35.468 -07 000000569 INF: FPGA: Recv ZSGSRD 36325
17-03-17 22:16:35.478 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:35.478 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:35.478 -07 000000618 INF: FPGA: Recv ZSGSRD 36324
17-03-17 22:16:35.488 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:35.488 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:35.488 -07 000000623 INF: FPGA: Recv ZSGSRD 36322
17-03-17 22:16:35.498 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:35.498 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:35.498 -07 000000569 INF: FPGA: Recv ZSGSRD 36327
17-03-17 22:16:35.508 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:35.508 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:35.508 -07 000000569 INF: FPGA: Recv ZSGSRD 36320
17-03-17 22:16:35.518 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:35.518 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:35.518 -07 000000618 INF: FPGA: Recv ZSGSRD 36322
17-03-17 22:16:35.528 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:35.528 -07 000000012 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:16:35.528 -07 000000569 INF: FPGA: Recv ZPIEZORD 32577
17-03-17 22:16:35.538 -07 000000012 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:35.538 -07 000000012 INF: Z Motor: Piezo is near 49.6 V (nominally 0 to 100 V), expect near 57.9 V, since DAC is at 5.789 V. Piezo Error = -8.3 V.
17-03-17 22:16:35.538 -07 000000012 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.7 um, Read 10 ADC samples: Avg = 36325 (-172.8 uncal um), Error = 0.9 uncal um, Median = 36325 (-172.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36320 (-172.8 uncal um), Max = 36331 (-172.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 22:16:35.538 -07 000000012 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36325, posNoise = 6, negNoise = 5
17-03-17 22:16:35.538 -07 000000012 INF: Z Motor: After move to -0.173674, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:16:35.538 -07 000000012 INF: Z Motor: Settle wait time = 1440 ms, measure time = 102 ms (allowed 150 ms), total time = 1542 ms
17-03-17 22:16:35.538 -07 000000012 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 22:16:35.588 -07 000000012 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1595 ms
17-03-17 22:16:35.588 -07 000000012 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:16:35.588 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:16:35.588 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:16:35.588 -07 000000486 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:16:35.588 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:16:35.588 -07 000000012 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:16:35.588 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:16:35.588 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:16:35.588 -07 000000012 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:16:35.598 -07 000000012 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:16:35.598 -07 000000012 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:16:35.608 -07 000000012 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 22:16:35.608 -07 000000012 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 19 ms.
17-03-17 22:16:35.608 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:16:35.658 -07 000000618 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:16:35.858 -07 000000486 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:16:35.858 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:16:35.858 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:16:35.978 -07 000000448 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:16:35.978 -07 000000448 INF: FPGA: Recv CAMSNAP
17-03-17 22:16:35.978 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1441861448, 0x0, 559484976) start.
17-03-17 22:16:35.978 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 363 ms to get response, and 365 ms overall
17-03-17 22:16:36.098 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1441861448, 0x0, 559484976) end. Duration was 125 ms.
17-03-17 22:16:36.098 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:16:36.108 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 22:16:36.108 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 246 ms.
17-03-17 22:16:36.178 -07 000000569 INF: Autofocus start
17-03-17 22:16:36.178 -07 000000569 INF: MeasureProfile start
17-03-17 22:16:36.178 -07 000000623 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:16:36.178 -07 000000478 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:16:36.188 -07 000000623 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:16:36.188 -07 000000623 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:16:36.188 -07 000000569 INF: MeasureProfile done
17-03-17 22:16:36.188 -07 000000569 INF: X=96  Z correction [um]=0.4193256
17-03-17 22:16:36.188 -07 000000569 INF: Autofocus finished
17-03-17 22:16:36.388 -07 000000576 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:16:36.388 -07 000000623 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 205 ms overall
17-03-17 22:16:36.398 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.34912109375, Z-position -0.173682858060602. ----------
17-03-17 22:16:36.398 -07 000000610 INF: Cycle	61	Tile	16	Exposure Settings		A	448	G	215	T	215	C	448
17-03-17 22:16:36.398 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36543, sync = True, waitForSettling = True)
17-03-17 22:16:36.398 -07 000000610 INF: Z Motor: Moving to -0.167283 mm, started at -0.173683 mm, distance = 6.40 um
17-03-17 22:16:36.398 -07 000000610 INF: FPGA: Xmit ZDACW 36543\n [Z Motor]
17-03-17 22:16:36.398 -07 000000551 INF: FPGA: Recv ZDACW
17-03-17 22:16:36.408 -07 000000610 INF: FPGA: 'ZDACW 36543' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 22:16:36.408 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:16:36.408 -07 000000012 INF: FPGA: Recv ZDACR 36543
17-03-17 22:16:36.418 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:36.418 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:16:36.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:36.568 -07 000000486 INF: FPGA: Recv ZSGSRD 35329
17-03-17 22:16:36.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:16:36.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:36.578 -07 000000012 INF: FPGA: Recv ZSGSRD 35333
17-03-17 22:16:36.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:36.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:36.588 -07 000000486 INF: FPGA: Recv ZSGSRD 35331
17-03-17 22:16:36.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:36.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:36.598 -07 000000448 INF: FPGA: Recv ZSGSRD 35329
17-03-17 22:16:36.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:36.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:36.608 -07 000000576 INF: FPGA: Recv ZSGSRD 35331
17-03-17 22:16:36.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:36.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:36.618 -07 000000569 INF: FPGA: Recv ZSGSRD 35328
17-03-17 22:16:36.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:36.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:36.628 -07 000000623 INF: FPGA: Recv ZSGSRD 35336
17-03-17 22:16:36.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:36.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:36.638 -07 000000569 INF: FPGA: Recv ZSGSRD 35334
17-03-17 22:16:36.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:36.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:36.648 -07 000000576 INF: FPGA: Recv ZSGSRD 35330
17-03-17 22:16:36.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:36.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:36.658 -07 000000623 INF: FPGA: Recv ZSGSRD 35331
17-03-17 22:16:36.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:36.668 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:16:36.668 -07 000000012 INF: FPGA: Recv ZPIEZORD 31262
17-03-17 22:16:36.678 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:36.678 -07 000000610 INF: Z Motor: Piezo is near 46.8 V (nominally 0 to 100 V), expect near 55.8 V, since DAC is at 5.576 V. Piezo Error = -9.0 V.
17-03-17 22:16:36.678 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.3 um, Read 10 ADC samples: Avg = 35331 (-166.4 uncal um), Error = 0.9 uncal um, Median = 35331 (-166.4 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35328 (-166.4 uncal um), Max = 35336 (-166.5 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 22:16:36.678 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35331, posNoise = 5, negNoise = 3
17-03-17 22:16:36.678 -07 000000610 INF: Z Motor: After move to -0.167283, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:16:36.678 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-17 22:16:36.678 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:16:36.678 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:16:36.678 -07 000000448 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:16:36.678 -07 000000486 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:16:36.678 -07 000000478 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:16:36.678 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:16:36.678 -07 000000551 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:16:36.678 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:16:36.678 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:16:36.678 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:16:36.678 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:16:36.678 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:16:36.688 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:16:36.688 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:16:36.688 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:16:36.688 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:16:36.698 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 22:16:36.698 -07 000000551 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 22:16:36.698 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 22:16:36.698 -07 000000478 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 22:16:36.698 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 448 448 215 215 36720 150\n [Camera]
17-03-17 22:16:36.898 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:16:36.958 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:16:36.958 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 60. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=959, R2=982, Total=1941. Warn if over 250 bubbles per interval.
17-03-17 22:16:37.348 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 640
17-03-17 22:16:37.348 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 640
17-03-17 22:16:37.348 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:16:37.348 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 640
17-03-17 22:16:37.348 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 640
17-03-17 22:16:37.348 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:16:37.348 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:16:37.348 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 22:16:37.348 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:16:37.348 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1406045800, 0x0, 391868352) start.
17-03-17 22:16:37.538 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36720 833
17-03-17 22:16:37.688 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning grn on 983
17-03-17 22:16:37.728 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1406045800, 0x0, 391868352) end. Duration was 375 ms.
17-03-17 22:16:37.728 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-17 22:16:37.728 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:16:37.728 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 22:16:37.728 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-17 22:16:37.728 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:16:37.728 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:16:37.728 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 22:16:37.728 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:16:37.738 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 22:16:37.898 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1198
17-03-17 22:16:37.898 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1198
17-03-17 22:16:37.898 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:16:37.898 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:16:37.898 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 1452132224, 0x0, 391868352) start.
17-03-17 22:16:37.908 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1198
17-03-17 22:16:37.908 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1198
17-03-17 22:16:37.908 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:16:38.018 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:16:38.018 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 22:16:38.088 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP 1391
17-03-17 22:16:38.098 -07 000000618 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:16:38.098 -07 000000610 INF: FPGA: 'CAMDBLSNAP 448 448 215 215 36720 150' command took 2 ms to send, 1390 ms to get response, and 1398 ms overall
17-03-17 22:16:38.098 -07 000000610 INF: Skipping AutoFocus in Tile 17: adopting Best-Z from the cache: -0.167806
17-03-17 22:16:38.098 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.16781 mm
17-03-17 22:16:38.098 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:16:38.098 -07 000000486 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-17 22:16:38.098 -07 000000486 INF: Y Motor: Moving to 73.1926 mm, started at 72.3491 mm, delta = 0.8435 mm
17-03-17 22:16:38.098 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:16:38.098 -07 000000569 INF: Z Motor: Entering MoveAbsStepped (DAC = 36657, sync = True, waitForSettling = False)
17-03-17 22:16:38.098 -07 000000569 INF: Z Motor: Moving to -0.167805 mm, started at -0.167297 mm, distance = -0.51 um
17-03-17 22:16:38.098 -07 000000448 INF: FPGA: Recv YRDPOS 148171
17-03-17 22:16:38.108 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 22:16:38.108 -07 000000486 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:16:38.108 -07 000000486 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:16:38.108 -07 000000486 INF: Y Motor: Moving 1350 steps-28
17-03-17 22:16:38.108 -07 000000486 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:16:38.118 -07 000000569 INF: FPGA: Xmit ZDACW 36657\n [Z Motor]
17-03-17 22:16:38.118 -07 000000623 INF: FPGA: Recv ZDACW
17-03-17 22:16:38.128 -07 000000569 INF: FPGA: 'ZDACW 36657' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-17 22:16:38.128 -07 000000569 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:16:38.128 -07 000000448 INF: FPGA: Recv ZDACR 36657
17-03-17 22:16:38.138 -07 000000569 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:38.138 -07 000000569 INF: Z Motor: MoveAbsStepped took 34 ms (did NOT wait for settling yet))
17-03-17 22:16:38.298 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 1452132224, 0x0, 391868352) end. Duration was 392 ms.
17-03-17 22:16:38.298 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 22:16:38.298 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:16:38.298 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 22:16:38.298 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 22:16:38.408 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 391 ms.
17-03-17 22:16:38.408 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 22:16:38.408 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:16:38.418 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:16:38.418 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 516 ms.
17-03-17 22:16:38.478 -07 000000618 INF: FPGA: Recv YMVTILE
17-03-17 22:16:38.478 -07 000000486 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 378 ms overall
17-03-17 22:16:38.518 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:16:38.518 -07 000000618 INF: FPGA: Recv YRDPOS 149863
17-03-17 22:16:38.528 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:16:38.528 -07 000000486 INF: Y Motor: Encoder = 149863 = motor step 117080.5 = 73.1753 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:16:38.528 -07 000000486 INF: Y Motor: Position error before settling (table move) = -35 encoder counts (-0.017 mm)
17-03-17 22:16:38.528 -07 000000486 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.843 mm, average velocity = 2.231 mm/sec
17-03-17 22:16:39.478 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:16:39.478 -07 000000448 INF: FPGA: Recv YRDPOS 149864
17-03-17 22:16:39.488 -07 000000486 INF: FPGA: 'YRDPOS' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:39.488 -07 000000486 INF: Y Motor: Encoder = 149864 = motor step 117081.3 = 73.1758 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:16:39.508 -07 000000486 INF: Y Motor: After move to 73.192604, error = -0.016823, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:16:39.508 -07 000000486 INF: Y Motor: Position error after settling (table move) = -34 encoder counts (-0.017 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 22:16:39.508 -07 000000486 INF: Y Motor: Moved to 73.1758 after 1408 ms (table move)
17-03-17 22:16:39.508 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.167805 mm (DAC = 36657)
17-03-17 22:16:39.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:39.508 -07 000000448 INF: FPGA: Recv ZSGSRD 35409
17-03-17 22:16:39.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:16:39.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:39.518 -07 000000448 INF: FPGA: Recv ZSGSRD 35408
17-03-17 22:16:39.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:39.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:39.528 -07 000000448 INF: FPGA: Recv ZSGSRD 35410
17-03-17 22:16:39.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:39.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:39.538 -07 000000569 INF: FPGA: Recv ZSGSRD 35419
17-03-17 22:16:39.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:39.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:39.548 -07 000000448 INF: FPGA: Recv ZSGSRD 35417
17-03-17 22:16:39.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:39.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:39.558 -07 000000448 INF: FPGA: Recv ZSGSRD 35413
17-03-17 22:16:39.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:39.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:39.568 -07 000000448 INF: FPGA: Recv ZSGSRD 35412
17-03-17 22:16:39.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:39.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:39.578 -07 000000551 INF: FPGA: Recv ZSGSRD 35409
17-03-17 22:16:39.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:39.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:39.588 -07 000000551 INF: FPGA: Recv ZSGSRD 35413
17-03-17 22:16:39.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:39.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:39.598 -07 000000627 INF: FPGA: Recv ZSGSRD 35409
17-03-17 22:16:39.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:39.608 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:16:39.608 -07 000000627 INF: FPGA: Recv ZPIEZORD 31408
17-03-17 22:16:39.618 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:39.618 -07 000000610 INF: Z Motor: Piezo is near 47.1 V (nominally 0 to 100 V), expect near 55.9 V, since DAC is at 5.594 V. Piezo Error = -8.8 V.
17-03-17 22:16:39.618 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.8 um, Read 10 ADC samples: Avg = 35412 (-166.9 uncal um), Error = 0.9 uncal um, Median = 35411 (-166.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35408 (-166.9 uncal um), Max = 35419 (-167.0 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 22:16:39.618 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35412, posNoise = 7, negNoise = 4
17-03-17 22:16:39.618 -07 000000610 INF: Z Motor: After move to -0.167805, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:16:39.618 -07 000000610 INF: Z Motor: Settle wait time = 1410 ms, measure time = 105 ms (allowed 150 ms), total time = 1515 ms
17-03-17 22:16:39.618 -07 000000610 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 22:16:39.668 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1567 ms
17-03-17 22:16:39.668 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:16:39.668 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.17578125, Z-position -0.167817552375174. ----------
17-03-17 22:16:39.668 -07 000000610 INF: Cycle	61	Tile	17	Exposure Settings		A	448	G	215	T	215	C	448
17-03-17 22:16:39.668 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36480, sync = True, waitForSettling = True)
17-03-17 22:16:39.668 -07 000000610 INF: Z Motor: Moving to -0.166995 mm, started at -0.167818 mm, distance = 0.82 um
17-03-17 22:16:39.678 -07 000000610 INF: FPGA: Xmit ZDACW 36480\n [Z Motor]
17-03-17 22:16:39.678 -07 000000569 INF: FPGA: Recv ZDACW
17-03-17 22:16:39.688 -07 000000610 INF: FPGA: 'ZDACW 36480' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 22:16:39.688 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:16:39.688 -07 000000569 INF: FPGA: Recv ZDACR 36480
17-03-17 22:16:39.698 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:39.698 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:16:39.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:39.848 -07 000000623 INF: FPGA: Recv ZSGSRD 35290
17-03-17 22:16:39.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:16:39.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:39.858 -07 000000569 INF: FPGA: Recv ZSGSRD 35290
17-03-17 22:16:39.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:39.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:39.868 -07 000000486 INF: FPGA: Recv ZSGSRD 35287
17-03-17 22:16:39.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:16:39.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:39.878 -07 000000627 INF: FPGA: Recv ZSGSRD 35280
17-03-17 22:16:39.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:39.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:39.888 -07 000000576 INF: FPGA: Recv ZSGSRD 35281
17-03-17 22:16:39.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:39.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:39.898 -07 000000486 INF: FPGA: Recv ZSGSRD 35288
17-03-17 22:16:39.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:39.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:39.908 -07 000000486 INF: FPGA: Recv ZSGSRD 35283
17-03-17 22:16:39.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:39.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:39.918 -07 000000627 INF: FPGA: Recv ZSGSRD 35284
17-03-17 22:16:39.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:39.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:39.928 -07 000000627 INF: FPGA: Recv ZSGSRD 35286
17-03-17 22:16:39.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:39.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:39.938 -07 000000627 INF: FPGA: Recv ZSGSRD 35287
17-03-17 22:16:39.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:39.948 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:16:39.948 -07 000000627 INF: FPGA: Recv ZPIEZORD 31223
17-03-17 22:16:39.958 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:39.958 -07 000000610 INF: Z Motor: Piezo is near 46.7 V (nominally 0 to 100 V), expect near 55.7 V, since DAC is at 5.566 V. Piezo Error = -9.0 V.
17-03-17 22:16:39.958 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.0 um, Read 10 ADC samples: Avg = 35286 (-166.1 uncal um), Error = 0.9 uncal um, Median = 35286 (-166.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35280 (-166.1 uncal um), Max = 35290 (-166.2 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 22:16:39.958 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35286, posNoise = 4, negNoise = 6
17-03-17 22:16:39.958 -07 000000610 INF: Z Motor: After move to -0.166995, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:16:39.958 -07 000000610 INF: Z Motor: MoveAbsStepped took 285 ms)
17-03-17 22:16:39.958 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:16:39.958 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:16:39.958 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:16:39.958 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:16:39.958 -07 000000486 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:16:39.958 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:16:39.958 -07 000000627 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:16:39.958 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:16:39.958 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:16:39.958 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:16:39.958 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:16:39.958 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:16:39.968 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:16:39.968 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:16:39.968 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:16:39.968 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:16:39.968 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 22:16:39.968 -07 000000627 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 22:16:39.968 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 22:16:39.968 -07 000000486 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 22:16:39.988 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 448 448 215 215 36657 150\n [Camera]
17-03-17 22:16:39.988 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 61, FrontChillerTemperature: 3.989471,
17-03-17 22:16:40.178 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:16:40.628 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 640
17-03-17 22:16:40.628 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 640
17-03-17 22:16:40.628 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:16:40.638 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 640
17-03-17 22:16:40.638 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 640
17-03-17 22:16:40.638 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:16:40.638 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:16:40.638 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 1487554488, 0x0, 418435064) start.
17-03-17 22:16:40.638 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:16:40.638 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 1406045800, 0x0, 391868352) start.
17-03-17 22:16:40.828 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36657 833
17-03-17 22:16:40.978 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning grn on 986
17-03-17 22:16:41.018 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 1406045800, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 22:16:41.018 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 22:16:41.018 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:16:41.018 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 1487554488, 0x0, 418435064) end. Duration was 384 ms.
17-03-17 22:16:41.018 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-17 22:16:41.018 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:16:41.028 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 22:16:41.028 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 22:16:41.028 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:16:41.028 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 22:16:41.188 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1198
17-03-17 22:16:41.188 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1198
17-03-17 22:16:41.188 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:16:41.188 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:16:41.188 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 2164362856, 0x0, 391868352) start.
17-03-17 22:16:41.188 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1198
17-03-17 22:16:41.188 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1198
17-03-17 22:16:41.198 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:16:41.198 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:16:41.198 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2199785120, 0x0, 418435064) start.
17-03-17 22:16:41.378 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP 1391
17-03-17 22:16:41.378 -07 000000429 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:16:41.378 -07 000000610 INF: FPGA: 'CAMDBLSNAP 448 448 215 215 36657 150' command took 2 ms to send, 1388 ms to get response, and 1404 ms overall
17-03-17 22:16:41.378 -07 000000610 INF: Skipping AutoFocus in Tile 18: adopting Best-Z from the cache: -0.167376
17-03-17 22:16:41.388 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.16738 mm
17-03-17 22:16:41.388 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:16:41.388 -07 000000561 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-17 22:16:41.388 -07 000000627 INF: Z Motor: Entering MoveAbsStepped (DAC = 36563, sync = True, waitForSettling = False)
17-03-17 22:16:41.388 -07 000000627 INF: Z Motor: Moving to -0.167375 mm, started at -0.167008 mm, distance = -0.37 um
17-03-17 22:16:41.388 -07 000000627 INF: FPGA: Xmit ZDACW 36563\n [Z Motor]
17-03-17 22:16:41.388 -07 000000561 INF: Y Motor: Moving to 74.0226 mm, started at 73.1758 mm, delta = 0.8468 mm
17-03-17 22:16:41.388 -07 000000429 INF: FPGA: Recv ZDACW
17-03-17 22:16:41.398 -07 000000627 INF: FPGA: 'ZDACW 36563' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:16:41.398 -07 000000627 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:16:41.398 -07 000000576 INF: FPGA: Recv ZDACR 36563
17-03-17 22:16:41.408 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:16:41.408 -07 000000627 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:41.408 -07 000000627 INF: Z Motor: MoveAbsStepped took 16 ms (did NOT wait for settling yet))
17-03-17 22:16:41.408 -07 000000429 INF: FPGA: Recv YRDPOS 149864
17-03-17 22:16:41.418 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-17 22:16:41.418 -07 000000561 INF: Y Motor: Encoder = 149864 = motor step 117081.3 = 73.1758 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:16:41.418 -07 000000561 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:16:41.418 -07 000000561 INF: Y Motor: Moving 1355 steps-35
17-03-17 22:16:41.418 -07 000000561 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:16:41.578 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2199785120, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 22:16:41.578 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-17 22:16:41.578 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:16:41.578 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 2164362856, 0x0, 391868352) end. Duration was 384 ms.
17-03-17 22:16:41.578 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 22:16:41.578 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:16:41.578 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 22:16:41.578 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 22:16:41.578 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 22:16:41.588 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 22:16:41.788 -07 000000478 INF: FPGA: Recv YMVTILE
17-03-17 22:16:41.788 -07 000000561 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 378 ms overall
17-03-17 22:16:41.828 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:16:41.828 -07 000000429 INF: FPGA: Recv YRDPOS 151568
17-03-17 22:16:41.838 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:41.838 -07 000000561 INF: Y Motor: Encoder = 151568 = motor step 118412.5 = 74.0078 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:16:41.838 -07 000000561 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-17 22:16:41.838 -07 000000561 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.847 mm, average velocity = 2.240 mm/sec
17-03-17 22:16:41.958 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:16:41.958 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 60. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=959, R2=982, Total=1941. Warn if over 250 bubbles per interval.
17-03-17 22:16:42.788 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:16:42.788 -07 000000569 INF: FPGA: Recv YRDPOS 151568
17-03-17 22:16:42.798 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:16:42.798 -07 000000561 INF: Y Motor: Encoder = 151568 = motor step 118412.5 = 74.0078 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:16:42.808 -07 000000561 INF: Y Motor: After move to 74.022606, error = -0.014793, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:16:42.808 -07 000000561 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:16:42.808 -07 000000561 INF: Y Motor: Moved to 74.0078 after 1425 ms (table move)
17-03-17 22:16:42.818 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.167375 mm (DAC = 36563)
17-03-17 22:16:42.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:42.818 -07 000000627 INF: FPGA: Recv ZSGSRD 35348
17-03-17 22:16:42.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:42.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:42.828 -07 000000478 INF: FPGA: Recv ZSGSRD 35345
17-03-17 22:16:42.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:42.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:42.838 -07 000000627 INF: FPGA: Recv ZSGSRD 35350
17-03-17 22:16:42.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:42.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:42.848 -07 000000627 INF: FPGA: Recv ZSGSRD 35351
17-03-17 22:16:42.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:42.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:42.858 -07 000000627 INF: FPGA: Recv ZSGSRD 35346
17-03-17 22:16:42.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:42.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:42.868 -07 000000478 INF: FPGA: Recv ZSGSRD 35334
17-03-17 22:16:42.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:42.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:42.878 -07 000000478 INF: FPGA: Recv ZSGSRD 35349
17-03-17 22:16:42.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:42.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:42.888 -07 000000478 INF: FPGA: Recv ZSGSRD 35345
17-03-17 22:16:42.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:42.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:42.898 -07 000000576 INF: FPGA: Recv ZSGSRD 35341
17-03-17 22:16:42.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:42.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:42.908 -07 000000478 INF: FPGA: Recv ZSGSRD 35348
17-03-17 22:16:42.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:42.918 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:16:42.918 -07 000000576 INF: FPGA: Recv ZPIEZORD 31310
17-03-17 22:16:42.928 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:42.928 -07 000000610 INF: Z Motor: Piezo is near 46.9 V (nominally 0 to 100 V), expect near 55.8 V, since DAC is at 5.579 V. Piezo Error = -8.9 V.
17-03-17 22:16:42.928 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.4 um, Read 10 ADC samples: Avg = 35346 (-166.5 uncal um), Error = 0.8 uncal um, Median = 35347 (-166.5 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 35334 (-166.4 uncal um), Max = 35351 (-166.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 12 (0.1 uncal um)
17-03-17 22:16:42.928 -07 000000610 INF: Z Motor: ADC noise = 12, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35346, posNoise = 5, negNoise = 12
17-03-17 22:16:42.928 -07 000000610 INF: Z Motor: After move to -0.167375, error = -0.000019, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:16:42.928 -07 000000610 INF: Z Motor: Settle wait time = 1427 ms, measure time = 110 ms (allowed 150 ms), total time = 1537 ms
17-03-17 22:16:42.928 -07 000000610 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-17 22:16:42.968 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1579 ms
17-03-17 22:16:42.968 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:16:42.968 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.0078125, Z-position -0.167393554373818. ----------
17-03-17 22:16:42.968 -07 000000610 INF: Cycle	61	Tile	18	Exposure Settings		A	448	G	215	T	215	C	448
17-03-17 22:16:42.968 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36387, sync = True, waitForSettling = True)
17-03-17 22:16:42.968 -07 000000610 INF: Z Motor: Moving to -0.166569 mm, started at -0.167394 mm, distance = 0.82 um
17-03-17 22:16:42.968 -07 000000610 INF: FPGA: Xmit ZDACW 36387\n [Z Motor]
17-03-17 22:16:42.968 -07 000000431 INF: FPGA: Recv ZDACW
17-03-17 22:16:42.978 -07 000000610 INF: FPGA: 'ZDACW 36387' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 22:16:42.978 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:16:42.978 -07 000000431 INF: FPGA: Recv ZDACR 36387
17-03-17 22:16:42.988 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:42.988 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:16:43.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:43.138 -07 000000569 INF: FPGA: Recv ZSGSRD 35221
17-03-17 22:16:43.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:16:43.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:43.148 -07 000000569 INF: FPGA: Recv ZSGSRD 35220
17-03-17 22:16:43.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:43.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:43.158 -07 000000569 INF: FPGA: Recv ZSGSRD 35219
17-03-17 22:16:43.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:43.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:43.168 -07 000000429 INF: FPGA: Recv ZSGSRD 35219
17-03-17 22:16:43.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:43.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:43.178 -07 000000618 INF: FPGA: Recv ZSGSRD 35224
17-03-17 22:16:43.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:43.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:43.188 -07 000000486 INF: FPGA: Recv ZSGSRD 35217
17-03-17 22:16:43.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:43.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:43.198 -07 000000618 INF: FPGA: Recv ZSGSRD 35218
17-03-17 22:16:43.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:43.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:43.208 -07 000000618 INF: FPGA: Recv ZSGSRD 35226
17-03-17 22:16:43.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:43.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:43.218 -07 000000478 INF: FPGA: Recv ZSGSRD 35219
17-03-17 22:16:43.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:43.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:43.228 -07 000000618 INF: FPGA: Recv ZSGSRD 35220
17-03-17 22:16:43.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:43.238 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:16:43.238 -07 000000618 INF: FPGA: Recv ZPIEZORD 31119
17-03-17 22:16:43.248 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 1 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:16:43.248 -07 000000610 INF: Z Motor: Piezo is near 46.5 V (nominally 0 to 100 V), expect near 55.5 V, since DAC is at 5.552 V. Piezo Error = -9.0 V.
17-03-17 22:16:43.248 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.6 um, Read 10 ADC samples: Avg = 35220 (-165.7 uncal um), Error = 0.9 uncal um, Median = 35220 (-165.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35217 (-165.7 uncal um), Max = 35226 (-165.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 22:16:43.248 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35220, posNoise = 6, negNoise = 3
17-03-17 22:16:43.248 -07 000000610 INF: Z Motor: After move to -0.166569, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:16:43.248 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-17 22:16:43.248 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:16:43.248 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:16:43.248 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:16:43.248 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:16:43.248 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:16:43.248 -07 000000429 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:16:43.248 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:16:43.248 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:16:43.248 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:16:43.248 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:16:43.248 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:16:43.248 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:16:43.258 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:16:43.258 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:16:43.258 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:16:43.258 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:16:43.268 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-17 22:16:43.268 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 22:16:43.268 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 22:16:43.268 -07 000000429 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 22:16:43.268 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 448 448 215 215 36563 150\n [Camera]
17-03-17 22:16:43.468 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:16:43.918 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 640
17-03-17 22:16:43.918 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 640
17-03-17 22:16:43.918 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:16:43.918 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:16:43.918 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 2235207384, 0x0, 391868352) start.
17-03-17 22:16:43.918 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 640
17-03-17 22:16:43.918 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 640
17-03-17 22:16:43.928 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:16:43.928 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:16:43.928 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-17 22:16:44.108 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36563 833
17-03-17 22:16:44.258 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning grn on 983
17-03-17 22:16:44.308 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 380 ms.
17-03-17 22:16:44.308 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-17 22:16:44.308 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:16:44.308 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 2235207384, 0x0, 391868352) end. Duration was 386 ms.
17-03-17 22:16:44.308 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 22:16:44.308 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:16:44.308 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:16:44.308 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:16:44.308 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 22:16:44.318 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 22:16:44.478 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1199
17-03-17 22:16:44.478 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1199
17-03-17 22:16:44.478 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:16:44.478 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:16:44.478 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start.
17-03-17 22:16:44.478 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1199
17-03-17 22:16:44.478 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1199
17-03-17 22:16:44.478 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:16:44.478 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:16:44.478 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) start.
17-03-17 22:16:44.668 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP 1391
17-03-17 22:16:44.668 -07 000000478 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:16:44.668 -07 000000610 INF: FPGA: 'CAMDBLSNAP 448 448 215 215 36563 150' command took 2 ms to send, 1386 ms to get response, and 1397 ms overall
17-03-17 22:16:44.668 -07 000000610 INF: Skipping AutoFocus in Tile 19: adopting Best-Z from the cache: -0.166978
17-03-17 22:16:44.678 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.16698 mm
17-03-17 22:16:44.678 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:16:44.678 -07 000000478 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-17 22:16:44.678 -07 000000478 INF: Y Motor: Moving to 74.8526 mm, started at 74.0078 mm, delta = 0.8448 mm
17-03-17 22:16:44.678 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:16:44.858 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 22:16:44.858 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 22:16:44.858 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:16:44.858 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 22:16:44.858 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 22:16:44.858 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:16:44.868 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 22:16:44.868 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 22:16:44.868 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 22:16:44.878 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 22:16:44.878 -07 000000462 INF: Z Motor: Entering MoveAbsStepped (DAC = 36476, sync = True, waitForSettling = False)
17-03-17 22:16:44.878 -07 000000462 INF: Z Motor: Moving to -0.166976 mm, started at -0.166584 mm, distance = -0.39 um
17-03-17 22:16:44.878 -07 000000462 INF: FPGA: Xmit ZDACW 36476\n [Z Motor]
17-03-17 22:16:44.888 -07 000000431 INF: FPGA: Recv YRDPOS 151568
17-03-17 22:16:44.888 -07 000000431 INF: FPGA: Recv ZDACW
17-03-17 22:16:44.888 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 200 ms to get response, and 207 ms overall
17-03-17 22:16:44.888 -07 000000462 INF: FPGA: 'ZDACW 36476' command took 0 ms to send, 1 ms to get response, and 5 ms overall
17-03-17 22:16:44.888 -07 000000462 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:16:44.888 -07 000000478 INF: Y Motor: Encoder = 151568 = motor step 118412.5 = 74.0078 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:16:44.888 -07 000000478 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:16:44.888 -07 000000478 INF: Y Motor: Moving 1352 steps-30
17-03-17 22:16:44.888 -07 000000431 INF: FPGA: Recv ZDACR 36476
17-03-17 22:16:44.898 -07 000000462 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:16:44.898 -07 000000462 INF: Z Motor: MoveAbsStepped took 15 ms (did NOT wait for settling yet))
17-03-17 22:16:44.898 -07 000000478 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:16:45.268 -07 000000462 INF: FPGA: Recv YMVTILE
17-03-17 22:16:45.268 -07 000000478 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 386 ms overall
17-03-17 22:16:45.298 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:16:45.298 -07 000000431 INF: FPGA: Recv YRDPOS 153255
17-03-17 22:16:45.308 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 22:16:45.308 -07 000000478 INF: Y Motor: Encoder = 153255 = motor step 119730.5 = 74.8315 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:16:45.308 -07 000000478 INF: Y Motor: Position error before settling (table move) = -43 encoder counts (-0.021 mm)
17-03-17 22:16:45.308 -07 000000478 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 386 ms, distance = 0.845 mm, average velocity = 2.189 mm/sec
17-03-17 22:16:45.368 -07 000000431 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 61, FrontChillerTemperature: 4.003063,
17-03-17 22:16:46.258 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:16:46.258 -07 000000551 INF: FPGA: Recv YRDPOS 153255
17-03-17 22:16:46.268 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:46.268 -07 000000478 INF: Y Motor: Encoder = 153255 = motor step 119730.5 = 74.8315 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:16:46.278 -07 000000478 INF: Y Motor: After move to 74.852608, error = -0.021065, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:16:46.278 -07 000000478 INF: Y Motor: Position error after settling (table move) = -43 encoder counts (-0.021 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:16:46.278 -07 000000478 INF: Y Motor: Moved to 74.8315 after 1605 ms (table move)
17-03-17 22:16:46.288 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.166976 mm (DAC = 36476)
17-03-17 22:16:46.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:46.288 -07 000000623 INF: FPGA: Recv ZSGSRD 35288
17-03-17 22:16:46.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:46.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:46.298 -07 000000431 INF: FPGA: Recv ZSGSRD 35275
17-03-17 22:16:46.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:46.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:46.308 -07 000000012 INF: FPGA: Recv ZSGSRD 35277
17-03-17 22:16:46.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:46.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:46.318 -07 000000462 INF: FPGA: Recv ZSGSRD 35282
17-03-17 22:16:46.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:46.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:46.328 -07 000000448 INF: FPGA: Recv ZSGSRD 35288
17-03-17 22:16:46.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:46.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:46.338 -07 000000478 INF: FPGA: Recv ZSGSRD 35287
17-03-17 22:16:46.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:46.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:46.348 -07 000000462 INF: FPGA: Recv ZSGSRD 35277
17-03-17 22:16:46.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:46.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:46.358 -07 000000478 INF: FPGA: Recv ZSGSRD 35284
17-03-17 22:16:46.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:46.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:46.368 -07 000000448 INF: FPGA: Recv ZSGSRD 35282
17-03-17 22:16:46.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:46.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:46.378 -07 000000431 INF: FPGA: Recv ZSGSRD 35275
17-03-17 22:16:46.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:46.388 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:16:46.388 -07 000000448 INF: FPGA: Recv ZPIEZORD 31226
17-03-17 22:16:46.398 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:46.398 -07 000000610 INF: Z Motor: Piezo is near 46.7 V (nominally 0 to 100 V), expect near 55.7 V, since DAC is at 5.566 V. Piezo Error = -9.0 V.
17-03-17 22:16:46.398 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.0 um, Read 10 ADC samples: Avg = 35282 (-166.1 uncal um), Error = 0.9 uncal um, Median = 35282 (-166.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35275 (-166.1 uncal um), Max = 35288 (-166.2 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 22:16:46.398 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35282, posNoise = 6, negNoise = 7
17-03-17 22:16:46.398 -07 000000610 INF: Z Motor: After move to -0.166976, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:16:46.398 -07 000000610 INF: Z Motor: Settle wait time = 1405 ms, measure time = 110 ms (allowed 150 ms), total time = 1515 ms
17-03-17 22:16:46.398 -07 000000610 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-17 22:16:46.438 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1759 ms
17-03-17 22:16:46.438 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:16:46.438 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83154296875, Z-position -0.166982404796745. ----------
17-03-17 22:16:46.438 -07 000000610 INF: Cycle	61	Tile	19	Exposure Settings		A	448	G	215	T	215	C	448
17-03-17 22:16:46.438 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36300, sync = True, waitForSettling = True)
17-03-17 22:16:46.438 -07 000000610 INF: Z Motor: Moving to -0.166171 mm, started at -0.166982 mm, distance = 0.81 um
17-03-17 22:16:46.438 -07 000000610 INF: FPGA: Xmit ZDACW 36300\n [Z Motor]
17-03-17 22:16:46.438 -07 000000623 INF: FPGA: Recv ZDACW
17-03-17 22:16:46.448 -07 000000610 INF: FPGA: 'ZDACW 36300' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:16:46.448 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:16:46.448 -07 000000431 INF: FPGA: Recv ZDACR 36300
17-03-17 22:16:46.458 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:46.458 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:16:46.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:46.608 -07 000000551 INF: FPGA: Recv ZSGSRD 35157
17-03-17 22:16:46.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:16:46.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:46.618 -07 000000448 INF: FPGA: Recv ZSGSRD 35161
17-03-17 22:16:46.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:46.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:46.628 -07 000000462 INF: FPGA: Recv ZSGSRD 35152
17-03-17 22:16:46.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:46.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:46.638 -07 000000448 INF: FPGA: Recv ZSGSRD 35162
17-03-17 22:16:46.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:46.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:46.648 -07 000000478 INF: FPGA: Recv ZSGSRD 35164
17-03-17 22:16:46.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:46.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:46.658 -07 000000431 INF: FPGA: Recv ZSGSRD 35155
17-03-17 22:16:46.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:46.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:46.668 -07 000000551 INF: FPGA: Recv ZSGSRD 35160
17-03-17 22:16:46.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:46.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:46.678 -07 000000448 INF: FPGA: Recv ZSGSRD 35154
17-03-17 22:16:46.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:46.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:46.688 -07 000000623 INF: FPGA: Recv ZSGSRD 35155
17-03-17 22:16:46.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:46.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:46.698 -07 000000478 INF: FPGA: Recv ZSGSRD 35157
17-03-17 22:16:46.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:46.708 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:16:46.708 -07 000000448 INF: FPGA: Recv ZPIEZORD 31051
17-03-17 22:16:46.718 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:46.718 -07 000000610 INF: Z Motor: Piezo is near 46.3 V (nominally 0 to 100 V), expect near 55.4 V, since DAC is at 5.539 V. Piezo Error = -9.1 V.
17-03-17 22:16:46.718 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.2 um, Read 10 ADC samples: Avg = 35158 (-165.3 uncal um), Error = 0.9 uncal um, Median = 35157 (-165.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35152 (-165.3 uncal um), Max = 35164 (-165.4 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 22:16:46.718 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35158, posNoise = 6, negNoise = 6
17-03-17 22:16:46.718 -07 000000610 INF: Z Motor: After move to -0.166171, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:16:46.718 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-17 22:16:46.718 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:16:46.718 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:16:46.718 -07 000000551 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:16:46.718 -07 000000623 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:16:46.718 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:16:46.718 -07 000000431 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:16:46.718 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 22:16:46.718 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:16:46.718 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:16:46.718 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:16:46.728 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:16:46.728 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:16:46.728 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:16:46.728 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:16:46.728 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:16:46.728 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:16:46.738 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 22:16:46.738 -07 000000623 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 22:16:46.738 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 22:16:46.738 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 22:16:46.748 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 448 448 215 215 36476 150\n [Camera]
17-03-17 22:16:46.948 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:16:46.958 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:16:46.958 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 60. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=959, R2=982, Total=1941. Warn if over 250 bubbles per interval.
17-03-17 22:16:47.398 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 640
17-03-17 22:16:47.398 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 640
17-03-17 22:16:47.398 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:16:47.398 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:16:47.398 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-17 22:16:47.398 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 640
17-03-17 22:16:47.398 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 640
17-03-17 22:16:47.398 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:16:47.398 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:16:47.398 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-17 22:16:47.588 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36476 833
17-03-17 22:16:47.738 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning grn on 983
17-03-17 22:16:47.778 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 22:16:47.778 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 22:16:47.778 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 22:16:47.778 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:16:47.778 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 22:16:47.778 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:16:47.778 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 22:16:47.778 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 22:16:47.778 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 22:16:47.788 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 22:16:47.958 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1200
17-03-17 22:16:47.958 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1200
17-03-17 22:16:47.958 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:16:47.958 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:16:47.958 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) start.
17-03-17 22:16:47.958 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1200
17-03-17 22:16:47.958 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1200
17-03-17 22:16:47.958 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:16:47.958 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:16:47.958 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-17 22:16:48.148 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP 1390
17-03-17 22:16:48.148 -07 000000431 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:16:48.148 -07 000000610 INF: FPGA: 'CAMDBLSNAP 448 448 215 215 36476 150' command took 2 ms to send, 1392 ms to get response, and 1400 ms overall
17-03-17 22:16:48.338 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 22:16:48.338 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 22:16:48.338 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:16:48.338 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 380 ms.
17-03-17 22:16:48.338 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-17 22:16:48.338 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:16:48.348 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:16:48.348 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 22:16:48.348 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-17 22:16:48.348 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:16:48.348 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 22:16:48.388 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 42 ms.
17-03-17 22:16:48.388 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-17 22:16:48.428 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 41 ms.
17-03-17 22:16:48.428 -07 000000610 INF: Move compensator for Bottom-surface imaging.
17-03-17 22:16:48.428 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-17 22:16:48.428 -07 000000561 INF: FPGA: Recv EMCUR 
17-03-17 22:16:48.438 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 22:16:48.438 -07 000000610 INF: FPGA: Xmit EMIN 20 40\n [Compensator]
17-03-17 22:16:48.938 -07 000000561 INF: FPGA: Recv EMIN
17-03-17 22:16:48.938 -07 000000610 INF: FPGA: 'EMIN 20 40' command took 0 ms to send, 493 ms to get response, and 502 ms overall
17-03-17 22:16:48.938 -07 000000610 INF: FPGA: Xmit EMCUR 60\n [Compensator]
17-03-17 22:16:48.938 -07 000000561 INF: FPGA: Recv EMCUR 
17-03-17 22:16:48.948 -07 000000610 INF: FPGA: 'EMCUR 60' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:16:48.948 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 22:16:48.948 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 74.83154296875, Z-Position -0.166185802491167. ------
17-03-17 22:16:48.948 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:16:48.948 -07 000000561 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.14030 mm
17-03-17 22:16:48.948 -07 000000561 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:16:49.958 -07 000000627 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-17 22:16:49.958 -07 000000627 INF: Y Motor: Moving to 59.9126 mm, started at 74.8315 mm, delta = -14.9189 mm
17-03-17 22:16:49.958 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:16:50.488 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:16:50.488 -07 000000569 INF: FPGA: Recv YRDPOS 153257
17-03-17 22:16:50.488 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1530 ms to get response, and 1533 ms overall
17-03-17 22:16:50.488 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 520 ms to get response, and 528 ms overall
17-03-17 22:16:50.488 -07 000000627 INF: Y Motor: Encoder = 153257 = motor step 119732.0 = 74.8325 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:16:50.488 -07 000000576 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:16:50.488 -07 000000569 INF: Z Motor: Entering MoveAbsStepped (DAC = 30648, sync = True, waitForSettling = False)
17-03-17 22:16:50.488 -07 000000569 INF: Z Motor: Moving to -0.140298 mm, started at -0.166186 mm, distance = 25.89 um
17-03-17 22:16:50.488 -07 000000627 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = -14.9400 mm (-23904.0 steps). UsingTableMove = False
17-03-17 22:16:50.488 -07 000000627 INF: Y Motor: Moving to 122701 encoder counts
17-03-17 22:16:50.498 -07 000000569 INF: FPGA: Xmit ZDACW 30648\n [Z Motor]
17-03-17 22:16:50.508 -07 000000627 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-17 22:16:51.018 -07 000000618 INF: FPGA: Recv ZDACW
17-03-17 22:16:51.018 -07 000000618 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:16:51.018 -07 000000569 INF: FPGA: 'ZDACW 30648' command took 0 ms to send, 510 ms to get response, and 525 ms overall
17-03-17 22:16:51.018 -07 000000569 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:16:51.018 -07 000000576 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 520 ms to get response, and 529 ms overall
17-03-17 22:16:51.018 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 61, FrontChillerTemperature: 3.979922,
17-03-17 22:16:51.018 -07 000000618 INF: FPGA: Recv ZDACR 30648
17-03-17 22:16:51.028 -07 000000569 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:16:51.028 -07 000000569 INF: Z Motor: MoveAbsStepped took 537 ms (did NOT wait for settling yet))
17-03-17 22:16:51.958 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:16:51.958 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 60. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=959, R2=982, Total=1941. Warn if over 250 bubbles per interval.
17-03-17 22:16:52.128 -07 000000576 INF: FPGA: Recv YMVTO 122703 23903
17-03-17 22:16:52.128 -07 000000627 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1618 ms to get response, and 1640 ms overall
17-03-17 22:16:52.128 -07 000000627 INF: Y Motor: Position error before settling = 2 encoder counts (0.001 mm)
17-03-17 22:16:52.128 -07 000000627 INF: Y Motor: To move from 74.833 to 59.913 (-14.919 mm) should take 23872 steps, but required 23903 steps (14.939 mm). Slippage = 0.019 mm (0.00%).
17-03-17 22:16:52.128 -07 000000627 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1640 ms, distance = 14.919 mm, average velocity = 9.097 mm/sec
17-03-17 22:16:54.978 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:16:54.978 -07 000000576 INF: FPGA: Recv YRDPOS 122698
17-03-17 22:16:54.988 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:54.988 -07 000000627 INF: Y Motor: Encoder = 122698 = motor step 95857.8 = 59.9111 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:16:55.018 -07 000000627 INF: Y Motor: After move to 59.912609, error = -0.001476, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:16:55.018 -07 000000627 INF: Y Motor: Position error after settling = -3 encoder counts (-0.001 mm), Delta during settling = -5 counts (-0.002 mm)
17-03-17 22:16:55.018 -07 000000627 INF: Y Motor: Moved to 59.9111 after 5061 ms
17-03-17 22:16:55.018 -07 000000561 INF: Z Motor: EndOfMoveAbsStepped: target = -0.140298 mm (DAC = 30648)
17-03-17 22:16:55.018 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:55.018 -07 000000569 INF: FPGA: Recv ZSGSRD 31134
17-03-17 22:16:55.028 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 22:16:55.028 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:55.028 -07 000000486 INF: FPGA: Recv ZSGSRD 31128
17-03-17 22:16:55.038 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:55.038 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:55.038 -07 000000576 INF: FPGA: Recv ZSGSRD 31130
17-03-17 22:16:55.048 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:55.048 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:55.048 -07 000000627 INF: FPGA: Recv ZSGSRD 31128
17-03-17 22:16:55.058 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:55.058 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:55.058 -07 000000569 INF: FPGA: Recv ZSGSRD 31129
17-03-17 22:16:55.068 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:55.068 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:55.068 -07 000000462 INF: FPGA: Recv ZSGSRD 31136
17-03-17 22:16:55.078 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:55.078 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:55.078 -07 000000429 INF: FPGA: Recv ZSGSRD 31126
17-03-17 22:16:55.088 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:55.088 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:55.088 -07 000000623 INF: FPGA: Recv ZSGSRD 31131
17-03-17 22:16:55.098 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:55.098 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:55.098 -07 000000627 INF: FPGA: Recv ZSGSRD 31132
17-03-17 22:16:55.108 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:55.108 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:55.108 -07 000000576 INF: FPGA: Recv ZSGSRD 31134
17-03-17 22:16:55.118 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:55.118 -07 000000561 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:16:55.118 -07 000000486 INF: FPGA: Recv ZPIEZORD 26853
17-03-17 22:16:55.128 -07 000000561 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:55.128 -07 000000561 INF: Z Motor: Piezo is near 37.4 V (nominally 0 to 100 V), expect near 46.8 V, since DAC is at 4.677 V. Piezo Error = -9.4 V.
17-03-17 22:16:55.128 -07 000000561 INF: Z Motor: ReadAdcAverage: Commanded Z = -140.3 um, Read 10 ADC samples: Avg = 31131 (-139.5 uncal um), Error = 0.8 uncal um, Median = 31130 (-139.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 31126 (-139.5 uncal um), Max = 31136 (-139.5 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 22:16:55.128 -07 000000561 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31131, posNoise = 5, negNoise = 5
17-03-17 22:16:55.128 -07 000000561 INF: Z Motor: After move to -0.140298, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:16:55.128 -07 000000561 INF: Z Motor: Settle wait time = 4531 ms, measure time = 106 ms (allowed 150 ms), total time = 4637 ms
17-03-17 22:16:55.128 -07 000000561 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 22:16:55.178 -07 000000561 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 6222 ms
17-03-17 22:16:55.178 -07 000000561 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:16:55.178 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:16:55.178 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:16:55.178 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:16:55.178 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:16:55.178 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:16:55.178 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:16:55.178 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:16:55.178 -07 000000569 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-17 22:16:55.198 -07 000000569 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 20 ms.
17-03-17 22:16:55.198 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:16:55.208 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:16:55.208 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:16:55.208 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 22:16:55.208 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 31 ms.
17-03-17 22:16:55.218 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:16:55.258 -07 000000012 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:16:55.458 -07 000000429 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:16:55.458 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:16:55.458 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:16:55.468 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591997688, 0x0, 559484976) start.
17-03-17 22:16:55.498 -07 000000486 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:16:55.498 -07 000000627 INF: FPGA: Recv CAMSNAP
17-03-17 22:16:55.498 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 284 ms overall
17-03-17 22:16:55.578 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591997688, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 22:16:55.578 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:16:55.578 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:16:55.578 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 22:16:55.598 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:16:55.598 -07 000000429 INF: Image SNR check: start
17-03-17 22:16:55.598 -07 000000627 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:16:55.608 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:16:55.608 -07 000000576 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:16:55.608 -07 000000429 INF: Image SNR check: pass  [peak (Max-Min)=55.29]
17-03-17 22:16:55.608 -07 000000429 INF: Autofocus start
17-03-17 22:16:55.608 -07 000000429 INF: MeasureProfile start
17-03-17 22:16:55.628 -07 000000429 INF: MeasureProfile done
17-03-17 22:16:55.628 -07 000000429 INF: X=10  Z correction [um]=0.02415557
17-03-17 22:16:55.628 -07 000000429 INF: Autofocus finished
17-03-17 22:16:55.808 -07 000000486 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:16:55.808 -07 000000576 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:16:55.808 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.9111328125, Z-position -0.140315500196295. ----------
17-03-17 22:16:55.808 -07 000000610 INF: Cycle	61	Tile	1	Exposure Settings		A	448	G	215	T	215	C	448
17-03-17 22:16:55.818 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 29165, sync = True, waitForSettling = True)
17-03-17 22:16:55.818 -07 000000610 INF: Z Motor: Moving to -0.133509 mm, started at -0.140316 mm, distance = 6.81 um
17-03-17 22:16:55.818 -07 000000610 INF: FPGA: Xmit ZDACW 29165\n [Z Motor]
17-03-17 22:16:55.818 -07 000000486 INF: FPGA: Recv ZDACW
17-03-17 22:16:55.828 -07 000000610 INF: FPGA: 'ZDACW 29165' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:55.828 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:16:55.828 -07 000000623 INF: FPGA: Recv ZDACR 29165
17-03-17 22:16:55.838 -07 000000610 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:55.838 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:16:55.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:55.988 -07 000000012 INF: FPGA: Recv ZSGSRD 30076
17-03-17 22:16:55.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:16:55.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:55.998 -07 000000561 INF: FPGA: Recv ZSGSRD 30069
17-03-17 22:16:56.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:56.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:56.008 -07 000000576 INF: FPGA: Recv ZSGSRD 30065
17-03-17 22:16:56.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:56.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:56.018 -07 000000561 INF: FPGA: Recv ZSGSRD 30073
17-03-17 22:16:56.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:56.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:56.028 -07 000000462 INF: FPGA: Recv ZSGSRD 30073
17-03-17 22:16:56.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:56.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:56.038 -07 000000429 INF: FPGA: Recv ZSGSRD 30071
17-03-17 22:16:56.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:56.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:56.048 -07 000000486 INF: FPGA: Recv ZSGSRD 30068
17-03-17 22:16:56.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:56.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:56.058 -07 000000429 INF: FPGA: Recv ZSGSRD 30080
17-03-17 22:16:56.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:56.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:56.078 -07 000000429 INF: FPGA: Recv ZSGSRD 30064
17-03-17 22:16:56.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:16:56.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:16:56.088 -07 000000486 INF: FPGA: Recv ZSGSRD 30071
17-03-17 22:16:56.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:56.098 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:16:56.098 -07 000000576 INF: FPGA: Recv ZPIEZORD 25687
17-03-17 22:16:56.108 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:16:56.108 -07 000000610 INF: Z Motor: Piezo is near 34.9 V (nominally 0 to 100 V), expect near 44.5 V, since DAC is at 4.450 V. Piezo Error = -9.6 V.
17-03-17 22:16:56.108 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.5 um, Read 10 ADC samples: Avg = 30071 (-132.7 uncal um), Error = 0.8 uncal um, Median = 30071 (-132.7 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 30064 (-132.7 uncal um), Max = 30080 (-132.8 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 22:16:56.108 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30071, posNoise = 9, negNoise = 7
17-03-17 22:16:56.108 -07 000000610 INF: Z Motor: After move to -0.133509, error = 0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:16:56.108 -07 000000610 INF: Z Motor: MoveAbsStepped took 290 ms)
17-03-17 22:16:56.108 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:16:56.108 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:16:56.108 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:16:56.108 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:16:56.108 -07 000000627 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:16:56.108 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:16:56.108 -07 000000429 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:16:56.108 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:16:56.108 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:16:56.108 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:16:56.108 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-17 22:16:56.108 -07 000000429 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-17 22:16:56.118 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 22:16:56.118 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:16:56.128 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 22:16:56.128 -07 000000627 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 23 ms.
17-03-17 22:16:56.138 -07 000000429 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 23 ms.
17-03-17 22:16:56.138 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:16:56.138 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 22:16:56.138 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:16:56.148 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 22:16:56.148 -07 000000429 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 40 ms.
17-03-17 22:16:56.148 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 448 448 215 215 29342 150\n [Camera]
17-03-17 22:16:56.348 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:16:56.388 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 61, FrontChillerTemperature: 3.985358,
17-03-17 22:16:56.798 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 640
17-03-17 22:16:56.798 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 640
17-03-17 22:16:56.798 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:16:56.798 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:16:56.798 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) start.
17-03-17 22:16:56.798 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 640
17-03-17 22:16:56.798 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 640
17-03-17 22:16:56.798 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:16:56.798 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:16:56.798 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) start.
17-03-17 22:16:57.198 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) end. Duration was 400 ms.
17-03-17 22:16:57.198 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 22:16:57.198 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:16:57.208 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) end. Duration was 401 ms.
17-03-17 22:16:57.208 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 22:16:57.208 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:16:57.208 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:16:57.208 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-17 22:16:57.208 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:16:57.218 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-17 22:16:57.218 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:16:57.218 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29342 833
17-03-17 22:16:57.218 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning grn on 983
17-03-17 22:16:57.218 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 60. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=959, R2=982, Total=1941. Warn if over 250 bubbles per interval.
17-03-17 22:16:57.358 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1199
17-03-17 22:16:57.358 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1199
17-03-17 22:16:57.358 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:16:57.488 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1199
17-03-17 22:16:57.488 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1199
17-03-17 22:16:57.498 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:16:57.498 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:16:57.498 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 22:16:57.498 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:16:57.498 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-17 22:16:57.878 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 386 ms.
17-03-17 22:16:57.878 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 22:16:57.878 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:16:57.888 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 389 ms.
17-03-17 22:16:57.888 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:16:57.888 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 22:16:57.888 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:16:57.888 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:16:57.888 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 529 ms.
17-03-17 22:16:57.888 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 22:16:57.898 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP 1391
17-03-17 22:16:57.898 -07 000000561 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:16:57.898 -07 000000610 INF: FPGA: 'CAMDBLSNAP 448 448 215 215 29342 150' command took 2 ms to send, 1738 ms to get response, and 1750 ms overall
17-03-17 22:16:57.898 -07 000000610 INF: Skipping AutoFocus in Tile 2: adopting Best-Z from the cache: -0.133938
17-03-17 22:16:57.908 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.13394 mm
17-03-17 22:16:57.908 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:16:57.908 -07 000000623 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-17 22:16:57.908 -07 000000623 INF: Y Motor: Moving to 60.7426 mm, started at 59.9111 mm, delta = 0.8315 mm
17-03-17 22:16:57.908 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:16:57.908 -07 000000561 INF: Z Motor: Entering MoveAbsStepped (DAC = 29259, sync = True, waitForSettling = False)
17-03-17 22:16:57.908 -07 000000561 INF: Z Motor: Moving to -0.133939 mm, started at -0.133506 mm, distance = -0.43 um
17-03-17 22:16:57.918 -07 000000561 INF: FPGA: Xmit ZDACW 29259\n [Z Motor]
17-03-17 22:16:58.678 -07 000000448 INF: FPGA: Recv YRDPOS 122698
17-03-17 22:16:58.678 -07 000000448 INF: FPGA: Recv ZDACW
17-03-17 22:16:58.678 -07 000000561 INF: FPGA: 'ZDACW 29259' command took 0 ms to send, 750 ms to get response, and 766 ms overall
17-03-17 22:16:58.678 -07 000000561 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:16:58.678 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 760 ms to get response, and 767 ms overall
17-03-17 22:16:58.678 -07 000000623 INF: Y Motor: Encoder = 122698 = motor step 95857.8 = 59.9111 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:16:58.678 -07 000000623 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:16:58.678 -07 000000623 INF: Y Motor: Moving 1330 steps2
17-03-17 22:16:58.678 -07 000000448 INF: FPGA: Recv ZDACR 29259
17-03-17 22:16:58.688 -07 000000561 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:16:58.688 -07 000000561 INF: Z Motor: MoveAbsStepped took 776 ms (did NOT wait for settling yet))
17-03-17 22:16:58.688 -07 000000623 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:16:59.058 -07 000000618 INF: FPGA: Recv YMVTILE
17-03-17 22:16:59.058 -07 000000623 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 386 ms overall
17-03-17 22:16:59.098 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:16:59.098 -07 000000618 INF: FPGA: Recv YRDPOS 124381
17-03-17 22:16:59.108 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:16:59.108 -07 000000623 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:16:59.108 -07 000000623 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-17 22:16:59.108 -07 000000623 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 386 ms, distance = 0.831 mm, average velocity = 2.154 mm/sec
17-03-17 22:17:00.058 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:17:00.058 -07 000000448 INF: FPGA: Recv YRDPOS 124382
17-03-17 22:17:00.068 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:17:00.068 -07 000000623 INF: Y Motor: Encoder = 124382 = motor step 97173.4 = 60.7334 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:17:00.088 -07 000000623 INF: Y Motor: After move to 60.742607, error = -0.009209, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:17:00.088 -07 000000623 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 22:17:00.088 -07 000000623 INF: Y Motor: Moved to 60.7334 after 2182 ms (table move)
17-03-17 22:17:00.088 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.133939 mm (DAC = 29259)
17-03-17 22:17:00.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:00.098 -07 000000431 INF: FPGA: Recv ZSGSRD 30139
17-03-17 22:17:00.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 22:17:00.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:00.098 -07 000000623 INF: FPGA: Recv ZSGSRD 30137
17-03-17 22:17:00.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:00.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:00.108 -07 000000478 INF: FPGA: Recv ZSGSRD 30139
17-03-17 22:17:00.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:00.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:00.118 -07 000000551 INF: FPGA: Recv ZSGSRD 30147
17-03-17 22:17:00.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:00.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:00.128 -07 000000561 INF: FPGA: Recv ZSGSRD 30140
17-03-17 22:17:00.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:00.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:00.138 -07 000000551 INF: FPGA: Recv ZSGSRD 30141
17-03-17 22:17:00.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:00.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:00.148 -07 000000576 INF: FPGA: Recv ZSGSRD 30135
17-03-17 22:17:00.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:00.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:00.158 -07 000000448 INF: FPGA: Recv ZSGSRD 30132
17-03-17 22:17:00.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:00.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:00.168 -07 000000561 INF: FPGA: Recv ZSGSRD 30140
17-03-17 22:17:00.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:00.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:00.178 -07 000000551 INF: FPGA: Recv ZSGSRD 30142
17-03-17 22:17:00.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:00.188 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:17:00.188 -07 000000576 INF: FPGA: Recv ZPIEZORD 25841
17-03-17 22:17:00.198 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:00.198 -07 000000610 INF: Z Motor: Piezo is near 35.2 V (nominally 0 to 100 V), expect near 44.6 V, since DAC is at 4.465 V. Piezo Error = -9.4 V.
17-03-17 22:17:00.198 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.9 um, Read 10 ADC samples: Avg = 30139 (-133.2 uncal um), Error = 0.8 uncal um, Median = 30140 (-133.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30132 (-133.1 uncal um), Max = 30147 (-133.2 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 22:17:00.198 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30139, posNoise = 8, negNoise = 7
17-03-17 22:17:00.198 -07 000000610 INF: Z Motor: After move to -0.133939, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:17:00.198 -07 000000610 INF: Z Motor: Settle wait time = 2183 ms, measure time = 103 ms (allowed 150 ms), total time = 2286 ms
17-03-17 22:17:00.198 -07 000000610 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 22:17:00.248 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2339 ms
17-03-17 22:17:00.248 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:17:00.248 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.7333984375, Z-position -0.133942681751668. ----------
17-03-17 22:17:00.248 -07 000000610 INF: Cycle	61	Tile	2	Exposure Settings		A	448	G	215	T	215	C	448
17-03-17 22:17:00.248 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 29082, sync = True, waitForSettling = True)
17-03-17 22:17:00.248 -07 000000610 INF: Z Motor: Moving to -0.133129 mm, started at -0.133943 mm, distance = 0.81 um
17-03-17 22:17:00.248 -07 000000610 INF: FPGA: Xmit ZDACW 29082\n [Z Motor]
17-03-17 22:17:00.258 -07 000000618 INF: FPGA: Recv ZDACW
17-03-17 22:17:00.258 -07 000000610 INF: FPGA: 'ZDACW 29082' command took 0 ms to send, 3 ms to get response, and 6 ms overall
17-03-17 22:17:00.258 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:17:00.258 -07 000000576 INF: FPGA: Recv ZDACR 29082
17-03-17 22:17:00.268 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:17:00.268 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:17:00.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:00.418 -07 000000618 INF: FPGA: Recv ZSGSRD 30018
17-03-17 22:17:00.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:17:00.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:00.428 -07 000000623 INF: FPGA: Recv ZSGSRD 30018
17-03-17 22:17:00.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:00.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:00.438 -07 000000618 INF: FPGA: Recv ZSGSRD 30008
17-03-17 22:17:00.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:00.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:00.448 -07 000000431 INF: FPGA: Recv ZSGSRD 30011
17-03-17 22:17:00.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:00.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:00.458 -07 000000551 INF: FPGA: Recv ZSGSRD 30017
17-03-17 22:17:00.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:00.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:00.468 -07 000000448 INF: FPGA: Recv ZSGSRD 30013
17-03-17 22:17:00.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:00.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:00.478 -07 000000618 INF: FPGA: Recv ZSGSRD 30010
17-03-17 22:17:00.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:00.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:00.488 -07 000000431 INF: FPGA: Recv ZSGSRD 30014
17-03-17 22:17:00.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:00.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:00.498 -07 000000561 INF: FPGA: Recv ZSGSRD 30020
17-03-17 22:17:00.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:00.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:00.508 -07 000000448 INF: FPGA: Recv ZSGSRD 30015
17-03-17 22:17:00.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:00.518 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:17:00.518 -07 000000618 INF: FPGA: Recv ZPIEZORD 25653
17-03-17 22:17:00.528 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:00.528 -07 000000610 INF: Z Motor: Piezo is near 34.8 V (nominally 0 to 100 V), expect near 44.4 V, since DAC is at 4.438 V. Piezo Error = -9.6 V.
17-03-17 22:17:00.528 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.1 um, Read 10 ADC samples: Avg = 30014 (-132.4 uncal um), Error = 0.8 uncal um, Median = 30014 (-132.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30008 (-132.3 uncal um), Max = 30020 (-132.4 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 22:17:00.528 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30014, posNoise = 6, negNoise = 6
17-03-17 22:17:00.528 -07 000000610 INF: Z Motor: After move to -0.133129, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:17:00.528 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-17 22:17:00.528 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:17:00.528 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:17:00.528 -07 000000448 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:17:00.528 -07 000000551 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:17:00.528 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:17:00.528 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:17:00.528 -07 000000429 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:17:00.528 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:17:00.528 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:17:00.528 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:17:00.528 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:17:00.528 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:17:00.538 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:17:00.538 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:17:00.538 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:17:00.538 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:17:00.548 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 22:17:00.548 -07 000000429 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 22:17:00.548 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 22:17:00.548 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 22:17:00.558 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 448 448 215 215 29259 150\n [Camera]
17-03-17 22:17:00.758 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:17:01.198 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 640
17-03-17 22:17:01.198 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 640
17-03-17 22:17:01.198 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:17:01.198 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:17:01.198 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 1406045800, 0x0, 391868352) start.
17-03-17 22:17:01.208 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 640
17-03-17 22:17:01.208 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 640
17-03-17 22:17:01.208 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:17:01.208 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:17:01.208 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) start.
17-03-17 22:17:01.398 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29259 833
17-03-17 22:17:01.548 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP turning grn on 983
17-03-17 22:17:01.598 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 1406045800, 0x0, 391868352) end. Duration was 400 ms.
17-03-17 22:17:01.598 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 22:17:01.598 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:17:01.608 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) end. Duration was 400 ms.
17-03-17 22:17:01.608 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 22:17:01.608 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:17:01.608 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:17:01.608 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 22:17:01.608 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:17:01.618 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-17 22:17:01.748 -07 000000627 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 61, FrontChillerTemperature: 4.011254,
17-03-17 22:17:01.758 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1198
17-03-17 22:17:01.758 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1198
17-03-17 22:17:01.758 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:17:01.758 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:17:01.758 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 1476890328, 0x0, 391868352) start.
17-03-17 22:17:01.768 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1198
17-03-17 22:17:01.768 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1198
17-03-17 22:17:01.768 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:17:01.878 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:17:01.878 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1406045800, 0x0, 418435064) start.
17-03-17 22:17:01.948 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP 1391
17-03-17 22:17:01.948 -07 000000627 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:17:01.948 -07 000000610 INF: FPGA: 'CAMDBLSNAP 448 448 215 215 29259 150' command took 2 ms to send, 1388 ms to get response, and 1397 ms overall
17-03-17 22:17:01.958 -07 000000610 INF: Skipping AutoFocus in Tile 3: adopting Best-Z from the cache: -0.133580
17-03-17 22:17:01.958 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.13358 mm
17-03-17 22:17:01.958 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:17:01.958 -07 000000627 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-17 22:17:01.958 -07 000000627 INF: Y Motor: Moving to 61.5726 mm, started at 60.7334 mm, delta = 0.8392 mm
17-03-17 22:17:01.958 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:17:02.158 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 1476890328, 0x0, 391868352) end. Duration was 395 ms.
17-03-17 22:17:02.158 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 22:17:02.158 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:17:02.158 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:17:02.158 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 22:17:02.168 -07 000000478 INF: Z Motor: Entering MoveAbsStepped (DAC = 29181, sync = True, waitForSettling = False)
17-03-17 22:17:02.168 -07 000000478 INF: Z Motor: Moving to -0.133582 mm, started at -0.133140 mm, distance = -0.44 um
17-03-17 22:17:02.168 -07 000000478 INF: FPGA: Xmit ZDACW 29181\n [Z Motor]
17-03-17 22:17:02.278 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1406045800, 0x0, 418435064) end. Duration was 396 ms.
17-03-17 22:17:02.278 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 22:17:02.278 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:17:02.278 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 22:17:02.288 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 521 ms.
17-03-17 22:17:02.298 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:17:02.298 -07 000000569 INF: FPGA: Recv YRDPOS 124382
17-03-17 22:17:02.298 -07 000000569 INF: FPGA: Recv ZDACW
17-03-17 22:17:02.298 -07 000000478 INF: FPGA: 'ZDACW 29181' command took 0 ms to send, 122 ms to get response, and 123 ms overall
17-03-17 22:17:02.298 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 332 ms to get response, and 338 ms overall
17-03-17 22:17:02.298 -07 000000627 INF: Y Motor: Encoder = 124382 = motor step 97173.4 = 60.7334 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:17:02.298 -07 000000627 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:17:02.298 -07 000000627 INF: Y Motor: Moving 1343 steps-20
17-03-17 22:17:02.298 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 60. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=959, R2=982, Total=1941. Warn if over 250 bubbles per interval.
17-03-17 22:17:02.318 -07 000000478 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:17:02.318 -07 000000569 INF: FPGA: Recv ZDACR 29181
17-03-17 22:17:02.328 -07 000000627 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:17:02.328 -07 000000478 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-17 22:17:02.328 -07 000000478 INF: Z Motor: MoveAbsStepped took 151 ms (did NOT wait for settling yet))
17-03-17 22:17:02.698 -07 000000478 INF: FPGA: Recv YMVTILE
17-03-17 22:17:02.698 -07 000000627 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 367 ms to get response, and 402 ms overall
17-03-17 22:17:02.738 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:17:02.738 -07 000000478 INF: FPGA: Recv YRDPOS 126083
17-03-17 22:17:02.748 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:17:02.748 -07 000000627 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:17:02.748 -07 000000627 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-17 22:17:02.748 -07 000000627 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 404 ms, distance = 0.839 mm, average velocity = 2.077 mm/sec
17-03-17 22:17:03.698 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:17:03.698 -07 000000478 INF: FPGA: Recv YRDPOS 126083
17-03-17 22:17:03.708 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:03.708 -07 000000627 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:17:03.728 -07 000000627 INF: Y Motor: After move to 61.572609, error = -0.008644, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:17:03.728 -07 000000627 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:17:03.728 -07 000000627 INF: Y Motor: Moved to 61.5640 after 1771 ms (table move)
17-03-17 22:17:03.728 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.133582 mm (DAC = 29181)
17-03-17 22:17:03.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:03.738 -07 000000569 INF: FPGA: Recv ZSGSRD 30089
17-03-17 22:17:03.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 22:17:03.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:03.738 -07 000000627 INF: FPGA: Recv ZSGSRD 30079
17-03-17 22:17:03.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:03.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:03.748 -07 000000569 INF: FPGA: Recv ZSGSRD 30079
17-03-17 22:17:03.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:03.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:03.758 -07 000000478 INF: FPGA: Recv ZSGSRD 30082
17-03-17 22:17:03.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:03.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:03.768 -07 000000627 INF: FPGA: Recv ZSGSRD 30095
17-03-17 22:17:03.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:03.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:03.778 -07 000000486 INF: FPGA: Recv ZSGSRD 30090
17-03-17 22:17:03.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:03.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:03.788 -07 000000569 INF: FPGA: Recv ZSGSRD 30086
17-03-17 22:17:03.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:03.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:03.798 -07 000000569 INF: FPGA: Recv ZSGSRD 30077
17-03-17 22:17:03.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:03.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:03.808 -07 000000478 INF: FPGA: Recv ZSGSRD 30084
17-03-17 22:17:03.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:03.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:03.818 -07 000000627 INF: FPGA: Recv ZSGSRD 30076
17-03-17 22:17:03.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:03.828 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:17:03.828 -07 000000569 INF: FPGA: Recv ZPIEZORD 25794
17-03-17 22:17:03.838 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:03.838 -07 000000610 INF: Z Motor: Piezo is near 35.1 V (nominally 0 to 100 V), expect near 44.5 V, since DAC is at 4.453 V. Piezo Error = -9.4 V.
17-03-17 22:17:03.838 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.6 um, Read 10 ADC samples: Avg = 30084 (-132.8 uncal um), Error = 0.8 uncal um, Median = 30083 (-132.8 uncal um), StdDev = 6 (0.0 uncal um), Range = 19 (0.1 uncal um), Min = 30076 (-132.8 uncal um), Max = 30095 (-132.9 uncal um), Pos Noise = 11 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 22:17:03.838 -07 000000610 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30084, posNoise = 11, negNoise = 8
17-03-17 22:17:03.838 -07 000000610 INF: Z Motor: After move to -0.133582, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:17:03.838 -07 000000610 INF: Z Motor: Settle wait time = 1559 ms, measure time = 102 ms (allowed 150 ms), total time = 1661 ms
17-03-17 22:17:03.838 -07 000000610 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 22:17:03.888 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1928 ms
17-03-17 22:17:03.888 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:17:03.888 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.56396484375, Z-position -0.133589350083872. ----------
17-03-17 22:17:03.888 -07 000000610 INF: Cycle	61	Tile	3	Exposure Settings		A	448	G	215	T	215	C	448
17-03-17 22:17:03.888 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 29004, sync = True, waitForSettling = True)
17-03-17 22:17:03.888 -07 000000610 INF: Z Motor: Moving to -0.132772 mm, started at -0.133589 mm, distance = 0.82 um
17-03-17 22:17:03.888 -07 000000610 INF: FPGA: Xmit ZDACW 29004\n [Z Motor]
17-03-17 22:17:03.888 -07 000000012 INF: FPGA: Recv ZDACW
17-03-17 22:17:03.898 -07 000000610 INF: FPGA: 'ZDACW 29004' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 22:17:03.898 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:17:03.898 -07 000000012 INF: FPGA: Recv ZDACR 29004
17-03-17 22:17:03.908 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:03.908 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:17:04.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:04.058 -07 000000012 INF: FPGA: Recv ZSGSRD 29959
17-03-17 22:17:04.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:17:04.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:04.068 -07 000000486 INF: FPGA: Recv ZSGSRD 29965
17-03-17 22:17:04.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:04.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:04.078 -07 000000627 INF: FPGA: Recv ZSGSRD 29959
17-03-17 22:17:04.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:04.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:04.088 -07 000000627 INF: FPGA: Recv ZSGSRD 29962
17-03-17 22:17:04.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:04.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:04.098 -07 000000462 INF: FPGA: Recv ZSGSRD 29955
17-03-17 22:17:04.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:04.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:04.108 -07 000000627 INF: FPGA: Recv ZSGSRD 29960
17-03-17 22:17:04.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:04.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:04.118 -07 000000462 INF: FPGA: Recv ZSGSRD 29953
17-03-17 22:17:04.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:04.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:04.128 -07 000000627 INF: FPGA: Recv ZSGSRD 29949
17-03-17 22:17:04.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:04.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:04.138 -07 000000462 INF: FPGA: Recv ZSGSRD 29960
17-03-17 22:17:04.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:04.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:04.148 -07 000000627 INF: FPGA: Recv ZSGSRD 29958
17-03-17 22:17:04.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:04.158 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:17:04.158 -07 000000462 INF: FPGA: Recv ZPIEZORD 25633
17-03-17 22:17:04.168 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:04.168 -07 000000610 INF: Z Motor: Piezo is near 34.8 V (nominally 0 to 100 V), expect near 44.3 V, since DAC is at 4.426 V. Piezo Error = -9.5 V.
17-03-17 22:17:04.168 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.8 um, Read 10 ADC samples: Avg = 29958 (-132.0 uncal um), Error = 0.8 uncal um, Median = 29959 (-132.0 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 29949 (-131.9 uncal um), Max = 29965 (-132.0 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 22:17:04.168 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29958, posNoise = 7, negNoise = 9
17-03-17 22:17:04.168 -07 000000610 INF: Z Motor: After move to -0.132772, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:17:04.168 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 22:17:04.168 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:17:04.168 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:17:04.168 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:17:04.168 -07 000000478 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:17:04.168 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:17:04.168 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:17:04.168 -07 000000486 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:17:04.168 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:17:04.168 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 22:17:04.168 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-17 22:17:04.168 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:17:04.168 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:17:04.178 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:17:04.178 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:17:04.178 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:17:04.178 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:17:04.188 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 22:17:04.188 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 22:17:04.188 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-17 22:17:04.188 -07 000000486 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 18 ms.
17-03-17 22:17:04.188 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 448 448 215 215 29181 150\n [Camera]
17-03-17 22:17:04.388 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:17:04.838 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 640
17-03-17 22:17:04.838 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 640
17-03-17 22:17:04.838 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:17:04.838 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:17:04.838 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 22:17:04.838 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 640
17-03-17 22:17:04.838 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 640
17-03-17 22:17:04.838 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:17:04.838 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:17:04.838 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 2164362856, 0x0, 418435064) start.
17-03-17 22:17:05.028 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29181 833
17-03-17 22:17:05.178 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning grn on 986
17-03-17 22:17:05.218 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 2164362856, 0x0, 418435064) end. Duration was 372 ms.
17-03-17 22:17:05.218 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-17 22:17:05.218 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:17:05.218 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 22:17:05.218 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 22:17:05.218 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:17:05.218 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:17:05.218 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:17:05.218 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 22:17:05.228 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 22:17:05.398 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1198
17-03-17 22:17:05.398 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1198
17-03-17 22:17:05.398 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:17:05.398 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:17:05.398 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 2199785120, 0x0, 391868352) start.
17-03-17 22:17:05.398 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1198
17-03-17 22:17:05.398 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1198
17-03-17 22:17:05.398 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:17:05.398 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:17:05.398 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) start.
17-03-17 22:17:05.588 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP 1391
17-03-17 22:17:05.588 -07 000000478 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:17:05.588 -07 000000610 INF: FPGA: 'CAMDBLSNAP 448 448 215 215 29181 150' command took 2 ms to send, 1394 ms to get response, and 1398 ms overall
17-03-17 22:17:05.588 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 22:17:05.588 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.56396484375, Z-Position -0.13277989935401. ------
17-03-17 22:17:05.598 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:17:05.598 -07 000000429 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.13919 mm
17-03-17 22:17:05.598 -07 000000429 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:17:05.598 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:17:05.598 -07 000000561 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-17 22:17:05.598 -07 000000561 INF: Y Motor: Moving to 62.4026 mm, started at 61.5640 mm, delta = 0.8386 mm
17-03-17 22:17:05.598 -07 000000576 INF: Z Motor: Entering MoveAbsStepped (DAC = 30406, sync = True, waitForSettling = False)
17-03-17 22:17:05.598 -07 000000576 INF: Z Motor: Moving to -0.139190 mm, started at -0.132780 mm, distance = -6.41 um
17-03-17 22:17:05.608 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:05.608 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:17:05.608 -07 000000462 INF: FPGA: Recv YRDPOS 126083
17-03-17 22:17:05.618 -07 000000576 INF: FPGA: Xmit ZDACW 30406\n [Z Motor]
17-03-17 22:17:05.618 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 22:17:05.618 -07 000000561 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:17:05.618 -07 000000561 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:17:05.618 -07 000000561 INF: Y Motor: Moving 1342 steps-18
17-03-17 22:17:05.618 -07 000000478 INF: FPGA: Recv ZDACW
17-03-17 22:17:05.628 -07 000000569 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:17:05.628 -07 000000576 INF: FPGA: 'ZDACW 30406' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-17 22:17:05.638 -07 000000561 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:17:05.648 -07 000000576 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:17:05.648 -07 000000431 INF: FPGA: Recv ZDACR 30406
17-03-17 22:17:05.658 -07 000000576 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:17:05.658 -07 000000576 INF: Z Motor: MoveAbsStepped took 56 ms (did NOT wait for settling yet))
17-03-17 22:17:05.798 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 2199785120, 0x0, 391868352) end. Duration was 401 ms.
17-03-17 22:17:05.798 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 22:17:05.798 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:17:05.798 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) end. Duration was 401 ms.
17-03-17 22:17:05.798 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 22:17:05.798 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:17:05.808 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:17:05.808 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-17 22:17:05.808 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:17:05.808 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-17 22:17:05.828 -07 000000486 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:17:05.828 -07 000000569 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 22:17:06.008 -07 000000576 INF: FPGA: Recv YMVTILE
17-03-17 22:17:06.008 -07 000000561 INF: FPGA: 'YMVTILE 1327' command took 1 ms to send, 369 ms to get response, and 399 ms overall
17-03-17 22:17:06.048 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:17:06.058 -07 000000576 INF: FPGA: Recv YRDPOS 127786
17-03-17 22:17:06.058 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 5 ms to get response, and 6 ms overall
17-03-17 22:17:06.058 -07 000000561 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:17:06.058 -07 000000561 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-17 22:17:06.058 -07 000000561 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 399 ms, distance = 0.839 mm, average velocity = 2.102 mm/sec
17-03-17 22:17:07.008 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:17:07.828 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:17:07.828 -07 000000462 INF: FPGA: Recv YRDPOS 127786
17-03-17 22:17:07.828 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 811 ms to get response, and 821 ms overall
17-03-17 22:17:07.828 -07 000000561 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:17:07.828 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 60. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=959, R2=982, Total=1941. Warn if over 250 bubbles per interval.
17-03-17 22:17:07.828 -07 000000486 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 61, FrontChillerTemperature: 4.003063,
17-03-17 22:17:07.848 -07 000000561 INF: Y Motor: After move to 62.402607, error = -0.007099, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:17:07.848 -07 000000561 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:17:07.848 -07 000000561 INF: Y Motor: Moved to 62.3955 after 2254 ms (table move)
17-03-17 22:17:07.858 -07 000000429 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139190 mm (DAC = 30406)
17-03-17 22:17:07.868 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:07.868 -07 000000551 INF: FPGA: Recv ZSGSRD 30957
17-03-17 22:17:07.878 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-17 22:17:07.878 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:07.878 -07 000000551 INF: FPGA: Recv ZSGSRD 30956
17-03-17 22:17:07.888 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:07.888 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:07.888 -07 000000569 INF: FPGA: Recv ZSGSRD 30963
17-03-17 22:17:07.898 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:07.898 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:07.898 -07 000000551 INF: FPGA: Recv ZSGSRD 30955
17-03-17 22:17:07.908 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:07.908 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:07.908 -07 000000486 INF: FPGA: Recv ZSGSRD 30960
17-03-17 22:17:07.918 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:17:07.918 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:07.918 -07 000000486 INF: FPGA: Recv ZSGSRD 30955
17-03-17 22:17:07.928 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:07.928 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:07.928 -07 000000462 INF: FPGA: Recv ZSGSRD 30954
17-03-17 22:17:07.938 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:07.938 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:07.938 -07 000000462 INF: FPGA: Recv ZSGSRD 30961
17-03-17 22:17:07.948 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:07.948 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:07.948 -07 000000462 INF: FPGA: Recv ZSGSRD 30952
17-03-17 22:17:07.958 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:07.958 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:07.958 -07 000000462 INF: FPGA: Recv ZSGSRD 30958
17-03-17 22:17:07.968 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:07.968 -07 000000429 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:17:07.968 -07 000000486 INF: FPGA: Recv ZPIEZORD 26958
17-03-17 22:17:07.978 -07 000000429 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:07.978 -07 000000429 INF: Z Motor: Piezo is near 37.6 V (nominally 0 to 100 V), expect near 46.4 V, since DAC is at 4.640 V. Piezo Error = -8.8 V.
17-03-17 22:17:07.978 -07 000000429 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.2 um, Read 10 ADC samples: Avg = 30957 (-138.4 uncal um), Error = 0.8 uncal um, Median = 30956 (-138.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30952 (-138.4 uncal um), Max = 30963 (-138.4 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 22:17:07.978 -07 000000429 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30957, posNoise = 6, negNoise = 5
17-03-17 22:17:07.978 -07 000000429 INF: Z Motor: After move to -0.139190, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:17:07.978 -07 000000429 INF: Z Motor: Settle wait time = 2257 ms, measure time = 119 ms (allowed 150 ms), total time = 2376 ms
17-03-17 22:17:07.978 -07 000000429 INF: Z Motor: Waiting extra 31 ms after reading position to reach expected total of 150 ms
17-03-17 22:17:08.018 -07 000000429 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2419 ms
17-03-17 22:17:08.018 -07 000000429 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:17:08.018 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:17:08.018 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:17:08.018 -07 000000448 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:17:08.018 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:17:08.018 -07 000000478 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:17:08.018 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:17:08.018 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:17:08.018 -07 000000478 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:17:08.028 -07 000000478 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 22:17:08.028 -07 000000478 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:17:08.028 -07 000000478 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 22:17:08.028 -07 000000478 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-17 22:17:08.038 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:17:08.088 -07 000000623 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:17:08.288 -07 000000448 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:17:08.288 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:17:08.288 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:17:08.288 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1441730320, 0x0, 559484976) start.
17-03-17 22:17:08.328 -07 000000551 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:17:08.328 -07 000000448 INF: FPGA: Recv CAMSNAP
17-03-17 22:17:08.328 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 285 ms overall
17-03-17 22:17:08.398 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1441730320, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 22:17:08.398 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:17:08.408 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:17:08.408 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 22:17:08.428 -07 000000486 INF: Autofocus start
17-03-17 22:17:08.428 -07 000000486 INF: MeasureProfile start
17-03-17 22:17:08.428 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:17:08.428 -07 000000551 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:17:08.438 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:17:08.438 -07 000000569 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:17:08.438 -07 000000486 INF: MeasureProfile done
17-03-17 22:17:08.438 -07 000000486 INF: X=-16  Z correction [um]=-0.08128808
17-03-17 22:17:08.438 -07 000000486 INF: Autofocus finished
17-03-17 22:17:08.638 -07 000000448 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:17:08.638 -07 000000569 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:17:08.638 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.3955078125, Z-position -0.139197687283629. ----------
17-03-17 22:17:08.638 -07 000000610 INF: Cycle	61	Tile	4	Exposure Settings		A	448	G	215	T	215	C	448
17-03-17 22:17:08.648 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28901, sync = True, waitForSettling = True)
17-03-17 22:17:08.648 -07 000000610 INF: Z Motor: Moving to -0.132300 mm, started at -0.139198 mm, distance = 6.90 um
17-03-17 22:17:08.648 -07 000000610 INF: FPGA: Xmit ZDACW 28901\n [Z Motor]
17-03-17 22:17:08.648 -07 000000462 INF: FPGA: Recv ZDACW
17-03-17 22:17:08.658 -07 000000610 INF: FPGA: 'ZDACW 28901' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:17:08.658 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:17:08.658 -07 000000462 INF: FPGA: Recv ZDACR 28901
17-03-17 22:17:08.668 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:08.668 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:17:08.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:08.818 -07 000000462 INF: FPGA: Recv ZSGSRD 29877
17-03-17 22:17:08.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:17:08.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:08.828 -07 000000462 INF: FPGA: Recv ZSGSRD 29885
17-03-17 22:17:08.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:08.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:08.838 -07 000000462 INF: FPGA: Recv ZSGSRD 29876
17-03-17 22:17:08.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:08.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:08.848 -07 000000462 INF: FPGA: Recv ZSGSRD 29877
17-03-17 22:17:08.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:08.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:08.858 -07 000000462 INF: FPGA: Recv ZSGSRD 29888
17-03-17 22:17:08.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:08.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:08.868 -07 000000462 INF: FPGA: Recv ZSGSRD 29883
17-03-17 22:17:08.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:08.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:08.878 -07 000000462 INF: FPGA: Recv ZSGSRD 29885
17-03-17 22:17:08.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:08.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:08.888 -07 000000462 INF: FPGA: Recv ZSGSRD 29882
17-03-17 22:17:08.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:08.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:08.898 -07 000000486 INF: FPGA: Recv ZSGSRD 29881
17-03-17 22:17:08.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:08.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:08.908 -07 000000462 INF: FPGA: Recv ZSGSRD 29884
17-03-17 22:17:08.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:08.918 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:17:08.918 -07 000000462 INF: FPGA: Recv ZPIEZORD 25552
17-03-17 22:17:08.928 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:08.928 -07 000000610 INF: Z Motor: Piezo is near 34.6 V (nominally 0 to 100 V), expect near 44.1 V, since DAC is at 4.410 V. Piezo Error = -9.5 V.
17-03-17 22:17:08.928 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.3 um, Read 10 ADC samples: Avg = 29882 (-131.5 uncal um), Error = 0.8 uncal um, Median = 29882 (-131.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29876 (-131.5 uncal um), Max = 29888 (-131.5 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 22:17:08.928 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29882, posNoise = 6, negNoise = 6
17-03-17 22:17:08.928 -07 000000610 INF: Z Motor: After move to -0.132300, error = 0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:17:08.928 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 22:17:08.928 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:17:08.928 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:17:08.928 -07 000000431 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:17:08.928 -07 000000623 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:17:08.928 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:17:08.928 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:17:08.928 -07 000000448 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:17:08.928 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:17:08.928 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:17:08.928 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:17:08.928 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:17:08.928 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:17:08.938 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:17:08.938 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:17:08.938 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 22:17:08.938 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:17:08.948 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 22:17:08.948 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 22:17:08.948 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 22:17:08.948 -07 000000448 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 22:17:08.948 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 448 448 215 215 29078 150\n [Camera]
17-03-17 22:17:09.148 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:17:09.598 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 640
17-03-17 22:17:09.598 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 640
17-03-17 22:17:09.598 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:17:09.598 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:17:09.598 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-17 22:17:09.598 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 640
17-03-17 22:17:09.598 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 640
17-03-17 22:17:09.598 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:17:09.598 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:17:09.598 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-17 22:17:09.788 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29078 833
17-03-17 22:17:09.938 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP turning grn on 983
17-03-17 22:17:09.968 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 22:17:09.968 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 378 ms.
17-03-17 22:17:09.978 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-17 22:17:09.978 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:17:09.978 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 22:17:09.978 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:17:09.978 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:17:09.978 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 22:17:09.978 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:17:09.988 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 22:17:10.148 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1198
17-03-17 22:17:10.148 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1198
17-03-17 22:17:10.158 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:17:10.158 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:17:10.158 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1198
17-03-17 22:17:10.158 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1198
17-03-17 22:17:10.158 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) start.
17-03-17 22:17:10.158 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:17:10.158 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:17:10.158 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 22:17:10.338 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP 1391
17-03-17 22:17:10.348 -07 000000623 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:17:10.348 -07 000000610 INF: FPGA: 'CAMDBLSNAP 448 448 215 215 29078 150' command took 2 ms to send, 1390 ms to get response, and 1398 ms overall
17-03-17 22:17:10.348 -07 000000610 INF: Skipping AutoFocus in Tile 5: adopting Best-Z from the cache: -0.133070
17-03-17 22:17:10.348 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.13307 mm
17-03-17 22:17:10.348 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:17:10.348 -07 000000486 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-17 22:17:10.348 -07 000000486 INF: Y Motor: Moving to 63.2326 mm, started at 62.3955 mm, delta = 0.8371 mm
17-03-17 22:17:10.348 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:17:10.348 -07 000000551 INF: Z Motor: Entering MoveAbsStepped (DAC = 29069, sync = True, waitForSettling = False)
17-03-17 22:17:10.348 -07 000000551 INF: Z Motor: Moving to -0.133069 mm, started at -0.132292 mm, distance = -0.78 um
17-03-17 22:17:10.348 -07 000000431 INF: FPGA: Recv YRDPOS 127787
17-03-17 22:17:10.358 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 22:17:10.358 -07 000000486 INF: Y Motor: Encoder = 127787 = motor step 99833.6 = 62.3960 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:17:10.358 -07 000000551 INF: FPGA: Xmit ZDACW 29069\n [Z Motor]
17-03-17 22:17:10.358 -07 000000486 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:17:10.358 -07 000000486 INF: Y Motor: Moving 1339 steps-15
17-03-17 22:17:10.358 -07 000000569 INF: FPGA: Recv ZDACW
17-03-17 22:17:10.368 -07 000000551 INF: FPGA: 'ZDACW 29069' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 22:17:10.368 -07 000000551 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:17:10.368 -07 000000462 INF: FPGA: Recv ZDACR 29069
17-03-17 22:17:10.378 -07 000000551 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:17:10.378 -07 000000551 INF: Z Motor: MoveAbsStepped took 25 ms (did NOT wait for settling yet))
17-03-17 22:17:10.378 -07 000000486 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:17:10.558 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 405 ms.
17-03-17 22:17:10.558 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-17 22:17:10.558 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:17:10.558 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) end. Duration was 406 ms.
17-03-17 22:17:10.558 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-17 22:17:10.558 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:17:10.568 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:17:10.568 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 22:17:10.568 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 415 ms.
17-03-17 22:17:10.688 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 537 ms.
17-03-17 22:17:10.748 -07 000000448 INF: FPGA: Recv YMVTILE
17-03-17 22:17:10.748 -07 000000486 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-17 22:17:10.788 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:17:10.798 -07 000000623 INF: FPGA: Recv YRDPOS 129483
17-03-17 22:17:10.798 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 22:17:10.798 -07 000000486 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:17:10.798 -07 000000486 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-17 22:17:10.798 -07 000000486 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.837 mm, average velocity = 2.119 mm/sec
17-03-17 22:17:11.748 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:17:11.748 -07 000000569 INF: FPGA: Recv YRDPOS 129484
17-03-17 22:17:11.758 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:17:11.758 -07 000000486 INF: Y Motor: Encoder = 129484 = motor step 101159.4 = 63.2246 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:17:11.778 -07 000000486 INF: Y Motor: After move to 63.232609, error = -0.007999, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:17:11.778 -07 000000486 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 22:17:11.778 -07 000000486 INF: Y Motor: Moved to 63.2246 after 1429 ms (table move)
17-03-17 22:17:11.778 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.133069 mm (DAC = 29069)
17-03-17 22:17:11.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:11.788 -07 000000623 INF: FPGA: Recv ZSGSRD 30006
17-03-17 22:17:11.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 22:17:11.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:11.788 -07 000000623 INF: FPGA: Recv ZSGSRD 30002
17-03-17 22:17:11.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:17:11.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:11.798 -07 000000623 INF: FPGA: Recv ZSGSRD 30003
17-03-17 22:17:11.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:11.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:11.808 -07 000000623 INF: FPGA: Recv ZSGSRD 30009
17-03-17 22:17:11.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:11.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:11.818 -07 000000623 INF: FPGA: Recv ZSGSRD 30013
17-03-17 22:17:11.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:11.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:11.828 -07 000000623 INF: FPGA: Recv ZSGSRD 30006
17-03-17 22:17:11.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:11.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:11.838 -07 000000623 INF: FPGA: Recv ZSGSRD 30004
17-03-17 22:17:11.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:11.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:11.848 -07 000000478 INF: FPGA: Recv ZSGSRD 29997
17-03-17 22:17:11.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:11.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:11.858 -07 000000478 INF: FPGA: Recv ZSGSRD 30003
17-03-17 22:17:11.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:11.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:11.868 -07 000000478 INF: FPGA: Recv ZSGSRD 30005
17-03-17 22:17:11.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:11.878 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:17:11.878 -07 000000623 INF: FPGA: Recv ZPIEZORD 25744
17-03-17 22:17:11.888 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:11.888 -07 000000610 INF: Z Motor: Piezo is near 35.0 V (nominally 0 to 100 V), expect near 44.4 V, since DAC is at 4.436 V. Piezo Error = -9.4 V.
17-03-17 22:17:11.888 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.1 um, Read 10 ADC samples: Avg = 30005 (-132.3 uncal um), Error = 0.8 uncal um, Median = 30004 (-132.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 29997 (-132.2 uncal um), Max = 30013 (-132.3 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 22:17:11.888 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30005, posNoise = 8, negNoise = 8
17-03-17 22:17:11.888 -07 000000610 INF: Z Motor: After move to -0.133069, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:17:11.888 -07 000000610 INF: Z Motor: Settle wait time = 1433 ms, measure time = 102 ms (allowed 150 ms), total time = 1535 ms
17-03-17 22:17:11.888 -07 000000610 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 22:17:11.938 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1587 ms
17-03-17 22:17:11.938 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:17:11.938 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.224609375, Z-position -0.133081837324672. ----------
17-03-17 22:17:11.938 -07 000000610 INF: Cycle	61	Tile	5	Exposure Settings		A	448	G	215	T	215	C	448
17-03-17 22:17:11.938 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28892, sync = True, waitForSettling = True)
17-03-17 22:17:11.938 -07 000000610 INF: Z Motor: Moving to -0.132259 mm, started at -0.133082 mm, distance = 0.82 um
17-03-17 22:17:11.938 -07 000000610 INF: FPGA: Xmit ZDACW 28892\n [Z Motor]
17-03-17 22:17:11.938 -07 000000462 INF: FPGA: Recv ZDACW
17-03-17 22:17:11.948 -07 000000610 INF: FPGA: 'ZDACW 28892' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:17:11.948 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:17:11.948 -07 000000431 INF: FPGA: Recv ZDACR 28892
17-03-17 22:17:11.958 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:11.958 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:17:11.958 -07 000000448 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:17:11.958 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 60. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=959, R2=982, Total=1941. Warn if over 250 bubbles per interval.
17-03-17 22:17:12.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:12.108 -07 000000429 INF: FPGA: Recv ZSGSRD 29876
17-03-17 22:17:12.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:12.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:12.118 -07 000000448 INF: FPGA: Recv ZSGSRD 29877
17-03-17 22:17:12.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:12.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:12.128 -07 000000551 INF: FPGA: Recv ZSGSRD 29885
17-03-17 22:17:12.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:12.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:12.138 -07 000000478 INF: FPGA: Recv ZSGSRD 29882
17-03-17 22:17:12.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:12.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:12.148 -07 000000618 INF: FPGA: Recv ZSGSRD 29879
17-03-17 22:17:12.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:12.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:12.158 -07 000000448 INF: FPGA: Recv ZSGSRD 29877
17-03-17 22:17:12.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:12.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:12.168 -07 000000012 INF: FPGA: Recv ZSGSRD 29872
17-03-17 22:17:12.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:12.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:12.178 -07 000000551 INF: FPGA: Recv ZSGSRD 29878
17-03-17 22:17:12.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:12.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:12.188 -07 000000486 INF: FPGA: Recv ZSGSRD 29876
17-03-17 22:17:12.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:12.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:12.198 -07 000000478 INF: FPGA: Recv ZSGSRD 29881
17-03-17 22:17:12.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:12.208 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:17:12.208 -07 000000576 INF: FPGA: Recv ZPIEZORD 25593
17-03-17 22:17:12.218 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:12.218 -07 000000610 INF: Z Motor: Piezo is near 34.7 V (nominally 0 to 100 V), expect near 44.1 V, since DAC is at 4.409 V. Piezo Error = -9.4 V.
17-03-17 22:17:12.218 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.3 um, Read 10 ADC samples: Avg = 29878 (-131.5 uncal um), Error = 0.8 uncal um, Median = 29878 (-131.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29872 (-131.4 uncal um), Max = 29885 (-131.5 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 22:17:12.218 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29878, posNoise = 7, negNoise = 6
17-03-17 22:17:12.218 -07 000000610 INF: Z Motor: After move to -0.132259, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:17:12.218 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-17 22:17:12.218 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:17:12.218 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:17:12.218 -07 000000478 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:17:12.218 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:17:12.218 -07 000000486 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:17:12.218 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:17:12.218 -07 000000429 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:17:12.218 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:17:12.218 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:17:12.218 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:17:12.218 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:17:12.218 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:17:12.228 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:17:12.228 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:17:12.228 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:17:12.228 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:17:12.228 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 22:17:12.228 -07 000000429 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 22:17:12.238 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 22:17:12.238 -07 000000486 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 22:17:12.238 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 448 448 215 215 29069 150\n [Camera]
17-03-17 22:17:12.438 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:17:12.888 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 641
17-03-17 22:17:12.888 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 641
17-03-17 22:17:12.888 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:17:12.888 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 641
17-03-17 22:17:12.888 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 641
17-03-17 22:17:12.888 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:17:12.898 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:17:12.898 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 1406045800, 0x0, 418435064) start.
17-03-17 22:17:12.898 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:17:12.898 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 22:17:13.078 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29069 833
17-03-17 22:17:13.188 -07 000000478 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 61, FrontChillerTemperature: 3.988112,
17-03-17 22:17:13.228 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning grn on 983
17-03-17 22:17:13.268 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 373 ms.
17-03-17 22:17:13.268 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 1406045800, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 22:17:13.268 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-17 22:17:13.268 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:17:13.268 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-17 22:17:13.268 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:17:13.278 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 22:17:13.278 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 22:17:13.278 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 22:17:13.278 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 22:17:13.438 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1198
17-03-17 22:17:13.438 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1198
17-03-17 22:17:13.448 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:17:13.448 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:17:13.448 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 1441730320, 0x0, 391868352) start.
17-03-17 22:17:13.448 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1198
17-03-17 22:17:13.448 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1198
17-03-17 22:17:13.448 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:17:13.448 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:17:13.448 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1477152584, 0x0, 418435064) start.
17-03-17 22:17:13.638 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP 1391
17-03-17 22:17:13.638 -07 000000431 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:17:13.638 -07 000000610 INF: FPGA: 'CAMDBLSNAP 448 448 215 215 29069 150' command took 2 ms to send, 1391 ms to get response, and 1397 ms overall
17-03-17 22:17:13.638 -07 000000610 INF: Skipping AutoFocus in Tile 6: adopting Best-Z from the cache: -0.132760
17-03-17 22:17:13.638 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.13276 mm
17-03-17 22:17:13.638 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:17:13.638 -07 000000429 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-17 22:17:13.638 -07 000000429 INF: Y Motor: Moving to 64.0626 mm, started at 63.2246 mm, delta = 0.8380 mm
17-03-17 22:17:13.638 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:17:13.638 -07 000000561 INF: Z Motor: Entering MoveAbsStepped (DAC = 29001, sync = True, waitForSettling = False)
17-03-17 22:17:13.638 -07 000000561 INF: Z Motor: Moving to -0.132758 mm, started at -0.132266 mm, distance = -0.49 um
17-03-17 22:17:13.638 -07 000000431 INF: FPGA: Recv YRDPOS 129484
17-03-17 22:17:13.648 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 22:17:13.648 -07 000000429 INF: Y Motor: Encoder = 129484 = motor step 101159.4 = 63.2246 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:17:13.648 -07 000000429 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:17:13.648 -07 000000429 INF: Y Motor: Moving 1341 steps-17
17-03-17 22:17:13.648 -07 000000561 INF: FPGA: Xmit ZDACW 29001\n [Z Motor]
17-03-17 22:17:13.648 -07 000000012 INF: FPGA: Recv ZDACW
17-03-17 22:17:13.658 -07 000000561 INF: FPGA: 'ZDACW 29001' command took 1 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 22:17:13.658 -07 000000561 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:17:13.658 -07 000000478 INF: FPGA: Recv ZDACR 29001
17-03-17 22:17:13.668 -07 000000429 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:17:13.668 -07 000000561 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:13.668 -07 000000561 INF: Z Motor: MoveAbsStepped took 24 ms (did NOT wait for settling yet))
17-03-17 22:17:13.838 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1477152584, 0x0, 418435064) end. Duration was 386 ms.
17-03-17 22:17:13.838 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 22:17:13.838 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:17:13.838 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 1441730320, 0x0, 391868352) end. Duration was 392 ms.
17-03-17 22:17:13.838 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 22:17:13.838 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:17:13.838 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:17:13.838 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:17:13.838 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 22:17:13.848 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 22:17:14.038 -07 000000618 INF: FPGA: Recv YMVTILE
17-03-17 22:17:14.038 -07 000000429 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 22:17:14.078 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:17:14.088 -07 000000551 INF: FPGA: Recv YRDPOS 131189
17-03-17 22:17:14.088 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 4 ms overall
17-03-17 22:17:14.088 -07 000000429 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:17:14.088 -07 000000429 INF: Y Motor: Position error before settling (table move) = -11 encoder counts (-0.005 mm)
17-03-17 22:17:14.088 -07 000000429 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.838 mm, average velocity = 2.106 mm/sec
17-03-17 22:17:15.038 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:17:15.038 -07 000000012 INF: FPGA: Recv YRDPOS 131189
17-03-17 22:17:15.048 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:17:15.048 -07 000000429 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:17:15.068 -07 000000429 INF: Y Motor: After move to 64.062607, error = -0.005478, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:17:15.068 -07 000000429 INF: Y Motor: Position error after settling (table move) = -11 encoder counts (-0.005 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:17:15.068 -07 000000429 INF: Y Motor: Moved to 64.0571 after 1425 ms (table move)
17-03-17 22:17:15.068 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.132758 mm (DAC = 29001)
17-03-17 22:17:15.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:15.068 -07 000000429 INF: FPGA: Recv ZSGSRD 29960
17-03-17 22:17:15.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:17:15.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:15.078 -07 000000478 INF: FPGA: Recv ZSGSRD 29952
17-03-17 22:17:15.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:15.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:15.088 -07 000000561 INF: FPGA: Recv ZSGSRD 29958
17-03-17 22:17:15.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:15.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:15.098 -07 000000561 INF: FPGA: Recv ZSGSRD 29958
17-03-17 22:17:15.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:15.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:15.108 -07 000000012 INF: FPGA: Recv ZSGSRD 29959
17-03-17 22:17:15.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:15.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:15.118 -07 000000561 INF: FPGA: Recv ZSGSRD 29956
17-03-17 22:17:15.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:15.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:15.128 -07 000000561 INF: FPGA: Recv ZSGSRD 29954
17-03-17 22:17:15.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:15.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:15.138 -07 000000012 INF: FPGA: Recv ZSGSRD 29950
17-03-17 22:17:15.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:15.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:15.148 -07 000000478 INF: FPGA: Recv ZSGSRD 29949
17-03-17 22:17:15.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:15.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:15.158 -07 000000478 INF: FPGA: Recv ZSGSRD 29956
17-03-17 22:17:15.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:15.168 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:17:15.168 -07 000000478 INF: FPGA: Recv ZPIEZORD 25683
17-03-17 22:17:15.178 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:15.178 -07 000000610 INF: Z Motor: Piezo is near 34.9 V (nominally 0 to 100 V), expect near 44.3 V, since DAC is at 4.425 V. Piezo Error = -9.4 V.
17-03-17 22:17:15.178 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.8 um, Read 10 ADC samples: Avg = 29955 (-132.0 uncal um), Error = 0.8 uncal um, Median = 29956 (-132.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29949 (-131.9 uncal um), Max = 29960 (-132.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 22:17:15.178 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29955, posNoise = 5, negNoise = 6
17-03-17 22:17:15.178 -07 000000610 INF: Z Motor: After move to -0.132758, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:17:15.178 -07 000000610 INF: Z Motor: Settle wait time = 1427 ms, measure time = 107 ms (allowed 150 ms), total time = 1534 ms
17-03-17 22:17:15.178 -07 000000610 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 22:17:15.228 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1586 ms
17-03-17 22:17:15.228 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:17:15.228 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.05712890625, Z-position -0.132760626717584. ----------
17-03-17 22:17:15.228 -07 000000610 INF: Cycle	61	Tile	6	Exposure Settings		A	448	G	215	T	215	C	448
17-03-17 22:17:15.228 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28825, sync = True, waitForSettling = True)
17-03-17 22:17:15.228 -07 000000610 INF: Z Motor: Moving to -0.131952 mm, started at -0.132761 mm, distance = 0.81 um
17-03-17 22:17:15.228 -07 000000610 INF: FPGA: Xmit ZDACW 28825\n [Z Motor]
17-03-17 22:17:15.228 -07 000000561 INF: FPGA: Recv ZDACW
17-03-17 22:17:15.238 -07 000000610 INF: FPGA: 'ZDACW 28825' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 22:17:15.238 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:17:15.238 -07 000000618 INF: FPGA: Recv ZDACR 28825
17-03-17 22:17:15.248 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:15.248 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:17:15.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:15.398 -07 000000569 INF: FPGA: Recv ZSGSRD 29829
17-03-17 22:17:15.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:17:15.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:15.408 -07 000000551 INF: FPGA: Recv ZSGSRD 29833
17-03-17 22:17:15.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:15.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:15.418 -07 000000569 INF: FPGA: Recv ZSGSRD 29830
17-03-17 22:17:15.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:15.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:15.428 -07 000000623 INF: FPGA: Recv ZSGSRD 29825
17-03-17 22:17:15.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:15.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:15.438 -07 000000627 INF: FPGA: Recv ZSGSRD 29830
17-03-17 22:17:15.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:15.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:15.448 -07 000000627 INF: FPGA: Recv ZSGSRD 29830
17-03-17 22:17:15.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:15.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:15.458 -07 000000627 INF: FPGA: Recv ZSGSRD 29829
17-03-17 22:17:15.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:15.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:15.468 -07 000000627 INF: FPGA: Recv ZSGSRD 29827
17-03-17 22:17:15.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:15.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:15.478 -07 000000551 INF: FPGA: Recv ZSGSRD 29830
17-03-17 22:17:15.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:15.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:15.488 -07 000000012 INF: FPGA: Recv ZSGSRD 29832
17-03-17 22:17:15.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:17:15.498 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:17:15.498 -07 000000012 INF: FPGA: Recv ZPIEZORD 25530
17-03-17 22:17:15.508 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:15.508 -07 000000610 INF: Z Motor: Piezo is near 34.5 V (nominally 0 to 100 V), expect near 44.0 V, since DAC is at 4.398 V. Piezo Error = -9.4 V.
17-03-17 22:17:15.508 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.0 um, Read 10 ADC samples: Avg = 29830 (-131.2 uncal um), Error = 0.8 uncal um, Median = 29830 (-131.2 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29825 (-131.1 uncal um), Max = 29833 (-131.2 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 22:17:15.508 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29830, posNoise = 3, negNoise = 5
17-03-17 22:17:15.508 -07 000000610 INF: Z Motor: After move to -0.131952, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:17:15.508 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 22:17:15.508 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:17:15.508 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:17:15.508 -07 000000551 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:17:15.508 -07 000000486 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:17:15.508 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:17:15.508 -07 000000429 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:17:15.508 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:17:15.508 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:17:15.508 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:17:15.508 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:17:15.508 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 22:17:15.508 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:17:15.518 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 22:17:15.518 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:17:15.518 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:17:15.518 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:17:15.528 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 22:17:15.528 -07 000000486 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 22:17:15.528 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 22:17:15.528 -07 000000429 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 22:17:15.538 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 448 448 215 215 29001 150\n [Camera]
17-03-17 22:17:15.738 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:17:16.188 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 640
17-03-17 22:17:16.188 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 640
17-03-17 22:17:16.188 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:17:16.188 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 640
17-03-17 22:17:16.188 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 640
17-03-17 22:17:16.188 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:17:16.188 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:17:16.188 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1406045800, 0x0, 418435064) start.
17-03-17 22:17:16.188 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:17:16.188 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 22:17:16.378 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29001 833
17-03-17 22:17:16.528 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning grn on 983
17-03-17 22:17:16.558 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 372 ms.
17-03-17 22:17:16.558 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 372 ms.
17-03-17 22:17:16.558 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:17:16.568 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1406045800, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 22:17:16.568 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 22:17:16.568 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:17:16.568 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:17:16.568 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 22:17:16.568 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:17:16.578 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 22:17:16.738 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1198
17-03-17 22:17:16.738 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1198
17-03-17 22:17:16.738 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:17:16.738 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:17:16.738 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 1441468064, 0x0, 391868352) start.
17-03-17 22:17:16.738 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1198
17-03-17 22:17:16.738 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1198
17-03-17 22:17:16.748 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:17:16.748 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:17:16.748 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 1476890328, 0x0, 418435064) start.
17-03-17 22:17:16.928 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP 1390
17-03-17 22:17:16.928 -07 000000012 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:17:16.928 -07 000000610 INF: FPGA: 'CAMDBLSNAP 448 448 215 215 29001 150' command took 2 ms to send, 1388 ms to get response, and 1398 ms overall
17-03-17 22:17:16.938 -07 000000610 INF: Skipping AutoFocus in Tile 7: adopting Best-Z from the cache: -0.132487
17-03-17 22:17:16.938 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.13249 mm
17-03-17 22:17:16.938 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:17:16.948 -07 000000618 INF: Z Motor: Entering MoveAbsStepped (DAC = 28942, sync = True, waitForSettling = False)
17-03-17 22:17:16.948 -07 000000618 INF: Z Motor: Moving to -0.132488 mm, started at -0.131958 mm, distance = -0.53 um
17-03-17 22:17:16.948 -07 000000618 INF: FPGA: Xmit ZDACW 28942\n [Z Motor]
17-03-17 22:17:16.948 -07 000000623 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-17 22:17:16.948 -07 000000623 INF: Y Motor: Moving to 64.8926 mm, started at 64.0571 mm, delta = 0.8355 mm
17-03-17 22:17:16.948 -07 000000486 INF: FPGA: Recv ZDACW
17-03-17 22:17:16.958 -07 000000618 INF: FPGA: 'ZDACW 28942' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 22:17:16.958 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:17:16.958 -07 000000431 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:17:16.958 -07 000000486 INF: FPGA: Recv YRDPOS 131189
17-03-17 22:17:16.958 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 60. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=959, R2=982, Total=1941. Warn if over 250 bubbles per interval.
17-03-17 22:17:16.968 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 22:17:16.968 -07 000000623 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:17:16.968 -07 000000623 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:17:16.968 -07 000000623 INF: Y Motor: Moving 1337 steps-11
17-03-17 22:17:16.968 -07 000000618 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:17:16.968 -07 000000627 INF: FPGA: Recv ZDACR 28942
17-03-17 22:17:16.978 -07 000000618 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:17:16.978 -07 000000623 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:17:16.978 -07 000000618 INF: Z Motor: MoveAbsStepped took 25 ms (did NOT wait for settling yet))
17-03-17 22:17:17.118 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 1476890328, 0x0, 418435064) end. Duration was 376 ms.
17-03-17 22:17:17.118 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-17 22:17:17.118 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:17:17.128 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:17:17.128 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 1441468064, 0x0, 391868352) end. Duration was 383 ms.
17-03-17 22:17:17.128 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 22:17:17.128 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:17:17.128 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:17:17.128 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 22:17:17.128 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 22:17:17.348 -07 000000478 INF: FPGA: Recv YMVTILE
17-03-17 22:17:17.348 -07 000000623 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-17 22:17:17.388 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:17:17.398 -07 000000569 INF: FPGA: Recv YRDPOS 132872
17-03-17 22:17:17.398 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:17:17.398 -07 000000623 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:17:17.398 -07 000000623 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 22:17:17.398 -07 000000623 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.835 mm, average velocity = 2.159 mm/sec
17-03-17 22:17:18.348 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:17:18.348 -07 000000561 INF: FPGA: Recv YRDPOS 132872
17-03-17 22:17:18.358 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:18.358 -07 000000623 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:17:18.378 -07 000000623 INF: Y Motor: After move to 64.892609, error = -0.013702, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:17:18.378 -07 000000623 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:17:18.378 -07 000000623 INF: Y Motor: Moved to 64.8789 after 1429 ms (table move)
17-03-17 22:17:18.378 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.132488 mm (DAC = 28942)
17-03-17 22:17:18.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:18.388 -07 000000561 INF: FPGA: Recv ZSGSRD 29921
17-03-17 22:17:18.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 4 ms overall
17-03-17 22:17:18.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:18.388 -07 000000618 INF: FPGA: Recv ZSGSRD 29915
17-03-17 22:17:18.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:17:18.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:18.398 -07 000000561 INF: FPGA: Recv ZSGSRD 29916
17-03-17 22:17:18.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:18.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:18.408 -07 000000618 INF: FPGA: Recv ZSGSRD 29909
17-03-17 22:17:18.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:18.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:18.418 -07 000000561 INF: FPGA: Recv ZSGSRD 29919
17-03-17 22:17:18.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:18.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:18.428 -07 000000618 INF: FPGA: Recv ZSGSRD 29918
17-03-17 22:17:18.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:18.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:18.438 -07 000000561 INF: FPGA: Recv ZSGSRD 29908
17-03-17 22:17:18.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:18.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:18.448 -07 000000551 INF: FPGA: Recv ZSGSRD 29913
17-03-17 22:17:18.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:18.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:18.458 -07 000000623 INF: FPGA: Recv ZSGSRD 29906
17-03-17 22:17:18.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:18.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:18.468 -07 000000618 INF: FPGA: Recv ZSGSRD 29915
17-03-17 22:17:18.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:18.478 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:17:18.478 -07 000000431 INF: FPGA: Recv ZPIEZORD 25670
17-03-17 22:17:18.488 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:17:18.488 -07 000000610 INF: Z Motor: Piezo is near 34.8 V (nominally 0 to 100 V), expect near 44.2 V, since DAC is at 4.416 V. Piezo Error = -9.3 V.
17-03-17 22:17:18.488 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.5 um, Read 10 ADC samples: Avg = 29914 (-131.7 uncal um), Error = 0.8 uncal um, Median = 29915 (-131.7 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 29906 (-131.7 uncal um), Max = 29921 (-131.8 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 22:17:18.488 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29914, posNoise = 7, negNoise = 8
17-03-17 22:17:18.488 -07 000000610 INF: Z Motor: After move to -0.132488, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:17:18.488 -07 000000610 INF: Z Motor: Settle wait time = 1432 ms, measure time = 104 ms (allowed 150 ms), total time = 1536 ms
17-03-17 22:17:18.488 -07 000000610 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 22:17:18.538 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1594 ms
17-03-17 22:17:18.538 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:17:18.538 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87890625, Z-position -0.132497234019772. ----------
17-03-17 22:17:18.538 -07 000000610 INF: Cycle	61	Tile	7	Exposure Settings		A	448	G	215	T	215	C	448
17-03-17 22:17:18.538 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28765, sync = True, waitForSettling = True)
17-03-17 22:17:18.538 -07 000000610 INF: Z Motor: Moving to -0.131678 mm, started at -0.132497 mm, distance = 0.82 um
17-03-17 22:17:18.538 -07 000000610 INF: FPGA: Xmit ZDACW 28765\n [Z Motor]
17-03-17 22:17:18.538 -07 000000429 INF: FPGA: Recv ZDACW
17-03-17 22:17:18.548 -07 000000610 INF: FPGA: 'ZDACW 28765' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 22:17:18.568 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:17:18.568 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 61, FrontChillerTemperature: 4.009895,
17-03-17 22:17:18.568 -07 000000569 INF: FPGA: Recv ZDACR 28765
17-03-17 22:17:18.578 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:17:18.578 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:17:18.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:18.728 -07 000000448 INF: FPGA: Recv ZSGSRD 29797
17-03-17 22:17:18.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:18.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:18.738 -07 000000569 INF: FPGA: Recv ZSGSRD 29789
17-03-17 22:17:18.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:18.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:18.748 -07 000000486 INF: FPGA: Recv ZSGSRD 29784
17-03-17 22:17:18.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:18.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:18.758 -07 000000569 INF: FPGA: Recv ZSGSRD 29789
17-03-17 22:17:18.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:18.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:18.768 -07 000000448 INF: FPGA: Recv ZSGSRD 29785
17-03-17 22:17:18.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:18.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:18.778 -07 000000478 INF: FPGA: Recv ZSGSRD 29786
17-03-17 22:17:18.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:18.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:18.788 -07 000000486 INF: FPGA: Recv ZSGSRD 29785
17-03-17 22:17:18.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:18.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:18.798 -07 000000569 INF: FPGA: Recv ZSGSRD 29789
17-03-17 22:17:18.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:18.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:18.808 -07 000000448 INF: FPGA: Recv ZSGSRD 29790
17-03-17 22:17:18.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:18.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:18.818 -07 000000569 INF: FPGA: Recv ZSGSRD 29792
17-03-17 22:17:18.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:18.828 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:17:18.828 -07 000000623 INF: FPGA: Recv ZPIEZORD 25467
17-03-17 22:17:18.838 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:18.838 -07 000000610 INF: Z Motor: Piezo is near 34.4 V (nominally 0 to 100 V), expect near 43.9 V, since DAC is at 4.389 V. Piezo Error = -9.5 V.
17-03-17 22:17:18.838 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.7 um, Read 10 ADC samples: Avg = 29789 (-130.9 uncal um), Error = 0.8 uncal um, Median = 29789 (-130.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29784 (-130.9 uncal um), Max = 29797 (-131.0 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 22:17:18.838 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29789, posNoise = 8, negNoise = 5
17-03-17 22:17:18.838 -07 000000610 INF: Z Motor: After move to -0.131678, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:17:18.838 -07 000000610 INF: Z Motor: MoveAbsStepped took 296 ms)
17-03-17 22:17:18.838 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:17:18.838 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:17:18.838 -07 000000448 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:17:18.838 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:17:18.838 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:17:18.838 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:17:18.838 -07 000000478 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:17:18.838 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:17:18.838 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:17:18.838 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:17:18.838 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:17:18.838 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:17:18.838 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 22:17:18.838 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:17:18.848 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:17:18.848 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:17:18.858 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 22:17:18.858 -07 000000478 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 22:17:18.858 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 22:17:18.858 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 22:17:18.858 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 448 448 215 215 28942 150\n [Camera]
17-03-17 22:17:19.068 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning red on 194
17-03-17 22:17:19.508 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 640
17-03-17 22:17:19.508 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 640
17-03-17 22:17:19.508 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:17:19.508 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:17:19.508 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 2164362856, 0x0, 391868352) start.
17-03-17 22:17:19.508 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 640
17-03-17 22:17:19.508 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 640
17-03-17 22:17:19.508 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:17:19.518 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:17:19.518 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2199785120, 0x0, 418435064) start.
17-03-17 22:17:19.698 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28942 833
17-03-17 22:17:19.848 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning grn on 983
17-03-17 22:17:19.898 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 2164362856, 0x0, 391868352) end. Duration was 385 ms.
17-03-17 22:17:19.898 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 22:17:19.898 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:17:19.898 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2199785120, 0x0, 418435064) end. Duration was 385 ms.
17-03-17 22:17:19.898 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-17 22:17:19.898 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:17:19.898 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:17:19.898 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 22:17:19.898 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:17:19.908 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 22:17:20.068 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1198
17-03-17 22:17:20.068 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1198
17-03-17 22:17:20.068 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:17:20.068 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:17:20.068 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 2235207384, 0x0, 391868352) start.
17-03-17 22:17:20.068 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1198
17-03-17 22:17:20.068 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1198
17-03-17 22:17:20.068 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:17:20.198 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:17:20.198 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 22:17:20.258 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP 1391
17-03-17 22:17:20.258 -07 000000618 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:17:20.258 -07 000000610 INF: FPGA: 'CAMDBLSNAP 448 448 215 215 28942 150' command took 2 ms to send, 1388 ms to get response, and 1400 ms overall
17-03-17 22:17:20.268 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 22:17:20.268 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.87890625, Z-Position -0.131694207502052. ------
17-03-17 22:17:20.268 -07 000000486 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:17:20.268 -07 000000627 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.13824 mm
17-03-17 22:17:20.268 -07 000000627 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:17:20.268 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:17:20.268 -07 000000618 INF: Z Motor: Entering MoveAbsStepped (DAC = 30199, sync = True, waitForSettling = False)
17-03-17 22:17:20.268 -07 000000618 INF: Z Motor: Moving to -0.138242 mm, started at -0.131694 mm, distance = -6.55 um
17-03-17 22:17:20.268 -07 000000623 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-17 22:17:20.268 -07 000000623 INF: Y Motor: Moving to 65.7226 mm, started at 64.8789 mm, delta = 0.8437 mm
17-03-17 22:17:20.278 -07 000000486 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 22:17:20.278 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:17:20.278 -07 000000478 INF: FPGA: Recv YRDPOS 132873
17-03-17 22:17:20.288 -07 000000618 INF: FPGA: Xmit ZDACW 30199\n [Z Motor]
17-03-17 22:17:20.288 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 22:17:20.288 -07 000000623 INF: Y Motor: Encoder = 132873 = motor step 103807.0 = 64.8794 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:17:20.288 -07 000000478 INF: FPGA: Recv ZDACW
17-03-17 22:17:20.288 -07 000000623 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:17:20.288 -07 000000623 INF: Y Motor: Moving 1349 steps-28
17-03-17 22:17:20.298 -07 000000486 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:17:20.298 -07 000000618 INF: FPGA: 'ZDACW 30199' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-17 22:17:20.308 -07 000000623 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:17:20.318 -07 000000618 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:17:20.318 -07 000000448 INF: FPGA: Recv ZDACR 30199
17-03-17 22:17:20.328 -07 000000618 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:17:20.328 -07 000000618 INF: Z Motor: MoveAbsStepped took 51 ms (did NOT wait for settling yet))
17-03-17 22:17:20.448 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 2235207384, 0x0, 391868352) end. Duration was 382 ms.
17-03-17 22:17:20.448 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 22:17:20.448 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:17:20.458 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:17:20.458 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 22:17:20.498 -07 000000429 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:17:20.498 -07 000000486 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 22:17:20.568 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 372 ms.
17-03-17 22:17:20.568 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-17 22:17:20.568 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:17:20.568 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:17:20.578 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 505 ms.
17-03-17 22:17:20.688 -07 000000448 INF: FPGA: Recv YMVTILE
17-03-17 22:17:20.688 -07 000000623 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 372 ms to get response, and 394 ms overall
17-03-17 22:17:20.728 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:17:20.728 -07 000000012 INF: FPGA: Recv YRDPOS 134582
17-03-17 22:17:20.738 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:17:20.738 -07 000000623 INF: Y Motor: Encoder = 134582 = motor step 105142.2 = 65.7139 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:17:20.738 -07 000000623 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-17 22:17:20.738 -07 000000623 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.844 mm, average velocity = 2.136 mm/sec
17-03-17 22:17:21.688 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:17:21.688 -07 000000561 INF: FPGA: Recv YRDPOS 134583
17-03-17 22:17:21.698 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:17:21.698 -07 000000623 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:17:21.718 -07 000000623 INF: Y Motor: After move to 65.722610, error = -0.008255, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:17:21.718 -07 000000623 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 22:17:21.718 -07 000000623 INF: Y Motor: Moved to 65.7144 after 1448 ms (table move)
17-03-17 22:17:21.728 -07 000000627 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138242 mm (DAC = 30199)
17-03-17 22:17:21.728 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:21.728 -07 000000012 INF: FPGA: Recv ZSGSRD 30804
17-03-17 22:17:21.738 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:17:21.738 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:21.738 -07 000000486 INF: FPGA: Recv ZSGSRD 30810
17-03-17 22:17:21.748 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:21.748 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:21.748 -07 000000561 INF: FPGA: Recv ZSGSRD 30812
17-03-17 22:17:21.758 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:21.758 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:21.758 -07 000000623 INF: FPGA: Recv ZSGSRD 30809
17-03-17 22:17:21.768 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:21.768 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:21.768 -07 000000569 INF: FPGA: Recv ZSGSRD 30812
17-03-17 22:17:21.778 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:21.778 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:21.778 -07 000000561 INF: FPGA: Recv ZSGSRD 30812
17-03-17 22:17:21.788 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:21.788 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:21.788 -07 000000551 INF: FPGA: Recv ZSGSRD 30802
17-03-17 22:17:21.798 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:21.798 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:21.798 -07 000000012 INF: FPGA: Recv ZSGSRD 30807
17-03-17 22:17:21.808 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:21.808 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:21.808 -07 000000551 INF: FPGA: Recv ZSGSRD 30812
17-03-17 22:17:21.818 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:21.818 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:21.818 -07 000000429 INF: FPGA: Recv ZSGSRD 30816
17-03-17 22:17:21.828 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:21.828 -07 000000627 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:17:21.828 -07 000000448 INF: FPGA: Recv ZPIEZORD 26811
17-03-17 22:17:21.838 -07 000000627 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:21.838 -07 000000627 INF: Z Motor: Piezo is near 37.3 V (nominally 0 to 100 V), expect near 46.1 V, since DAC is at 4.608 V. Piezo Error = -8.8 V.
17-03-17 22:17:21.838 -07 000000627 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.2 um, Read 10 ADC samples: Avg = 30810 (-137.5 uncal um), Error = 0.8 uncal um, Median = 30811 (-137.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30802 (-137.4 uncal um), Max = 30816 (-137.5 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 22:17:21.838 -07 000000627 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30810, posNoise = 6, negNoise = 8
17-03-17 22:17:21.838 -07 000000627 INF: Z Motor: After move to -0.138242, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:17:21.838 -07 000000627 INF: Z Motor: Settle wait time = 1453 ms, measure time = 109 ms (allowed 150 ms), total time = 1562 ms
17-03-17 22:17:21.838 -07 000000627 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-17 22:17:21.888 -07 000000627 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1615 ms
17-03-17 22:17:21.888 -07 000000627 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:17:21.888 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:17:21.888 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:17:21.888 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:17:21.888 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:17:21.888 -07 000000551 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:17:21.888 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:17:21.888 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:17:21.888 -07 000000551 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:17:21.898 -07 000000551 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:17:21.898 -07 000000551 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:17:21.908 -07 000000551 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 22:17:21.908 -07 000000551 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 22:17:21.908 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:17:21.958 -07 000000012 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:17:21.958 -07 000000448 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:17:21.958 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 60. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=959, R2=982, Total=1941. Warn if over 250 bubbles per interval.
17-03-17 22:17:22.148 -07 000000486 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:17:22.148 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:17:22.158 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:17:22.158 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591997688, 0x0, 559484976) start.
17-03-17 22:17:22.188 -07 000000012 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:17:22.188 -07 000000486 INF: FPGA: Recv CAMSNAP
17-03-17 22:17:22.198 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 285 ms overall
17-03-17 22:17:22.268 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591997688, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 22:17:22.268 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:17:22.278 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:17:22.278 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-17 22:17:22.298 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:17:22.298 -07 000000627 INF: Autofocus start
17-03-17 22:17:22.298 -07 000000627 INF: MeasureProfile start
17-03-17 22:17:22.298 -07 000000448 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:17:22.308 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 22:17:22.308 -07 000000561 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:17:22.308 -07 000000627 INF: MeasureProfile done
17-03-17 22:17:22.308 -07 000000627 INF: X=-70  Z correction [um]=-0.3441503
17-03-17 22:17:22.308 -07 000000627 INF: Autofocus finished
17-03-17 22:17:22.508 -07 000000618 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:17:22.508 -07 000000561 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:17:22.508 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.71435546875, Z-position -0.13825332809879. ----------
17-03-17 22:17:22.508 -07 000000610 INF: Cycle	61	Tile	8	Exposure Settings		A	448	G	215	T	215	C	448
17-03-17 22:17:22.518 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28636, sync = True, waitForSettling = True)
17-03-17 22:17:22.518 -07 000000610 INF: Z Motor: Moving to -0.131087 mm, started at -0.138253 mm, distance = 7.17 um
17-03-17 22:17:22.518 -07 000000610 INF: FPGA: Xmit ZDACW 28636\n [Z Motor]
17-03-17 22:17:22.518 -07 000000627 INF: FPGA: Recv ZDACW
17-03-17 22:17:22.528 -07 000000610 INF: FPGA: 'ZDACW 28636' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:17:22.528 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:17:22.528 -07 000000627 INF: FPGA: Recv ZDACR 28636
17-03-17 22:17:22.538 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:22.538 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:17:22.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:22.688 -07 000000627 INF: FPGA: Recv ZSGSRD 29698
17-03-17 22:17:22.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:22.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:22.698 -07 000000012 INF: FPGA: Recv ZSGSRD 29695
17-03-17 22:17:22.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:22.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:22.708 -07 000000012 INF: FPGA: Recv ZSGSRD 29689
17-03-17 22:17:22.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:22.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:22.718 -07 000000486 INF: FPGA: Recv ZSGSRD 29694
17-03-17 22:17:22.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:22.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:22.728 -07 000000486 INF: FPGA: Recv ZSGSRD 29699
17-03-17 22:17:22.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:22.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:22.738 -07 000000486 INF: FPGA: Recv ZSGSRD 29693
17-03-17 22:17:22.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:22.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:22.748 -07 000000486 INF: FPGA: Recv ZSGSRD 29694
17-03-17 22:17:22.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:22.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:22.758 -07 000000486 INF: FPGA: Recv ZSGSRD 29702
17-03-17 22:17:22.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:22.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:22.768 -07 000000486 INF: FPGA: Recv ZSGSRD 29693
17-03-17 22:17:22.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:22.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:22.778 -07 000000486 INF: FPGA: Recv ZSGSRD 29697
17-03-17 22:17:22.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:22.788 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:17:22.788 -07 000000012 INF: FPGA: Recv ZPIEZORD 25340
17-03-17 22:17:22.798 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:22.798 -07 000000610 INF: Z Motor: Piezo is near 34.1 V (nominally 0 to 100 V), expect near 43.7 V, since DAC is at 4.370 V. Piezo Error = -9.6 V.
17-03-17 22:17:22.798 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.1 um, Read 10 ADC samples: Avg = 29695 (-130.3 uncal um), Error = 0.8 uncal um, Median = 29694 (-130.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29689 (-130.3 uncal um), Max = 29702 (-130.4 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 22:17:22.798 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29695, posNoise = 7, negNoise = 6
17-03-17 22:17:22.798 -07 000000610 INF: Z Motor: After move to -0.131087, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:17:22.798 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 22:17:22.798 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:17:22.798 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:17:22.798 -07 000000448 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:17:22.798 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:17:22.798 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:17:22.798 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:17:22.798 -07 000000429 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:17:22.798 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:17:22.798 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-17 22:17:22.798 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:17:22.798 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:17:22.798 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:17:22.808 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 22:17:22.808 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:17:22.808 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 22:17:22.808 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:17:22.808 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 22:17:22.808 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 22:17:22.818 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 22:17:22.818 -07 000000429 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 22:17:22.818 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 448 448 215 215 28813 150\n [Camera]
17-03-17 22:17:23.018 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:17:23.468 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 640
17-03-17 22:17:23.468 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 640
17-03-17 22:17:23.468 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:17:23.468 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 640
17-03-17 22:17:23.468 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 640
17-03-17 22:17:23.468 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:17:23.478 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:17:23.478 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 2164362856, 0x0, 391868352) start.
17-03-17 22:17:23.488 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:17:23.488 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 2199785120, 0x0, 418435064) start.
17-03-17 22:17:23.658 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28813 833
17-03-17 22:17:23.808 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning grn on 983
17-03-17 22:17:23.858 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 2199785120, 0x0, 418435064) end. Duration was 367 ms.
17-03-17 22:17:23.858 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 368 ms.
17-03-17 22:17:23.858 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:17:23.858 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:17:23.858 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 2164362856, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 22:17:23.858 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-17 22:17:23.858 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:17:23.868 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:17:23.868 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 22:17:23.868 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 22:17:23.938 -07 000000623 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 61, FrontChillerTemperature: 4.046637,
17-03-17 22:17:24.028 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1198
17-03-17 22:17:24.028 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1198
17-03-17 22:17:24.028 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:17:24.028 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:17:24.028 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 1406045800, 0x0, 391868352) start.
17-03-17 22:17:24.028 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1198
17-03-17 22:17:24.028 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1198
17-03-17 22:17:24.028 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:17:24.028 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:17:24.028 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 1458343128, 0x0, 418435064) start.
17-03-17 22:17:24.218 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP 1391
17-03-17 22:17:24.218 -07 000000551 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:17:24.218 -07 000000610 INF: FPGA: 'CAMDBLSNAP 448 448 215 215 28813 150' command took 2 ms to send, 1392 ms to get response, and 1398 ms overall
17-03-17 22:17:24.218 -07 000000610 INF: Skipping AutoFocus in Tile 9: adopting Best-Z from the cache: -0.131466
17-03-17 22:17:24.218 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.13147 mm
17-03-17 22:17:24.218 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:17:24.218 -07 000000012 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-17 22:17:24.218 -07 000000012 INF: Y Motor: Moving to 66.5526 mm, started at 65.7144 mm, delta = 0.8382 mm
17-03-17 22:17:24.218 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:17:24.218 -07 000000569 INF: Z Motor: Entering MoveAbsStepped (DAC = 28719, sync = True, waitForSettling = False)
17-03-17 22:17:24.218 -07 000000569 INF: Z Motor: Moving to -0.131467 mm, started at -0.131090 mm, distance = -0.38 um
17-03-17 22:17:24.228 -07 000000448 INF: FPGA: Recv YRDPOS 134583
17-03-17 22:17:24.228 -07 000000569 INF: FPGA: Xmit ZDACW 28719\n [Z Motor]
17-03-17 22:17:24.228 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 22:17:24.228 -07 000000012 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:17:24.228 -07 000000012 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:17:24.228 -07 000000012 INF: Y Motor: Moving 1341 steps-18
17-03-17 22:17:24.228 -07 000000618 INF: FPGA: Recv ZDACW
17-03-17 22:17:24.238 -07 000000012 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:17:24.238 -07 000000569 INF: FPGA: 'ZDACW 28719' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 22:17:24.258 -07 000000569 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:17:24.258 -07 000000551 INF: FPGA: Recv ZDACR 28719
17-03-17 22:17:24.268 -07 000000569 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:17:24.388 -07 000000569 INF: Z Motor: MoveAbsStepped took 163 ms (did NOT wait for settling yet))
17-03-17 22:17:24.428 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 1458343128, 0x0, 418435064) end. Duration was 399 ms.
17-03-17 22:17:24.428 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 22:17:24.428 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:17:24.428 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 1406045800, 0x0, 391868352) end. Duration was 403 ms.
17-03-17 22:17:24.428 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 22:17:24.428 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:17:24.428 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:17:24.438 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 22:17:24.438 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-17 22:17:24.438 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-17 22:17:24.608 -07 000000459 INF: FPGA: Recv YMVTILE
17-03-17 22:17:24.608 -07 000000012 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 386 ms overall
17-03-17 22:17:24.648 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:17:24.658 -07 000000551 INF: FPGA: Recv YRDPOS 136272
17-03-17 22:17:24.658 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 22:17:24.658 -07 000000012 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:17:24.658 -07 000000012 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 22:17:24.658 -07 000000012 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.838 mm, average velocity = 2.166 mm/sec
17-03-17 22:17:25.608 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:17:25.608 -07 000000458 INF: FPGA: Recv YRDPOS 136272
17-03-17 22:17:25.618 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:25.618 -07 000000012 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:17:25.638 -07 000000012 INF: Y Motor: After move to 66.552605, error = -0.013542, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:17:25.638 -07 000000012 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:17:25.638 -07 000000012 INF: Y Motor: Moved to 66.5391 after 1418 ms (table move)
17-03-17 22:17:25.638 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.131467 mm (DAC = 28719)
17-03-17 22:17:25.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:25.648 -07 000000623 INF: FPGA: Recv ZSGSRD 29757
17-03-17 22:17:25.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 22:17:25.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:25.648 -07 000000462 INF: FPGA: Recv ZSGSRD 29747
17-03-17 22:17:25.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:25.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:25.658 -07 000000459 INF: FPGA: Recv ZSGSRD 29753
17-03-17 22:17:25.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:25.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:25.668 -07 000000569 INF: FPGA: Recv ZSGSRD 29758
17-03-17 22:17:25.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:25.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:25.678 -07 000000502 INF: FPGA: Recv ZSGSRD 29758
17-03-17 22:17:25.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:25.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:25.688 -07 000000462 INF: FPGA: Recv ZSGSRD 29752
17-03-17 22:17:25.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:25.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:25.698 -07 000000561 INF: FPGA: Recv ZSGSRD 29752
17-03-17 22:17:25.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:25.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:25.708 -07 000000551 INF: FPGA: Recv ZSGSRD 29755
17-03-17 22:17:25.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:25.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:25.718 -07 000000576 INF: FPGA: Recv ZSGSRD 29749
17-03-17 22:17:25.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:25.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:25.728 -07 000000458 INF: FPGA: Recv ZSGSRD 29750
17-03-17 22:17:25.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:25.738 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:17:25.738 -07 000000502 INF: FPGA: Recv ZPIEZORD 25446
17-03-17 22:17:25.748 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:25.748 -07 000000610 INF: Z Motor: Piezo is near 34.4 V (nominally 0 to 100 V), expect near 43.8 V, since DAC is at 4.382 V. Piezo Error = -9.5 V.
17-03-17 22:17:25.748 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.5 um, Read 10 ADC samples: Avg = 29753 (-130.7 uncal um), Error = 0.8 uncal um, Median = 29752 (-130.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29747 (-130.6 uncal um), Max = 29758 (-130.7 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 22:17:25.748 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29753, posNoise = 5, negNoise = 6
17-03-17 22:17:25.748 -07 000000610 INF: Z Motor: After move to -0.131467, error = 0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:17:25.748 -07 000000610 INF: Z Motor: Settle wait time = 1420 ms, measure time = 103 ms (allowed 150 ms), total time = 1523 ms
17-03-17 22:17:25.748 -07 000000610 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 22:17:25.798 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1575 ms
17-03-17 22:17:25.798 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:17:25.798 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.5390625, Z-position -0.131462935864949. ----------
17-03-17 22:17:25.798 -07 000000610 INF: Cycle	61	Tile	9	Exposure Settings		A	448	G	215	T	215	C	448
17-03-17 22:17:25.798 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28542, sync = True, waitForSettling = True)
17-03-17 22:17:25.798 -07 000000610 INF: Z Motor: Moving to -0.130657 mm, started at -0.131463 mm, distance = 0.81 um
17-03-17 22:17:25.798 -07 000000610 INF: FPGA: Xmit ZDACW 28542\n [Z Motor]
17-03-17 22:17:25.808 -07 000000429 INF: FPGA: Recv ZDACW
17-03-17 22:17:25.808 -07 000000610 INF: FPGA: 'ZDACW 28542' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 22:17:25.808 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:17:25.808 -07 000000458 INF: FPGA: Recv ZDACR 28542
17-03-17 22:17:25.818 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:25.818 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:17:25.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:25.968 -07 000000623 INF: FPGA: Recv ZSGSRD 29625
17-03-17 22:17:25.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:25.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:25.978 -07 000000627 INF: FPGA: Recv ZSGSRD 29631
17-03-17 22:17:25.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:25.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:25.988 -07 000000429 INF: FPGA: Recv ZSGSRD 29620
17-03-17 22:17:25.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:25.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:25.998 -07 000000561 INF: FPGA: Recv ZSGSRD 29635
17-03-17 22:17:26.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:26.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:26.008 -07 000000012 INF: FPGA: Recv ZSGSRD 29631
17-03-17 22:17:26.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:26.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:26.018 -07 000000627 INF: FPGA: Recv ZSGSRD 29617
17-03-17 22:17:26.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:26.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:26.028 -07 000000429 INF: FPGA: Recv ZSGSRD 29632
17-03-17 22:17:26.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:26.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:26.038 -07 000000561 INF: FPGA: Recv ZSGSRD 29628
17-03-17 22:17:26.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:26.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:26.048 -07 000000618 INF: FPGA: Recv ZSGSRD 29628
17-03-17 22:17:26.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:26.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:26.058 -07 000000551 INF: FPGA: Recv ZSGSRD 29632
17-03-17 22:17:26.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:26.068 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:17:26.068 -07 000000459 INF: FPGA: Recv ZPIEZORD 25304
17-03-17 22:17:26.078 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:26.078 -07 000000610 INF: Z Motor: Piezo is near 34.1 V (nominally 0 to 100 V), expect near 43.6 V, since DAC is at 4.355 V. Piezo Error = -9.5 V.
17-03-17 22:17:26.078 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.7 um, Read 10 ADC samples: Avg = 29628 (-129.9 uncal um), Error = 0.8 uncal um, Median = 29630 (-129.9 uncal um), StdDev = 6 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 29617 (-129.8 uncal um), Max = 29635 (-129.9 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 11 (0.1 uncal um)
17-03-17 22:17:26.078 -07 000000610 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29628, posNoise = 7, negNoise = 11
17-03-17 22:17:26.078 -07 000000610 INF: Z Motor: After move to -0.130657, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:17:26.078 -07 000000610 INF: Z Motor: MoveAbsStepped took 273 ms)
17-03-17 22:17:26.078 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:17:26.078 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:17:26.078 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:17:26.078 -07 000000448 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:17:26.078 -07 000000486 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:17:26.078 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:17:26.078 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:17:26.078 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:17:26.078 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 22:17:26.078 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:17:26.078 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:17:26.078 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:17:26.088 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:17:26.088 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:17:26.088 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:17:26.088 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:17:26.098 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 22:17:26.098 -07 000000486 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 22:17:26.098 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 22:17:26.098 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 22:17:26.098 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 448 448 215 215 28719 150\n [Camera]
17-03-17 22:17:26.298 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:17:26.748 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 640
17-03-17 22:17:26.748 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 640
17-03-17 22:17:26.748 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:17:26.748 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:17:26.748 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 22:17:26.748 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 640
17-03-17 22:17:26.748 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 640
17-03-17 22:17:26.748 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:17:26.748 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:17:26.748 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 2164362856, 0x0, 418435064) start.
17-03-17 22:17:26.938 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28719 833
17-03-17 22:17:26.958 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:17:26.958 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 60. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=959, R2=982, Total=1941. Warn if over 250 bubbles per interval.
17-03-17 22:17:27.088 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning grn on 983
17-03-17 22:17:27.138 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 385 ms.
17-03-17 22:17:27.138 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 22:17:27.138 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:17:27.138 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 2164362856, 0x0, 418435064) end. Duration was 382 ms.
17-03-17 22:17:27.138 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-17 22:17:27.138 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:17:27.138 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:17:27.138 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 22:17:27.138 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:17:27.148 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 22:17:27.308 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1198
17-03-17 22:17:27.308 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1198
17-03-17 22:17:27.308 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:17:27.308 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:17:27.308 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 2199785120, 0x0, 391868352) start.
17-03-17 22:17:27.308 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1198
17-03-17 22:17:27.308 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1198
17-03-17 22:17:27.308 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:17:27.308 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:17:27.308 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) start.
17-03-17 22:17:27.498 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP 1390
17-03-17 22:17:27.498 -07 000000459 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:17:27.498 -07 000000610 INF: FPGA: 'CAMDBLSNAP 448 448 215 215 28719 150' command took 2 ms to send, 1393 ms to get response, and 1397 ms overall
17-03-17 22:17:27.498 -07 000000610 INF: Skipping AutoFocus in Tile 10: adopting Best-Z from the cache: -0.131379
17-03-17 22:17:27.498 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.13138 mm
17-03-17 22:17:27.498 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:17:27.498 -07 000000569 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-17 22:17:27.498 -07 000000569 INF: Y Motor: Moving to 67.3826 mm, started at 66.5391 mm, delta = 0.8435 mm
17-03-17 22:17:27.498 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:17:27.498 -07 000000618 INF: Z Motor: Entering MoveAbsStepped (DAC = 28700, sync = True, waitForSettling = False)
17-03-17 22:17:27.498 -07 000000618 INF: Z Motor: Moving to -0.131380 mm, started at -0.130660 mm, distance = -0.72 um
17-03-17 22:17:27.508 -07 000000618 INF: FPGA: Xmit ZDACW 28700\n [Z Motor]
17-03-17 22:17:27.508 -07 000000458 INF: FPGA: Recv YRDPOS 136272
17-03-17 22:17:27.508 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 22:17:27.508 -07 000000569 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:17:27.508 -07 000000569 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:17:27.508 -07 000000569 INF: Y Motor: Moving 1350 steps-28
17-03-17 22:17:27.508 -07 000000458 INF: FPGA: Recv ZDACW
17-03-17 22:17:27.518 -07 000000618 INF: FPGA: 'ZDACW 28700' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 22:17:27.518 -07 000000569 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:17:27.528 -07 000000618 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:17:27.528 -07 000000458 INF: FPGA: Recv ZDACR 28700
17-03-17 22:17:27.538 -07 000000618 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:17:27.538 -07 000000618 INF: Z Motor: MoveAbsStepped took 32 ms (did NOT wait for settling yet))
17-03-17 22:17:27.698 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 2199785120, 0x0, 391868352) end. Duration was 390 ms.
17-03-17 22:17:27.698 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 22:17:27.698 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:17:27.698 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:17:27.698 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 22:17:27.698 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) end. Duration was 392 ms.
17-03-17 22:17:27.698 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 22:17:27.698 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:17:27.708 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 22:17:27.718 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-17 22:17:27.888 -07 000000576 INF: FPGA: Recv YMVTILE
17-03-17 22:17:27.888 -07 000000569 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 386 ms overall
17-03-17 22:17:27.928 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:17:27.938 -07 000000429 INF: FPGA: Recv YRDPOS 137978
17-03-17 22:17:27.938 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:17:27.938 -07 000000569 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:17:27.938 -07 000000569 INF: Y Motor: Position error before settling (table move) = -22 encoder counts (-0.011 mm)
17-03-17 22:17:27.938 -07 000000569 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 386 ms, distance = 0.844 mm, average velocity = 2.185 mm/sec
17-03-17 22:17:28.888 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:17:28.888 -07 000000459 INF: FPGA: Recv YRDPOS 137978
17-03-17 22:17:28.898 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:17:28.898 -07 000000569 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:17:28.918 -07 000000569 INF: Y Motor: After move to 67.382607, error = -0.010536, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:17:28.918 -07 000000569 INF: Y Motor: Position error after settling (table move) = -22 encoder counts (-0.011 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:17:28.918 -07 000000569 INF: Y Motor: Moved to 67.3721 after 1417 ms (table move)
17-03-17 22:17:28.918 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.131380 mm (DAC = 28700)
17-03-17 22:17:28.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:28.928 -07 000000623 INF: FPGA: Recv ZSGSRD 29735
17-03-17 22:17:28.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 22:17:28.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:28.928 -07 000000478 INF: FPGA: Recv ZSGSRD 29733
17-03-17 22:17:28.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:28.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:28.938 -07 000000478 INF: FPGA: Recv ZSGSRD 29738
17-03-17 22:17:28.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:28.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:28.948 -07 000000623 INF: FPGA: Recv ZSGSRD 29746
17-03-17 22:17:28.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:28.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:28.958 -07 000000623 INF: FPGA: Recv ZSGSRD 29742
17-03-17 22:17:28.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:28.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:28.968 -07 000000458 INF: FPGA: Recv ZSGSRD 29745
17-03-17 22:17:28.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:28.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:28.978 -07 000000623 INF: FPGA: Recv ZSGSRD 29736
17-03-17 22:17:28.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:28.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:28.998 -07 000000429 INF: FPGA: Recv ZSGSRD 29739
17-03-17 22:17:29.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:17:29.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:29.008 -07 000000429 INF: FPGA: Recv ZSGSRD 29726
17-03-17 22:17:29.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:29.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:29.018 -07 000000429 INF: FPGA: Recv ZSGSRD 29747
17-03-17 22:17:29.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:29.028 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:17:29.028 -07 000000462 INF: FPGA: Recv ZPIEZORD 25462
17-03-17 22:17:29.038 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:29.038 -07 000000610 INF: Z Motor: Piezo is near 34.4 V (nominally 0 to 100 V), expect near 43.8 V, since DAC is at 4.379 V. Piezo Error = -9.4 V.
17-03-17 22:17:29.038 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.4 um, Read 10 ADC samples: Avg = 29739 (-130.6 uncal um), Error = 0.8 uncal um, Median = 29738 (-130.6 uncal um), StdDev = 7 (0.0 uncal um), Range = 21 (0.1 uncal um), Min = 29726 (-130.5 uncal um), Max = 29747 (-130.6 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 13 (0.1 uncal um)
17-03-17 22:17:29.038 -07 000000610 INF: Z Motor: ADC noise = 13, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29739, posNoise = 8, negNoise = 13
17-03-17 22:17:29.038 -07 000000610 INF: Z Motor: After move to -0.131380, error = 0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:17:29.038 -07 000000610 INF: Z Motor: Settle wait time = 1419 ms, measure time = 113 ms (allowed 150 ms), total time = 1532 ms
17-03-17 22:17:29.038 -07 000000610 INF: Z Motor: Waiting extra 37 ms after reading position to reach expected total of 150 ms
17-03-17 22:17:29.078 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1574 ms
17-03-17 22:17:29.078 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:17:29.078 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.3720703125, Z-position -0.131372996894964. ----------
17-03-17 22:17:29.078 -07 000000610 INF: Cycle	61	Tile	10	Exposure Settings		A	448	G	215	T	215	C	448
17-03-17 22:17:29.078 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28523, sync = True, waitForSettling = True)
17-03-17 22:17:29.078 -07 000000610 INF: Z Motor: Moving to -0.130570 mm, started at -0.131373 mm, distance = 0.80 um
17-03-17 22:17:29.078 -07 000000610 INF: FPGA: Xmit ZDACW 28523\n [Z Motor]
17-03-17 22:17:29.078 -07 000000576 INF: FPGA: Recv ZDACW
17-03-17 22:17:29.088 -07 000000610 INF: FPGA: 'ZDACW 28523' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:17:29.088 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:17:29.088 -07 000000561 INF: FPGA: Recv ZDACR 28523
17-03-17 22:17:29.098 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:29.098 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:17:29.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:29.248 -07 000000623 INF: FPGA: Recv ZSGSRD 29618
17-03-17 22:17:29.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:29.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:29.258 -07 000000623 INF: FPGA: Recv ZSGSRD 29621
17-03-17 22:17:29.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:29.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:29.268 -07 000000623 INF: FPGA: Recv ZSGSRD 29616
17-03-17 22:17:29.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:29.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:29.278 -07 000000429 INF: FPGA: Recv ZSGSRD 29616
17-03-17 22:17:29.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:29.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:29.288 -07 000000623 INF: FPGA: Recv ZSGSRD 29616
17-03-17 22:17:29.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:29.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:29.308 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 61, FrontChillerTemperature: 4.016692,
17-03-17 22:17:29.308 -07 000000569 INF: FPGA: Recv ZSGSRD 29615
17-03-17 22:17:29.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:17:29.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:29.338 -07 000000429 INF: FPGA: Recv ZSGSRD 29620
17-03-17 22:17:29.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:17:29.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:29.348 -07 000000478 INF: FPGA: Recv ZSGSRD 29619
17-03-17 22:17:29.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:29.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:29.378 -07 000000618 INF: FPGA: Recv ZSGSRD 29609
17-03-17 22:17:29.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:17:29.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:29.388 -07 000000618 INF: FPGA: Recv ZSGSRD 29615
17-03-17 22:17:29.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:29.398 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:17:29.398 -07 000000618 INF: FPGA: Recv ZPIEZORD 25307
17-03-17 22:17:29.408 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:29.408 -07 000000610 INF: Z Motor: Piezo is near 34.1 V (nominally 0 to 100 V), expect near 43.5 V, since DAC is at 4.352 V. Piezo Error = -9.5 V.
17-03-17 22:17:29.408 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.6 um, Read 10 ADC samples: Avg = 29616 (-129.8 uncal um), Error = 0.8 uncal um, Median = 29616 (-129.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29609 (-129.8 uncal um), Max = 29621 (-129.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 22:17:29.408 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29616, posNoise = 5, negNoise = 7
17-03-17 22:17:29.408 -07 000000610 INF: Z Motor: After move to -0.130570, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:17:29.408 -07 000000610 INF: Z Motor: MoveAbsStepped took 325 ms)
17-03-17 22:17:29.408 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:17:29.408 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:17:29.408 -07 000000429 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:17:29.408 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:17:29.408 -07 000000623 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:17:29.408 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:17:29.408 -07 000000459 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:17:29.408 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:17:29.408 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:17:29.408 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:17:29.408 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:17:29.408 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:17:29.418 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:17:29.418 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:17:29.418 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:17:29.418 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:17:29.428 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 22:17:29.428 -07 000000459 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 22:17:29.428 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 22:17:29.428 -07 000000623 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 22:17:29.438 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 448 448 215 215 28700 150\n [Camera]
17-03-17 22:17:29.628 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:17:30.078 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 640
17-03-17 22:17:30.078 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 640
17-03-17 22:17:30.078 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:17:30.078 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:17:30.078 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-17 22:17:30.088 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 640
17-03-17 22:17:30.088 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 640
17-03-17 22:17:30.088 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:17:30.088 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:17:30.088 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-17 22:17:30.278 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28700 833
17-03-17 22:17:30.418 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning grn on 983
17-03-17 22:17:30.468 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 382 ms.
17-03-17 22:17:30.468 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 22:17:30.468 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:17:30.468 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 382 ms.
17-03-17 22:17:30.468 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-17 22:17:30.468 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:17:30.468 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:17:30.468 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 22:17:30.468 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:17:30.478 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 22:17:30.638 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1198
17-03-17 22:17:30.638 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1198
17-03-17 22:17:30.638 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:17:30.638 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:17:30.638 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) start.
17-03-17 22:17:30.638 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1198
17-03-17 22:17:30.638 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1198
17-03-17 22:17:30.638 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:17:30.638 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:17:30.638 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 22:17:30.828 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP 1391
17-03-17 22:17:30.828 -07 000000623 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:17:30.828 -07 000000610 INF: FPGA: 'CAMDBLSNAP 448 448 215 215 28700 150' command took 2 ms to send, 1387 ms to get response, and 1398 ms overall
17-03-17 22:17:30.828 -07 000000610 INF: Skipping AutoFocus in Tile 11: adopting Best-Z from the cache: -0.130999
17-03-17 22:17:30.838 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.13100 mm
17-03-17 22:17:30.838 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:17:30.838 -07 000000459 INF: Z Motor: Entering MoveAbsStepped (DAC = 28617, sync = True, waitForSettling = False)
17-03-17 22:17:30.838 -07 000000459 INF: Z Motor: Moving to -0.131000 mm, started at -0.130583 mm, distance = -0.42 um
17-03-17 22:17:30.838 -07 000000459 INF: FPGA: Xmit ZDACW 28617\n [Z Motor]
17-03-17 22:17:30.838 -07 000000429 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-17 22:17:30.838 -07 000000429 INF: Y Motor: Moving to 68.2126 mm, started at 67.3721 mm, delta = 0.8405 mm
17-03-17 22:17:30.838 -07 000000561 INF: FPGA: Recv ZDACW
17-03-17 22:17:30.848 -07 000000459 INF: FPGA: 'ZDACW 28617' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:17:30.848 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:17:30.848 -07 000000458 INF: FPGA: Recv YRDPOS 137978
17-03-17 22:17:30.858 -07 000000429 INF: FPGA: 'YRDPOS' command took 1 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 22:17:30.858 -07 000000429 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:17:30.858 -07 000000429 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:17:30.858 -07 000000429 INF: Y Motor: Moving 1345 steps-22
17-03-17 22:17:30.858 -07 000000459 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:17:30.858 -07 000000561 INF: FPGA: Recv ZDACR 28617
17-03-17 22:17:30.868 -07 000000459 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:17:30.868 -07 000000459 INF: Z Motor: MoveAbsStepped took 27 ms (did NOT wait for settling yet))
17-03-17 22:17:30.868 -07 000000429 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:17:31.018 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 22:17:31.018 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 22:17:31.018 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:17:31.028 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) end. Duration was 382 ms.
17-03-17 22:17:31.028 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 22:17:31.028 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:17:31.028 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:17:31.028 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:17:31.028 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 22:17:31.038 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 22:17:31.238 -07 000000623 INF: FPGA: Recv YMVTILE
17-03-17 22:17:31.238 -07 000000429 INF: FPGA: 'YMVTILE 1327' command took 1 ms to send, 369 ms to get response, and 388 ms overall
17-03-17 22:17:31.288 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:17:31.288 -07 000000623 INF: FPGA: Recv YRDPOS 139684
17-03-17 22:17:31.298 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:17:31.298 -07 000000429 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:17:31.298 -07 000000429 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-17 22:17:31.298 -07 000000429 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.841 mm, average velocity = 2.166 mm/sec
17-03-17 22:17:31.958 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:17:31.958 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 60. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=959, R2=982, Total=1941. Warn if over 250 bubbles per interval.
17-03-17 22:17:32.248 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:17:32.248 -07 000000458 INF: FPGA: Recv YRDPOS 139684
17-03-17 22:17:32.258 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:17:32.258 -07 000000429 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:17:32.278 -07 000000429 INF: Y Motor: After move to 68.212608, error = -0.007530, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:17:32.278 -07 000000429 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:17:32.278 -07 000000429 INF: Y Motor: Moved to 68.2051 after 1440 ms (table move)
17-03-17 22:17:32.278 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.131000 mm (DAC = 28617)
17-03-17 22:17:32.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:32.278 -07 000000618 INF: FPGA: Recv ZSGSRD 29682
17-03-17 22:17:32.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:17:32.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:32.288 -07 000000429 INF: FPGA: Recv ZSGSRD 29679
17-03-17 22:17:32.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:32.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:32.298 -07 000000618 INF: FPGA: Recv ZSGSRD 29688
17-03-17 22:17:32.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:32.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:32.308 -07 000000623 INF: FPGA: Recv ZSGSRD 29677
17-03-17 22:17:32.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:32.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:32.318 -07 000000618 INF: FPGA: Recv ZSGSRD 29676
17-03-17 22:17:32.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:32.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:32.328 -07 000000618 INF: FPGA: Recv ZSGSRD 29677
17-03-17 22:17:32.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:32.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:32.338 -07 000000618 INF: FPGA: Recv ZSGSRD 29681
17-03-17 22:17:32.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:32.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:32.348 -07 000000618 INF: FPGA: Recv ZSGSRD 29684
17-03-17 22:17:32.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:32.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:32.358 -07 000000623 INF: FPGA: Recv ZSGSRD 29686
17-03-17 22:17:32.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:32.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:32.368 -07 000000618 INF: FPGA: Recv ZSGSRD 29689
17-03-17 22:17:32.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:32.378 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:17:32.378 -07 000000618 INF: FPGA: Recv ZPIEZORD 25419
17-03-17 22:17:32.388 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:32.388 -07 000000610 INF: Z Motor: Piezo is near 34.3 V (nominally 0 to 100 V), expect near 43.7 V, since DAC is at 4.367 V. Piezo Error = -9.4 V.
17-03-17 22:17:32.388 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.0 um, Read 10 ADC samples: Avg = 29682 (-130.2 uncal um), Error = 0.8 uncal um, Median = 29682 (-130.2 uncal um), StdDev = 5 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29676 (-130.2 uncal um), Max = 29689 (-130.3 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 22:17:32.388 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29682, posNoise = 7, negNoise = 6
17-03-17 22:17:32.388 -07 000000610 INF: Z Motor: After move to -0.131000, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:17:32.388 -07 000000610 INF: Z Motor: Settle wait time = 1443 ms, measure time = 104 ms (allowed 150 ms), total time = 1547 ms
17-03-17 22:17:32.388 -07 000000610 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 22:17:32.438 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1599 ms
17-03-17 22:17:32.438 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:17:32.438 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.205078125, Z-position -0.131006816802884. ----------
17-03-17 22:17:32.438 -07 000000610 INF: Cycle	61	Tile	11	Exposure Settings		A	448	G	215	T	215	C	448
17-03-17 22:17:32.438 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28440, sync = True, waitForSettling = True)
17-03-17 22:17:32.438 -07 000000610 INF: Z Motor: Moving to -0.130190 mm, started at -0.131007 mm, distance = 0.82 um
17-03-17 22:17:32.438 -07 000000610 INF: FPGA: Xmit ZDACW 28440\n [Z Motor]
17-03-17 22:17:32.438 -07 000000458 INF: FPGA: Recv ZDACW
17-03-17 22:17:32.448 -07 000000610 INF: FPGA: 'ZDACW 28440' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:17:32.448 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:17:32.448 -07 000000458 INF: FPGA: Recv ZDACR 28440
17-03-17 22:17:32.458 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:32.458 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:17:32.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:32.608 -07 000000458 INF: FPGA: Recv ZSGSRD 29557
17-03-17 22:17:32.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:17:32.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:32.618 -07 000000576 INF: FPGA: Recv ZSGSRD 29560
17-03-17 22:17:32.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:32.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:32.628 -07 000000458 INF: FPGA: Recv ZSGSRD 29554
17-03-17 22:17:32.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:32.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:32.638 -07 000000458 INF: FPGA: Recv ZSGSRD 29555
17-03-17 22:17:32.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:32.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:32.648 -07 000000458 INF: FPGA: Recv ZSGSRD 29548
17-03-17 22:17:32.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:32.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:32.658 -07 000000458 INF: FPGA: Recv ZSGSRD 29561
17-03-17 22:17:32.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:32.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:32.668 -07 000000458 INF: FPGA: Recv ZSGSRD 29556
17-03-17 22:17:32.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:32.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:32.678 -07 000000458 INF: FPGA: Recv ZSGSRD 29554
17-03-17 22:17:32.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:32.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:32.688 -07 000000576 INF: FPGA: Recv ZSGSRD 29554
17-03-17 22:17:32.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:32.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:32.698 -07 000000576 INF: FPGA: Recv ZSGSRD 29556
17-03-17 22:17:32.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:32.708 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:17:32.708 -07 000000458 INF: FPGA: Recv ZPIEZORD 25224
17-03-17 22:17:32.718 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:32.718 -07 000000610 INF: Z Motor: Piezo is near 33.9 V (nominally 0 to 100 V), expect near 43.4 V, since DAC is at 4.340 V. Piezo Error = -9.5 V.
17-03-17 22:17:32.718 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.2 um, Read 10 ADC samples: Avg = 29556 (-129.4 uncal um), Error = 0.8 uncal um, Median = 29556 (-129.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29548 (-129.4 uncal um), Max = 29561 (-129.5 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 22:17:32.718 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29556, posNoise = 5, negNoise = 8
17-03-17 22:17:32.718 -07 000000610 INF: Z Motor: After move to -0.130190, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:17:32.718 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-17 22:17:32.718 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:17:32.718 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:17:32.718 -07 000000623 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:17:32.718 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:17:32.718 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:17:32.718 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:17:32.718 -07 000000459 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:17:32.718 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:17:32.718 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:17:32.718 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:17:32.718 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:17:32.718 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:17:32.728 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 22:17:32.728 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:17:32.728 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:17:32.728 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:17:32.738 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 22:17:32.738 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 22:17:32.738 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 22:17:32.738 -07 000000459 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 22:17:32.748 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 448 448 215 215 28617 150\n [Camera]
17-03-17 22:17:32.938 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:17:33.388 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 640
17-03-17 22:17:33.388 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 640
17-03-17 22:17:33.388 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:17:33.388 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:17:33.388 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start.
17-03-17 22:17:33.398 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 640
17-03-17 22:17:33.398 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 640
17-03-17 22:17:33.398 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:17:33.398 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:17:33.398 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) start.
17-03-17 22:17:33.588 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28617 833
17-03-17 22:17:33.738 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP turning grn on 983
17-03-17 22:17:33.768 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 378 ms.
17-03-17 22:17:33.768 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-17 22:17:33.768 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:17:33.768 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) end. Duration was 376 ms.
17-03-17 22:17:33.768 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-17 22:17:33.768 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:17:33.778 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 22:17:33.778 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 22:17:33.778 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 22:17:33.788 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 22:17:33.948 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1198
17-03-17 22:17:33.948 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1198
17-03-17 22:17:33.948 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:17:33.948 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1198
17-03-17 22:17:33.948 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1198
17-03-17 22:17:33.958 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:17:33.958 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:17:33.958 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 22:17:33.958 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:17:33.958 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 1406045800, 0x0, 391868352) start.
17-03-17 22:17:34.138 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP 1391
17-03-17 22:17:34.138 -07 000000429 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:17:34.138 -07 000000610 INF: FPGA: 'CAMDBLSNAP 448 448 215 215 28617 150' command took 2 ms to send, 1388 ms to get response, and 1397 ms overall
17-03-17 22:17:34.148 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 22:17:34.148 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.205078125, Z-Position -0.130197366073022. ------
17-03-17 22:17:34.148 -07 000000459 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:17:34.148 -07 000000458 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.13685 mm
17-03-17 22:17:34.148 -07 000000458 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:17:34.148 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:17:34.148 -07 000000462 INF: Z Motor: Entering MoveAbsStepped (DAC = 29895, sync = True, waitForSettling = False)
17-03-17 22:17:34.148 -07 000000462 INF: Z Motor: Moving to -0.136851 mm, started at -0.130197 mm, distance = -6.65 um
17-03-17 22:17:34.148 -07 000000569 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-17 22:17:34.148 -07 000000569 INF: Y Motor: Moving to 69.0426 mm, started at 68.2051 mm, delta = 0.8375 mm
17-03-17 22:17:34.158 -07 000000459 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 22:17:34.158 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:17:34.158 -07 000000561 INF: FPGA: Recv YRDPOS 139684
17-03-17 22:17:34.168 -07 000000462 INF: FPGA: Xmit ZDACW 29895\n [Z Motor]
17-03-17 22:17:34.168 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:17:34.168 -07 000000569 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:17:34.168 -07 000000569 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:17:34.168 -07 000000569 INF: Y Motor: Moving 1340 steps-15
17-03-17 22:17:34.168 -07 000000551 INF: FPGA: Recv ZDACW
17-03-17 22:17:34.178 -07 000000459 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:17:34.178 -07 000000462 INF: FPGA: 'ZDACW 29895' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-17 22:17:34.188 -07 000000569 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:17:34.198 -07 000000462 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:17:34.198 -07 000000576 INF: FPGA: Recv ZDACR 29895
17-03-17 22:17:34.208 -07 000000462 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:17:34.208 -07 000000462 INF: Z Motor: MoveAbsStepped took 51 ms (did NOT wait for settling yet))
17-03-17 22:17:34.328 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 22:17:34.328 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-17 22:17:34.328 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:17:34.338 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:17:34.338 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 1406045800, 0x0, 391868352) end. Duration was 379 ms.
17-03-17 22:17:34.338 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-17 22:17:34.338 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:17:34.338 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:17:34.338 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 22:17:34.348 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 22:17:34.378 -07 000000561 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:17:34.378 -07 000000459 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 198 ms to get response, and 226 ms overall
17-03-17 22:17:34.568 -07 000000576 INF: FPGA: Recv YMVTILE
17-03-17 22:17:34.568 -07 000000569 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 401 ms overall
17-03-17 22:17:34.608 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:17:34.608 -07 000000486 INF: FPGA: Recv YRDPOS 141368
17-03-17 22:17:34.618 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:17:34.618 -07 000000569 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:17:34.618 -07 000000569 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-17 22:17:34.618 -07 000000569 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 401 ms, distance = 0.838 mm, average velocity = 2.089 mm/sec
17-03-17 22:17:34.698 -07 000000459 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 61, FrontChillerTemperature: 4.041198,
17-03-17 22:17:35.568 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:17:35.568 -07 000000459 INF: FPGA: Recv YRDPOS 141368
17-03-17 22:17:35.578 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:17:35.578 -07 000000569 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:17:35.598 -07 000000569 INF: Y Motor: After move to 69.042610, error = -0.015266, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:17:35.598 -07 000000569 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:17:35.598 -07 000000569 INF: Y Motor: Moved to 69.0273 after 1444 ms (table move)
17-03-17 22:17:35.598 -07 000000458 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136851 mm (DAC = 29895)
17-03-17 22:17:35.598 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:35.608 -07 000000462 INF: FPGA: Recv ZSGSRD 30594
17-03-17 22:17:35.608 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 22:17:35.608 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:35.608 -07 000000569 INF: FPGA: Recv ZSGSRD 30599
17-03-17 22:17:35.618 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:17:35.618 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:35.618 -07 000000561 INF: FPGA: Recv ZSGSRD 30589
17-03-17 22:17:35.628 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:35.628 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:35.628 -07 000000459 INF: FPGA: Recv ZSGSRD 30587
17-03-17 22:17:35.638 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:35.638 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:35.638 -07 000000618 INF: FPGA: Recv ZSGSRD 30585
17-03-17 22:17:35.648 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:35.648 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:35.648 -07 000000623 INF: FPGA: Recv ZSGSRD 30600
17-03-17 22:17:35.658 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:35.658 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:35.658 -07 000000569 INF: FPGA: Recv ZSGSRD 30596
17-03-17 22:17:35.668 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:35.668 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:35.668 -07 000000561 INF: FPGA: Recv ZSGSRD 30592
17-03-17 22:17:35.678 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:35.678 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:35.678 -07 000000462 INF: FPGA: Recv ZSGSRD 30596
17-03-17 22:17:35.688 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:35.688 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:35.688 -07 000000486 INF: FPGA: Recv ZSGSRD 30593
17-03-17 22:17:35.698 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:35.698 -07 000000458 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:17:35.698 -07 000000462 INF: FPGA: Recv ZPIEZORD 26588
17-03-17 22:17:35.708 -07 000000458 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:35.708 -07 000000458 INF: Z Motor: Piezo is near 36.8 V (nominally 0 to 100 V), expect near 45.6 V, since DAC is at 4.562 V. Piezo Error = -8.8 V.
17-03-17 22:17:35.708 -07 000000458 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.9 um, Read 10 ADC samples: Avg = 30593 (-136.1 uncal um), Error = 0.8 uncal um, Median = 30594 (-136.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30585 (-136.0 uncal um), Max = 30600 (-136.1 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 22:17:35.708 -07 000000458 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30593, posNoise = 7, negNoise = 8
17-03-17 22:17:35.708 -07 000000458 INF: Z Motor: After move to -0.136851, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:17:35.708 -07 000000458 INF: Z Motor: Settle wait time = 1449 ms, measure time = 103 ms (allowed 150 ms), total time = 1552 ms
17-03-17 22:17:35.708 -07 000000458 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 22:17:35.758 -07 000000458 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1605 ms
17-03-17 22:17:35.758 -07 000000458 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:17:35.758 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:17:35.758 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:17:35.758 -07 000000486 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:17:35.758 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:17:35.758 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:17:35.758 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:17:35.758 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:17:35.758 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:17:35.768 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 22:17:35.768 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:17:35.778 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 22:17:35.778 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-17 22:17:35.778 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:17:35.828 -07 000000576 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:17:36.028 -07 000000576 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:17:36.028 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:17:36.028 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:17:36.028 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591997688, 0x0, 559484976) start.
17-03-17 22:17:36.068 -07 000000618 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:17:36.068 -07 000000486 INF: FPGA: Recv CAMSNAP
17-03-17 22:17:36.068 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 274 ms to get response, and 285 ms overall
17-03-17 22:17:36.158 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591997688, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 22:17:36.158 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:17:36.158 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:17:36.158 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-17 22:17:36.168 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:17:36.168 -07 000000486 INF: Autofocus start
17-03-17 22:17:36.168 -07 000000486 INF: MeasureProfile start
17-03-17 22:17:36.168 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:17:36.178 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 22:17:36.178 -07 000000561 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:17:36.178 -07 000000486 INF: MeasureProfile done
17-03-17 22:17:36.178 -07 000000486 INF: X=44  Z correction [um]=0.1877088
17-03-17 22:17:36.178 -07 000000486 INF: Autofocus finished
17-03-17 22:17:36.378 -07 000000569 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:17:36.378 -07 000000561 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:17:36.378 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02734375, Z-position -0.136859274064028. ----------
17-03-17 22:17:36.378 -07 000000610 INF: Cycle	61	Tile	12	Exposure Settings		A	448	G	215	T	215	C	448
17-03-17 22:17:36.388 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28449, sync = True, waitForSettling = True)
17-03-17 22:17:36.388 -07 000000610 INF: Z Motor: Moving to -0.130231 mm, started at -0.136859 mm, distance = 6.63 um
17-03-17 22:17:36.388 -07 000000610 INF: FPGA: Xmit ZDACW 28449\n [Z Motor]
17-03-17 22:17:36.388 -07 000000459 INF: FPGA: Recv ZDACW
17-03-17 22:17:36.398 -07 000000610 INF: FPGA: 'ZDACW 28449' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:17:36.398 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:17:36.398 -07 000000551 INF: FPGA: Recv ZDACR 28449
17-03-17 22:17:36.408 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:36.408 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:17:36.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:36.558 -07 000000459 INF: FPGA: Recv ZSGSRD 29560
17-03-17 22:17:36.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:17:36.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:36.568 -07 000000576 INF: FPGA: Recv ZSGSRD 29566
17-03-17 22:17:36.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:36.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:36.578 -07 000000458 INF: FPGA: Recv ZSGSRD 29556
17-03-17 22:17:36.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:36.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:36.588 -07 000000458 INF: FPGA: Recv ZSGSRD 29562
17-03-17 22:17:36.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:36.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:36.598 -07 000000458 INF: FPGA: Recv ZSGSRD 29561
17-03-17 22:17:36.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:36.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:36.608 -07 000000458 INF: FPGA: Recv ZSGSRD 29556
17-03-17 22:17:36.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:36.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:36.618 -07 000000459 INF: FPGA: Recv ZSGSRD 29568
17-03-17 22:17:36.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:36.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:36.628 -07 000000551 INF: FPGA: Recv ZSGSRD 29557
17-03-17 22:17:36.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:36.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:36.638 -07 000000459 INF: FPGA: Recv ZSGSRD 29563
17-03-17 22:17:36.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:36.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:36.648 -07 000000462 INF: FPGA: Recv ZSGSRD 29561
17-03-17 22:17:36.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:36.658 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:17:36.658 -07 000000459 INF: FPGA: Recv ZPIEZORD 25259
17-03-17 22:17:36.668 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:36.668 -07 000000610 INF: Z Motor: Piezo is near 34.0 V (nominally 0 to 100 V), expect near 43.4 V, since DAC is at 4.341 V. Piezo Error = -9.5 V.
17-03-17 22:17:36.668 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.2 um, Read 10 ADC samples: Avg = 29561 (-129.5 uncal um), Error = 0.8 uncal um, Median = 29561 (-129.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29556 (-129.4 uncal um), Max = 29568 (-129.5 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 22:17:36.668 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29561, posNoise = 7, negNoise = 5
17-03-17 22:17:36.668 -07 000000610 INF: Z Motor: After move to -0.130231, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:17:36.668 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 22:17:36.668 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:17:36.668 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:17:36.668 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:17:36.668 -07 000000458 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:17:36.668 -07 000000486 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:17:36.668 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:17:36.668 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:17:36.668 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:17:36.668 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 22:17:36.668 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:17:36.668 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:17:36.668 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:17:36.678 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:17:36.678 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:17:36.678 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:17:36.678 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:17:36.688 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 22:17:36.688 -07 000000486 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 22:17:36.688 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 22:17:36.688 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 22:17:36.688 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 448 448 215 215 28625 150\n [Camera]
17-03-17 22:17:36.888 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:17:36.958 -07 000000459 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:17:36.958 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 60. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=959, R2=982, Total=1941. Warn if over 250 bubbles per interval.
17-03-17 22:17:37.338 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 640
17-03-17 22:17:37.338 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 640
17-03-17 22:17:37.338 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:17:37.338 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:17:37.338 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1458343128, 0x0, 391868352) start.
17-03-17 22:17:37.338 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 640
17-03-17 22:17:37.338 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 640
17-03-17 22:17:37.338 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:17:37.338 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:17:37.338 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2164362856, 0x0, 418435064) start.
17-03-17 22:17:37.528 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28625 833
17-03-17 22:17:37.678 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning grn on 983
17-03-17 22:17:37.718 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1458343128, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 22:17:37.718 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 22:17:37.718 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:17:37.718 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2164362856, 0x0, 418435064) end. Duration was 381 ms.
17-03-17 22:17:37.718 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-17 22:17:37.718 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:17:37.718 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:17:37.718 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 22:17:37.838 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 120 ms.
17-03-17 22:17:37.848 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 510 ms.
17-03-17 22:17:37.888 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1199
17-03-17 22:17:37.888 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1199
17-03-17 22:17:37.898 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:17:37.898 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1199
17-03-17 22:17:37.898 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:17:37.898 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1199
17-03-17 22:17:37.898 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 22:17:37.898 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:17:37.898 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:17:37.898 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 1406045800, 0x0, 418435064) start.
17-03-17 22:17:38.078 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP 1391
17-03-17 22:17:38.088 -07 000000551 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:17:38.088 -07 000000610 INF: FPGA: 'CAMDBLSNAP 448 448 215 215 28625 150' command took 2 ms to send, 1390 ms to get response, and 1397 ms overall
17-03-17 22:17:38.088 -07 000000610 INF: Skipping AutoFocus in Tile 13: adopting Best-Z from the cache: -0.130675
17-03-17 22:17:38.088 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.13067 mm
17-03-17 22:17:38.088 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:17:38.088 -07 000000618 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-17 22:17:38.088 -07 000000618 INF: Y Motor: Moving to 69.8726 mm, started at 69.0273 mm, delta = 0.8453 mm
17-03-17 22:17:38.088 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:17:38.088 -07 000000623 INF: Z Motor: Entering MoveAbsStepped (DAC = 28546, sync = True, waitForSettling = False)
17-03-17 22:17:38.088 -07 000000623 INF: Z Motor: Moving to -0.130675 mm, started at -0.130229 mm, distance = -0.45 um
17-03-17 22:17:38.088 -07 000000576 INF: FPGA: Recv YRDPOS 141369
17-03-17 22:17:38.098 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 22:17:38.098 -07 000000618 INF: Y Motor: Encoder = 141369 = motor step 110444.5 = 69.0278 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:17:38.098 -07 000000623 INF: FPGA: Xmit ZDACW 28546\n [Z Motor]
17-03-17 22:17:38.098 -07 000000458 INF: FPGA: Recv ZDACW
17-03-17 22:17:38.098 -07 000000618 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:17:38.098 -07 000000618 INF: Y Motor: Moving 1352 steps-31
17-03-17 22:17:38.108 -07 000000623 INF: FPGA: 'ZDACW 28546' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 22:17:38.108 -07 000000618 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:17:38.118 -07 000000623 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:17:38.118 -07 000000576 INF: FPGA: Recv ZDACR 28546
17-03-17 22:17:38.128 -07 000000623 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:17:38.128 -07 000000623 INF: Z Motor: MoveAbsStepped took 34 ms (did NOT wait for settling yet))
17-03-17 22:17:38.288 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 1406045800, 0x0, 418435064) end. Duration was 393 ms.
17-03-17 22:17:38.288 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 22:17:38.288 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:17:38.288 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 394 ms.
17-03-17 22:17:38.288 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 22:17:38.288 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:17:38.298 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:17:38.298 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:17:38.298 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 22:17:38.298 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-17 22:17:38.478 -07 000000462 INF: FPGA: Recv YMVTILE
17-03-17 22:17:38.478 -07 000000618 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 384 ms overall
17-03-17 22:17:38.518 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:17:38.528 -07 000000569 INF: FPGA: Recv YRDPOS 143080
17-03-17 22:17:38.528 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:17:38.528 -07 000000618 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:17:38.528 -07 000000618 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-17 22:17:38.528 -07 000000618 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 384 ms, distance = 0.845 mm, average velocity = 2.201 mm/sec
17-03-17 22:17:39.478 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:17:39.478 -07 000000561 INF: FPGA: Recv YRDPOS 143080
17-03-17 22:17:39.488 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:39.488 -07 000000618 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:17:39.508 -07 000000618 INF: Y Motor: After move to 69.872612, error = -0.009331, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:17:39.508 -07 000000618 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:17:39.508 -07 000000618 INF: Y Motor: Moved to 69.8633 after 1420 ms (table move)
17-03-17 22:17:39.508 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.130675 mm (DAC = 28546)
17-03-17 22:17:39.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:39.518 -07 000000459 INF: FPGA: Recv ZSGSRD 29638
17-03-17 22:17:39.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 22:17:39.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:39.518 -07 000000462 INF: FPGA: Recv ZSGSRD 29630
17-03-17 22:17:39.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:39.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:39.528 -07 000000462 INF: FPGA: Recv ZSGSRD 29634
17-03-17 22:17:39.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:39.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:39.538 -07 000000462 INF: FPGA: Recv ZSGSRD 29637
17-03-17 22:17:39.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:39.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:39.548 -07 000000462 INF: FPGA: Recv ZSGSRD 29636
17-03-17 22:17:39.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:39.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:39.558 -07 000000462 INF: FPGA: Recv ZSGSRD 29634
17-03-17 22:17:39.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:39.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:39.568 -07 000000462 INF: FPGA: Recv ZSGSRD 29628
17-03-17 22:17:39.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:39.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:39.578 -07 000000569 INF: FPGA: Recv ZSGSRD 29626
17-03-17 22:17:39.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:39.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:39.588 -07 000000569 INF: FPGA: Recv ZSGSRD 29630
17-03-17 22:17:39.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:39.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:39.598 -07 000000623 INF: FPGA: Recv ZSGSRD 29631
17-03-17 22:17:39.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:39.608 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:17:39.608 -07 000000623 INF: FPGA: Recv ZPIEZORD 25389
17-03-17 22:17:39.618 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:39.618 -07 000000610 INF: Z Motor: Piezo is near 34.2 V (nominally 0 to 100 V), expect near 43.6 V, since DAC is at 4.356 V. Piezo Error = -9.3 V.
17-03-17 22:17:39.618 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.7 um, Read 10 ADC samples: Avg = 29632 (-129.9 uncal um), Error = 0.8 uncal um, Median = 29632 (-129.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29626 (-129.9 uncal um), Max = 29638 (-129.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 22:17:39.618 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29632, posNoise = 6, negNoise = 6
17-03-17 22:17:39.618 -07 000000610 INF: Z Motor: After move to -0.130675, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:17:39.618 -07 000000610 INF: Z Motor: Settle wait time = 1421 ms, measure time = 104 ms (allowed 150 ms), total time = 1525 ms
17-03-17 22:17:39.618 -07 000000610 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 22:17:39.668 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1577 ms
17-03-17 22:17:39.668 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:17:39.668 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86328125, Z-position -0.130685606195796. ----------
17-03-17 22:17:39.668 -07 000000610 INF: Cycle	61	Tile	13	Exposure Settings		A	448	G	215	T	215	C	448
17-03-17 22:17:39.668 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28369, sync = True, waitForSettling = True)
17-03-17 22:17:39.668 -07 000000610 INF: Z Motor: Moving to -0.129865 mm, started at -0.130686 mm, distance = 0.82 um
17-03-17 22:17:39.668 -07 000000610 INF: FPGA: Xmit ZDACW 28369\n [Z Motor]
17-03-17 22:17:39.668 -07 000000462 INF: FPGA: Recv ZDACW
17-03-17 22:17:39.678 -07 000000610 INF: FPGA: 'ZDACW 28369' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:17:39.678 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:17:39.678 -07 000000561 INF: FPGA: Recv ZDACR 28369
17-03-17 22:17:39.688 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:39.688 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:17:39.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:39.838 -07 000000561 INF: FPGA: Recv ZSGSRD 29511
17-03-17 22:17:39.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:17:39.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:39.848 -07 000000561 INF: FPGA: Recv ZSGSRD 29505
17-03-17 22:17:39.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:39.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:39.858 -07 000000623 INF: FPGA: Recv ZSGSRD 29509
17-03-17 22:17:39.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:39.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:39.868 -07 000000623 INF: FPGA: Recv ZSGSRD 29507
17-03-17 22:17:39.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:39.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:39.878 -07 000000623 INF: FPGA: Recv ZSGSRD 29507
17-03-17 22:17:39.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:39.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:39.888 -07 000000623 INF: FPGA: Recv ZSGSRD 29504
17-03-17 22:17:39.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:39.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:39.898 -07 000000623 INF: FPGA: Recv ZSGSRD 29503
17-03-17 22:17:39.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:39.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:39.908 -07 000000569 INF: FPGA: Recv ZSGSRD 29507
17-03-17 22:17:39.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:39.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:39.918 -07 000000623 INF: FPGA: Recv ZSGSRD 29505
17-03-17 22:17:39.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:39.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:39.928 -07 000000623 INF: FPGA: Recv ZSGSRD 29506
17-03-17 22:17:39.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:39.938 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:17:39.938 -07 000000623 INF: FPGA: Recv ZPIEZORD 25228
17-03-17 22:17:39.948 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:39.948 -07 000000610 INF: Z Motor: Piezo is near 33.9 V (nominally 0 to 100 V), expect near 43.3 V, since DAC is at 4.329 V. Piezo Error = -9.4 V.
17-03-17 22:17:39.948 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.9 um, Read 10 ADC samples: Avg = 29506 (-129.1 uncal um), Error = 0.8 uncal um, Median = 29506 (-129.1 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29503 (-129.1 uncal um), Max = 29511 (-129.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 22:17:39.948 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29506, posNoise = 5, negNoise = 3
17-03-17 22:17:39.948 -07 000000610 INF: Z Motor: After move to -0.129865, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:17:39.948 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-17 22:17:39.948 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:17:39.948 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:17:39.948 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:17:39.948 -07 000000459 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:17:39.948 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:17:39.948 -07 000000486 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:17:39.948 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 22:17:39.948 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:17:39.948 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:17:39.948 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:17:39.948 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:17:39.948 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:17:39.958 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 22:17:39.958 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:17:39.958 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 22:17:39.958 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:17:39.968 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 12 ms.
17-03-17 22:17:39.968 -07 000000459 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 22:17:39.968 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 12 ms.
17-03-17 22:17:39.968 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms.
17-03-17 22:17:39.968 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 448 448 215 215 28546 150\n [Camera]
17-03-17 22:17:40.058 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 61, FrontChillerTemperature: 4.020806,
17-03-17 22:17:40.168 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:17:40.618 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 640
17-03-17 22:17:40.618 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 640
17-03-17 22:17:40.618 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:17:40.618 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:17:40.618 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 1441468064, 0x0, 391868352) start.
17-03-17 22:17:40.618 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 640
17-03-17 22:17:40.618 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 640
17-03-17 22:17:40.618 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:17:40.618 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:17:40.618 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 1476890328, 0x0, 418435064) start.
17-03-17 22:17:40.808 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28546 833
17-03-17 22:17:40.958 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP turning grn on 983
17-03-17 22:17:40.998 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 1476890328, 0x0, 418435064) end. Duration was 373 ms.
17-03-17 22:17:40.998 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-17 22:17:40.998 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:17:40.998 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 1441468064, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 22:17:40.998 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 22:17:40.998 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:17:40.998 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 22:17:40.998 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 22:17:40.998 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 22:17:41.008 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 22:17:41.178 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1198
17-03-17 22:17:41.178 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1198
17-03-17 22:17:41.178 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:17:41.178 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:17:41.178 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 2199785120, 0x0, 391868352) start.
17-03-17 22:17:41.178 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1198
17-03-17 22:17:41.178 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1198
17-03-17 22:17:41.178 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:17:41.178 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:17:41.178 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) start.
17-03-17 22:17:41.368 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP 1392
17-03-17 22:17:41.368 -07 000000462 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:17:41.368 -07 000000610 INF: FPGA: 'CAMDBLSNAP 448 448 215 215 28546 150' command took 2 ms to send, 1395 ms to get response, and 1399 ms overall
17-03-17 22:17:41.368 -07 000000610 INF: Skipping AutoFocus in Tile 14: adopting Best-Z from the cache: -0.130242
17-03-17 22:17:41.368 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.13024 mm
17-03-17 22:17:41.368 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:17:41.368 -07 000000458 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-17 22:17:41.368 -07 000000458 INF: Y Motor: Moving to 70.7026 mm, started at 69.8633 mm, delta = 0.8393 mm
17-03-17 22:17:41.378 -07 000000569 INF: Z Motor: Entering MoveAbsStepped (DAC = 28451, sync = True, waitForSettling = False)
17-03-17 22:17:41.378 -07 000000458 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:17:41.378 -07 000000569 INF: Z Motor: Moving to -0.130240 mm, started at -0.129876 mm, distance = -0.36 um
17-03-17 22:17:41.378 -07 000000576 INF: FPGA: Recv YRDPOS 143080
17-03-17 22:17:41.388 -07 000000458 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:17:41.388 -07 000000458 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:17:41.388 -07 000000458 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:17:41.388 -07 000000458 INF: Y Motor: Moving 1343 steps-19
17-03-17 22:17:41.388 -07 000000569 INF: FPGA: Xmit ZDACW 28451\n [Z Motor]
17-03-17 22:17:41.388 -07 000000576 INF: FPGA: Recv ZDACW
17-03-17 22:17:41.398 -07 000000569 INF: FPGA: 'ZDACW 28451' command took 1 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:17:41.398 -07 000000569 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:17:41.398 -07 000000561 INF: FPGA: Recv ZDACR 28451
17-03-17 22:17:41.408 -07 000000458 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:17:41.408 -07 000000569 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:41.408 -07 000000569 INF: Z Motor: MoveAbsStepped took 30 ms (did NOT wait for settling yet))
17-03-17 22:17:41.558 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) end. Duration was 377 ms.
17-03-17 22:17:41.558 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-17 22:17:41.558 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:17:41.558 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:17:41.558 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 2199785120, 0x0, 391868352) end. Duration was 385 ms.
17-03-17 22:17:41.558 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 22:17:41.558 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:17:41.568 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:17:41.568 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 22:17:41.568 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 22:17:41.778 -07 000000569 INF: FPGA: Recv YMVTILE
17-03-17 22:17:41.778 -07 000000458 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 22:17:41.818 -07 000000458 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:17:41.828 -07 000000569 INF: FPGA: Recv YRDPOS 144770
17-03-17 22:17:41.828 -07 000000458 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 22:17:41.828 -07 000000458 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:17:41.828 -07 000000458 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-17 22:17:41.828 -07 000000458 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.839 mm, average velocity = 2.109 mm/sec
17-03-17 22:17:41.958 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:17:41.958 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 60. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=959, R2=982, Total=1941. Warn if over 250 bubbles per interval.
17-03-17 22:17:42.778 -07 000000458 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:17:42.778 -07 000000462 INF: FPGA: Recv YRDPOS 144770
17-03-17 22:17:42.788 -07 000000458 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:17:42.788 -07 000000458 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:17:42.808 -07 000000458 INF: Y Motor: After move to 70.702606, error = -0.014130, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:17:42.808 -07 000000458 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:17:42.808 -07 000000458 INF: Y Motor: Moved to 70.6885 after 1435 ms (table move)
17-03-17 22:17:42.808 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.130240 mm (DAC = 28451)
17-03-17 22:17:42.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:42.818 -07 000000459 INF: FPGA: Recv ZSGSRD 29571
17-03-17 22:17:42.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 22:17:42.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:42.818 -07 000000458 INF: FPGA: Recv ZSGSRD 29558
17-03-17 22:17:42.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:42.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:42.828 -07 000000458 INF: FPGA: Recv ZSGSRD 29560
17-03-17 22:17:42.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:42.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:42.838 -07 000000458 INF: FPGA: Recv ZSGSRD 29568
17-03-17 22:17:42.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:42.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:42.848 -07 000000462 INF: FPGA: Recv ZSGSRD 29565
17-03-17 22:17:42.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:42.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:42.858 -07 000000458 INF: FPGA: Recv ZSGSRD 29568
17-03-17 22:17:42.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:42.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:42.868 -07 000000618 INF: FPGA: Recv ZSGSRD 29563
17-03-17 22:17:42.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:42.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:42.878 -07 000000458 INF: FPGA: Recv ZSGSRD 29563
17-03-17 22:17:42.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:42.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:42.888 -07 000000551 INF: FPGA: Recv ZSGSRD 29565
17-03-17 22:17:42.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:42.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:42.898 -07 000000551 INF: FPGA: Recv ZSGSRD 29560
17-03-17 22:17:42.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:42.908 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:17:42.908 -07 000000551 INF: FPGA: Recv ZPIEZORD 25290
17-03-17 22:17:42.918 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:42.918 -07 000000610 INF: Z Motor: Piezo is near 34.0 V (nominally 0 to 100 V), expect near 43.4 V, since DAC is at 4.341 V. Piezo Error = -9.4 V.
17-03-17 22:17:42.918 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.2 um, Read 10 ADC samples: Avg = 29564 (-129.5 uncal um), Error = 0.8 uncal um, Median = 29564 (-129.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29558 (-129.4 uncal um), Max = 29571 (-129.5 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 22:17:42.918 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29564, posNoise = 7, negNoise = 6
17-03-17 22:17:42.918 -07 000000610 INF: Z Motor: After move to -0.130240, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:17:42.918 -07 000000610 INF: Z Motor: Settle wait time = 1437 ms, measure time = 103 ms (allowed 150 ms), total time = 1540 ms
17-03-17 22:17:42.918 -07 000000610 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 22:17:42.968 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1592 ms
17-03-17 22:17:42.968 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:17:42.968 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.6884765625, Z-position -0.130248759770156. ----------
17-03-17 22:17:42.968 -07 000000610 INF: Cycle	61	Tile	14	Exposure Settings		A	448	G	215	T	215	C	448
17-03-17 22:17:42.968 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28275, sync = True, waitForSettling = True)
17-03-17 22:17:42.968 -07 000000610 INF: Z Motor: Moving to -0.129435 mm, started at -0.130249 mm, distance = 0.81 um
17-03-17 22:17:42.968 -07 000000610 INF: FPGA: Xmit ZDACW 28275\n [Z Motor]
17-03-17 22:17:42.968 -07 000000458 INF: FPGA: Recv ZDACW
17-03-17 22:17:42.978 -07 000000610 INF: FPGA: 'ZDACW 28275' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:17:42.978 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:17:42.978 -07 000000623 INF: FPGA: Recv ZDACR 28275
17-03-17 22:17:42.988 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:42.988 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:17:43.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:43.138 -07 000000458 INF: FPGA: Recv ZSGSRD 29437
17-03-17 22:17:43.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:17:43.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:43.148 -07 000000458 INF: FPGA: Recv ZSGSRD 29439
17-03-17 22:17:43.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:43.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:43.158 -07 000000458 INF: FPGA: Recv ZSGSRD 29437
17-03-17 22:17:43.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:43.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:43.168 -07 000000462 INF: FPGA: Recv ZSGSRD 29439
17-03-17 22:17:43.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:43.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:43.178 -07 000000458 INF: FPGA: Recv ZSGSRD 29434
17-03-17 22:17:43.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:43.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:43.188 -07 000000462 INF: FPGA: Recv ZSGSRD 29433
17-03-17 22:17:43.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:43.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:43.198 -07 000000458 INF: FPGA: Recv ZSGSRD 29444
17-03-17 22:17:43.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:43.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:43.208 -07 000000458 INF: FPGA: Recv ZSGSRD 29437
17-03-17 22:17:43.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:43.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:43.218 -07 000000576 INF: FPGA: Recv ZSGSRD 29435
17-03-17 22:17:43.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:43.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:43.228 -07 000000576 INF: FPGA: Recv ZSGSRD 29438
17-03-17 22:17:43.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:43.238 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:17:43.238 -07 000000458 INF: FPGA: Recv ZPIEZORD 25145
17-03-17 22:17:43.248 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:43.248 -07 000000610 INF: Z Motor: Piezo is near 33.7 V (nominally 0 to 100 V), expect near 43.1 V, since DAC is at 4.314 V. Piezo Error = -9.4 V.
17-03-17 22:17:43.248 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.4 um, Read 10 ADC samples: Avg = 29437 (-128.7 uncal um), Error = 0.8 uncal um, Median = 29437 (-128.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29433 (-128.6 uncal um), Max = 29444 (-128.7 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 22:17:43.248 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29437, posNoise = 7, negNoise = 4
17-03-17 22:17:43.248 -07 000000610 INF: Z Motor: After move to -0.129435, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:17:43.248 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-17 22:17:43.248 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:17:43.248 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:17:43.248 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:17:43.248 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:17:43.248 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:17:43.248 -07 000000623 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:17:43.248 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-17 22:17:43.248 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:17:43.248 -07 000000459 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:17:43.248 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:17:43.248 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:17:43.248 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:17:43.258 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:17:43.258 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:17:43.258 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:17:43.258 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:17:43.268 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 22:17:43.268 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 22:17:43.268 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 22:17:43.268 -07 000000459 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 22:17:43.268 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 448 448 215 215 28451 150\n [Camera]
17-03-17 22:17:43.468 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:17:43.918 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 640
17-03-17 22:17:43.918 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 640
17-03-17 22:17:43.918 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:17:43.918 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:17:43.918 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-17 22:17:43.928 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 640
17-03-17 22:17:43.928 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 640
17-03-17 22:17:43.928 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:17:43.928 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:17:43.928 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-17 22:17:44.118 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28451 833
17-03-17 22:17:44.258 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning grn on 983
17-03-17 22:17:44.318 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 397 ms.
17-03-17 22:17:44.318 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 22:17:44.318 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:17:44.318 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 396 ms.
17-03-17 22:17:44.318 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 22:17:44.318 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:17:44.328 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:17:44.328 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 22:17:44.328 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 22:17:44.338 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-17 22:17:44.478 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1198
17-03-17 22:17:44.478 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1198
17-03-17 22:17:44.478 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:17:44.478 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:17:44.478 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) start.
17-03-17 22:17:44.478 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1198
17-03-17 22:17:44.478 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1198
17-03-17 22:17:44.478 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:17:44.618 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:17:44.618 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-17 22:17:44.668 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP 1391
17-03-17 22:17:44.668 -07 000000618 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:17:44.668 -07 000000610 INF: FPGA: 'CAMDBLSNAP 448 448 215 215 28451 150' command took 2 ms to send, 1387 ms to get response, and 1397 ms overall
17-03-17 22:17:44.668 -07 000000610 INF: Skipping AutoFocus in Tile 15: adopting Best-Z from the cache: -0.130170
17-03-17 22:17:44.668 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.13017 mm
17-03-17 22:17:44.678 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:17:44.678 -07 000000561 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-17 22:17:44.678 -07 000000561 INF: Y Motor: Moving to 71.5326 mm, started at 70.6885 mm, delta = 0.8441 mm
17-03-17 22:17:44.678 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:17:44.678 -07 000000569 INF: Z Motor: Entering MoveAbsStepped (DAC = 28436, sync = True, waitForSettling = False)
17-03-17 22:17:44.678 -07 000000569 INF: Z Motor: Moving to -0.130172 mm, started at -0.129433 mm, distance = -0.74 um
17-03-17 22:17:44.678 -07 000000551 INF: FPGA: Recv YRDPOS 144770
17-03-17 22:17:44.688 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:17:44.688 -07 000000561 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:17:44.688 -07 000000561 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:17:44.688 -07 000000561 INF: Y Motor: Moving 1351 steps-29
17-03-17 22:17:44.688 -07 000000569 INF: FPGA: Xmit ZDACW 28436\n [Z Motor]
17-03-17 22:17:44.688 -07 000000551 INF: FPGA: Recv ZDACW
17-03-17 22:17:44.698 -07 000000569 INF: FPGA: 'ZDACW 28436' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 22:17:44.698 -07 000000569 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:17:44.698 -07 000000459 INF: FPGA: Recv ZDACR 28436
17-03-17 22:17:44.708 -07 000000569 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:44.708 -07 000000569 INF: Z Motor: MoveAbsStepped took 27 ms (did NOT wait for settling yet))
17-03-17 22:17:44.708 -07 000000561 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:17:44.868 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) end. Duration was 389 ms.
17-03-17 22:17:44.868 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 22:17:44.868 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:17:44.878 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:17:44.878 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 22:17:44.988 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 372 ms.
17-03-17 22:17:44.988 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-17 22:17:44.988 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:17:44.988 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:17:44.998 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 515 ms.
17-03-17 22:17:45.078 -07 000000486 INF: FPGA: Recv YMVTILE
17-03-17 22:17:45.078 -07 000000561 INF: FPGA: 'YMVTILE 1327' command took 1 ms to send, 369 ms to get response, and 398 ms overall
17-03-17 22:17:45.128 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:17:45.128 -07 000000486 INF: FPGA: Recv YRDPOS 146471
17-03-17 22:17:45.138 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:45.138 -07 000000561 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:17:45.138 -07 000000561 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 22:17:45.138 -07 000000561 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 399 ms, distance = 0.844 mm, average velocity = 2.116 mm/sec
17-03-17 22:17:45.418 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 61, FrontChillerTemperature: 3.988112,
17-03-17 22:17:46.088 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:17:46.088 -07 000000618 INF: FPGA: Recv YRDPOS 146471
17-03-17 22:17:46.098 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:17:46.098 -07 000000561 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:17:46.118 -07 000000561 INF: Y Motor: After move to 71.532608, error = -0.013565, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:17:46.118 -07 000000561 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:17:46.118 -07 000000561 INF: Y Motor: Moved to 71.5190 after 1442 ms (table move)
17-03-17 22:17:46.118 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.130172 mm (DAC = 28436)
17-03-17 22:17:46.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:46.128 -07 000000618 INF: FPGA: Recv ZSGSRD 29557
17-03-17 22:17:46.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:17:46.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:46.128 -07 000000623 INF: FPGA: Recv ZSGSRD 29549
17-03-17 22:17:46.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:17:46.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:46.138 -07 000000618 INF: FPGA: Recv ZSGSRD 29555
17-03-17 22:17:46.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:46.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:46.148 -07 000000623 INF: FPGA: Recv ZSGSRD 29560
17-03-17 22:17:46.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:46.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:46.158 -07 000000618 INF: FPGA: Recv ZSGSRD 29554
17-03-17 22:17:46.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:46.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:46.168 -07 000000618 INF: FPGA: Recv ZSGSRD 29554
17-03-17 22:17:46.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:46.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:46.178 -07 000000618 INF: FPGA: Recv ZSGSRD 29550
17-03-17 22:17:46.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:46.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:46.188 -07 000000618 INF: FPGA: Recv ZSGSRD 29550
17-03-17 22:17:46.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:46.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:46.198 -07 000000618 INF: FPGA: Recv ZSGSRD 29551
17-03-17 22:17:46.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:46.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:46.208 -07 000000618 INF: FPGA: Recv ZSGSRD 29556
17-03-17 22:17:46.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:46.218 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:17:46.218 -07 000000618 INF: FPGA: Recv ZPIEZORD 25302
17-03-17 22:17:46.228 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:46.228 -07 000000610 INF: Z Motor: Piezo is near 34.1 V (nominally 0 to 100 V), expect near 43.4 V, since DAC is at 4.339 V. Piezo Error = -9.3 V.
17-03-17 22:17:46.228 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.2 um, Read 10 ADC samples: Avg = 29554 (-129.4 uncal um), Error = 0.8 uncal um, Median = 29554 (-129.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29549 (-129.4 uncal um), Max = 29560 (-129.4 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 22:17:46.228 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29554, posNoise = 6, negNoise = 5
17-03-17 22:17:46.228 -07 000000610 INF: Z Motor: After move to -0.130172, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:17:46.228 -07 000000610 INF: Z Motor: Settle wait time = 1444 ms, measure time = 103 ms (allowed 150 ms), total time = 1547 ms
17-03-17 22:17:46.228 -07 000000610 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 22:17:46.278 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1600 ms
17-03-17 22:17:46.278 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:17:46.278 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.51904296875, Z-position -0.130184517648738. ----------
17-03-17 22:17:46.278 -07 000000610 INF: Cycle	61	Tile	15	Exposure Settings		A	448	G	215	T	215	C	448
17-03-17 22:17:46.278 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28259, sync = True, waitForSettling = True)
17-03-17 22:17:46.278 -07 000000610 INF: Z Motor: Moving to -0.129361 mm, started at -0.130185 mm, distance = 0.82 um
17-03-17 22:17:46.278 -07 000000610 INF: FPGA: Xmit ZDACW 28259\n [Z Motor]
17-03-17 22:17:46.278 -07 000000486 INF: FPGA: Recv ZDACW
17-03-17 22:17:46.288 -07 000000610 INF: FPGA: 'ZDACW 28259' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:17:46.288 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:17:46.288 -07 000000486 INF: FPGA: Recv ZDACR 28259
17-03-17 22:17:46.298 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:46.298 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:17:46.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:46.448 -07 000000459 INF: FPGA: Recv ZSGSRD 29431
17-03-17 22:17:46.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:17:46.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:46.458 -07 000000459 INF: FPGA: Recv ZSGSRD 29429
17-03-17 22:17:46.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:46.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:46.468 -07 000000459 INF: FPGA: Recv ZSGSRD 29422
17-03-17 22:17:46.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:46.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:46.478 -07 000000551 INF: FPGA: Recv ZSGSRD 29427
17-03-17 22:17:46.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:46.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:46.488 -07 000000459 INF: FPGA: Recv ZSGSRD 29429
17-03-17 22:17:46.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:46.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:46.498 -07 000000458 INF: FPGA: Recv ZSGSRD 29424
17-03-17 22:17:46.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:46.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:46.508 -07 000000458 INF: FPGA: Recv ZSGSRD 29426
17-03-17 22:17:46.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:46.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:46.518 -07 000000458 INF: FPGA: Recv ZSGSRD 29431
17-03-17 22:17:46.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:46.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:46.528 -07 000000459 INF: FPGA: Recv ZSGSRD 29425
17-03-17 22:17:46.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:46.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:46.538 -07 000000459 INF: FPGA: Recv ZSGSRD 29432
17-03-17 22:17:46.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:46.548 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:17:46.548 -07 000000459 INF: FPGA: Recv ZPIEZORD 25126
17-03-17 22:17:46.558 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:46.558 -07 000000610 INF: Z Motor: Piezo is near 33.7 V (nominally 0 to 100 V), expect near 43.1 V, since DAC is at 4.312 V. Piezo Error = -9.4 V.
17-03-17 22:17:46.558 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.4 um, Read 10 ADC samples: Avg = 29428 (-128.6 uncal um), Error = 0.8 uncal um, Median = 29428 (-128.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29422 (-128.6 uncal um), Max = 29432 (-128.6 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 22:17:46.558 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29428, posNoise = 4, negNoise = 6
17-03-17 22:17:46.558 -07 000000610 INF: Z Motor: After move to -0.129361, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:17:46.558 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-17 22:17:46.558 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:17:46.558 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:17:46.558 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:17:46.558 -07 000000486 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:17:46.558 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:17:46.558 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:17:46.558 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:17:46.558 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:17:46.558 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:17:46.558 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 22:17:46.558 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:17:46.558 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:17:46.568 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:17:46.568 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:17:46.568 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 22:17:46.568 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:17:46.578 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 22:17:46.578 -07 000000486 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 23 ms.
17-03-17 22:17:46.578 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 22:17:46.578 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 23 ms.
17-03-17 22:17:46.578 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 448 448 215 215 28436 150\n [Camera]
17-03-17 22:17:46.778 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:17:46.958 -07 000000458 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:17:46.958 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 60. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=959, R2=982, Total=1941. Warn if over 250 bubbles per interval.
17-03-17 22:17:47.228 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 640
17-03-17 22:17:47.228 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 640
17-03-17 22:17:47.228 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:17:47.238 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 640
17-03-17 22:17:47.238 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 640
17-03-17 22:17:47.238 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:17:47.238 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:17:47.238 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 22:17:47.238 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:17:47.238 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start.
17-03-17 22:17:47.428 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28436 833
17-03-17 22:17:47.568 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning grn on 983
17-03-17 22:17:47.618 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 22:17:47.618 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 22:17:47.618 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:17:47.618 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 379 ms.
17-03-17 22:17:47.618 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 22:17:47.618 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:17:47.618 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:17:47.628 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:17:47.628 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 22:17:47.628 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 22:17:47.788 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1198
17-03-17 22:17:47.788 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1198
17-03-17 22:17:47.788 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:17:47.788 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:17:47.788 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 1406045800, 0x0, 391868352) start.
17-03-17 22:17:47.798 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1198
17-03-17 22:17:47.798 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1198
17-03-17 22:17:47.798 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:17:47.798 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:17:47.798 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) start.
17-03-17 22:17:47.978 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP 1391
17-03-17 22:17:47.978 -07 000000576 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:17:47.978 -07 000000610 INF: FPGA: 'CAMDBLSNAP 448 448 215 215 28436 150' command took 2 ms to send, 1387 ms to get response, and 1397 ms overall
17-03-17 22:17:47.978 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 22:17:47.988 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.51904296875, Z-Position -0.129375066918876. ------
17-03-17 22:17:47.988 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:17:47.988 -07 000000462 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.13574 mm
17-03-17 22:17:47.988 -07 000000462 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:17:47.988 -07 000000618 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-17 22:17:47.988 -07 000000618 INF: Y Motor: Moving to 72.3626 mm, started at 71.5190 mm, delta = 0.8436 mm
17-03-17 22:17:47.988 -07 000000623 INF: Z Motor: Entering MoveAbsStepped (DAC = 29652, sync = True, waitForSettling = False)
17-03-17 22:17:47.988 -07 000000623 INF: Z Motor: Moving to -0.135738 mm, started at -0.129375 mm, distance = -6.36 um
17-03-17 22:17:47.988 -07 000000459 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:17:47.998 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:17:47.998 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:17:48.128 -07 000000576 INF: FPGA: Recv YRDPOS 146471
17-03-17 22:17:48.138 -07 000000618 INF: FPGA: 'YRDPOS' command took 134 ms to send, 0 ms to get response, and 142 ms overall
17-03-17 22:17:48.138 -07 000000618 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:17:48.138 -07 000000618 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:17:48.138 -07 000000623 INF: FPGA: Xmit ZDACW 29652\n [Z Motor]
17-03-17 22:17:48.138 -07 000000618 INF: Y Motor: Moving 1350 steps-28
17-03-17 22:17:48.138 -07 000000576 INF: FPGA: Recv ZDACW
17-03-17 22:17:48.148 -07 000000569 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:17:48.148 -07 000000623 INF: FPGA: 'ZDACW 29652' command took 0 ms to send, 0 ms to get response, and 152 ms overall
17-03-17 22:17:48.158 -07 000000618 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:17:48.168 -07 000000623 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:17:48.168 -07 000000551 INF: FPGA: Recv ZDACR 29652
17-03-17 22:17:48.178 -07 000000623 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:17:48.178 -07 000000623 INF: Z Motor: MoveAbsStepped took 182 ms (did NOT wait for settling yet))
17-03-17 22:17:48.178 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 1406045800, 0x0, 391868352) end. Duration was 390 ms.
17-03-17 22:17:48.178 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 22:17:48.178 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:17:48.178 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) end. Duration was 386 ms.
17-03-17 22:17:48.178 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 22:17:48.178 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:17:48.188 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:17:48.188 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 22:17:48.188 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:17:48.198 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 22:17:48.348 -07 000000486 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:17:48.348 -07 000000569 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 217 ms overall
17-03-17 22:17:48.528 -07 000000551 INF: FPGA: Recv YMVTILE
17-03-17 22:17:48.528 -07 000000618 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 22:17:48.568 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:17:48.578 -07 000000458 INF: FPGA: Recv YRDPOS 148172
17-03-17 22:17:48.578 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 22:17:48.578 -07 000000618 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:17:48.578 -07 000000618 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-17 22:17:48.578 -07 000000618 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.844 mm, average velocity = 2.125 mm/sec
17-03-17 22:17:49.528 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:17:49.528 -07 000000459 INF: FPGA: Recv YRDPOS 148172
17-03-17 22:17:49.538 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:49.538 -07 000000618 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:17:49.558 -07 000000618 INF: Y Motor: After move to 72.362610, error = -0.013000, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:17:49.558 -07 000000618 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:17:49.558 -07 000000618 INF: Y Motor: Moved to 72.3496 after 1567 ms (table move)
17-03-17 22:17:49.558 -07 000000462 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135738 mm (DAC = 29652)
17-03-17 22:17:49.558 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:49.568 -07 000000551 INF: FPGA: Recv ZSGSRD 30423
17-03-17 22:17:49.568 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 22:17:49.568 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:49.568 -07 000000561 INF: FPGA: Recv ZSGSRD 30419
17-03-17 22:17:49.578 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:17:49.578 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:49.578 -07 000000623 INF: FPGA: Recv ZSGSRD 30419
17-03-17 22:17:49.588 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:49.588 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:49.588 -07 000000618 INF: FPGA: Recv ZSGSRD 30419
17-03-17 22:17:49.598 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:49.598 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:49.598 -07 000000486 INF: FPGA: Recv ZSGSRD 30426
17-03-17 22:17:49.608 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:49.608 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:49.608 -07 000000551 INF: FPGA: Recv ZSGSRD 30420
17-03-17 22:17:49.618 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:49.618 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:49.618 -07 000000561 INF: FPGA: Recv ZSGSRD 30423
17-03-17 22:17:49.628 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:17:49.628 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:49.628 -07 000000458 INF: FPGA: Recv ZSGSRD 30420
17-03-17 22:17:49.638 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:49.638 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:49.638 -07 000000551 INF: FPGA: Recv ZSGSRD 30420
17-03-17 22:17:49.648 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:49.648 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:49.648 -07 000000561 INF: FPGA: Recv ZSGSRD 30418
17-03-17 22:17:49.658 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:49.658 -07 000000462 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:17:49.658 -07 000000459 INF: FPGA: Recv ZPIEZORD 26431
17-03-17 22:17:49.668 -07 000000462 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:49.668 -07 000000462 INF: Z Motor: Piezo is near 36.5 V (nominally 0 to 100 V), expect near 45.2 V, since DAC is at 4.525 V. Piezo Error = -8.8 V.
17-03-17 22:17:49.668 -07 000000462 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.7 um, Read 10 ADC samples: Avg = 30421 (-135.0 uncal um), Error = 0.8 uncal um, Median = 30420 (-135.0 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 30418 (-134.9 uncal um), Max = 30426 (-135.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 22:17:49.668 -07 000000462 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30421, posNoise = 5, negNoise = 3
17-03-17 22:17:49.668 -07 000000462 INF: Z Motor: After move to -0.135738, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:17:49.668 -07 000000462 INF: Z Motor: Settle wait time = 1570 ms, measure time = 103 ms (allowed 150 ms), total time = 1673 ms
17-03-17 22:17:49.668 -07 000000462 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 22:17:49.718 -07 000000462 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1726 ms
17-03-17 22:17:49.718 -07 000000462 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:17:49.718 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:17:49.718 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:17:49.718 -07 000000486 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:17:49.718 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:17:49.718 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:17:49.718 -07 000000623 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:17:49.718 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:17:49.718 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:17:49.728 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:17:49.728 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:17:49.738 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 22:17:49.738 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 22:17:49.738 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:17:49.778 -07 000000618 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:17:49.978 -07 000000462 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:17:49.978 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:17:49.988 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:17:49.988 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591997688, 0x0, 559484976) start.
17-03-17 22:17:50.018 -07 000000561 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:17:50.018 -07 000000462 INF: FPGA: Recv CAMSNAP
17-03-17 22:17:50.018 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 284 ms overall
17-03-17 22:17:50.108 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591997688, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 22:17:50.108 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:17:50.108 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:17:50.108 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 22:17:50.218 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:17:50.218 -07 000000576 INF: Autofocus start
17-03-17 22:17:50.218 -07 000000576 INF: MeasureProfile start
17-03-17 22:17:50.218 -07 000000551 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:17:50.228 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:17:50.228 -07 000000569 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:17:50.228 -07 000000576 INF: MeasureProfile done
17-03-17 22:17:50.228 -07 000000576 INF: X=0  Z correction [um]=-0.02394831
17-03-17 22:17:50.228 -07 000000576 INF: Autofocus finished
17-03-17 22:17:50.428 -07 000000551 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:17:50.428 -07 000000569 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:17:50.428 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.349609375, Z-position -0.135754309575645. ----------
17-03-17 22:17:50.428 -07 000000610 INF: Cycle	61	Tile	16	Exposure Settings		A	448	G	215	T	215	C	448
17-03-17 22:17:50.428 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28159, sync = True, waitForSettling = True)
17-03-17 22:17:50.438 -07 000000610 INF: Z Motor: Moving to -0.128904 mm, started at -0.135754 mm, distance = 6.85 um
17-03-17 22:17:50.438 -07 000000610 INF: FPGA: Xmit ZDACW 28159\n [Z Motor]
17-03-17 22:17:50.438 -07 000000618 INF: FPGA: Recv ZDACW
17-03-17 22:17:50.448 -07 000000610 INF: FPGA: 'ZDACW 28159' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:50.448 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:17:50.448 -07 000000618 INF: FPGA: Recv ZDACR 28159
17-03-17 22:17:50.458 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:50.458 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:17:50.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:50.608 -07 000000618 INF: FPGA: Recv ZSGSRD 29354
17-03-17 22:17:50.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:50.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:50.618 -07 000000458 INF: FPGA: Recv ZSGSRD 29356
17-03-17 22:17:50.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:50.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:50.628 -07 000000551 INF: FPGA: Recv ZSGSRD 29355
17-03-17 22:17:50.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:50.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:50.638 -07 000000618 INF: FPGA: Recv ZSGSRD 29355
17-03-17 22:17:50.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:50.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:50.648 -07 000000623 INF: FPGA: Recv ZSGSRD 29359
17-03-17 22:17:50.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:50.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:50.658 -07 000000551 INF: FPGA: Recv ZSGSRD 29356
17-03-17 22:17:50.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:50.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:50.668 -07 000000623 INF: FPGA: Recv ZSGSRD 29362
17-03-17 22:17:50.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:50.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:50.678 -07 000000618 INF: FPGA: Recv ZSGSRD 29361
17-03-17 22:17:50.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:50.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:50.688 -07 000000623 INF: FPGA: Recv ZSGSRD 29357
17-03-17 22:17:50.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:50.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:50.698 -07 000000551 INF: FPGA: Recv ZSGSRD 29356
17-03-17 22:17:50.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:50.708 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:17:50.708 -07 000000618 INF: FPGA: Recv ZPIEZORD 25057
17-03-17 22:17:50.718 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:50.718 -07 000000610 INF: Z Motor: Piezo is near 33.5 V (nominally 0 to 100 V), expect near 43.0 V, since DAC is at 4.297 V. Piezo Error = -9.4 V.
17-03-17 22:17:50.718 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.9 um, Read 10 ADC samples: Avg = 29357 (-128.1 uncal um), Error = 0.8 uncal um, Median = 29356 (-128.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29354 (-128.1 uncal um), Max = 29362 (-128.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 22:17:50.718 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29357, posNoise = 5, negNoise = 3
17-03-17 22:17:50.718 -07 000000610 INF: Z Motor: After move to -0.128904, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:17:50.718 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 22:17:50.718 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:17:50.718 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:17:50.718 -07 000000429 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:17:50.718 -07 000000459 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:17:50.718 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:17:50.718 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:17:50.718 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:17:50.718 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:17:50.718 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 22:17:50.718 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:17:50.718 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 3 ms.
17-03-17 22:17:50.718 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:17:50.728 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:17:50.728 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:17:50.728 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 7 ms.
17-03-17 22:17:50.728 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:17:50.748 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 22:17:50.748 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 25 ms.
17-03-17 22:17:50.748 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-17 22:17:50.748 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 26 ms.
17-03-17 22:17:50.748 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 448 448 215 215 28336 150\n [Camera]
17-03-17 22:17:50.778 -07 000000623 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 61, FrontChillerTemperature: 4.005817,
17-03-17 22:17:50.948 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:17:51.398 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 640
17-03-17 22:17:51.398 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 640
17-03-17 22:17:51.398 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:17:51.398 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:17:51.398 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 22:17:51.398 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 640
17-03-17 22:17:51.398 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 640
17-03-17 22:17:51.398 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:17:51.398 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:17:51.398 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1476890328, 0x0, 418435064) start.
17-03-17 22:17:51.588 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28336 833
17-03-17 22:17:51.738 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning grn on 983
17-03-17 22:17:51.778 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1476890328, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 22:17:51.778 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 22:17:51.778 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:17:51.778 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 383 ms.
17-03-17 22:17:51.778 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 22:17:51.778 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:17:51.788 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:17:51.788 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:17:51.788 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 22:17:51.788 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 22:17:51.958 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1198
17-03-17 22:17:51.958 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1198
17-03-17 22:17:51.958 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:17:51.958 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:17:51.958 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 2164362856, 0x0, 391868352) start.
17-03-17 22:17:51.958 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1198
17-03-17 22:17:51.958 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1198
17-03-17 22:17:51.958 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:17:51.958 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:17:51.958 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 2199785120, 0x0, 418435064) start.
17-03-17 22:17:51.958 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:17:51.958 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 60. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=959, R2=982, Total=1941. Warn if over 250 bubbles per interval.
17-03-17 22:17:52.148 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP 1391
17-03-17 22:17:52.148 -07 000000462 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:17:52.148 -07 000000610 INF: FPGA: 'CAMDBLSNAP 448 448 215 215 28336 150' command took 2 ms to send, 1392 ms to get response, and 1398 ms overall
17-03-17 22:17:52.148 -07 000000610 INF: Skipping AutoFocus in Tile 17: adopting Best-Z from the cache: -0.129451
17-03-17 22:17:52.148 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.12945 mm
17-03-17 22:17:52.148 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:17:52.148 -07 000000569 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-17 22:17:52.148 -07 000000623 INF: Z Motor: Entering MoveAbsStepped (DAC = 28279, sync = True, waitForSettling = False)
17-03-17 22:17:52.148 -07 000000623 INF: Z Motor: Moving to -0.129453 mm, started at -0.128919 mm, distance = -0.53 um
17-03-17 22:17:52.148 -07 000000623 INF: FPGA: Xmit ZDACW 28279\n [Z Motor]
17-03-17 22:17:52.148 -07 000000569 INF: Y Motor: Moving to 73.1926 mm, started at 72.3496 mm, delta = 0.8430 mm
17-03-17 22:17:52.148 -07 000000462 INF: FPGA: Recv ZDACW
17-03-17 22:17:52.158 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:17:52.158 -07 000000623 INF: FPGA: 'ZDACW 28279' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 22:17:52.158 -07 000000618 INF: FPGA: Recv YRDPOS 148173
17-03-17 22:17:52.168 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 22:17:52.168 -07 000000623 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:17:52.168 -07 000000569 INF: Y Motor: Encoder = 148173 = motor step 115760.2 = 72.3501 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:17:52.168 -07 000000576 INF: FPGA: Recv ZDACR 28279
17-03-17 22:17:52.168 -07 000000569 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:17:52.168 -07 000000569 INF: Y Motor: Moving 1348 steps-27
17-03-17 22:17:52.178 -07 000000623 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:17:52.178 -07 000000623 INF: Z Motor: MoveAbsStepped took 23 ms (did NOT wait for settling yet))
17-03-17 22:17:52.178 -07 000000569 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:17:52.348 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 2164362856, 0x0, 391868352) end. Duration was 389 ms.
17-03-17 22:17:52.348 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 22:17:52.348 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:17:52.348 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 2199785120, 0x0, 418435064) end. Duration was 388 ms.
17-03-17 22:17:52.348 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 22:17:52.348 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:17:52.348 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:17:52.348 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 22:17:52.348 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 22:17:52.358 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 22:17:52.548 -07 000000551 INF: FPGA: Recv YMVTILE
17-03-17 22:17:52.548 -07 000000569 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 381 ms overall
17-03-17 22:17:52.588 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:17:52.598 -07 000000458 INF: FPGA: Recv YRDPOS 149865
17-03-17 22:17:52.598 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 22:17:52.598 -07 000000569 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:17:52.598 -07 000000569 INF: Y Motor: Position error before settling (table move) = -33 encoder counts (-0.016 mm)
17-03-17 22:17:52.598 -07 000000569 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 381 ms, distance = 0.843 mm, average velocity = 2.213 mm/sec
17-03-17 22:17:53.548 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:17:53.548 -07 000000478 INF: FPGA: Recv YRDPOS 149865
17-03-17 22:17:53.558 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:53.558 -07 000000569 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:17:53.578 -07 000000569 INF: Y Motor: After move to 73.192604, error = -0.016335, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:17:53.578 -07 000000569 INF: Y Motor: Position error after settling (table move) = -33 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:17:53.578 -07 000000569 INF: Y Motor: Moved to 73.1763 after 1428 ms (table move)
17-03-17 22:17:53.578 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.129453 mm (DAC = 28279)
17-03-17 22:17:53.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:53.588 -07 000000576 INF: FPGA: Recv ZSGSRD 29445
17-03-17 22:17:53.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 22:17:53.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:53.588 -07 000000478 INF: FPGA: Recv ZSGSRD 29443
17-03-17 22:17:53.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:17:53.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:53.598 -07 000000618 INF: FPGA: Recv ZSGSRD 29440
17-03-17 22:17:53.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:53.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:53.608 -07 000000459 INF: FPGA: Recv ZSGSRD 29439
17-03-17 22:17:53.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:53.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:53.618 -07 000000576 INF: FPGA: Recv ZSGSRD 29446
17-03-17 22:17:53.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:53.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:53.628 -07 000000459 INF: FPGA: Recv ZSGSRD 29441
17-03-17 22:17:53.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:53.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:53.638 -07 000000618 INF: FPGA: Recv ZSGSRD 29440
17-03-17 22:17:53.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:53.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:53.648 -07 000000478 INF: FPGA: Recv ZSGSRD 29439
17-03-17 22:17:53.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:53.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:53.658 -07 000000618 INF: FPGA: Recv ZSGSRD 29431
17-03-17 22:17:53.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:53.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:53.668 -07 000000576 INF: FPGA: Recv ZSGSRD 29441
17-03-17 22:17:53.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:53.678 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:17:53.678 -07 000000478 INF: FPGA: Recv ZPIEZORD 25197
17-03-17 22:17:53.688 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:53.688 -07 000000610 INF: Z Motor: Piezo is near 33.8 V (nominally 0 to 100 V), expect near 43.2 V, since DAC is at 4.315 V. Piezo Error = -9.3 V.
17-03-17 22:17:53.688 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.5 um, Read 10 ADC samples: Avg = 29440 (-128.7 uncal um), Error = 0.8 uncal um, Median = 29440 (-128.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 29431 (-128.6 uncal um), Max = 29446 (-128.7 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 22:17:53.688 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29440, posNoise = 6, negNoise = 9
17-03-17 22:17:53.688 -07 000000610 INF: Z Motor: After move to -0.129453, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:17:53.688 -07 000000610 INF: Z Motor: Settle wait time = 1430 ms, measure time = 103 ms (allowed 150 ms), total time = 1533 ms
17-03-17 22:17:53.688 -07 000000610 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 22:17:53.738 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1585 ms
17-03-17 22:17:53.738 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:17:53.738 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.17626953125, Z-position -0.129452157464578. ----------
17-03-17 22:17:53.738 -07 000000610 INF: Cycle	61	Tile	17	Exposure Settings		A	448	G	215	T	215	C	448
17-03-17 22:17:53.738 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28102, sync = True, waitForSettling = True)
17-03-17 22:17:53.738 -07 000000610 INF: Z Motor: Moving to -0.128643 mm, started at -0.129452 mm, distance = 0.81 um
17-03-17 22:17:53.738 -07 000000610 INF: FPGA: Xmit ZDACW 28102\n [Z Motor]
17-03-17 22:17:53.738 -07 000000478 INF: FPGA: Recv ZDACW
17-03-17 22:17:53.748 -07 000000610 INF: FPGA: 'ZDACW 28102' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:17:53.748 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:17:53.748 -07 000000569 INF: FPGA: Recv ZDACR 28102
17-03-17 22:17:53.758 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:53.758 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:17:53.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:53.908 -07 000000478 INF: FPGA: Recv ZSGSRD 29314
17-03-17 22:17:53.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:53.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:53.918 -07 000000576 INF: FPGA: Recv ZSGSRD 29314
17-03-17 22:17:53.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:53.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:53.928 -07 000000618 INF: FPGA: Recv ZSGSRD 29316
17-03-17 22:17:53.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:53.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:53.938 -07 000000576 INF: FPGA: Recv ZSGSRD 29310
17-03-17 22:17:53.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:53.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:53.948 -07 000000618 INF: FPGA: Recv ZSGSRD 29319
17-03-17 22:17:53.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:53.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:53.958 -07 000000569 INF: FPGA: Recv ZSGSRD 29314
17-03-17 22:17:53.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:53.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:53.968 -07 000000618 INF: FPGA: Recv ZSGSRD 29314
17-03-17 22:17:53.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:53.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:53.978 -07 000000618 INF: FPGA: Recv ZSGSRD 29313
17-03-17 22:17:53.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:53.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:53.988 -07 000000576 INF: FPGA: Recv ZSGSRD 29312
17-03-17 22:17:53.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:53.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:53.998 -07 000000618 INF: FPGA: Recv ZSGSRD 29319
17-03-17 22:17:54.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:54.008 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:17:54.008 -07 000000576 INF: FPGA: Recv ZPIEZORD 25011
17-03-17 22:17:54.018 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:54.018 -07 000000610 INF: Z Motor: Piezo is near 33.4 V (nominally 0 to 100 V), expect near 42.9 V, since DAC is at 4.288 V. Piezo Error = -9.5 V.
17-03-17 22:17:54.018 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.6 um, Read 10 ADC samples: Avg = 29314 (-127.9 uncal um), Error = 0.8 uncal um, Median = 29314 (-127.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29310 (-127.8 uncal um), Max = 29319 (-127.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 22:17:54.018 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29314, posNoise = 5, negNoise = 4
17-03-17 22:17:54.018 -07 000000610 INF: Z Motor: After move to -0.128643, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:17:54.018 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-17 22:17:54.018 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:17:54.018 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:17:54.018 -07 000000486 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:17:54.018 -07 000000459 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:17:54.018 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:17:54.018 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:17:54.018 -07 000000458 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:17:54.018 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:17:54.018 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:17:54.018 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:17:54.018 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:17:54.018 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:17:54.028 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:17:54.028 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:17:54.028 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:17:54.028 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:17:54.038 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 22:17:54.038 -07 000000458 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 22:17:54.038 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 22:17:54.038 -07 000000459 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 22:17:54.038 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 448 448 215 215 28279 150\n [Camera]
17-03-17 22:17:54.238 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:17:54.688 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 640
17-03-17 22:17:54.688 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 640
17-03-17 22:17:54.688 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:17:54.688 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:17:54.688 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 2235207384, 0x0, 391868352) start.
17-03-17 22:17:54.688 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 640
17-03-17 22:17:54.688 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 640
17-03-17 22:17:54.688 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:17:54.688 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:17:54.688 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-17 22:17:54.878 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28279 833
17-03-17 22:17:55.028 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning grn on 983
17-03-17 22:17:55.058 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 372 ms.
17-03-17 22:17:55.058 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-17 22:17:55.058 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:17:55.068 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 2235207384, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 22:17:55.068 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-17 22:17:55.068 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:17:55.068 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 22:17:55.068 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:17:55.068 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 22:17:55.078 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 22:17:55.238 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1198
17-03-17 22:17:55.248 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1198
17-03-17 22:17:55.248 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:17:55.248 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:17:55.248 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start.
17-03-17 22:17:55.248 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1198
17-03-17 22:17:55.248 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1198
17-03-17 22:17:55.248 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:17:55.248 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:17:55.248 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) start.
17-03-17 22:17:55.438 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP 1390
17-03-17 22:17:55.438 -07 000000551 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:17:55.438 -07 000000610 INF: FPGA: 'CAMDBLSNAP 448 448 215 215 28279 150' command took 2 ms to send, 1392 ms to get response, and 1398 ms overall
17-03-17 22:17:55.438 -07 000000610 INF: Skipping AutoFocus in Tile 18: adopting Best-Z from the cache: -0.128955
17-03-17 22:17:55.438 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.12895 mm
17-03-17 22:17:55.438 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:17:55.438 -07 000000576 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-17 22:17:55.438 -07 000000576 INF: Y Motor: Moving to 74.0226 mm, started at 73.1763 mm, delta = 0.8463 mm
17-03-17 22:17:55.438 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:17:55.438 -07 000000459 INF: Z Motor: Entering MoveAbsStepped (DAC = 28170, sync = True, waitForSettling = False)
17-03-17 22:17:55.438 -07 000000459 INF: Z Motor: Moving to -0.128954 mm, started at -0.128643 mm, distance = -0.31 um
17-03-17 22:17:55.438 -07 000000486 INF: FPGA: Recv YRDPOS 149865
17-03-17 22:17:55.448 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:17:55.448 -07 000000576 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:17:55.448 -07 000000576 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:17:55.448 -07 000000576 INF: Y Motor: Moving 1354 steps-33
17-03-17 22:17:55.448 -07 000000459 INF: FPGA: Xmit ZDACW 28170\n [Z Motor]
17-03-17 22:17:55.448 -07 000000486 INF: FPGA: Recv ZDACW
17-03-17 22:17:55.458 -07 000000459 INF: FPGA: 'ZDACW 28170' command took 1 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 22:17:55.458 -07 000000459 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:17:55.458 -07 000000569 INF: FPGA: Recv ZDACR 28170
17-03-17 22:17:55.468 -07 000000459 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:55.468 -07 000000459 INF: Z Motor: MoveAbsStepped took 23 ms (did NOT wait for settling yet))
17-03-17 22:17:55.468 -07 000000576 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:17:55.648 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 401 ms.
17-03-17 22:17:55.648 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 22:17:55.648 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:17:55.648 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) end. Duration was 399 ms.
17-03-17 22:17:55.648 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 22:17:55.648 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:17:55.648 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:17:55.648 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-17 22:17:55.648 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:17:55.658 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-17 22:17:55.838 -07 000000478 INF: FPGA: Recv YMVTILE
17-03-17 22:17:55.838 -07 000000576 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 22:17:55.878 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:17:55.878 -07 000000458 INF: FPGA: Recv YRDPOS 151569
17-03-17 22:17:55.888 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:55.888 -07 000000576 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:17:55.888 -07 000000576 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-17 22:17:55.888 -07 000000576 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.846 mm, average velocity = 2.126 mm/sec
17-03-17 22:17:56.138 -07 000000478 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 61, FrontChillerTemperature: 3.99219,
17-03-17 22:17:56.838 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:17:56.838 -07 000000486 INF: FPGA: Recv YRDPOS 151569
17-03-17 22:17:56.848 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:17:56.848 -07 000000576 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:17:56.858 -07 000000576 INF: Y Motor: After move to 74.022606, error = -0.014305, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:17:56.858 -07 000000576 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:17:56.858 -07 000000576 INF: Y Motor: Moved to 74.0083 after 1421 ms (table move)
17-03-17 22:17:56.868 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.128954 mm (DAC = 28170)
17-03-17 22:17:56.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:56.868 -07 000000623 INF: FPGA: Recv ZSGSRD 29360
17-03-17 22:17:56.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:56.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:56.878 -07 000000623 INF: FPGA: Recv ZSGSRD 29363
17-03-17 22:17:56.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:56.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:56.888 -07 000000623 INF: FPGA: Recv ZSGSRD 29360
17-03-17 22:17:56.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:56.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:56.898 -07 000000623 INF: FPGA: Recv ZSGSRD 29370
17-03-17 22:17:56.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:56.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:56.908 -07 000000623 INF: FPGA: Recv ZSGSRD 29361
17-03-17 22:17:56.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:56.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:56.918 -07 000000569 INF: FPGA: Recv ZSGSRD 29364
17-03-17 22:17:56.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:56.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:56.928 -07 000000551 INF: FPGA: Recv ZSGSRD 29361
17-03-17 22:17:56.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:56.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:56.938 -07 000000569 INF: FPGA: Recv ZSGSRD 29362
17-03-17 22:17:56.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:56.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:56.948 -07 000000551 INF: FPGA: Recv ZSGSRD 29364
17-03-17 22:17:56.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:56.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:56.958 -07 000000551 INF: FPGA: Recv ZSGSRD 29360
17-03-17 22:17:56.958 -07 000000486 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:17:56.958 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 60. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=959, R2=982, Total=1941. Warn if over 250 bubbles per interval.
17-03-17 22:17:56.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:56.968 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:17:56.968 -07 000000459 INF: FPGA: Recv ZPIEZORD 25069
17-03-17 22:17:56.978 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:56.978 -07 000000610 INF: Z Motor: Piezo is near 33.6 V (nominally 0 to 100 V), expect near 43.0 V, since DAC is at 4.298 V. Piezo Error = -9.4 V.
17-03-17 22:17:56.978 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.0 um, Read 10 ADC samples: Avg = 29362 (-128.2 uncal um), Error = 0.8 uncal um, Median = 29362 (-128.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29360 (-128.2 uncal um), Max = 29370 (-128.2 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 2 (0.0 uncal um)
17-03-17 22:17:56.978 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29362, posNoise = 8, negNoise = 2
17-03-17 22:17:56.978 -07 000000610 INF: Z Motor: After move to -0.128954, error = 0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:17:56.978 -07 000000610 INF: Z Motor: Settle wait time = 1423 ms, measure time = 110 ms (allowed 150 ms), total time = 1533 ms
17-03-17 22:17:56.978 -07 000000610 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-17 22:17:57.018 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1575 ms
17-03-17 22:17:57.018 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:17:57.018 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.00830078125, Z-position -0.12895106891752. ----------
17-03-17 22:17:57.018 -07 000000610 INF: Cycle	61	Tile	18	Exposure Settings		A	448	G	215	T	215	C	448
17-03-17 22:17:57.018 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27993, sync = True, waitForSettling = True)
17-03-17 22:17:57.018 -07 000000610 INF: Z Motor: Moving to -0.128144 mm, started at -0.128951 mm, distance = 0.81 um
17-03-17 22:17:57.018 -07 000000610 INF: FPGA: Xmit ZDACW 27993\n [Z Motor]
17-03-17 22:17:57.018 -07 000000618 INF: FPGA: Recv ZDACW
17-03-17 22:17:57.028 -07 000000610 INF: FPGA: 'ZDACW 27993' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 22:17:57.028 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:17:57.028 -07 000000618 INF: FPGA: Recv ZDACR 27993
17-03-17 22:17:57.038 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:57.038 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:17:57.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:57.188 -07 000000618 INF: FPGA: Recv ZSGSRD 29237
17-03-17 22:17:57.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:17:57.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:57.198 -07 000000458 INF: FPGA: Recv ZSGSRD 29238
17-03-17 22:17:57.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:57.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:57.208 -07 000000618 INF: FPGA: Recv ZSGSRD 29239
17-03-17 22:17:57.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:57.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:57.218 -07 000000458 INF: FPGA: Recv ZSGSRD 29242
17-03-17 22:17:57.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:57.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:57.228 -07 000000618 INF: FPGA: Recv ZSGSRD 29241
17-03-17 22:17:57.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:57.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:57.238 -07 000000458 INF: FPGA: Recv ZSGSRD 29239
17-03-17 22:17:57.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:57.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:57.248 -07 000000618 INF: FPGA: Recv ZSGSRD 29236
17-03-17 22:17:57.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:57.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:57.258 -07 000000458 INF: FPGA: Recv ZSGSRD 29241
17-03-17 22:17:57.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 4 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:57.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:57.268 -07 000000618 INF: FPGA: Recv ZSGSRD 29241
17-03-17 22:17:57.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:57.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:17:57.278 -07 000000458 INF: FPGA: Recv ZSGSRD 29231
17-03-17 22:17:57.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:57.288 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:17:57.288 -07 000000618 INF: FPGA: Recv ZPIEZORD 24920
17-03-17 22:17:57.298 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:17:57.298 -07 000000610 INF: Z Motor: Piezo is near 33.2 V (nominally 0 to 100 V), expect near 42.7 V, since DAC is at 4.271 V. Piezo Error = -9.5 V.
17-03-17 22:17:57.298 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.1 um, Read 10 ADC samples: Avg = 29238 (-127.4 uncal um), Error = 0.8 uncal um, Median = 29239 (-127.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29231 (-127.3 uncal um), Max = 29242 (-127.4 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 22:17:57.298 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29238, posNoise = 4, negNoise = 7
17-03-17 22:17:57.298 -07 000000610 INF: Z Motor: After move to -0.128144, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:17:57.298 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-17 22:17:57.298 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:17:57.298 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:17:57.298 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:17:57.298 -07 000000551 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:17:57.298 -07 000000486 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:17:57.298 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:17:57.298 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:17:57.298 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:17:57.298 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:17:57.298 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:17:57.298 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:17:57.298 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:17:57.308 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:17:57.308 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:17:57.308 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:17:57.308 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:17:57.318 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 22:17:57.318 -07 000000486 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 22:17:57.318 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 22:17:57.318 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 22:17:57.318 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 448 448 215 215 28170 150\n [Camera]
17-03-17 22:17:57.518 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:17:57.978 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 643
17-03-17 22:17:57.978 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 643
17-03-17 22:17:57.978 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:17:57.978 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:17:57.978 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-17 22:17:57.978 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 643
17-03-17 22:17:57.978 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 643
17-03-17 22:17:57.978 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:17:57.978 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:17:57.978 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-17 22:17:58.168 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28170 833
17-03-17 22:17:58.308 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP turning grn on 983
17-03-17 22:17:58.348 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 22:17:58.358 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-17 22:17:58.358 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:17:58.358 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 22:17:58.358 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 22:17:58.358 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:17:58.358 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:17:58.358 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 22:17:58.358 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:17:58.368 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 22:17:58.528 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1198
17-03-17 22:17:58.528 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1198
17-03-17 22:17:58.528 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:17:58.528 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:17:58.528 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) start.
17-03-17 22:17:58.528 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1198
17-03-17 22:17:58.528 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1198
17-03-17 22:17:58.538 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:17:58.538 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:17:58.538 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-17 22:17:58.718 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP 1390
17-03-17 22:17:58.718 -07 000000561 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:17:58.718 -07 000000610 INF: FPGA: 'CAMDBLSNAP 448 448 215 215 28170 150' command took 2 ms to send, 1386 ms to get response, and 1397 ms overall
17-03-17 22:17:58.718 -07 000000610 INF: Skipping AutoFocus in Tile 19: adopting Best-Z from the cache: -0.128608
17-03-17 22:17:58.718 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.12861 mm
17-03-17 22:17:58.718 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:17:58.728 -07 000000478 INF: Z Motor: Entering MoveAbsStepped (DAC = 28094, sync = True, waitForSettling = False)
17-03-17 22:17:58.728 -07 000000478 INF: Z Motor: Moving to -0.128606 mm, started at -0.128154 mm, distance = -0.45 um
17-03-17 22:17:58.728 -07 000000478 INF: FPGA: Xmit ZDACW 28094\n [Z Motor]
17-03-17 22:17:58.728 -07 000000569 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-17 22:17:58.728 -07 000000569 INF: Y Motor: Moving to 74.8526 mm, started at 74.0083 mm, delta = 0.8443 mm
17-03-17 22:17:58.728 -07 000000576 INF: FPGA: Recv ZDACW
17-03-17 22:17:58.738 -07 000000478 INF: FPGA: 'ZDACW 28094' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 22:17:58.738 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:17:58.738 -07 000000486 INF: FPGA: Recv YRDPOS 151569
17-03-17 22:17:58.748 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 22:17:58.748 -07 000000569 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:17:58.748 -07 000000569 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:17:58.748 -07 000000569 INF: Y Motor: Moving 1351 steps-29
17-03-17 22:17:58.748 -07 000000478 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:17:58.748 -07 000000551 INF: FPGA: Recv ZDACR 28094
17-03-17 22:17:58.758 -07 000000478 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:17:58.758 -07 000000478 INF: Z Motor: MoveAbsStepped took 25 ms (did NOT wait for settling yet))
17-03-17 22:17:58.758 -07 000000569 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:17:58.918 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) end. Duration was 386 ms.
17-03-17 22:17:58.918 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 22:17:58.918 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:17:58.918 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 383 ms.
17-03-17 22:17:58.918 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-17 22:17:58.918 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:17:58.918 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:17:58.918 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 22:17:58.928 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:17:58.928 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 22:17:59.128 -07 000000486 INF: FPGA: Recv YMVTILE
17-03-17 22:17:59.128 -07 000000569 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 388 ms overall
17-03-17 22:17:59.158 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:17:59.158 -07 000000458 INF: FPGA: Recv YRDPOS 153256
17-03-17 22:17:59.168 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 22:17:59.168 -07 000000569 INF: Y Motor: Encoder = 153256 = motor step 119731.3 = 74.8320 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:17:59.168 -07 000000569 INF: Y Motor: Position error before settling (table move) = -42 encoder counts (-0.021 mm)
17-03-17 22:17:59.168 -07 000000569 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.844 mm, average velocity = 2.176 mm/sec
17-03-17 22:18:00.118 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:18:00.118 -07 000000478 INF: FPGA: Recv YRDPOS 153257
17-03-17 22:18:00.128 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:18:00.128 -07 000000569 INF: Y Motor: Encoder = 153257 = motor step 119732.0 = 74.8325 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:18:00.138 -07 000000569 INF: Y Motor: After move to 74.852608, error = -0.020088, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:18:00.138 -07 000000569 INF: Y Motor: Position error after settling (table move) = -41 encoder counts (-0.020 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 22:18:00.138 -07 000000569 INF: Y Motor: Moved to 74.8325 after 1411 ms (table move)
17-03-17 22:18:00.138 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.128606 mm (DAC = 28094)
17-03-17 22:18:00.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:18:00.148 -07 000000569 INF: FPGA: Recv ZSGSRD 29299
17-03-17 22:18:00.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-17 22:18:00.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:18:00.148 -07 000000561 INF: FPGA: Recv ZSGSRD 29311
17-03-17 22:18:00.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:18:00.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:18:00.158 -07 000000561 INF: FPGA: Recv ZSGSRD 29300
17-03-17 22:18:00.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:18:00.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:18:00.168 -07 000000561 INF: FPGA: Recv ZSGSRD 29305
17-03-17 22:18:00.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:18:00.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:18:00.178 -07 000000561 INF: FPGA: Recv ZSGSRD 29311
17-03-17 22:18:00.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:18:00.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:18:00.188 -07 000000576 INF: FPGA: Recv ZSGSRD 29303
17-03-17 22:18:00.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:18:00.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:18:00.198 -07 000000486 INF: FPGA: Recv ZSGSRD 29309
17-03-17 22:18:00.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:18:00.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:18:00.208 -07 000000486 INF: FPGA: Recv ZSGSRD 29314
17-03-17 22:18:00.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:18:00.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:18:00.218 -07 000000486 INF: FPGA: Recv ZSGSRD 29307
17-03-17 22:18:00.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:18:00.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:18:00.228 -07 000000576 INF: FPGA: Recv ZSGSRD 29304
17-03-17 22:18:00.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:18:00.238 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:18:00.238 -07 000000561 INF: FPGA: Recv ZPIEZORD 25030
17-03-17 22:18:00.248 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:18:00.248 -07 000000610 INF: Z Motor: Piezo is near 33.5 V (nominally 0 to 100 V), expect near 42.9 V, since DAC is at 4.287 V. Piezo Error = -9.4 V.
17-03-17 22:18:00.248 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.6 um, Read 10 ADC samples: Avg = 29306 (-127.8 uncal um), Error = 0.8 uncal um, Median = 29306 (-127.8 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 29299 (-127.8 uncal um), Max = 29314 (-127.9 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 22:18:00.248 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29306, posNoise = 8, negNoise = 7
17-03-17 22:18:00.248 -07 000000610 INF: Z Motor: After move to -0.128606, error = 0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:18:00.248 -07 000000610 INF: Z Motor: Settle wait time = 1414 ms, measure time = 102 ms (allowed 150 ms), total time = 1516 ms
17-03-17 22:18:00.248 -07 000000610 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 22:18:00.298 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1570 ms
17-03-17 22:18:00.298 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:18:00.298 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83251953125, Z-position -0.128591313037582. ----------
17-03-17 22:18:00.298 -07 000000610 INF: Cycle	61	Tile	19	Exposure Settings		A	448	G	215	T	215	C	448
17-03-17 22:18:00.298 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27918, sync = True, waitForSettling = True)
17-03-17 22:18:00.298 -07 000000610 INF: Z Motor: Moving to -0.127800 mm, started at -0.128591 mm, distance = 0.79 um
17-03-17 22:18:00.298 -07 000000610 INF: FPGA: Xmit ZDACW 27918\n [Z Motor]
17-03-17 22:18:00.298 -07 000000569 INF: FPGA: Recv ZDACW
17-03-17 22:18:00.308 -07 000000610 INF: FPGA: 'ZDACW 27918' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 22:18:00.308 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:18:00.308 -07 000000569 INF: FPGA: Recv ZDACR 27918
17-03-17 22:18:00.318 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:18:00.318 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:18:00.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:18:00.468 -07 000000623 INF: FPGA: Recv ZSGSRD 29181
17-03-17 22:18:00.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:18:00.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:18:00.478 -07 000000569 INF: FPGA: Recv ZSGSRD 29179
17-03-17 22:18:00.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:18:00.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:18:00.488 -07 000000569 INF: FPGA: Recv ZSGSRD 29188
17-03-17 22:18:00.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:18:00.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:18:00.498 -07 000000569 INF: FPGA: Recv ZSGSRD 29180
17-03-17 22:18:00.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:18:00.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:18:00.508 -07 000000623 INF: FPGA: Recv ZSGSRD 29192
17-03-17 22:18:00.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:18:00.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:18:00.518 -07 000000569 INF: FPGA: Recv ZSGSRD 29191
17-03-17 22:18:00.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:18:00.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:18:00.528 -07 000000569 INF: FPGA: Recv ZSGSRD 29179
17-03-17 22:18:00.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:18:00.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:18:00.538 -07 000000551 INF: FPGA: Recv ZSGSRD 29186
17-03-17 22:18:00.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:18:00.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:18:00.548 -07 000000551 INF: FPGA: Recv ZSGSRD 29180
17-03-17 22:18:00.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:18:00.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:18:00.558 -07 000000551 INF: FPGA: Recv ZSGSRD 29181
17-03-17 22:18:00.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:18:00.568 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:18:00.568 -07 000000458 INF: FPGA: Recv ZPIEZORD 24886
17-03-17 22:18:00.578 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:18:00.578 -07 000000610 INF: Z Motor: Piezo is near 33.2 V (nominally 0 to 100 V), expect near 42.6 V, since DAC is at 4.260 V. Piezo Error = -9.4 V.
17-03-17 22:18:00.578 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.8 um, Read 10 ADC samples: Avg = 29184 (-127.0 uncal um), Error = 0.8 uncal um, Median = 29181 (-127.0 uncal um), StdDev = 5 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29179 (-127.0 uncal um), Max = 29192 (-127.1 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 22:18:00.578 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29184, posNoise = 8, negNoise = 5
17-03-17 22:18:00.578 -07 000000610 INF: Z Motor: After move to -0.127800, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:18:00.578 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 22:18:00.578 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:18:00.578 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:18:00.578 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:18:00.578 -07 000000551 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:18:00.578 -07 000000478 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:18:00.578 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:18:00.578 -07 000000623 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:18:00.578 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:18:00.578 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:18:00.578 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:18:00.578 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:18:00.578 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:18:00.578 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 22:18:00.578 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:18:00.588 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:18:00.588 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:18:00.598 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 22:18:00.598 -07 000000478 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 22:18:00.598 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 22:18:00.598 -07 000000623 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 22:18:00.598 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 448 448 215 215 28094 150\n [Camera]
17-03-17 22:18:00.798 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:18:01.248 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 640
17-03-17 22:18:01.248 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 640
17-03-17 22:18:01.248 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:18:01.248 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:18:01.248 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) start.
17-03-17 22:18:01.258 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 640
17-03-17 22:18:01.258 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 640
17-03-17 22:18:01.258 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:18:01.388 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:18:01.388 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 22:18:01.448 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28094 833
17-03-17 22:18:01.498 -07 000000623 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 61, FrontChillerTemperature: 3.99219,
17-03-17 22:18:01.598 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP turning grn on 983
17-03-17 22:18:01.638 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) end. Duration was 389 ms.
17-03-17 22:18:01.638 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 22:18:01.638 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:18:01.648 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:18:01.648 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 22:18:01.758 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 368 ms.
17-03-17 22:18:01.758 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 369 ms.
17-03-17 22:18:01.758 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:18:01.758 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 22:18:01.768 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 514 ms.
17-03-17 22:18:01.808 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1198
17-03-17 22:18:01.808 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1198
17-03-17 22:18:01.808 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:18:01.808 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1198
17-03-17 22:18:01.808 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1198
17-03-17 22:18:01.808 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:18:01.808 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:18:01.808 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1406045800, 0x0, 418435064) start.
17-03-17 22:18:01.818 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:18:01.818 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-17 22:18:01.958 -07 000000478 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:18:01.958 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 60. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=959, R2=982, Total=1941. Warn if over 250 bubbles per interval.
17-03-17 22:18:01.998 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP 1391
17-03-17 22:18:01.998 -07 000000576 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:18:01.998 -07 000000610 INF: FPGA: 'CAMDBLSNAP 448 448 215 215 28094 150' command took 4 ms to send, 1387 ms to get response, and 1399 ms overall
17-03-17 22:18:02.188 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1406045800, 0x0, 418435064) end. Duration was 377 ms.
17-03-17 22:18:02.188 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-17 22:18:02.188 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:18:02.188 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 375 ms.
17-03-17 22:18:02.188 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 375 ms.
17-03-17 22:18:02.198 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:18:02.198 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:18:02.198 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:18:02.198 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 22:18:02.198 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-17 22:18:02.208 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 22:18:02.238 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 42 ms.
17-03-17 22:18:02.238 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-17 22:18:02.278 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 41 ms.
17-03-17 22:18:02.298 -07 000000610 INF: Enabling Skipping AutoFocus in the next 0 cycles.
17-03-17 22:18:02.298 -07 000000610 INF: Imaging Cycle 61: ScanTilesCommand Cycle 61 time end. Duration was 149862 ms.
17-03-17 22:18:02.298 -07 000000610 INF: =================== Cycle #61 ===================
17-03-17 22:18:02.298 -07 000000610 INF: ===================  ===================
17-03-17 22:18:02.298 -07 000000459 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-17 22:18:02.298 -07 000000623 INF: FPGA: Recv EXLED1ADCR 30
17-03-17 22:18:02.308 -07 000000459 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 22:18:02.308 -07 000000459 INF: GreenLED: Using Green data: Photodiode ADC 30 --> 0.0 mW (old method), or 2.3 mW (new method). Difference = 2.3 mW
17-03-17 22:18:02.308 -07 000000459 INF: Predictive Diagnostic Log Cycle Entry Metrics: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 61, FrontChillerTemperature: 3.99219, FrontChillerHeatSinkTemperature: 0.350898, AmbientTemperature: 18.97934, FlowCellCompartmentTemperature: 21.99255, FlowCellTargetTemperature: 22, FlowCellHeatSinkTemperature: 18.80959, GreenLEDSensorTemperature: 25.42111, PhotodiodePowerAdcGreen: 30, PhotodiodePowerMwGreen: 2.291791
17-03-17 22:18:02.368 -07 000000610 INF: Y-Drift Offset assigned 0.002126916.