17-03-17 22:18:02.418 -07 000000610 INF: =================== Cycle #62 ===================
17-03-17 22:18:02.428 -07 000000610 INF: Y Motor: Entering MoveAbsStepped (target = 120609 steps, sync = True, waitForSettling = True)
17-03-17 22:18:02.428 -07 000000610 INF: Y Motor: Moving to 75.3806 mm, started at 74.8325 mm, delta = 0.5481 mm
17-03-17 22:18:02.428 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:18:02.428 -07 000000478 INF: FPGA: Recv YRDPOS 153257
17-03-17 22:18:02.438 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:18:02.438 -07 000000610 INF: Y Motor: Encoder = 153257 = motor step 119732.0 = 74.8325 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:18:02.438 -07 000000610 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = 0.5280 mm (844.8 steps). UsingTableMove = False
17-03-17 22:18:02.438 -07 000000610 INF: Y Motor: Moving to 154379 encoder counts
17-03-17 22:18:02.438 -07 000000610 INF: FPGA: Xmit YMVTO 154379\n [Y Motor]
17-03-17 22:18:02.548 -07 000000576 INF: FPGA: Recv YMVTO 154377 871
17-03-17 22:18:02.548 -07 000000610 INF: FPGA: 'YMVTO 154379' command took 0 ms to send, 107 ms to get response, and 116 ms overall
17-03-17 22:18:02.548 -07 000000610 INF: Y Motor: Position error before settling = -2 encoder counts (-0.001 mm)
17-03-17 22:18:02.548 -07 000000610 INF: Y Motor: To move from 74.833 to 75.381 (0.548 mm) should take 877 steps, but required 871 steps (0.544 mm). Slippage = -0.004 mm (-0.01%).
17-03-17 22:18:02.548 -07 000000610 INF: Y Motor: FPGA move command 'YMVTO 154379' took 116 ms, distance = 0.548 mm, average velocity = 4.725 mm/sec
17-03-17 22:18:05.548 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:18:05.548 -07 000000486 INF: FPGA: Recv YRDPOS 154379
17-03-17 22:18:05.558 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:18:05.558 -07 000000610 INF: Y Motor: Encoder = 154379 = motor step 120608.6 = 75.3804 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:18:05.568 -07 000000610 INF: Y Motor: After move to 75.380580, error = -0.000209, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:18:05.568 -07 000000610 INF: Y Motor: Position error after settling = 0 encoder counts (0.000 mm), Delta during settling = 2 counts (0.001 mm)
17-03-17 22:18:05.568 -07 000000610 INF: Y Motor: Moved to 75.3804 after 3148 ms
17-03-17 22:18:05.578 -07 000000610 INF: =================== Cycle #62, Flow Cell Temp 60° ===================
17-03-17 22:18:05.578 -07 000000610 INF: =================== Cycle #62, Flow Cell Temp 60°, FC temperature to 60° ===================
17-03-17 22:18:05.578 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 60000000\n [FlowCellTempControl]
17-03-17 22:18:05.578 -07 000000462 INF: FPGA: Recv TEC2TEMP 
17-03-17 22:18:05.588 -07 000000610 INF: FPGA: 'TEC2TEMP 0 60000000' command took 1 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:18:05.588 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 22:18:05.588 -07 000000462 INF: FPGA: Recv TEC2EN 
17-03-17 22:18:05.598 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:18:05.598 -07 000000610 INF: =================== Cycle #62, Flow Cell Temp 60° ===================
17-03-17 22:18:05.598 -07 000000610 INF: =================== Cycle #62 ===================
17-03-17 22:18:05.598 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 22:18:05.598 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 22:18:05.628 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-17 22:18:05.628 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 24 to 3. Moving 3 positions.
17-03-17 22:18:05.628 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 22:18:05.928 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 22:18:05.948 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-17 22:18:05.948 -07 000000610 INF: ReagentValve: Move+ from 24 to 3 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-17 22:18:05.998 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 22:18:06.018 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 22:18:06.018 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 22:18:06.118 -07 000000610 INF: =================== Cycle #62, Pumping Reagent PR2 (3) ===================
17-03-17 22:18:06.118 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-17 22:18:06.118 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:18:06.148 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 22:18:06.148 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 22:18:06.148 -07 000000610 INF: =================== Cycle #62, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 22:18:06.278 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-17 22:18:06.318 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:18:06.858 -07 000000459 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 62, FrontChillerTemperature: 3.964938,
17-03-17 22:18:06.958 -07 000000458 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:18:06.958 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 61. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=959, R2=982, Total=1941. Warn if over 250 bubbles per interval.
17-03-17 22:18:09.448 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:18:09.478 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:18:09.898 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:18:09.928 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:18:10.348 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:18:10.378 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:18:10.378 -07 000000610 INF: LanePump: Waited 4060 ms for pump motion to complete
17-03-17 22:18:10.378 -07 000000610 INF: =================== Cycle #62, Pumping Reagent PR2 (3) ===================
17-03-17 22:18:10.508 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:18:10.538 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 22:18:10.538 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 22:18:10.668 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:18:10.698 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 22:18:10.698 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 22:18:10.698 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 22:18:10.828 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 22:18:10.858 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:18:11.288 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:18:11.318 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:18:11.318 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 22:18:11.318 -07 000000610 INF: =================== Cycle #62 ===================
17-03-17 22:18:11.958 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 2
17-03-17 22:18:11.958 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 61. Bubbles during last 5000 ms interval: R1=2, R2=1, Total=3. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=961, R2=983, Total=1944. Warn if over 250 bubbles per interval.
17-03-17 22:18:12.218 -07 000000623 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 62, FrontChillerTemperature: 3.98264,
17-03-17 22:18:12.538 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 22:18:12.538 -07 000000610 INF: ReagentValve: Go to position 4 - PumpToFlowcell start
17-03-17 22:18:12.538 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 22:18:12.558 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 22:18:12.558 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 3 to 4. Moving 1 positions.
17-03-17 22:18:12.558 -07 000000610 INF: ReagentValve: Xmit +04\r
17-03-17 22:18:12.688 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 22:18:12.708 -07 000000610 INF: ReagentValve: Recv 00CD\r
17-03-17 22:18:12.708 -07 000000610 INF: ReagentValve: Move+ from 3 to 4 took 205 steps, expected 204. Error = 1 steps (0.5%)
17-03-17 22:18:12.758 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 22:18:12.778 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-17 22:18:12.778 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 22:18:12.878 -07 000000610 INF: =================== Cycle #62, Pumping Reagent CMS (4) ===================
17-03-17 22:18:12.878 -07 000000610 INF: LanePump: Pumping from 4, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 22:18:12.878 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:18:12.908 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 22:18:12.908 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 22:18:12.908 -07 000000610 INF: =================== Cycle #62, Pumping Reagent CMS (4), Aspirating port InputPort ===================
17-03-17 22:18:13.038 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 22:18:13.078 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:18:14.518 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:18:14.548 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:18:14.968 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:18:14.998 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:18:14.998 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-17 22:18:14.998 -07 000000610 INF: =================== Cycle #62, Pumping Reagent CMS (4) ===================
17-03-17 22:18:15.128 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:18:15.158 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 22:18:15.158 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 22:18:15.288 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:18:15.318 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 22:18:15.318 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 22:18:15.318 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 22:18:15.448 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 22:18:15.478 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:18:15.908 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:18:15.938 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:18:15.938 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 22:18:15.938 -07 000000610 INF: =================== Cycle #62 ===================
17-03-17 22:18:16.958 -07 000000458 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 4 R1 2
17-03-17 22:18:16.958 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 61. Bubbles during last 5000 ms interval: R1=2, R2=4, Total=6. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=963, R2=987, Total=1950. Warn if over 250 bubbles per interval.
17-03-17 22:18:17.158 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 22:18:17.158 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 22:18:17.158 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 22:18:17.178 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-17 22:18:17.178 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 4 to 3. Moving 1 positions.
17-03-17 22:18:17.178 -07 000000610 INF: ReagentValve: Xmit -03\r
17-03-17 22:18:17.328 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 22:18:17.348 -07 000000610 INF: ReagentValve: Recv 00E1\r
17-03-17 22:18:17.348 -07 000000610 INF: ReagentValve: Move- from 4 to 3 took 225 steps, expected 204. Error = 21 steps (10.3%)
17-03-17 22:18:17.398 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 22:18:17.418 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 22:18:17.418 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 22:18:17.518 -07 000000610 INF: =================== Cycle #62, Pumping Reagent PR2 (3) ===================
17-03-17 22:18:17.518 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 22:18:17.518 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:18:17.548 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 22:18:17.548 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 22:18:17.548 -07 000000610 INF: =================== Cycle #62, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 22:18:17.578 -07 000000458 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 62, FrontChillerTemperature: 4.009895,
17-03-17 22:18:17.678 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 22:18:17.718 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:18:18.588 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:18:18.618 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:18:18.618 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-17 22:18:18.618 -07 000000610 INF: =================== Cycle #62, Pumping Reagent PR2 (3) ===================
17-03-17 22:18:18.748 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:18:18.778 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 22:18:18.778 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 22:18:18.908 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:18:18.938 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 22:18:18.938 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 22:18:18.938 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 22:18:19.068 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 22:18:19.098 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:18:19.528 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:18:19.558 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:18:19.558 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 22:18:19.558 -07 000000610 INF: =================== Cycle #62 ===================
17-03-17 22:18:19.558 -07 000000623 INF: WaitCommand(10000) start
17-03-17 22:18:19.558 -07 000000618 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 22:18:19.558 -07 000000618 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 22:18:20.778 -07 000000618 INF: AsyncDelayTimer waited 1216ms
17-03-17 22:18:20.778 -07 000000618 INF: LanePump: Xmit /1?\r
17-03-17 22:18:20.808 -07 000000618 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 22:18:20.808 -07 000000618 INF: LanePump: Current Position of Pump is: 1110
17-03-17 22:18:20.938 -07 000000618 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 22:18:20.978 -07 000000618 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:18:21.958 -07 000000551 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:18:21.958 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 61. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=963, R2=987, Total=1950. Warn if over 250 bubbles per interval.
17-03-17 22:18:22.508 -07 000000618 INF: LanePump: Xmit /1Q\r
17-03-17 22:18:22.538 -07 000000618 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:18:22.938 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 62, FrontChillerTemperature: 3.989471,
17-03-17 22:18:22.958 -07 000000618 INF: LanePump: Xmit /1Q\r
17-03-17 22:18:22.988 -07 000000618 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:18:22.988 -07 000000618 INF: LanePump: Waited 2010 ms for pump motion to complete
17-03-17 22:18:22.988 -07 000000618 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 22:18:22.988 -07 000000618 INF: ===================  ===================
17-03-17 22:18:26.958 -07 000000486 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:18:26.958 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 61. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=963, R2=987, Total=1950. Warn if over 250 bubbles per interval.
17-03-17 22:18:28.298 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 62, FrontChillerTemperature: 4.000345,
17-03-17 22:18:29.568 -07 000000623 INF: WaitCommand(10000) end
17-03-17 22:18:29.568 -07 000000610 INF: =================== Cycle #62, Pumping Reagent PR2 (3) ===================
17-03-17 22:18:29.568 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 250 µL, calling command Pumping to Flow Cell #1
17-03-17 22:18:29.568 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:18:29.608 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 22:18:29.608 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 22:18:29.608 -07 000000610 INF: =================== Cycle #62, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 22:18:29.738 -07 000000610 INF: LanePump: Xmit /1V400IP1500R\r
17-03-17 22:18:29.778 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:18:31.958 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:18:31.958 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 61. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=963, R2=987, Total=1950. Warn if over 250 bubbles per interval.
17-03-17 22:18:33.658 -07 000000561 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 62, FrontChillerTemperature: 4.014009,
17-03-17 22:18:35.908 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:18:35.938 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:18:36.358 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:18:36.388 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:18:36.808 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:18:36.838 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:18:36.958 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 4 R1 6
17-03-17 22:18:36.958 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 61. Bubbles during last 5000 ms interval: R1=6, R2=4, Total=10. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=969, R2=991, Total=1960. Warn if over 250 bubbles per interval.
17-03-17 22:18:37.258 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:18:37.288 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:18:37.708 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:18:37.738 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:18:37.738 -07 000000610 INF: LanePump: Waited 7959 ms for pump motion to complete
17-03-17 22:18:37.738 -07 000000610 INF: =================== Cycle #62, Pumping Reagent PR2 (3) ===================
17-03-17 22:18:37.868 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:18:37.898 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 22:18:37.898 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 22:18:38.028 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:18:38.058 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 22:18:38.058 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 22:18:38.058 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 22:18:38.188 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 22:18:38.218 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:18:38.648 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:18:38.678 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:18:38.678 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 22:18:38.678 -07 000000610 INF: =================== Cycle #62 ===================
17-03-17 22:18:39.018 -07 000000551 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 62, FrontChillerTemperature: 4.000345,
17-03-17 22:18:39.898 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 22:18:39.898 -07 000000610 INF: ReagentValve: Go to position 1 - PumpToFlowcell start
17-03-17 22:18:39.898 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 22:18:39.918 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 22:18:39.918 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 1. Moving 2 positions.
17-03-17 22:18:39.918 -07 000000610 INF: ReagentValve: Xmit -01\r
17-03-17 22:18:40.128 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 22:18:40.148 -07 000000610 INF: ReagentValve: Recv 0198\r
17-03-17 22:18:40.148 -07 000000610 INF: ReagentValve: Move- from 3 to 1 took 408 steps, expected 408. Error = 0 steps (0.0%)
17-03-17 22:18:40.198 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 22:18:40.218 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-17 22:18:40.218 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 22:18:40.318 -07 000000610 INF: =================== Cycle #62, Pumping Reagent IMT (1) ===================
17-03-17 22:18:40.318 -07 000000610 INF: LanePump: Pumping from 1, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 22:18:40.318 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:18:40.348 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 22:18:40.348 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 22:18:40.348 -07 000000610 INF: =================== Cycle #62, Pumping Reagent IMT (1), Aspirating port InputPort ===================
17-03-17 22:18:40.478 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 22:18:40.518 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:18:41.958 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:18:41.958 -07 000000482 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 5 R1 3
17-03-17 22:18:41.958 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 61. Bubbles during last 5000 ms interval: R1=3, R2=5, Total=8. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=972, R2=996, Total=1968. Warn if over 250 bubbles per interval.
17-03-17 22:18:41.988 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:18:42.408 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:18:42.438 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:18:42.438 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-17 22:18:42.438 -07 000000610 INF: =================== Cycle #62, Pumping Reagent IMT (1) ===================
17-03-17 22:18:42.568 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:18:42.598 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 22:18:42.598 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 22:18:42.728 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:18:42.758 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 22:18:42.758 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 22:18:42.758 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 22:18:42.888 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 22:18:42.918 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:18:43.348 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:18:43.378 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:18:43.378 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 22:18:43.378 -07 000000610 INF: =================== Cycle #62 ===================
17-03-17 22:18:44.378 -07 000000486 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 62, FrontChillerTemperature: 3.970374,
17-03-17 22:18:44.598 -07 000000610 INF: AsyncDelayTimer waited 1218ms
17-03-17 22:18:44.598 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 22:18:44.598 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 22:18:44.618 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-17 22:18:44.618 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 1 to 3. Moving 2 positions.
17-03-17 22:18:44.618 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 22:18:44.848 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 22:18:44.868 -07 000000610 INF: ReagentValve: Recv 01AC\r
17-03-17 22:18:44.868 -07 000000610 INF: ReagentValve: Move+ from 1 to 3 took 428 steps, expected 408. Error = 20 steps (4.9%)
17-03-17 22:18:44.918 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 22:18:44.938 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 22:18:44.938 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 22:18:45.038 -07 000000610 INF: =================== Cycle #62, Pumping Reagent PR2 (3) ===================
17-03-17 22:18:45.038 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 22:18:45.038 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:18:45.068 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 22:18:45.068 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 22:18:45.068 -07 000000610 INF: =================== Cycle #62, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 22:18:45.198 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 22:18:45.238 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:18:46.108 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:18:46.138 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:18:46.138 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-17 22:18:46.138 -07 000000610 INF: =================== Cycle #62, Pumping Reagent PR2 (3) ===================
17-03-17 22:18:46.268 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:18:46.298 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 22:18:46.298 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 22:18:46.428 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:18:46.458 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 22:18:46.458 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 22:18:46.458 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 22:18:46.588 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 22:18:46.618 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:18:46.958 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 4 R1 5
17-03-17 22:18:46.958 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 61. Bubbles during last 5000 ms interval: R1=5, R2=4, Total=9. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=977, R2=1000, Total=1977. Warn if over 250 bubbles per interval.
17-03-17 22:18:47.048 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:18:47.078 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:18:47.078 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 22:18:47.078 -07 000000610 INF: =================== Cycle #62 ===================
17-03-17 22:18:47.078 -07 000000610 INF: =================== Cycle #62, Flow Cell Temp 65° ===================
17-03-17 22:18:47.078 -07 000000610 INF: =================== Cycle #62, Flow Cell Temp 65°, FC temperature to 65° ===================
17-03-17 22:18:47.078 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 65000000\n [FlowCellTempControl]
17-03-17 22:18:47.078 -07 000000551 INF: FPGA: Recv TEC2TEMP 
17-03-17 22:18:47.088 -07 000000610 INF: FPGA: 'TEC2TEMP 0 65000000' command took 1 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 22:18:47.088 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 22:18:47.088 -07 000000486 INF: FPGA: Recv TEC2EN 
17-03-17 22:18:47.098 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:18:47.098 -07 000000610 INF: =================== Cycle #62, Flow Cell Temp 65° ===================
17-03-17 22:18:47.098 -07 000000610 INF: =================== Cycle #62 ===================
17-03-17 22:18:47.098 -07 000000610 INF: WaitCommand(30000) start
17-03-17 22:18:49.738 -07 000000623 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 62, FrontChillerTemperature: 3.999021,
17-03-17 22:18:51.958 -07 000000482 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 1
17-03-17 22:18:51.958 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 61. Bubbles during last 5000 ms interval: R1=1, R2=1, Total=2. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=978, R2=1001, Total=1979. Warn if over 250 bubbles per interval.
17-03-17 22:18:55.098 -07 000000459 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 62, FrontChillerTemperature: 4.004458,
17-03-17 22:18:56.958 -07 000000486 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 3 R1 0
17-03-17 22:18:56.958 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 61. Bubbles during last 5000 ms interval: R1=0, R2=3, Total=3. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=978, R2=1004, Total=1982. Warn if over 250 bubbles per interval.
17-03-17 22:19:00.458 -07 000000486 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 62, FrontChillerTemperature: 4.003063,
17-03-17 22:19:01.958 -07 000000623 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:19:01.958 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 61. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=978, R2=1004, Total=1982. Warn if over 250 bubbles per interval.
17-03-17 22:19:05.818 -07 000000623 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 62, FrontChillerTemperature: 4.003063,
17-03-17 22:19:06.958 -07 000000459 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:19:06.958 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 61. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=978, R2=1004, Total=1982. Warn if over 250 bubbles per interval.
17-03-17 22:19:11.178 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 62, FrontChillerTemperature: 3.994908,
17-03-17 22:19:11.958 -07 000000459 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:19:11.958 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 61. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=978, R2=1004, Total=1982. Warn if over 250 bubbles per interval.
17-03-17 22:19:16.538 -07 000000623 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 62, FrontChillerTemperature: 3.988112,
17-03-17 22:19:16.958 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:19:16.958 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 61. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=978, R2=1004, Total=1982. Warn if over 250 bubbles per interval.
17-03-17 22:19:17.108 -07 000000610 INF: WaitCommand(30000) end
17-03-17 22:19:17.108 -07 000000610 INF: =================== Cycle #62, Pumping Reagent PR2 (3) ===================
17-03-17 22:19:17.108 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 5 µL, calling command Pumping to Flow Cell #1
17-03-17 22:19:17.208 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:19:17.238 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 22:19:17.238 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 22:19:17.238 -07 000000610 INF: =================== Cycle #62, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 22:19:17.368 -07 000000610 INF: LanePump: Xmit /1V400IP30R\r
17-03-17 22:19:17.408 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:19:17.948 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:19:17.978 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:19:17.978 -07 000000610 INF: LanePump: Waited 569 ms for pump motion to complete
17-03-17 22:19:17.978 -07 000000610 INF: =================== Cycle #62, Pumping Reagent PR2 (3) ===================
17-03-17 22:19:18.108 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:19:18.138 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 22:19:18.138 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-17 22:19:18.268 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:19:18.298 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 22:19:18.298 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-17 22:19:18.298 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 22:19:18.428 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 22:19:18.458 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:19:18.888 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:19:18.918 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:19:18.918 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 22:19:18.918 -07 000000610 INF: =================== Cycle #62 ===================
17-03-17 22:19:18.918 -07 000000459 INF: WaitCommand(30000) start
17-03-17 22:19:18.918 -07 000000482 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 22:19:18.918 -07 000000482 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 22:19:20.138 -07 000000482 INF: AsyncDelayTimer waited 1216ms
17-03-17 22:19:20.138 -07 000000482 INF: LanePump: Xmit /1?\r
17-03-17 22:19:20.178 -07 000000482 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 22:19:20.178 -07 000000482 INF: LanePump: Current Position of Pump is: 1920
17-03-17 22:19:20.308 -07 000000482 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 22:19:20.348 -07 000000482 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:19:21.898 -07 000000623 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 62, FrontChillerTemperature: 4.019446,
17-03-17 22:19:21.958 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:19:21.958 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 61. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=978, R2=1004, Total=1982. Warn if over 250 bubbles per interval.
17-03-17 22:19:22.688 -07 000000482 INF: LanePump: Xmit /1Q\r
17-03-17 22:19:22.718 -07 000000482 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:19:23.138 -07 000000482 INF: LanePump: Xmit /1Q\r
17-03-17 22:19:23.168 -07 000000482 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:19:23.168 -07 000000482 INF: LanePump: Waited 2819 ms for pump motion to complete
17-03-17 22:19:23.168 -07 000000482 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 22:19:23.168 -07 000000482 INF: ===================  ===================
17-03-17 22:19:26.958 -07 000000486 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:19:26.958 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 61. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=978, R2=1004, Total=1982. Warn if over 250 bubbles per interval.
17-03-17 22:19:27.258 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 62, FrontChillerTemperature: 4.014009,
17-03-17 22:19:31.958 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:19:31.958 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 61. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=978, R2=1004, Total=1982. Warn if over 250 bubbles per interval.
17-03-17 22:19:32.618 -07 000000486 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 62, FrontChillerTemperature: 4.005817,
17-03-17 22:19:36.958 -07 000000482 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:19:36.958 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 61. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=978, R2=1004, Total=1982. Warn if over 250 bubbles per interval.
17-03-17 22:19:37.978 -07 000000623 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 62, FrontChillerTemperature: 4.008536,
17-03-17 22:19:41.958 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:19:41.958 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 61. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=978, R2=1004, Total=1982. Warn if over 250 bubbles per interval.
17-03-17 22:19:43.338 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 62, FrontChillerTemperature: 4.011254,
17-03-17 22:19:46.958 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:19:46.958 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 61. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=978, R2=1004, Total=1982. Warn if over 250 bubbles per interval.
17-03-17 22:19:48.698 -07 000000482 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 62, FrontChillerTemperature: 4.008536,
17-03-17 22:19:48.928 -07 000000459 INF: WaitCommand(30000) end
17-03-17 22:19:48.928 -07 000000610 INF: =================== Cycle #62, Flow Cell Temp 22° ===================
17-03-17 22:19:48.928 -07 000000610 INF: =================== Cycle #62, Flow Cell Temp 22°, FC temperature to 22° ===================
17-03-17 22:19:49.148 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 22:19:49.148 -07 000000459 INF: FPGA: Recv TEC2EN 
17-03-17 22:19:49.158 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:19:49.158 -07 000000610 INF: =================== Cycle #62, Flow Cell Temp 22° ===================
17-03-17 22:19:49.158 -07 000000610 INF: =================== Cycle #62 ===================
17-03-17 22:19:49.158 -07 000000610 INF: =================== Cycle #62, Pumping Reagent PR2 (3) ===================
17-03-17 22:19:49.158 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-17 22:19:49.158 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:19:49.188 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 22:19:49.188 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 22:19:49.188 -07 000000610 INF: =================== Cycle #62, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 22:19:49.318 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-17 22:19:49.358 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:19:51.958 -07 000000482 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 4 R1 4
17-03-17 22:19:51.958 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 61. Bubbles during last 5000 ms interval: R1=4, R2=4, Total=8. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=982, R2=1008, Total=1990. Warn if over 250 bubbles per interval.
17-03-17 22:19:52.488 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:19:52.518 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:19:52.938 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:19:52.968 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:19:53.388 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:19:53.418 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:19:53.418 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-17 22:19:53.418 -07 000000610 INF: =================== Cycle #62, Pumping Reagent PR2 (3) ===================
17-03-17 22:19:53.548 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:19:53.578 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 22:19:53.578 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 22:19:53.708 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:19:53.738 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 22:19:53.738 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 22:19:53.738 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 22:19:53.868 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 22:19:53.898 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:19:54.058 -07 000000482 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 62, FrontChillerTemperature: 4.003063,
17-03-17 22:19:54.328 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:19:54.358 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:19:54.358 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 22:19:54.358 -07 000000610 INF: =================== Cycle #62 ===================
17-03-17 22:19:55.578 -07 000000610 INF: AsyncDelayTimer waited 1217ms
17-03-17 22:19:55.578 -07 000000610 INF: ReagentValve: Go to position 2 - PumpToFlowcell start
17-03-17 22:19:55.578 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 22:19:55.598 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 22:19:55.598 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 2. Moving 1 positions.
17-03-17 22:19:55.598 -07 000000610 INF: ReagentValve: Xmit -02\r
17-03-17 22:19:55.748 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 22:19:55.768 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-17 22:19:55.768 -07 000000610 INF: ReagentValve: Move- from 3 to 2 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-17 22:19:55.818 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 22:19:55.838 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-17 22:19:55.838 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 22:19:55.938 -07 000000610 INF: =================== Cycle #62, Pumping Reagent USM (2) ===================
17-03-17 22:19:55.938 -07 000000610 INF: LanePump: Pumping from 2, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 22:19:55.938 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:19:55.968 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 22:19:55.968 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 22:19:55.968 -07 000000610 INF: =================== Cycle #62, Pumping Reagent USM (2), Aspirating port InputPort ===================
17-03-17 22:19:56.098 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 22:19:56.138 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:19:56.958 -07 000000482 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 3 R1 3
17-03-17 22:19:56.958 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 61. Bubbles during last 5000 ms interval: R1=3, R2=3, Total=6. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=985, R2=1011, Total=1996. Warn if over 250 bubbles per interval.
17-03-17 22:19:57.578 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:19:57.608 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:19:58.028 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:19:58.058 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:19:58.058 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-17 22:19:58.058 -07 000000610 INF: =================== Cycle #62, Pumping Reagent USM (2) ===================
17-03-17 22:19:58.188 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:19:58.218 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 22:19:58.218 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 22:19:58.348 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:19:58.378 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 22:19:58.378 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 22:19:58.378 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 22:19:58.508 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 22:19:58.538 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:19:58.968 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:19:58.998 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:19:58.998 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 22:19:58.998 -07 000000610 INF: =================== Cycle #62 ===================
17-03-17 22:19:59.418 -07 000000623 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 62, FrontChillerTemperature: 4.003063,
17-03-17 22:20:00.218 -07 000000610 INF: AsyncDelayTimer waited 1218ms
17-03-17 22:20:00.218 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 22:20:00.218 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 22:20:00.238 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-17 22:20:00.238 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 2 to 3. Moving 1 positions.
17-03-17 22:20:00.238 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 22:20:00.388 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 22:20:00.408 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-17 22:20:00.408 -07 000000610 INF: ReagentValve: Move+ from 2 to 3 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-17 22:20:00.458 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 22:20:00.478 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 22:20:00.478 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 22:20:00.578 -07 000000610 INF: =================== Cycle #62, Pumping Reagent PR2 (3) ===================
17-03-17 22:20:00.578 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 22:20:00.578 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:20:00.608 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 22:20:00.608 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 22:20:00.608 -07 000000610 INF: =================== Cycle #62, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 22:20:00.738 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 22:20:00.778 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:20:01.648 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:20:01.678 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:20:01.678 -07 000000610 INF: LanePump: Waited 900 ms for pump motion to complete
17-03-17 22:20:01.678 -07 000000610 INF: =================== Cycle #62, Pumping Reagent PR2 (3) ===================
17-03-17 22:20:01.808 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:20:01.838 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 22:20:01.838 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 22:20:01.958 -07 000000623 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 7 R1 7
17-03-17 22:20:01.958 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 61. Bubbles during last 5000 ms interval: R1=7, R2=7, Total=14. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=992, R2=1018, Total=2010. Warn if over 250 bubbles per interval.
17-03-17 22:20:01.968 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:20:01.998 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 22:20:01.998 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 22:20:01.998 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 22:20:02.128 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 22:20:02.158 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:20:02.588 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:20:02.618 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:20:02.618 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 22:20:02.618 -07 000000610 INF: =================== Cycle #62 ===================
17-03-17 22:20:02.618 -07 000000480 INF: WaitCommand(10000) start
17-03-17 22:20:02.618 -07 000000551 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 22:20:02.618 -07 000000551 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 22:20:03.838 -07 000000551 INF: AsyncDelayTimer waited 1216ms
17-03-17 22:20:03.838 -07 000000551 INF: LanePump: Xmit /1?\r
17-03-17 22:20:03.868 -07 000000551 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 22:20:03.868 -07 000000551 INF: LanePump: Current Position of Pump is: 1110
17-03-17 22:20:03.998 -07 000000551 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 22:20:04.038 -07 000000551 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:20:05.168 -07 000000482 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 62, FrontChillerTemperature: 4.009895,
17-03-17 22:20:05.568 -07 000000551 INF: LanePump: Xmit /1Q\r
17-03-17 22:20:05.598 -07 000000551 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:20:06.018 -07 000000551 INF: LanePump: Xmit /1Q\r
17-03-17 22:20:06.048 -07 000000551 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:20:06.048 -07 000000551 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-17 22:20:06.048 -07 000000551 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 22:20:06.048 -07 000000551 INF: ===================  ===================
17-03-17 22:20:06.958 -07 000000551 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:20:06.958 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 61. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=992, R2=1018, Total=2010. Warn if over 250 bubbles per interval.
17-03-17 22:20:10.538 -07 000000486 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 62, FrontChillerTemperature: 4.008536,
17-03-17 22:20:11.958 -07 000000459 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:20:11.958 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 61. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=992, R2=1018, Total=2010. Warn if over 250 bubbles per interval.
17-03-17 22:20:12.628 -07 000000480 INF: WaitCommand(10000) end
17-03-17 22:20:12.628 -07 000000610 INF: =================== Cycle #62, Imaging ===================
17-03-17 22:20:12.628 -07 000000610 INF: Imaging Cycle 62: ScanTilesCommand Cycle 62 time start.
17-03-17 22:20:12.638 -07 000000610 INF: ReagentValve: Go to position 24 (Plug) - Start of ScanTilesCommand
17-03-17 22:20:12.638 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 22:20:12.658 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 22:20:12.658 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 24. Moving 3 positions.
17-03-17 22:20:12.658 -07 000000610 INF: ReagentValve: Xmit -18\r
17-03-17 22:20:12.958 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 22:20:12.978 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-17 22:20:12.978 -07 000000610 INF: ReagentValve: Move- from 3 to 24 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-17 22:20:13.028 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 22:20:13.048 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-17 22:20:13.048 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:20:13.048 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:20:13.048 -07 000000623 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms start.
17-03-17 22:20:13.048 -07 000000623 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:20:13.048 -07 000000623 INF: FPGA: Xmit EXLED1ON\n [RedLED]
17-03-17 22:20:13.058 -07 000000501 INF: FPGA: Recv EXLED1ON 
17-03-17 22:20:13.058 -07 000000623 INF: FPGA: 'EXLED1ON' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 22:20:13.058 -07 000000623 INF: FPGA: Xmit EXLED1ADCR\n [RedLED]
17-03-17 22:20:13.058 -07 000000459 INF: FPGA: Recv EXLED1ADCR 23190
17-03-17 22:20:13.068 -07 000000623 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:13.068 -07 000000623 INF: RedLED: Using Red data: Photodiode ADC 23190 --> 7.4 mW (old method), or 205.5 mW (new method). Difference = 198.1 mW
17-03-17 22:20:13.068 -07 000000623 INF: FPGA: Xmit EXLED1OFF\n [RedLED]
17-03-17 22:20:13.068 -07 000000482 INF: FPGA: Recv EXLED1OFF 
17-03-17 22:20:13.078 -07 000000623 INF: FPGA: 'EXLED1OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:13.078 -07 000000623 INF: RedLED: LED was on for 19 ms
17-03-17 22:20:13.078 -07 000000623 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms end. Duration was 23 ms.
17-03-17 22:20:13.078 -07 000000623 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms start.
17-03-17 22:20:13.078 -07 000000623 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:20:13.078 -07 000000623 INF: FPGA: Xmit EXLED2ON\n [GreenLED]
17-03-17 22:20:13.078 -07 000000551 INF: FPGA: Recv EXLED2ON 
17-03-17 22:20:13.088 -07 000000623 INF: FPGA: 'EXLED2ON' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:20:13.088 -07 000000623 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-17 22:20:13.088 -07 000000448 INF: FPGA: Recv EXLED1ADCR 2098
17-03-17 22:20:13.098 -07 000000623 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:13.098 -07 000000623 INF: GreenLED: Using Green data: Photodiode ADC 2098 --> 0.9 mW (old method), or 182.3 mW (new method). Difference = 181.4 mW
17-03-17 22:20:13.098 -07 000000623 INF: FPGA: Xmit EXLED2OFF\n [GreenLED]
17-03-17 22:20:13.098 -07 000000480 INF: FPGA: Recv EXLED2OFF 
17-03-17 22:20:13.108 -07 000000623 INF: FPGA: 'EXLED2OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:13.108 -07 000000623 INF: GreenLED: LED was on for 19 ms
17-03-17 22:20:13.108 -07 000000623 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms end. Duration was 28 ms.
17-03-17 22:20:13.108 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-17 22:20:13.108 -07 000000480 INF: FPGA: Recv EMCUR 
17-03-17 22:20:13.118 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:20:13.118 -07 000000610 INF: FPGA: Xmit EMOUT 20 70\n [Compensator]
17-03-17 22:20:13.618 -07 000000480 INF: FPGA: Recv EMOUT
17-03-17 22:20:13.618 -07 000000610 INF: FPGA: 'EMOUT 20 70' command took 0 ms to send, 493 ms to get response, and 502 ms overall
17-03-17 22:20:13.618 -07 000000610 INF: FPGA: Xmit EMCUR 75\n [Compensator]
17-03-17 22:20:13.618 -07 000000448 INF: FPGA: Recv EMCUR 
17-03-17 22:20:13.628 -07 000000610 INF: FPGA: 'EMCUR 75' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:20:13.628 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 22:20:13.628 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 75.38037109375, Z-Position -0.127807559156287. ------
17-03-17 22:20:13.628 -07 000000551 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:20:13.628 -07 000000501 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.17942 mm
17-03-17 22:20:13.628 -07 000000501 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:20:13.628 -07 000000482 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-17 22:20:13.628 -07 000000482 INF: Y Motor: Moving to 59.9126 mm, started at 75.3804 mm, delta = -15.4678 mm
17-03-17 22:20:13.638 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:20:13.638 -07 000000551 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:20:13.638 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:20:13.638 -07 000000448 INF: Z Motor: Entering MoveAbsStepped (DAC = 39194, sync = True, waitForSettling = False)
17-03-17 22:20:13.638 -07 000000448 INF: Z Motor: Moving to -0.179419 mm, started at -0.127808 mm, distance = -51.61 um
17-03-17 22:20:13.638 -07 000000486 INF: FPGA: Recv YRDPOS 154379
17-03-17 22:20:13.648 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:13.648 -07 000000482 INF: Y Motor: Encoder = 154379 = motor step 120608.6 = 75.3804 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:20:13.648 -07 000000482 INF: Y Motor: Last commanded position = 75.3806 mm (120608.9 steps), delta from last commanded position = -15.4680 mm (-24748.8 steps). UsingTableMove = False
17-03-17 22:20:13.648 -07 000000482 INF: Y Motor: Moving to 122701 encoder counts
17-03-17 22:20:13.648 -07 000000448 INF: FPGA: Xmit ZDACW 39194\n [Z Motor]
17-03-17 22:20:13.648 -07 000000480 INF: FPGA: Recv ZDACW
17-03-17 22:20:13.658 -07 000000551 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:20:13.658 -07 000000448 INF: FPGA: 'ZDACW 39194' command took 1 ms to send, 0 ms to get response, and 18 ms overall
17-03-17 22:20:13.668 -07 000000482 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-17 22:20:13.678 -07 000000448 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:20:13.678 -07 000000623 INF: FPGA: Recv ZDACR 39194
17-03-17 22:20:13.688 -07 000000448 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:20:13.688 -07 000000448 INF: Z Motor: MoveAbsStepped took 50 ms (did NOT wait for settling yet))
17-03-17 22:20:13.858 -07 000000623 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:20:13.858 -07 000000551 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 22:20:15.348 -07 000000448 INF: FPGA: Recv YMVTO 122703 24775
17-03-17 22:20:15.348 -07 000000482 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1675 ms to get response, and 1705 ms overall
17-03-17 22:20:15.348 -07 000000482 INF: Y Motor: Position error before settling = 2 encoder counts (0.001 mm)
17-03-17 22:20:15.348 -07 000000482 INF: Y Motor: To move from 75.380 to 59.913 (-15.468 mm) should take 24748 steps, but required 24775 steps (15.484 mm). Slippage = 0.017 mm (0.00%).
17-03-17 22:20:15.348 -07 000000482 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1705 ms, distance = 15.468 mm, average velocity = 9.072 mm/sec
17-03-17 22:20:15.908 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 62, FrontChillerTemperature: 4.023489,
17-03-17 22:20:16.958 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:20:16.958 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 61. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=992, R2=1018, Total=2010. Warn if over 250 bubbles per interval.
17-03-17 22:20:18.198 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:20:18.198 -07 000000462 INF: FPGA: Recv YRDPOS 122697
17-03-17 22:20:18.208 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:20:18.208 -07 000000482 INF: Y Motor: Encoder = 122697 = motor step 95857.0 = 59.9106 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:20:18.228 -07 000000482 INF: Y Motor: After move to 59.912609, error = -0.001965, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:20:18.228 -07 000000482 INF: Y Motor: Position error after settling = -4 encoder counts (-0.002 mm), Delta during settling = -6 counts (-0.003 mm)
17-03-17 22:20:18.228 -07 000000482 INF: Y Motor: Moved to 59.9106 after 4596 ms
17-03-17 22:20:18.238 -07 000000501 INF: Z Motor: EndOfMoveAbsStepped: target = -0.179419 mm (DAC = 39194)
17-03-17 22:20:18.238 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:18.238 -07 000000623 INF: FPGA: Recv ZSGSRD 37223
17-03-17 22:20:18.248 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:20:18.248 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:18.248 -07 000000448 INF: FPGA: Recv ZSGSRD 37218
17-03-17 22:20:18.258 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:18.258 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:18.258 -07 000000551 INF: FPGA: Recv ZSGSRD 37213
17-03-17 22:20:18.268 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:18.268 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:19.068 -07 000000462 INF: FPGA: Recv ZSGSRD 37212
17-03-17 22:20:19.068 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 791 ms to get response, and 801 ms overall
17-03-17 22:20:19.068 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:19.068 -07 000000462 INF: FPGA: Recv ZSGSRD 37230
17-03-17 22:20:19.078 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:20:19.078 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:19.078 -07 000000623 INF: FPGA: Recv ZSGSRD 37229
17-03-17 22:20:19.088 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:19.088 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:19.088 -07 000000480 INF: FPGA: Recv ZSGSRD 37218
17-03-17 22:20:19.098 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:19.098 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:19.098 -07 000000551 INF: FPGA: Recv ZSGSRD 37217
17-03-17 22:20:19.108 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:19.108 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:19.108 -07 000000480 INF: FPGA: Recv ZSGSRD 37219
17-03-17 22:20:19.118 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:19.118 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:19.118 -07 000000482 INF: FPGA: Recv ZSGSRD 37220
17-03-17 22:20:19.128 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:19.128 -07 000000501 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:20:19.128 -07 000000480 INF: FPGA: Recv ZPIEZORD 33667
17-03-17 22:20:19.138 -07 000000501 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:19.138 -07 000000501 INF: Z Motor: Piezo is near 51.9 V (nominally 0 to 100 V), expect near 59.8 V, since DAC is at 5.981 V. Piezo Error = -7.9 V.
17-03-17 22:20:19.138 -07 000000501 INF: Z Motor: ReadAdcAverage: Commanded Z = -179.4 um, Read 10 ADC samples: Avg = 37220 (-178.5 uncal um), Error = 0.9 uncal um, Median = 37218 (-178.5 uncal um), StdDev = 6 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 37212 (-178.5 uncal um), Max = 37230 (-178.6 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 22:20:19.138 -07 000000501 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37220, posNoise = 10, negNoise = 8
17-03-17 22:20:19.138 -07 000000501 INF: Z Motor: After move to -0.179419, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:20:19.138 -07 000000501 INF: Z Motor: Settle wait time = 4598 ms, measure time = 901 ms (allowed 150 ms), total time = 5499 ms
17-03-17 22:20:19.138 -07 000000501 INF: Z Motor: Warning: Actual position measuring time = 901 ms, longer than max expected time of 150 ms
17-03-17 22:20:19.138 -07 000000501 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 5503 ms
17-03-17 22:20:19.138 -07 000000501 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:20:19.138 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:20:19.138 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:20:19.138 -07 000000482 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:20:19.138 -07 000000459 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:20:19.138 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:20:19.138 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:20:19.138 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 22:20:19.138 -07 000000480 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-17 22:20:19.168 -07 000000480 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 23 ms.
17-03-17 22:20:19.168 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:20:19.168 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-17 22:20:19.168 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:20:19.188 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 22:20:19.188 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 44 ms.
17-03-17 22:20:19.188 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:20:19.228 -07 000000623 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:20:19.428 -07 000000501 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:20:19.428 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:20:19.428 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:20:19.438 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591997688, 0x0, 559484976) start.
17-03-17 22:20:19.468 -07 000000482 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:20:19.468 -07 000000462 INF: FPGA: Recv CAMSNAP
17-03-17 22:20:19.468 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 285 ms overall
17-03-17 22:20:19.558 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591997688, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 22:20:19.558 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:20:19.558 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:20:19.558 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-17 22:20:19.668 -07 000000459 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:20:19.668 -07 000000482 INF: Image SNR check: start
17-03-17 22:20:19.668 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:20:19.678 -07 000000459 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:20:19.678 -07 000000459 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:20:19.678 -07 000000482 INF: Image SNR check: pass  [peak (Max-Min)=61.58]
17-03-17 22:20:19.678 -07 000000482 INF: Autofocus start
17-03-17 22:20:19.678 -07 000000482 INF: MeasureProfile start
17-03-17 22:20:19.688 -07 000000482 INF: MeasureProfile done
17-03-17 22:20:19.698 -07 000000482 INF: X=16  Z correction [um]=0.01042744
17-03-17 22:20:19.698 -07 000000482 INF: Autofocus finished
17-03-17 22:20:19.878 -07 000000482 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:20:19.878 -07 000000459 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:20:19.878 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.91064453125, Z-position -0.179432527927478. ----------
17-03-17 22:20:19.878 -07 000000610 INF: Cycle	62	Tile	1	Exposure Settings		A	450	G	216	T	216	C	450
17-03-17 22:20:19.888 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37709, sync = True, waitForSettling = True)
17-03-17 22:20:19.888 -07 000000610 INF: Z Motor: Moving to -0.172621 mm, started at -0.179433 mm, distance = 6.81 um
17-03-17 22:20:19.888 -07 000000610 INF: FPGA: Xmit ZDACW 37709\n [Z Motor]
17-03-17 22:20:19.888 -07 000000462 INF: FPGA: Recv ZDACW
17-03-17 22:20:19.898 -07 000000610 INF: FPGA: 'ZDACW 37709' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:20:19.898 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:20:19.898 -07 000000459 INF: FPGA: Recv ZDACR 37709
17-03-17 22:20:19.908 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:19.908 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:20:20.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:20.058 -07 000000501 INF: FPGA: Recv ZSGSRD 36162
17-03-17 22:20:20.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:20:20.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:20.068 -07 000000618 INF: FPGA: Recv ZSGSRD 36165
17-03-17 22:20:20.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:20.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:20.078 -07 000000501 INF: FPGA: Recv ZSGSRD 36166
17-03-17 22:20:20.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:20.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:20.088 -07 000000618 INF: FPGA: Recv ZSGSRD 36161
17-03-17 22:20:20.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:20.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:20.098 -07 000000462 INF: FPGA: Recv ZSGSRD 36162
17-03-17 22:20:20.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:20.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:20.108 -07 000000618 INF: FPGA: Recv ZSGSRD 36158
17-03-17 22:20:20.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:20.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:20.118 -07 000000462 INF: FPGA: Recv ZSGSRD 36155
17-03-17 22:20:20.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:20.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:20.128 -07 000000618 INF: FPGA: Recv ZSGSRD 36163
17-03-17 22:20:20.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:20.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:20.138 -07 000000462 INF: FPGA: Recv ZSGSRD 36162
17-03-17 22:20:20.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:20.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:20.148 -07 000000482 INF: FPGA: Recv ZSGSRD 36159
17-03-17 22:20:20.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:20.158 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:20:20.158 -07 000000618 INF: FPGA: Recv ZPIEZORD 32264
17-03-17 22:20:20.168 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:20.168 -07 000000610 INF: Z Motor: Piezo is near 48.9 V (nominally 0 to 100 V), expect near 57.5 V, since DAC is at 5.754 V. Piezo Error = -8.6 V.
17-03-17 22:20:20.168 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.6 um, Read 10 ADC samples: Avg = 36161 (-171.7 uncal um), Error = 0.9 uncal um, Median = 36162 (-171.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36155 (-171.7 uncal um), Max = 36166 (-171.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 22:20:20.168 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36161, posNoise = 5, negNoise = 6
17-03-17 22:20:20.168 -07 000000610 INF: Z Motor: After move to -0.172621, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:20:20.168 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 22:20:20.168 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:20:20.168 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:20:20.168 -07 000000482 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:20:20.168 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:20:20.168 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:20:20.168 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:20:20.168 -07 000000459 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:20:20.168 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:20:20.168 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:20:20.168 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:20:20.168 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:20:20.168 -07 000000459 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-17 22:20:20.178 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 22:20:20.178 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:20:20.188 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 22:20:20.188 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 22:20:20.198 -07 000000459 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 22 ms.
17-03-17 22:20:20.198 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:20:20.198 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:20:20.198 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:20:20.208 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 13 ms.
17-03-17 22:20:20.208 -07 000000459 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 40 ms.
17-03-17 22:20:20.208 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 450 450 216 216 37885 150\n [Camera]
17-03-17 22:20:20.408 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:20:20.858 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 642
17-03-17 22:20:20.858 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 642
17-03-17 22:20:20.868 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:20:20.978 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 642
17-03-17 22:20:20.978 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 642
17-03-17 22:20:20.978 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:20:20.978 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:20:20.978 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1441468064, 0x0, 391868352) start.
17-03-17 22:20:20.988 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:20:20.988 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 22:20:21.058 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37885 835
17-03-17 22:20:21.208 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning grn on 985
17-03-17 22:20:21.298 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 62, FrontChillerTemperature: 3.996267,
17-03-17 22:20:21.378 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1441468064, 0x0, 391868352) end. Duration was 397 ms.
17-03-17 22:20:21.378 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 22:20:21.378 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:20:21.378 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:20:21.378 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 519 ms.
17-03-17 22:20:21.388 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 395 ms.
17-03-17 22:20:21.388 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 22:20:21.388 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:20:21.388 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:20:21.398 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-17 22:20:21.418 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1201
17-03-17 22:20:21.418 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1201
17-03-17 22:20:21.428 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:20:21.428 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1201
17-03-17 22:20:21.428 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1201
17-03-17 22:20:21.428 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:20:21.428 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 22:20:21.428 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:20:21.538 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:20:21.538 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 1476890328, 0x0, 418435064) start.
17-03-17 22:20:21.618 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP 1394
17-03-17 22:20:21.618 -07 000000448 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:20:21.618 -07 000000610 INF: FPGA: 'CAMDBLSNAP 450 450 216 216 37885 150' command took 2 ms to send, 1390 ms to get response, and 1401 ms overall
17-03-17 22:20:21.618 -07 000000610 INF: Skipping AutoFocus in Tile 2: adopting Best-Z from the cache: -0.172895
17-03-17 22:20:21.618 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.17289 mm
17-03-17 22:20:21.618 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:20:21.618 -07 000000623 INF: Z Motor: Entering MoveAbsStepped (DAC = 37769, sync = True, waitForSettling = False)
17-03-17 22:20:21.618 -07 000000618 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-17 22:20:21.618 -07 000000618 INF: Y Motor: Moving to 60.7426 mm, started at 59.9106 mm, delta = 0.8320 mm
17-03-17 22:20:21.618 -07 000000623 INF: Z Motor: Moving to -0.172895 mm, started at -0.172629 mm, distance = -0.27 um
17-03-17 22:20:21.628 -07 000000623 INF: FPGA: Xmit ZDACW 37769\n [Z Motor]
17-03-17 22:20:21.628 -07 000000462 INF: FPGA: Recv ZDACW
17-03-17 22:20:21.638 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:20:21.638 -07 000000623 INF: FPGA: 'ZDACW 37769' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 22:20:21.638 -07 000000551 INF: FPGA: Recv YRDPOS 122697
17-03-17 22:20:21.648 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-17 22:20:21.648 -07 000000618 INF: Y Motor: Encoder = 122697 = motor step 95857.0 = 59.9106 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:20:21.648 -07 000000618 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:20:21.648 -07 000000618 INF: Y Motor: Moving 1331 steps2
17-03-17 22:20:21.658 -07 000000623 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:20:21.658 -07 000000459 INF: FPGA: Recv ZDACR 37769
17-03-17 22:20:21.668 -07 000000618 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:20:21.668 -07 000000623 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:20:21.668 -07 000000623 INF: Z Motor: MoveAbsStepped took 44 ms (did NOT wait for settling yet))
17-03-17 22:20:21.818 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 388 ms.
17-03-17 22:20:21.818 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 22:20:21.818 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:20:21.818 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 22:20:21.818 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 22:20:21.928 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 1476890328, 0x0, 418435064) end. Duration was 395 ms.
17-03-17 22:20:21.928 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 22:20:21.928 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:20:21.938 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:20:21.938 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 513 ms.
17-03-17 22:20:21.958 -07 000000448 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:20:21.958 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 61. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=992, R2=1018, Total=2010. Warn if over 250 bubbles per interval.
17-03-17 22:20:22.038 -07 000000623 INF: FPGA: Recv YMVTILE
17-03-17 22:20:22.038 -07 000000618 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 22:20:22.068 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:20:22.078 -07 000000551 INF: FPGA: Recv YRDPOS 124381
17-03-17 22:20:22.078 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 22:20:22.078 -07 000000618 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:20:22.078 -07 000000618 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-17 22:20:22.078 -07 000000618 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.832 mm, average velocity = 2.096 mm/sec
17-03-17 22:20:23.028 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:20:23.028 -07 000000482 INF: FPGA: Recv YRDPOS 124381
17-03-17 22:20:23.038 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:23.038 -07 000000618 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:20:23.058 -07 000000618 INF: Y Motor: After move to 60.742607, error = -0.009697, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:20:23.058 -07 000000618 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:20:23.058 -07 000000618 INF: Y Motor: Moved to 60.7329 after 1440 ms (table move)
17-03-17 22:20:23.058 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172895 mm (DAC = 37769)
17-03-17 22:20:23.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:23.068 -07 000000459 INF: FPGA: Recv ZSGSRD 36202
17-03-17 22:20:23.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 22:20:23.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:23.068 -07 000000462 INF: FPGA: Recv ZSGSRD 36203
17-03-17 22:20:23.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:20:23.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:23.078 -07 000000618 INF: FPGA: Recv ZSGSRD 36207
17-03-17 22:20:23.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:23.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:23.088 -07 000000462 INF: FPGA: Recv ZSGSRD 36201
17-03-17 22:20:23.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:23.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:23.098 -07 000000501 INF: FPGA: Recv ZSGSRD 36198
17-03-17 22:20:23.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:23.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:23.108 -07 000000623 INF: FPGA: Recv ZSGSRD 36205
17-03-17 22:20:23.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:23.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:23.118 -07 000000486 INF: FPGA: Recv ZSGSRD 36204
17-03-17 22:20:23.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:23.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:23.128 -07 000000448 INF: FPGA: Recv ZSGSRD 36214
17-03-17 22:20:23.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:23.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:23.138 -07 000000486 INF: FPGA: Recv ZSGSRD 36197
17-03-17 22:20:23.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:23.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:23.148 -07 000000623 INF: FPGA: Recv ZSGSRD 36195
17-03-17 22:20:23.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:23.158 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:20:23.158 -07 000000551 INF: FPGA: Recv ZPIEZORD 32375
17-03-17 22:20:23.168 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:23.168 -07 000000610 INF: Z Motor: Piezo is near 49.2 V (nominally 0 to 100 V), expect near 57.6 V, since DAC is at 5.763 V. Piezo Error = -8.5 V.
17-03-17 22:20:23.168 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.9 um, Read 10 ADC samples: Avg = 36203 (-172.0 uncal um), Error = 0.9 uncal um, Median = 36202 (-172.0 uncal um), StdDev = 5 (0.0 uncal um), Range = 19 (0.1 uncal um), Min = 36195 (-172.0 uncal um), Max = 36214 (-172.1 uncal um), Pos Noise = 11 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 22:20:23.168 -07 000000610 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36203, posNoise = 11, negNoise = 8
17-03-17 22:20:23.168 -07 000000610 INF: Z Motor: After move to -0.172895, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:20:23.168 -07 000000610 INF: Z Motor: Settle wait time = 1442 ms, measure time = 102 ms (allowed 150 ms), total time = 1544 ms
17-03-17 22:20:23.168 -07 000000610 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 22:20:23.218 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1596 ms
17-03-17 22:20:23.218 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:20:23.218 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.73291015625, Z-position -0.172899104179307. ----------
17-03-17 22:20:23.218 -07 000000610 INF: Cycle	62	Tile	2	Exposure Settings		A	450	G	216	T	216	C	450
17-03-17 22:20:23.218 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37592, sync = True, waitForSettling = True)
17-03-17 22:20:23.218 -07 000000610 INF: Z Motor: Moving to -0.172085 mm, started at -0.172899 mm, distance = 0.81 um
17-03-17 22:20:23.218 -07 000000610 INF: FPGA: Xmit ZDACW 37592\n [Z Motor]
17-03-17 22:20:23.218 -07 000000462 INF: FPGA: Recv ZDACW
17-03-17 22:20:23.228 -07 000000610 INF: FPGA: 'ZDACW 37592' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:20:23.238 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:20:23.238 -07 000000486 INF: FPGA: Recv ZDACR 37592
17-03-17 22:20:23.248 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:20:23.248 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:20:23.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:23.398 -07 000000448 INF: FPGA: Recv ZSGSRD 36077
17-03-17 22:20:23.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:20:23.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:23.408 -07 000000459 INF: FPGA: Recv ZSGSRD 36078
17-03-17 22:20:23.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:23.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:23.418 -07 000000623 INF: FPGA: Recv ZSGSRD 36072
17-03-17 22:20:23.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:23.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:23.428 -07 000000448 INF: FPGA: Recv ZSGSRD 36073
17-03-17 22:20:23.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:23.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:23.438 -07 000000551 INF: FPGA: Recv ZSGSRD 36082
17-03-17 22:20:23.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:23.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:23.448 -07 000000623 INF: FPGA: Recv ZSGSRD 36079
17-03-17 22:20:23.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:23.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:23.458 -07 000000501 INF: FPGA: Recv ZSGSRD 36077
17-03-17 22:20:23.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:23.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:23.468 -07 000000462 INF: FPGA: Recv ZSGSRD 36073
17-03-17 22:20:23.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:23.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:23.478 -07 000000482 INF: FPGA: Recv ZSGSRD 36078
17-03-17 22:20:23.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:23.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:23.488 -07 000000462 INF: FPGA: Recv ZSGSRD 36081
17-03-17 22:20:23.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:23.498 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:20:23.498 -07 000000462 INF: FPGA: Recv ZPIEZORD 32172
17-03-17 22:20:23.508 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:23.508 -07 000000610 INF: Z Motor: Piezo is near 48.7 V (nominally 0 to 100 V), expect near 57.4 V, since DAC is at 5.736 V. Piezo Error = -8.6 V.
17-03-17 22:20:23.508 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.1 um, Read 10 ADC samples: Avg = 36077 (-171.2 uncal um), Error = 0.9 uncal um, Median = 36078 (-171.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 36072 (-171.2 uncal um), Max = 36082 (-171.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 22:20:23.508 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36077, posNoise = 5, negNoise = 5
17-03-17 22:20:23.508 -07 000000610 INF: Z Motor: After move to -0.172085, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:20:23.508 -07 000000610 INF: Z Motor: MoveAbsStepped took 284 ms)
17-03-17 22:20:23.508 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:20:23.508 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:20:23.508 -07 000000482 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:20:23.508 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:20:23.508 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:20:23.508 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:20:23.508 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 22:20:23.508 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:20:23.508 -07 000000482 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:20:23.508 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:20:23.518 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 22:20:23.518 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:20:23.518 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:20:23.518 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:20:23.518 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 22:20:23.518 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:20:23.528 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 22:20:23.528 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 22:20:23.528 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-17 22:20:23.528 -07 000000482 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 22:20:23.538 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 450 450 216 216 37769 150\n [Camera]
17-03-17 22:20:23.738 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:20:24.188 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 642
17-03-17 22:20:24.188 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 642
17-03-17 22:20:24.188 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:20:24.188 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 642
17-03-17 22:20:24.188 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 642
17-03-17 22:20:24.198 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:20:24.198 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1441468064, 0x0, 391868352) start.
17-03-17 22:20:24.198 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:20:24.198 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:20:24.198 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-17 22:20:24.578 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 386 ms.
17-03-17 22:20:24.578 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 22:20:24.578 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:20:24.588 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:20:24.588 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1441468064, 0x0, 391868352) end. Duration was 391 ms.
17-03-17 22:20:24.588 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 22:20:24.588 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:20:24.588 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:20:24.588 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 22:20:24.588 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 22:20:24.598 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37769 835
17-03-17 22:20:24.598 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning grn on 985
17-03-17 22:20:24.748 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1201
17-03-17 22:20:24.748 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1201
17-03-17 22:20:24.748 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:20:24.748 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:20:24.748 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start.
17-03-17 22:20:24.748 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1201
17-03-17 22:20:24.748 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1201
17-03-17 22:20:24.748 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:20:24.748 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:20:24.748 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) start.
17-03-17 22:20:25.148 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 407 ms.
17-03-17 22:20:25.148 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-17 22:20:25.148 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:20:25.158 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) end. Duration was 406 ms.
17-03-17 22:20:25.158 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-17 22:20:25.158 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:20:25.158 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:20:25.158 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-17 22:20:25.158 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:20:25.168 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 417 ms.
17-03-17 22:20:25.168 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP 1393
17-03-17 22:20:25.168 -07 000000462 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:20:25.168 -07 000000610 INF: FPGA: 'CAMDBLSNAP 450 450 216 216 37769 150' command took 2 ms to send, 1624 ms to get response, and 1633 ms overall
17-03-17 22:20:25.168 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 22:20:25.168 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.73291015625, Z-Position -0.172089653449445. ------
17-03-17 22:20:25.178 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:20:25.178 -07 000000501 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.17837 mm
17-03-17 22:20:25.178 -07 000000501 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:20:26.188 -07 000000480 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-17 22:20:26.188 -07 000000480 INF: Y Motor: Moving to 61.5726 mm, started at 60.7329 mm, delta = 0.8397 mm
17-03-17 22:20:26.188 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:20:26.728 -07 000000551 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:20:26.728 -07 000000551 INF: FPGA: Recv YRDPOS 124382
17-03-17 22:20:26.728 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1547 ms to get response, and 1553 ms overall
17-03-17 22:20:26.728 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 537 ms to get response, and 545 ms overall
17-03-17 22:20:26.728 -07 000000462 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:20:26.728 -07 000000480 INF: Y Motor: Encoder = 124382 = motor step 97173.4 = 60.7334 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:20:26.728 -07 000000551 INF: Z Motor: Entering MoveAbsStepped (DAC = 38966, sync = True, waitForSettling = False)
17-03-17 22:20:26.728 -07 000000551 INF: Z Motor: Moving to -0.178375 mm, started at -0.172090 mm, distance = -6.29 um
17-03-17 22:20:26.738 -07 000000551 INF: FPGA: Xmit ZDACW 38966\n [Z Motor]
17-03-17 22:20:26.738 -07 000000480 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:20:26.738 -07 000000480 INF: Y Motor: Moving 1343 steps-20
17-03-17 22:20:26.748 -07 000000480 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:20:27.728 -07 000000618 INF: FPGA: Recv ZDACW
17-03-17 22:20:27.728 -07 000000618 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:20:27.728 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:20:27.728 -07 000000551 INF: FPGA: 'ZDACW 38966' command took 0 ms to send, 980 ms to get response, and 991 ms overall
17-03-17 22:20:27.728 -07 000000462 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 990 ms to get response, and 993 ms overall
17-03-17 22:20:27.728 -07 000000618 INF: FPGA: Recv YMVTILE
17-03-17 22:20:27.728 -07 000000480 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 972 ms to get response, and 986 ms overall
17-03-17 22:20:27.728 -07 000000551 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:20:27.728 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 61. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=992, R2=1018, Total=2010. Warn if over 250 bubbles per interval.
17-03-17 22:20:27.728 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 62, FrontChillerTemperature: 3.989471,
17-03-17 22:20:27.728 -07 000000618 INF: FPGA: Recv ZDACR 38966
17-03-17 22:20:27.738 -07 000000551 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:20:27.738 -07 000000551 INF: Z Motor: MoveAbsStepped took 1000 ms (did NOT wait for settling yet))
17-03-17 22:20:27.778 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:20:27.778 -07 000000486 INF: FPGA: Recv YRDPOS 126083
17-03-17 22:20:27.788 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 22:20:27.788 -07 000000480 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:20:27.788 -07 000000480 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-17 22:20:27.788 -07 000000480 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 987 ms, distance = 0.840 mm, average velocity = 0.851 mm/sec
17-03-17 22:20:28.738 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:20:28.738 -07 000000462 INF: FPGA: Recv YRDPOS 126083
17-03-17 22:20:28.748 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:20:28.748 -07 000000480 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:20:28.768 -07 000000480 INF: Y Motor: After move to 61.572609, error = -0.008644, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:20:28.768 -07 000000480 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:20:28.768 -07 000000480 INF: Y Motor: Moved to 61.5640 after 2583 ms (table move)
17-03-17 22:20:28.768 -07 000000501 INF: Z Motor: EndOfMoveAbsStepped: target = -0.178375 mm (DAC = 38966)
17-03-17 22:20:28.768 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:28.778 -07 000000486 INF: FPGA: Recv ZSGSRD 37064
17-03-17 22:20:28.778 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-17 22:20:28.778 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:28.778 -07 000000448 INF: FPGA: Recv ZSGSRD 37065
17-03-17 22:20:28.788 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:20:28.788 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:28.788 -07 000000480 INF: FPGA: Recv ZSGSRD 37056
17-03-17 22:20:28.798 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:28.798 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:28.798 -07 000000480 INF: FPGA: Recv ZSGSRD 37046
17-03-17 22:20:28.808 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:28.808 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:28.808 -07 000000459 INF: FPGA: Recv ZSGSRD 37061
17-03-17 22:20:28.818 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:28.818 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:28.818 -07 000000618 INF: FPGA: Recv ZSGSRD 37058
17-03-17 22:20:28.828 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:28.828 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:28.828 -07 000000480 INF: FPGA: Recv ZSGSRD 37063
17-03-17 22:20:28.838 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:28.838 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:28.838 -07 000000382 INF: FPGA: Recv ZSGSRD 37056
17-03-17 22:20:28.848 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:28.848 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:28.848 -07 000000623 INF: FPGA: Recv ZSGSRD 37053
17-03-17 22:20:28.858 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:28.858 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:28.858 -07 000000618 INF: FPGA: Recv ZSGSRD 37058
17-03-17 22:20:28.868 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:28.868 -07 000000501 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:20:28.868 -07 000000459 INF: FPGA: Recv ZPIEZORD 33525
17-03-17 22:20:28.878 -07 000000501 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:28.878 -07 000000501 INF: Z Motor: Piezo is near 51.6 V (nominally 0 to 100 V), expect near 59.5 V, since DAC is at 5.946 V. Piezo Error = -7.8 V.
17-03-17 22:20:28.878 -07 000000501 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.4 um, Read 10 ADC samples: Avg = 37058 (-177.5 uncal um), Error = 0.9 uncal um, Median = 37058 (-177.5 uncal um), StdDev = 6 (0.0 uncal um), Range = 19 (0.1 uncal um), Min = 37046 (-177.4 uncal um), Max = 37065 (-177.5 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 12 (0.1 uncal um)
17-03-17 22:20:28.878 -07 000000501 INF: Z Motor: ADC noise = 12, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37058, posNoise = 7, negNoise = 12
17-03-17 22:20:28.878 -07 000000501 INF: Z Motor: After move to -0.178375, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:20:28.878 -07 000000501 INF: Z Motor: Settle wait time = 2039 ms, measure time = 102 ms (allowed 150 ms), total time = 2141 ms
17-03-17 22:20:28.878 -07 000000501 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 22:20:28.928 -07 000000501 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 3745 ms
17-03-17 22:20:28.928 -07 000000501 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:20:28.928 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:20:28.928 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:20:28.928 -07 000000486 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:20:28.928 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:20:28.928 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:20:28.928 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:20:28.928 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:20:28.928 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:20:28.938 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:20:28.938 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:20:28.938 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 22:20:28.938 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 22:20:28.948 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:20:28.988 -07 000000480 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:20:29.188 -07 000000480 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:20:29.188 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:20:29.188 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:20:29.198 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1406045800, 0x0, 559484976) start.
17-03-17 22:20:29.228 -07 000000623 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:20:29.228 -07 000000501 INF: FPGA: Recv CAMSNAP
17-03-17 22:20:29.228 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 284 ms overall
17-03-17 22:20:29.318 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1406045800, 0x0, 559484976) end. Duration was 121 ms.
17-03-17 22:20:29.318 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:20:29.318 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:20:29.318 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 124 ms.
17-03-17 22:20:29.428 -07 000000618 INF: Autofocus start
17-03-17 22:20:29.428 -07 000000618 INF: MeasureProfile start
17-03-17 22:20:29.428 -07 000000448 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:20:29.428 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:20:29.438 -07 000000448 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 22:20:29.438 -07 000000448 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:20:29.438 -07 000000618 INF: MeasureProfile done
17-03-17 22:20:29.438 -07 000000618 INF: X=16  Z correction [um]=0.01042744
17-03-17 22:20:29.438 -07 000000618 INF: Autofocus finished
17-03-17 22:20:29.638 -07 000000501 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:20:29.638 -07 000000448 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:20:29.638 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.56396484375, Z-position -0.178391805560512. ----------
17-03-17 22:20:29.638 -07 000000610 INF: Cycle	62	Tile	3	Exposure Settings		A	450	G	216	T	216	C	450
17-03-17 22:20:29.648 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37481, sync = True, waitForSettling = True)
17-03-17 22:20:29.648 -07 000000610 INF: Z Motor: Moving to -0.171577 mm, started at -0.178392 mm, distance = 6.81 um
17-03-17 22:20:29.648 -07 000000610 INF: FPGA: Xmit ZDACW 37481\n [Z Motor]
17-03-17 22:20:29.648 -07 000000480 INF: FPGA: Recv ZDACW
17-03-17 22:20:29.658 -07 000000610 INF: FPGA: 'ZDACW 37481' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:20:29.658 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:20:29.658 -07 000000459 INF: FPGA: Recv ZDACR 37481
17-03-17 22:20:29.668 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:29.668 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:20:29.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:29.818 -07 000000382 INF: FPGA: Recv ZSGSRD 35995
17-03-17 22:20:29.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:20:29.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:29.828 -07 000000486 INF: FPGA: Recv ZSGSRD 36001
17-03-17 22:20:29.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:29.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:29.838 -07 000000382 INF: FPGA: Recv ZSGSRD 35995
17-03-17 22:20:29.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:29.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:29.848 -07 000000382 INF: FPGA: Recv ZSGSRD 35998
17-03-17 22:20:29.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:29.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:29.858 -07 000000458 INF: FPGA: Recv ZSGSRD 36003
17-03-17 22:20:29.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:29.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:29.868 -07 000000458 INF: FPGA: Recv ZSGSRD 36008
17-03-17 22:20:29.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:29.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:29.878 -07 000000458 INF: FPGA: Recv ZSGSRD 36002
17-03-17 22:20:29.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:29.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:29.888 -07 000000458 INF: FPGA: Recv ZSGSRD 36002
17-03-17 22:20:29.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:29.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:29.898 -07 000000458 INF: FPGA: Recv ZSGSRD 35997
17-03-17 22:20:29.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:29.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:29.908 -07 000000458 INF: FPGA: Recv ZSGSRD 36001
17-03-17 22:20:29.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:29.918 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:20:29.918 -07 000000458 INF: FPGA: Recv ZPIEZORD 32056
17-03-17 22:20:29.928 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:29.928 -07 000000610 INF: Z Motor: Piezo is near 48.5 V (nominally 0 to 100 V), expect near 57.2 V, since DAC is at 5.719 V. Piezo Error = -8.7 V.
17-03-17 22:20:29.928 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.6 um, Read 10 ADC samples: Avg = 36000 (-170.7 uncal um), Error = 0.9 uncal um, Median = 36001 (-170.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35995 (-170.7 uncal um), Max = 36008 (-170.8 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 22:20:29.928 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36000, posNoise = 8, negNoise = 5
17-03-17 22:20:29.928 -07 000000610 INF: Z Motor: After move to -0.171577, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:20:29.928 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 22:20:29.928 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:20:29.928 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:20:29.928 -07 000000458 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:20:29.928 -07 000000458 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:20:29.938 -07 000000458 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:20:29.938 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:20:29.938 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:20:29.938 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:20:29.938 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 22:20:29.938 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:20:29.958 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 22:20:29.958 -07 000000458 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 22:20:29.958 -07 000000458 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:20:29.958 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:20:29.958 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 22:20:29.958 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:20:29.958 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:20:29.958 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:20:29.968 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 22:20:29.968 -07 000000458 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 22:20:29.968 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 450 450 216 216 37657 150\n [Camera]
17-03-17 22:20:30.168 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:20:30.628 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 644
17-03-17 22:20:30.628 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 644
17-03-17 22:20:30.628 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:20:30.628 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:20:30.628 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 22:20:30.998 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 22:20:30.998 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 22:20:30.998 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:20:31.008 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 22:20:31.008 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 22:20:31.018 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 644
17-03-17 22:20:31.018 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37657 835
17-03-17 22:20:31.018 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP turning grn on 985
17-03-17 22:20:31.018 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 644
17-03-17 22:20:31.018 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:20:31.018 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:20:31.018 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 22:20:31.388 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 373 ms.
17-03-17 22:20:31.388 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 22:20:31.388 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:20:31.398 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:20:31.398 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-17 22:20:31.408 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1201
17-03-17 22:20:31.408 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1201
17-03-17 22:20:31.408 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP 1394
17-03-17 22:20:31.408 -07 000000458 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:20:31.408 -07 000000610 INF: FPGA: 'CAMDBLSNAP 450 450 216 216 37657 150' command took 2 ms to send, 1426 ms to get response, and 1438 ms overall
17-03-17 22:20:31.408 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1201
17-03-17 22:20:31.408 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1201
17-03-17 22:20:31.408 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:20:31.408 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:20:31.408 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-17 22:20:31.508 -07 000000610 INF: Skipping AutoFocus in Tile 4: adopting Best-Z from the cache: -0.171920
17-03-17 22:20:31.508 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.17192 mm
17-03-17 22:20:31.508 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:20:31.798 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 388 ms.
17-03-17 22:20:31.798 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 22:20:31.798 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:20:31.808 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 22:20:31.808 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 22:20:31.818 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:20:31.818 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:20:31.818 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 22:20:31.818 -07 000000618 INF: Z Motor: Entering MoveAbsStepped (DAC = 37556, sync = True, waitForSettling = False)
17-03-17 22:20:31.818 -07 000000618 INF: Z Motor: Moving to -0.171920 mm, started at -0.171595 mm, distance = -0.33 um
17-03-17 22:20:31.818 -07 000000482 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-17 22:20:31.818 -07 000000482 INF: Y Motor: Moving to 62.4026 mm, started at 61.5640 mm, delta = 0.8386 mm
17-03-17 22:20:31.818 -07 000000618 INF: FPGA: Xmit ZDACW 37556\n [Z Motor]
17-03-17 22:20:31.818 -07 000000551 INF: FPGA: Recv ZDACW
17-03-17 22:20:31.828 -07 000000618 INF: FPGA: 'ZDACW 37556' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 22:20:31.828 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:20:31.828 -07 000000623 INF: FPGA: Recv YRDPOS 126083
17-03-17 22:20:31.838 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 22:20:31.838 -07 000000482 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:20:31.838 -07 000000482 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:20:31.838 -07 000000482 INF: Y Motor: Moving 1342 steps-18
17-03-17 22:20:31.838 -07 000000618 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:20:31.838 -07 000000551 INF: FPGA: Recv ZDACR 37556
17-03-17 22:20:31.848 -07 000000618 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:20:31.848 -07 000000618 INF: Z Motor: MoveAbsStepped took 26 ms (did NOT wait for settling yet))
17-03-17 22:20:31.848 -07 000000482 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:20:31.958 -07 000000459 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:20:31.968 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 61. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=992, R2=1018, Total=2010. Warn if over 250 bubbles per interval.
17-03-17 22:20:32.198 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 376 ms.
17-03-17 22:20:32.198 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 22:20:32.198 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:20:32.198 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:20:32.198 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 22:20:32.228 -07 000000551 INF: FPGA: Recv YMVTILE
17-03-17 22:20:32.228 -07 000000482 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 389 ms overall
17-03-17 22:20:32.268 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:20:32.268 -07 000000618 INF: FPGA: Recv YRDPOS 127786
17-03-17 22:20:32.278 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:32.278 -07 000000482 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:20:32.278 -07 000000482 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-17 22:20:32.278 -07 000000482 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 390 ms, distance = 0.839 mm, average velocity = 2.150 mm/sec
17-03-17 22:20:33.098 -07 000000459 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 62, FrontChillerTemperature: 3.990831,
17-03-17 22:20:33.228 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:20:33.228 -07 000000486 INF: FPGA: Recv YRDPOS 127786
17-03-17 22:20:33.238 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:33.238 -07 000000482 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:20:33.258 -07 000000482 INF: Y Motor: After move to 62.402607, error = -0.007099, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:20:33.258 -07 000000482 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:20:33.258 -07 000000482 INF: Y Motor: Moved to 62.3955 after 1441 ms (table move)
17-03-17 22:20:33.258 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.171920 mm (DAC = 37556)
17-03-17 22:20:33.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:33.268 -07 000000501 INF: FPGA: Recv ZSGSRD 36047
17-03-17 22:20:33.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 22:20:33.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:33.268 -07 000000623 INF: FPGA: Recv ZSGSRD 36060
17-03-17 22:20:33.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:20:33.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:33.278 -07 000000459 INF: FPGA: Recv ZSGSRD 36047
17-03-17 22:20:33.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:33.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:33.288 -07 000000486 INF: FPGA: Recv ZSGSRD 36043
17-03-17 22:20:33.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:33.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:33.298 -07 000000501 INF: FPGA: Recv ZSGSRD 36053
17-03-17 22:20:33.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:33.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:33.308 -07 000000623 INF: FPGA: Recv ZSGSRD 36051
17-03-17 22:20:33.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:33.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:33.318 -07 000000458 INF: FPGA: Recv ZSGSRD 36055
17-03-17 22:20:33.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:33.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:33.328 -07 000000486 INF: FPGA: Recv ZSGSRD 36057
17-03-17 22:20:33.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:33.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:33.338 -07 000000501 INF: FPGA: Recv ZSGSRD 36054
17-03-17 22:20:33.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:33.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:33.348 -07 000000482 INF: FPGA: Recv ZSGSRD 36057
17-03-17 22:20:33.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:33.358 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:20:33.358 -07 000000501 INF: FPGA: Recv ZPIEZORD 32125
17-03-17 22:20:33.368 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:33.368 -07 000000610 INF: Z Motor: Piezo is near 48.6 V (nominally 0 to 100 V), expect near 57.3 V, since DAC is at 5.731 V. Piezo Error = -8.7 V.
17-03-17 22:20:33.368 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.9 um, Read 10 ADC samples: Avg = 36052 (-171.0 uncal um), Error = 0.9 uncal um, Median = 36054 (-171.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 36043 (-171.0 uncal um), Max = 36060 (-171.1 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 22:20:33.368 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36052, posNoise = 8, negNoise = 9
17-03-17 22:20:33.368 -07 000000610 INF: Z Motor: After move to -0.171920, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:20:33.368 -07 000000610 INF: Z Motor: Settle wait time = 1444 ms, measure time = 102 ms (allowed 150 ms), total time = 1546 ms
17-03-17 22:20:33.368 -07 000000610 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 22:20:33.418 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1908 ms
17-03-17 22:20:33.418 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:20:33.418 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.3955078125, Z-position -0.171929048145901. ----------
17-03-17 22:20:33.418 -07 000000610 INF: Cycle	62	Tile	4	Exposure Settings		A	450	G	216	T	216	C	450
17-03-17 22:20:33.418 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37379, sync = True, waitForSettling = True)
17-03-17 22:20:33.418 -07 000000610 INF: Z Motor: Moving to -0.171110 mm, started at -0.171929 mm, distance = 0.82 um
17-03-17 22:20:33.418 -07 000000610 INF: FPGA: Xmit ZDACW 37379\n [Z Motor]
17-03-17 22:20:34.028 -07 000000551 INF: FPGA: Recv ZDACW
17-03-17 22:20:34.028 -07 000000610 INF: FPGA: 'ZDACW 37379' command took 0 ms to send, 600 ms to get response, and 604 ms overall
17-03-17 22:20:34.028 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:20:34.028 -07 000000482 INF: FPGA: Recv ZDACR 37379
17-03-17 22:20:34.038 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:34.038 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:20:34.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:34.188 -07 000000482 INF: FPGA: Recv ZSGSRD 35928
17-03-17 22:20:34.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:20:34.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:34.198 -07 000000462 INF: FPGA: Recv ZSGSRD 35920
17-03-17 22:20:34.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:34.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:34.208 -07 000000458 INF: FPGA: Recv ZSGSRD 35924
17-03-17 22:20:34.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:34.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:34.218 -07 000000501 INF: FPGA: Recv ZSGSRD 35923
17-03-17 22:20:34.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:34.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:34.228 -07 000000482 INF: FPGA: Recv ZSGSRD 35931
17-03-17 22:20:34.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:34.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:34.238 -07 000000501 INF: FPGA: Recv ZSGSRD 35925
17-03-17 22:20:34.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:34.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:34.248 -07 000000482 INF: FPGA: Recv ZSGSRD 35923
17-03-17 22:20:34.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:34.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:34.258 -07 000000551 INF: FPGA: Recv ZSGSRD 35927
17-03-17 22:20:34.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:34.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:34.268 -07 000000458 INF: FPGA: Recv ZSGSRD 35925
17-03-17 22:20:34.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:34.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:34.278 -07 000000459 INF: FPGA: Recv ZSGSRD 35925
17-03-17 22:20:34.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:34.288 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:20:34.288 -07 000000458 INF: FPGA: Recv ZPIEZORD 31986
17-03-17 22:20:34.298 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:34.298 -07 000000610 INF: Z Motor: Piezo is near 48.3 V (nominally 0 to 100 V), expect near 57.0 V, since DAC is at 5.704 V. Piezo Error = -8.7 V.
17-03-17 22:20:34.298 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.1 um, Read 10 ADC samples: Avg = 35925 (-170.2 uncal um), Error = 0.9 uncal um, Median = 35925 (-170.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35920 (-170.2 uncal um), Max = 35931 (-170.3 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 22:20:34.298 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35925, posNoise = 6, negNoise = 5
17-03-17 22:20:34.298 -07 000000610 INF: Z Motor: After move to -0.171110, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:20:34.298 -07 000000610 INF: Z Motor: MoveAbsStepped took 875 ms)
17-03-17 22:20:34.298 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:20:34.298 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:20:34.298 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:20:34.298 -07 000000458 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:20:34.298 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:20:34.298 -07 000000551 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:20:34.298 -07 000000459 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:20:34.298 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:20:34.298 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:20:34.298 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:20:34.298 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:20:34.298 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:20:34.308 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:20:34.308 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:20:34.308 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 22:20:34.308 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:20:34.318 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 22:20:34.318 -07 000000458 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 22:20:34.318 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 22:20:34.318 -07 000000459 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 22:20:34.328 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 450 450 216 216 37556 150\n [Camera]
17-03-17 22:20:34.528 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning red on 193
17-03-17 22:20:34.968 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 642
17-03-17 22:20:34.968 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 642
17-03-17 22:20:34.978 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:20:34.978 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:20:34.978 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start.
17-03-17 22:20:34.978 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 642
17-03-17 22:20:34.978 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 642
17-03-17 22:20:34.978 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:20:34.978 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:20:34.978 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) start.
17-03-17 22:20:35.168 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37556 835
17-03-17 22:20:35.318 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning grn on 985
17-03-17 22:20:35.358 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) end. Duration was 381 ms.
17-03-17 22:20:35.358 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-17 22:20:35.358 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:20:35.358 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 385 ms.
17-03-17 22:20:35.358 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 22:20:35.358 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:20:35.368 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:20:35.368 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:20:35.368 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 22:20:35.368 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 22:20:35.528 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1201
17-03-17 22:20:35.528 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1201
17-03-17 22:20:35.528 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:20:35.528 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:20:35.538 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-17 22:20:35.538 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1201
17-03-17 22:20:35.538 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1201
17-03-17 22:20:35.538 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:20:35.538 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:20:35.538 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-17 22:20:35.728 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP 1394
17-03-17 22:20:35.728 -07 000000551 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:20:35.728 -07 000000610 INF: FPGA: 'CAMDBLSNAP 450 450 216 216 37556 150' command took 2 ms to send, 1390 ms to get response, and 1400 ms overall
17-03-17 22:20:35.728 -07 000000610 INF: Skipping AutoFocus in Tile 5: adopting Best-Z from the cache: -0.171706
17-03-17 22:20:35.728 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.17171 mm
17-03-17 22:20:35.728 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:20:35.728 -07 000000462 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-17 22:20:35.728 -07 000000462 INF: Y Motor: Moving to 63.2326 mm, started at 62.3955 mm, delta = 0.8371 mm
17-03-17 22:20:35.728 -07 000000459 INF: Z Motor: Entering MoveAbsStepped (DAC = 37509, sync = True, waitForSettling = False)
17-03-17 22:20:35.728 -07 000000459 INF: Z Motor: Moving to -0.171705 mm, started at -0.171113 mm, distance = -0.59 um
17-03-17 22:20:35.728 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:20:35.728 -07 000000551 INF: FPGA: Recv YRDPOS 127786
17-03-17 22:20:35.738 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 22:20:35.738 -07 000000462 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:20:35.738 -07 000000462 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:20:35.738 -07 000000462 INF: Y Motor: Moving 1339 steps-15
17-03-17 22:20:35.738 -07 000000462 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:20:35.748 -07 000000459 INF: FPGA: Xmit ZDACW 37509\n [Z Motor]
17-03-17 22:20:35.748 -07 000000551 INF: FPGA: Recv ZDACW
17-03-17 22:20:35.758 -07 000000459 INF: FPGA: 'ZDACW 37509' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-17 22:20:35.758 -07 000000459 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:20:35.758 -07 000000551 INF: FPGA: Recv ZDACR 37509
17-03-17 22:20:35.768 -07 000000459 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:35.768 -07 000000459 INF: Z Motor: MoveAbsStepped took 34 ms (did NOT wait for settling yet))
17-03-17 22:20:35.938 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 404 ms.
17-03-17 22:20:35.938 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 22:20:35.938 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:20:35.938 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 403 ms.
17-03-17 22:20:35.938 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-17 22:20:35.938 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:20:35.938 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:20:35.938 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-17 22:20:35.948 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:20:35.948 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-17 22:20:36.108 -07 000000618 INF: FPGA: Recv YMVTILE
17-03-17 22:20:36.108 -07 000000462 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 378 ms overall
17-03-17 22:20:36.148 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:20:36.158 -07 000000480 INF: FPGA: Recv YRDPOS 129483
17-03-17 22:20:36.158 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 22:20:36.158 -07 000000462 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:20:36.158 -07 000000462 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-17 22:20:36.158 -07 000000462 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.837 mm, average velocity = 2.215 mm/sec
17-03-17 22:20:36.958 -07 000000482 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:20:36.968 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 61. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=992, R2=1018, Total=2010. Warn if over 250 bubbles per interval.
17-03-17 22:20:37.108 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:20:37.108 -07 000000382 INF: FPGA: Recv YRDPOS 129484
17-03-17 22:20:37.118 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:37.118 -07 000000462 INF: Y Motor: Encoder = 129484 = motor step 101159.4 = 63.2246 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:20:37.138 -07 000000462 INF: Y Motor: After move to 63.232609, error = -0.007999, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:20:37.138 -07 000000462 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 22:20:37.138 -07 000000462 INF: Y Motor: Moved to 63.2246 after 1410 ms (table move)
17-03-17 22:20:37.138 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.171705 mm (DAC = 37509)
17-03-17 22:20:37.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:37.148 -07 000000448 INF: FPGA: Recv ZSGSRD 36024
17-03-17 22:20:37.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 22:20:37.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:37.148 -07 000000618 INF: FPGA: Recv ZSGSRD 36017
17-03-17 22:20:37.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:20:37.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:37.158 -07 000000448 INF: FPGA: Recv ZSGSRD 36012
17-03-17 22:20:37.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:37.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:37.168 -07 000000480 INF: FPGA: Recv ZSGSRD 36028
17-03-17 22:20:37.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:37.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:37.178 -07 000000462 INF: FPGA: Recv ZSGSRD 36026
17-03-17 22:20:37.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:37.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:37.188 -07 000000482 INF: FPGA: Recv ZSGSRD 36022
17-03-17 22:20:37.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:37.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:37.198 -07 000000448 INF: FPGA: Recv ZSGSRD 36020
17-03-17 22:20:37.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:37.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:37.208 -07 000000551 INF: FPGA: Recv ZSGSRD 36015
17-03-17 22:20:37.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:37.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:37.218 -07 000000448 INF: FPGA: Recv ZSGSRD 36015
17-03-17 22:20:37.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:37.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:37.228 -07 000000551 INF: FPGA: Recv ZSGSRD 36018
17-03-17 22:20:37.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:37.238 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:20:37.238 -07 000000482 INF: FPGA: Recv ZPIEZORD 32112
17-03-17 22:20:37.248 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:37.248 -07 000000610 INF: Z Motor: Piezo is near 48.6 V (nominally 0 to 100 V), expect near 57.2 V, since DAC is at 5.724 V. Piezo Error = -8.6 V.
17-03-17 22:20:37.248 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.7 um, Read 10 ADC samples: Avg = 36020 (-170.8 uncal um), Error = 0.9 uncal um, Median = 36019 (-170.8 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 36012 (-170.8 uncal um), Max = 36028 (-170.9 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 22:20:37.248 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36020, posNoise = 8, negNoise = 8
17-03-17 22:20:37.248 -07 000000610 INF: Z Motor: After move to -0.171705, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:20:37.248 -07 000000610 INF: Z Motor: Settle wait time = 1412 ms, measure time = 103 ms (allowed 150 ms), total time = 1515 ms
17-03-17 22:20:37.248 -07 000000610 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 22:20:37.298 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1566 ms
17-03-17 22:20:37.298 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:20:37.298 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.224609375, Z-position -0.171723473357365. ----------
17-03-17 22:20:37.298 -07 000000610 INF: Cycle	62	Tile	5	Exposure Settings		A	450	G	216	T	216	C	450
17-03-17 22:20:37.298 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37333, sync = True, waitForSettling = True)
17-03-17 22:20:37.298 -07 000000610 INF: Z Motor: Moving to -0.170900 mm, started at -0.171723 mm, distance = 0.82 um
17-03-17 22:20:37.298 -07 000000610 INF: FPGA: Xmit ZDACW 37333\n [Z Motor]
17-03-17 22:20:37.308 -07 000000459 INF: FPGA: Recv ZDACW
17-03-17 22:20:37.308 -07 000000610 INF: FPGA: 'ZDACW 37333' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 22:20:37.308 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:20:37.308 -07 000000618 INF: FPGA: Recv ZDACR 37333
17-03-17 22:20:37.318 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:37.318 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:20:37.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:37.468 -07 000000482 INF: FPGA: Recv ZSGSRD 35895
17-03-17 22:20:37.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:20:37.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:37.478 -07 000000618 INF: FPGA: Recv ZSGSRD 35895
17-03-17 22:20:37.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:37.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:37.488 -07 000000480 INF: FPGA: Recv ZSGSRD 35895
17-03-17 22:20:37.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:37.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:37.498 -07 000000501 INF: FPGA: Recv ZSGSRD 35898
17-03-17 22:20:37.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:37.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:37.508 -07 000000448 INF: FPGA: Recv ZSGSRD 35894
17-03-17 22:20:37.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:37.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:37.518 -07 000000462 INF: FPGA: Recv ZSGSRD 35896
17-03-17 22:20:37.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:37.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:37.528 -07 000000618 INF: FPGA: Recv ZSGSRD 35892
17-03-17 22:20:37.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:37.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:37.538 -07 000000501 INF: FPGA: Recv ZSGSRD 35888
17-03-17 22:20:37.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:37.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:37.548 -07 000000618 INF: FPGA: Recv ZSGSRD 35896
17-03-17 22:20:37.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:37.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:37.558 -07 000000551 INF: FPGA: Recv ZSGSRD 35893
17-03-17 22:20:37.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:37.568 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:20:37.568 -07 000000618 INF: FPGA: Recv ZPIEZORD 31931
17-03-17 22:20:37.578 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:37.578 -07 000000610 INF: Z Motor: Piezo is near 48.2 V (nominally 0 to 100 V), expect near 57.0 V, since DAC is at 5.697 V. Piezo Error = -8.8 V.
17-03-17 22:20:37.578 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.9 um, Read 10 ADC samples: Avg = 35894 (-170.0 uncal um), Error = 0.9 uncal um, Median = 35895 (-170.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35888 (-170.0 uncal um), Max = 35898 (-170.1 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 22:20:37.578 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35894, posNoise = 4, negNoise = 6
17-03-17 22:20:37.578 -07 000000610 INF: Z Motor: After move to -0.170900, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:20:37.578 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-17 22:20:37.578 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:20:37.578 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:20:37.578 -07 000000551 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:20:37.578 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:20:37.578 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:20:37.578 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:20:37.578 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:20:37.578 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:20:37.578 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-17 22:20:37.578 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:20:37.578 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 22:20:37.578 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:20:37.588 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:20:37.588 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:20:37.588 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:20:37.588 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:20:37.598 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 22:20:37.598 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 24 ms.
17-03-17 22:20:37.598 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 22:20:37.598 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 24 ms.
17-03-17 22:20:37.608 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 450 450 216 216 37509 150\n [Camera]
17-03-17 22:20:37.808 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:20:38.258 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 642
17-03-17 22:20:38.258 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 642
17-03-17 22:20:38.258 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:20:38.258 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:20:38.258 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) start.
17-03-17 22:20:38.258 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 642
17-03-17 22:20:38.258 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 642
17-03-17 22:20:38.258 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:20:38.258 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:20:38.258 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-17 22:20:38.448 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37509 835
17-03-17 22:20:38.458 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 62, FrontChillerTemperature: 3.996267,
17-03-17 22:20:38.598 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP turning grn on 985
17-03-17 22:20:38.628 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 22:20:38.638 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-17 22:20:38.638 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:20:38.638 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 22:20:38.638 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-17 22:20:38.638 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:20:38.638 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 22:20:38.638 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 22:20:38.638 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 22:20:38.648 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 22:20:38.818 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1201
17-03-17 22:20:38.818 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1201
17-03-17 22:20:38.818 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:20:38.818 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:20:38.818 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) start.
17-03-17 22:20:38.818 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1201
17-03-17 22:20:38.818 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1201
17-03-17 22:20:38.818 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:20:38.818 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:20:38.818 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 2620985504, 0x0, 418435064) start.
17-03-17 22:20:39.008 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP 1393
17-03-17 22:20:39.008 -07 000000501 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:20:39.008 -07 000000610 INF: FPGA: 'CAMDBLSNAP 450 450 216 216 37509 150' command took 2 ms to send, 1392 ms to get response, and 1400 ms overall
17-03-17 22:20:39.008 -07 000000610 INF: Skipping AutoFocus in Tile 6: adopting Best-Z from the cache: -0.171296
17-03-17 22:20:39.008 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.17130 mm
17-03-17 22:20:39.008 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:20:39.008 -07 000000448 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-17 22:20:39.008 -07 000000448 INF: Y Motor: Moving to 64.0626 mm, started at 63.2246 mm, delta = 0.8380 mm
17-03-17 22:20:39.008 -07 000000480 INF: Z Motor: Entering MoveAbsStepped (DAC = 37419, sync = True, waitForSettling = False)
17-03-17 22:20:39.008 -07 000000480 INF: Z Motor: Moving to -0.171293 mm, started at -0.170914 mm, distance = -0.38 um
17-03-17 22:20:39.008 -07 000000448 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:20:39.018 -07 000000480 INF: FPGA: Xmit ZDACW 37419\n [Z Motor]
17-03-17 22:20:39.018 -07 000000501 INF: FPGA: Recv YRDPOS 129484
17-03-17 22:20:39.018 -07 000000448 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 22:20:39.018 -07 000000448 INF: Y Motor: Encoder = 129484 = motor step 101159.4 = 63.2246 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:20:39.018 -07 000000448 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:20:39.018 -07 000000448 INF: Y Motor: Moving 1341 steps-17
17-03-17 22:20:39.018 -07 000000482 INF: FPGA: Recv ZDACW
17-03-17 22:20:39.028 -07 000000480 INF: FPGA: 'ZDACW 37419' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 22:20:39.028 -07 000000448 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:20:39.038 -07 000000480 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:20:39.038 -07 000000462 INF: FPGA: Recv ZDACR 37419
17-03-17 22:20:39.048 -07 000000480 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:20:39.048 -07 000000480 INF: Z Motor: MoveAbsStepped took 32 ms (did NOT wait for settling yet))
17-03-17 22:20:39.198 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) end. Duration was 382 ms.
17-03-17 22:20:39.198 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 22:20:39.198 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:20:39.198 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 2620985504, 0x0, 418435064) end. Duration was 381 ms.
17-03-17 22:20:39.198 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-17 22:20:39.198 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:20:39.198 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:20:39.198 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 22:20:39.208 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:20:39.208 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 22:20:39.398 -07 000000462 INF: FPGA: Recv YMVTILE
17-03-17 22:20:39.398 -07 000000448 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 386 ms overall
17-03-17 22:20:39.448 -07 000000448 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:20:39.448 -07 000000480 INF: FPGA: Recv YRDPOS 131188
17-03-17 22:20:39.458 -07 000000448 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:39.458 -07 000000448 INF: Y Motor: Encoder = 131188 = motor step 102490.6 = 64.0566 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:20:39.458 -07 000000448 INF: Y Motor: Position error before settling (table move) = -12 encoder counts (-0.006 mm)
17-03-17 22:20:39.458 -07 000000448 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 386 ms, distance = 0.838 mm, average velocity = 2.171 mm/sec
17-03-17 22:20:40.408 -07 000000448 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:20:40.408 -07 000000551 INF: FPGA: Recv YRDPOS 131189
17-03-17 22:20:40.418 -07 000000448 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:20:40.418 -07 000000448 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:20:40.438 -07 000000448 INF: Y Motor: After move to 64.062607, error = -0.005478, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:20:40.438 -07 000000448 INF: Y Motor: Position error after settling (table move) = -11 encoder counts (-0.005 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 22:20:40.438 -07 000000448 INF: Y Motor: Moved to 64.0571 after 1423 ms (table move)
17-03-17 22:20:40.438 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.171293 mm (DAC = 37419)
17-03-17 22:20:40.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:40.438 -07 000000551 INF: FPGA: Recv ZSGSRD 35955
17-03-17 22:20:40.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 22:20:40.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:40.448 -07 000000462 INF: FPGA: Recv ZSGSRD 35954
17-03-17 22:20:40.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:40.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:40.458 -07 000000480 INF: FPGA: Recv ZSGSRD 35957
17-03-17 22:20:40.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:40.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:40.468 -07 000000448 INF: FPGA: Recv ZSGSRD 35956
17-03-17 22:20:40.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:40.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:40.478 -07 000000462 INF: FPGA: Recv ZSGSRD 35951
17-03-17 22:20:40.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:40.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:40.488 -07 000000459 INF: FPGA: Recv ZSGSRD 35954
17-03-17 22:20:40.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:40.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:40.498 -07 000000448 INF: FPGA: Recv ZSGSRD 35950
17-03-17 22:20:40.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:40.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:40.508 -07 000000448 INF: FPGA: Recv ZSGSRD 35954
17-03-17 22:20:40.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:40.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:40.518 -07 000000448 INF: FPGA: Recv ZSGSRD 35948
17-03-17 22:20:40.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:40.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:40.528 -07 000000459 INF: FPGA: Recv ZSGSRD 35957
17-03-17 22:20:40.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:40.538 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:20:40.538 -07 000000462 INF: FPGA: Recv ZPIEZORD 32049
17-03-17 22:20:40.548 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:40.548 -07 000000610 INF: Z Motor: Piezo is near 48.5 V (nominally 0 to 100 V), expect near 57.1 V, since DAC is at 5.710 V. Piezo Error = -8.6 V.
17-03-17 22:20:40.548 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.3 um, Read 10 ADC samples: Avg = 35954 (-170.4 uncal um), Error = 0.9 uncal um, Median = 35954 (-170.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35948 (-170.4 uncal um), Max = 35957 (-170.4 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 22:20:40.548 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35954, posNoise = 3, negNoise = 6
17-03-17 22:20:40.548 -07 000000610 INF: Z Motor: After move to -0.171293, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:20:40.548 -07 000000610 INF: Z Motor: Settle wait time = 1426 ms, measure time = 106 ms (allowed 150 ms), total time = 1532 ms
17-03-17 22:20:40.548 -07 000000610 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 22:20:40.598 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1584 ms
17-03-17 22:20:40.598 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:20:40.598 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.05712890625, Z-position -0.171299475356008. ----------
17-03-17 22:20:40.598 -07 000000610 INF: Cycle	62	Tile	6	Exposure Settings		A	450	G	216	T	216	C	450
17-03-17 22:20:40.598 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37243, sync = True, waitForSettling = True)
17-03-17 22:20:40.598 -07 000000610 INF: Z Motor: Moving to -0.170488 mm, started at -0.171299 mm, distance = 0.81 um
17-03-17 22:20:40.598 -07 000000610 INF: FPGA: Xmit ZDACW 37243\n [Z Motor]
17-03-17 22:20:40.598 -07 000000480 INF: FPGA: Recv ZDACW
17-03-17 22:20:40.608 -07 000000610 INF: FPGA: 'ZDACW 37243' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 22:20:40.608 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:20:40.608 -07 000000480 INF: FPGA: Recv ZDACR 37243
17-03-17 22:20:40.618 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:40.618 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:20:40.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:40.768 -07 000000459 INF: FPGA: Recv ZSGSRD 35837
17-03-17 22:20:40.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:20:40.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:40.778 -07 000000448 INF: FPGA: Recv ZSGSRD 35834
17-03-17 22:20:40.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:40.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:40.788 -07 000000462 INF: FPGA: Recv ZSGSRD 35830
17-03-17 22:20:40.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:40.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:40.798 -07 000000462 INF: FPGA: Recv ZSGSRD 35822
17-03-17 22:20:40.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:40.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:40.808 -07 000000448 INF: FPGA: Recv ZSGSRD 35827
17-03-17 22:20:40.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:40.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:40.818 -07 000000623 INF: FPGA: Recv ZSGSRD 35833
17-03-17 22:20:40.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:40.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:40.828 -07 000000462 INF: FPGA: Recv ZSGSRD 35829
17-03-17 22:20:40.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:40.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:40.838 -07 000000448 INF: FPGA: Recv ZSGSRD 35829
17-03-17 22:20:40.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:40.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:40.848 -07 000000480 INF: FPGA: Recv ZSGSRD 35831
17-03-17 22:20:40.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:40.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:40.858 -07 000000551 INF: FPGA: Recv ZSGSRD 35831
17-03-17 22:20:40.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:40.868 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:20:40.868 -07 000000462 INF: FPGA: Recv ZPIEZORD 31895
17-03-17 22:20:40.878 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:40.878 -07 000000610 INF: Z Motor: Piezo is near 48.1 V (nominally 0 to 100 V), expect near 56.8 V, since DAC is at 5.683 V. Piezo Error = -8.7 V.
17-03-17 22:20:40.878 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.5 um, Read 10 ADC samples: Avg = 35830 (-169.6 uncal um), Error = 0.9 uncal um, Median = 35830 (-169.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 35822 (-169.6 uncal um), Max = 35837 (-169.7 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 22:20:40.878 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35830, posNoise = 7, negNoise = 8
17-03-17 22:20:40.878 -07 000000610 INF: Z Motor: After move to -0.170488, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:20:40.878 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 22:20:40.878 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:20:40.878 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:20:40.878 -07 000000459 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:20:40.878 -07 000000623 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:20:40.878 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:20:40.878 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:20:40.878 -07 000000551 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:20:40.878 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:20:40.878 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:20:40.878 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:20:40.878 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:20:40.878 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:20:40.878 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:20:40.878 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:20:40.888 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 22:20:40.888 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:20:40.898 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 22:20:40.898 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 22:20:40.898 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 22:20:40.898 -07 000000551 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 22:20:40.908 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 450 450 216 216 37419 150\n [Camera]
17-03-17 22:20:41.098 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:20:41.558 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 642
17-03-17 22:20:41.558 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 642
17-03-17 22:20:41.558 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:20:41.558 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:20:41.558 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) start.
17-03-17 22:20:41.558 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 642
17-03-17 22:20:41.558 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 642
17-03-17 22:20:41.558 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:20:41.558 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:20:41.558 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2719780968, 0x0, 418435064) start.
17-03-17 22:20:41.748 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37419 835
17-03-17 22:20:41.898 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP turning grn on 985
17-03-17 22:20:41.928 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2719780968, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 22:20:41.928 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-17 22:20:41.928 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:20:41.938 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) end. Duration was 378 ms.
17-03-17 22:20:41.938 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-17 22:20:41.938 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:20:41.938 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:20:41.938 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:20:41.938 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 22:20:41.948 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 22:20:41.958 -07 000000551 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:20:41.968 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 61. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=992, R2=1018, Total=2010. Warn if over 250 bubbles per interval.
17-03-17 22:20:42.108 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1201
17-03-17 22:20:42.108 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1201
17-03-17 22:20:42.108 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:20:42.108 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:20:42.108 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 2755203232, 0x0, 391868352) start.
17-03-17 22:20:42.118 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1201
17-03-17 22:20:42.118 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1201
17-03-17 22:20:42.118 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:20:42.118 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:20:42.118 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 2818576432, 0x0, 418435064) start.
17-03-17 22:20:42.308 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP 1393
17-03-17 22:20:42.308 -07 000000462 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:20:42.308 -07 000000610 INF: FPGA: 'CAMDBLSNAP 450 450 216 216 37419 150' command took 2 ms to send, 1390 ms to get response, and 1400 ms overall
17-03-17 22:20:42.308 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 22:20:42.308 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.05712890625, Z-Position -0.17050287305043. ------
17-03-17 22:20:42.308 -07 000000459 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.17696 mm
17-03-17 22:20:42.308 -07 000000459 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:20:42.308 -07 000000448 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:20:42.308 -07 000000480 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-17 22:20:42.318 -07 000000480 INF: Y Motor: Moving to 64.8926 mm, started at 64.0571 mm, delta = 0.8355 mm
17-03-17 22:20:42.318 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:20:42.318 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:20:42.318 -07 000000448 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 22:20:42.318 -07 000000458 INF: Z Motor: Entering MoveAbsStepped (DAC = 38658, sync = True, waitForSettling = False)
17-03-17 22:20:42.318 -07 000000458 INF: Z Motor: Moving to -0.176965 mm, started at -0.170503 mm, distance = -6.46 um
17-03-17 22:20:42.318 -07 000000462 INF: FPGA: Recv YRDPOS 131189
17-03-17 22:20:42.328 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:42.328 -07 000000480 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:20:42.328 -07 000000480 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:20:42.328 -07 000000480 INF: Y Motor: Moving 1337 steps-12
17-03-17 22:20:42.328 -07 000000448 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:20:42.338 -07 000000458 INF: FPGA: Xmit ZDACW 38658\n [Z Motor]
17-03-17 22:20:42.338 -07 000000623 INF: FPGA: Recv ZDACW
17-03-17 22:20:42.348 -07 000000480 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:20:42.348 -07 000000458 INF: FPGA: 'ZDACW 38658' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-17 22:20:42.358 -07 000000458 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:20:42.358 -07 000000382 INF: FPGA: Recv ZDACR 38658
17-03-17 22:20:42.368 -07 000000458 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:20:42.368 -07 000000458 INF: Z Motor: MoveAbsStepped took 48 ms (did NOT wait for settling yet))
17-03-17 22:20:42.498 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 2755203232, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 22:20:42.498 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 22:20:42.498 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:20:42.498 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 2818576432, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 22:20:42.498 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-17 22:20:42.498 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:20:42.498 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:20:42.498 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 22:20:42.498 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:20:42.508 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 22:20:42.528 -07 000000551 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:20:42.528 -07 000000448 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 193 ms to get response, and 212 ms overall
17-03-17 22:20:42.728 -07 000000486 INF: FPGA: Recv YMVTILE
17-03-17 22:20:42.728 -07 000000480 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 400 ms overall
17-03-17 22:20:42.758 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:20:42.768 -07 000000551 INF: FPGA: Recv YRDPOS 132872
17-03-17 22:20:42.768 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 22:20:42.768 -07 000000480 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:20:42.768 -07 000000480 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 22:20:42.768 -07 000000480 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 400 ms, distance = 0.835 mm, average velocity = 2.089 mm/sec
17-03-17 22:20:43.718 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:20:43.718 -07 000000623 INF: FPGA: Recv YRDPOS 132872
17-03-17 22:20:43.728 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:43.728 -07 000000480 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:20:43.748 -07 000000480 INF: Y Motor: After move to 64.892609, error = -0.013702, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:20:43.748 -07 000000480 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:20:43.748 -07 000000480 INF: Y Motor: Moved to 64.8789 after 1436 ms (table move)
17-03-17 22:20:43.748 -07 000000459 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176965 mm (DAC = 38658)
17-03-17 22:20:43.758 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:43.758 -07 000000382 INF: FPGA: Recv ZSGSRD 36837
17-03-17 22:20:43.768 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:20:43.768 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:43.768 -07 000000480 INF: FPGA: Recv ZSGSRD 36834
17-03-17 22:20:43.778 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:43.778 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:43.778 -07 000000480 INF: FPGA: Recv ZSGSRD 36835
17-03-17 22:20:43.788 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:43.788 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:43.788 -07 000000480 INF: FPGA: Recv ZSGSRD 36838
17-03-17 22:20:43.798 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:43.798 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:43.798 -07 000000480 INF: FPGA: Recv ZSGSRD 36838
17-03-17 22:20:43.808 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:43.818 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:43.818 -07 000000448 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 62, FrontChillerTemperature: 3.979922,
17-03-17 22:20:43.818 -07 000000623 INF: FPGA: Recv ZSGSRD 36836
17-03-17 22:20:43.828 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:20:43.838 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:43.838 -07 000000458 INF: FPGA: Recv ZSGSRD 36836
17-03-17 22:20:43.848 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:20:43.848 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:43.848 -07 000000462 INF: FPGA: Recv ZSGSRD 36841
17-03-17 22:20:43.858 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:20:43.868 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:43.868 -07 000000486 INF: FPGA: Recv ZSGSRD 36841
17-03-17 22:20:43.878 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:20:43.878 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:43.878 -07 000000382 INF: FPGA: Recv ZSGSRD 36840
17-03-17 22:20:43.888 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:43.908 -07 000000459 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:20:43.908 -07 000000480 INF: FPGA: Recv ZPIEZORD 33234
17-03-17 22:20:43.918 -07 000000459 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:20:43.918 -07 000000459 INF: Z Motor: Piezo is near 51.0 V (nominally 0 to 100 V), expect near 59.0 V, since DAC is at 5.899 V. Piezo Error = -8.0 V.
17-03-17 22:20:43.918 -07 000000459 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.0 um, Read 10 ADC samples: Avg = 36838 (-176.1 uncal um), Error = 0.9 uncal um, Median = 36838 (-176.1 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 36834 (-176.1 uncal um), Max = 36841 (-176.1 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 22:20:43.918 -07 000000459 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36838, posNoise = 3, negNoise = 4
17-03-17 22:20:43.918 -07 000000459 INF: Z Motor: After move to -0.176965, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:20:43.918 -07 000000459 INF: Z Motor: Settle wait time = 1438 ms, measure time = 161 ms (allowed 150 ms), total time = 1599 ms
17-03-17 22:20:43.918 -07 000000459 INF: Z Motor: Warning: Actual position measuring time = 161 ms, longer than max expected time of 150 ms
17-03-17 22:20:43.918 -07 000000459 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1603 ms
17-03-17 22:20:43.918 -07 000000459 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:20:43.918 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:20:43.918 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:20:43.918 -07 000000486 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:20:43.918 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:20:43.918 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:20:43.918 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:20:43.918 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:20:43.918 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:20:43.928 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:20:43.928 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:20:43.938 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 22:20:43.938 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 22:20:43.938 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:20:43.988 -07 000000486 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:20:44.188 -07 000000623 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:20:44.188 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:20:44.188 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:20:44.188 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 596199184, 0x0, 559484976) start.
17-03-17 22:20:44.228 -07 000000486 INF: FPGA: Recv @CAMSNAP 281
17-03-17 22:20:44.228 -07 000000623 INF: FPGA: Recv CAMSNAP
17-03-17 22:20:44.228 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 286 ms overall
17-03-17 22:20:44.318 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 596199184, 0x0, 559484976) end. Duration was 125 ms.
17-03-17 22:20:44.318 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:20:44.318 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:20:44.318 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-17 22:20:44.328 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:20:44.328 -07 000000486 INF: Autofocus start
17-03-17 22:20:44.328 -07 000000486 INF: MeasureProfile start
17-03-17 22:20:44.328 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:20:44.338 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:20:44.338 -07 000000382 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:20:44.338 -07 000000486 INF: MeasureProfile done
17-03-17 22:20:44.338 -07 000000486 INF: X=-48  Z correction [um]=-0.3191189
17-03-17 22:20:44.338 -07 000000486 INF: Autofocus finished
17-03-17 22:20:44.538 -07 000000480 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:20:44.538 -07 000000382 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:20:44.538 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87890625, Z-position -0.176978478889325. ----------
17-03-17 22:20:44.538 -07 000000610 INF: Cycle	62	Tile	7	Exposure Settings		A	450	G	216	T	216	C	450
17-03-17 22:20:44.548 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37101, sync = True, waitForSettling = True)
17-03-17 22:20:44.548 -07 000000610 INF: Z Motor: Moving to -0.169837 mm, started at -0.176978 mm, distance = 7.14 um
17-03-17 22:20:44.548 -07 000000610 INF: FPGA: Xmit ZDACW 37101\n [Z Motor]
17-03-17 22:20:44.548 -07 000000459 INF: FPGA: Recv ZDACW
17-03-17 22:20:44.558 -07 000000610 INF: FPGA: 'ZDACW 37101' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:44.558 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:20:44.558 -07 000000382 INF: FPGA: Recv ZDACR 37101
17-03-17 22:20:44.568 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:44.568 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:20:44.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:44.718 -07 000000459 INF: FPGA: Recv ZSGSRD 35728
17-03-17 22:20:44.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:20:44.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:44.728 -07 000000459 INF: FPGA: Recv ZSGSRD 35733
17-03-17 22:20:44.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:44.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:44.738 -07 000000382 INF: FPGA: Recv ZSGSRD 35729
17-03-17 22:20:44.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:44.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:44.758 -07 000000480 INF: FPGA: Recv ZSGSRD 35730
17-03-17 22:20:44.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:20:44.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:44.778 -07 000000459 INF: FPGA: Recv ZSGSRD 35730
17-03-17 22:20:44.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:20:44.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:44.788 -07 000000382 INF: FPGA: Recv ZSGSRD 35729
17-03-17 22:20:44.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:44.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:44.818 -07 000000480 INF: FPGA: Recv ZSGSRD 35723
17-03-17 22:20:44.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:20:44.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:44.838 -07 000000482 INF: FPGA: Recv ZSGSRD 35725
17-03-17 22:20:44.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-17 22:20:44.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:44.848 -07 000000382 INF: FPGA: Recv ZSGSRD 35728
17-03-17 22:20:44.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:44.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:44.858 -07 000000623 INF: FPGA: Recv ZSGSRD 35730
17-03-17 22:20:44.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:44.868 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:20:44.868 -07 000000486 INF: FPGA: Recv ZPIEZORD 31731
17-03-17 22:20:44.878 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:44.878 -07 000000610 INF: Z Motor: Piezo is near 47.8 V (nominally 0 to 100 V), expect near 56.6 V, since DAC is at 5.661 V. Piezo Error = -8.8 V.
17-03-17 22:20:44.878 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.8 um, Read 10 ADC samples: Avg = 35728 (-169.0 uncal um), Error = 0.9 uncal um, Median = 35729 (-169.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35723 (-168.9 uncal um), Max = 35733 (-169.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 22:20:44.878 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35728, posNoise = 5, negNoise = 5
17-03-17 22:20:44.878 -07 000000610 INF: Z Motor: After move to -0.169837, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:20:44.878 -07 000000610 INF: Z Motor: MoveAbsStepped took 330 ms)
17-03-17 22:20:44.878 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:20:44.878 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:20:44.878 -07 000000623 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:20:44.878 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:20:44.878 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:20:44.878 -07 000000482 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:20:44.878 -07 000000459 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:20:44.878 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:20:44.878 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:20:44.878 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:20:44.878 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:20:44.878 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:20:44.888 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:20:44.888 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:20:44.888 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:20:44.888 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:20:44.888 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 22:20:44.888 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 22:20:44.898 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 22:20:44.898 -07 000000459 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 22:20:44.898 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 450 450 216 216 37277 150\n [Camera]
17-03-17 22:20:45.098 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:20:45.548 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 642
17-03-17 22:20:45.548 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 642
17-03-17 22:20:45.548 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:20:45.548 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:20:45.548 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 2853998696, 0x0, 391868352) start.
17-03-17 22:20:45.548 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 642
17-03-17 22:20:45.548 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 642
17-03-17 22:20:45.548 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:20:45.548 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:20:45.548 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2889420960, 0x0, 418435064) start.
17-03-17 22:20:45.738 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37277 835
17-03-17 22:20:45.888 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning grn on 985
17-03-17 22:20:45.928 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2889420960, 0x0, 418435064) end. Duration was 377 ms.
17-03-17 22:20:45.928 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-17 22:20:45.928 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:20:45.928 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 2853998696, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 22:20:45.928 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 22:20:45.928 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:20:45.938 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 22:20:45.938 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 22:20:45.938 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 22:20:45.938 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 22:20:46.108 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1201
17-03-17 22:20:46.108 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1201
17-03-17 22:20:46.108 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:20:46.108 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:20:46.108 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 2952794160, 0x0, 391868352) start.
17-03-17 22:20:46.108 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1201
17-03-17 22:20:46.108 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1201
17-03-17 22:20:46.108 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:20:46.108 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:20:46.108 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 2988216424, 0x0, 418435064) start.
17-03-17 22:20:46.298 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP 1393
17-03-17 22:20:46.298 -07 000000459 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:20:46.298 -07 000000610 INF: FPGA: 'CAMDBLSNAP 450 450 216 216 37277 150' command took 2 ms to send, 1396 ms to get response, and 1400 ms overall
17-03-17 22:20:46.298 -07 000000610 INF: Skipping AutoFocus in Tile 8: adopting Best-Z from the cache: -0.170288
17-03-17 22:20:46.298 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.17029 mm
17-03-17 22:20:46.298 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:20:46.308 -07 000000480 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-17 22:20:46.308 -07 000000480 INF: Y Motor: Moving to 65.7226 mm, started at 64.8789 mm, delta = 0.8437 mm
17-03-17 22:20:46.308 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:20:46.308 -07 000000382 INF: Z Motor: Entering MoveAbsStepped (DAC = 37199, sync = True, waitForSettling = False)
17-03-17 22:20:46.308 -07 000000382 INF: Z Motor: Moving to -0.170286 mm, started at -0.169848 mm, distance = -0.44 um
17-03-17 22:20:46.308 -07 000000459 INF: FPGA: Recv YRDPOS 132873
17-03-17 22:20:46.318 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:20:46.318 -07 000000382 INF: FPGA: Xmit ZDACW 37199\n [Z Motor]
17-03-17 22:20:46.318 -07 000000480 INF: Y Motor: Encoder = 132873 = motor step 103807.0 = 64.8794 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:20:46.318 -07 000000486 INF: FPGA: Recv ZDACW
17-03-17 22:20:46.318 -07 000000480 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:20:46.318 -07 000000480 INF: Y Motor: Moving 1349 steps-28
17-03-17 22:20:46.328 -07 000000382 INF: FPGA: 'ZDACW 37199' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 22:20:46.328 -07 000000480 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:20:46.338 -07 000000382 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:20:46.338 -07 000000486 INF: FPGA: Recv ZDACR 37199
17-03-17 22:20:46.348 -07 000000382 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:20:46.348 -07 000000382 INF: Z Motor: MoveAbsStepped took 36 ms (did NOT wait for settling yet))
17-03-17 22:20:46.488 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 2988216424, 0x0, 418435064) end. Duration was 380 ms.
17-03-17 22:20:46.488 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-17 22:20:46.488 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:20:46.488 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 2952794160, 0x0, 391868352) end. Duration was 384 ms.
17-03-17 22:20:46.488 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 22:20:46.488 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:20:46.498 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:20:46.498 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 22:20:46.498 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 22:20:46.508 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 22:20:46.698 -07 000000501 INF: FPGA: Recv YMVTILE
17-03-17 22:20:46.698 -07 000000480 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 384 ms overall
17-03-17 22:20:46.738 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:20:46.748 -07 000000501 INF: FPGA: Recv YRDPOS 134582
17-03-17 22:20:46.758 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:20:46.758 -07 000000480 INF: Y Motor: Encoder = 134582 = motor step 105142.2 = 65.7139 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:20:46.758 -07 000000480 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-17 22:20:46.758 -07 000000480 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 385 ms, distance = 0.844 mm, average velocity = 2.191 mm/sec
17-03-17 22:20:46.958 -07 000000482 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:20:46.968 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 61. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=992, R2=1018, Total=2010. Warn if over 250 bubbles per interval.
17-03-17 22:20:47.708 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:20:47.708 -07 000000382 INF: FPGA: Recv YRDPOS 134583
17-03-17 22:20:47.718 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:20:47.718 -07 000000480 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:20:47.738 -07 000000480 INF: Y Motor: After move to 65.722610, error = -0.008255, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:20:47.738 -07 000000480 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 22:20:47.738 -07 000000480 INF: Y Motor: Moved to 65.7144 after 1433 ms (table move)
17-03-17 22:20:47.748 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.170286 mm (DAC = 37199)
17-03-17 22:20:47.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:47.748 -07 000000501 INF: FPGA: Recv ZSGSRD 35796
17-03-17 22:20:47.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:20:47.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:47.758 -07 000000382 INF: FPGA: Recv ZSGSRD 35801
17-03-17 22:20:47.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:47.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:47.768 -07 000000486 INF: FPGA: Recv ZSGSRD 35806
17-03-17 22:20:47.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:47.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:47.778 -07 000000551 INF: FPGA: Recv ZSGSRD 35799
17-03-17 22:20:47.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:47.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:47.788 -07 000000501 INF: FPGA: Recv ZSGSRD 35794
17-03-17 22:20:47.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:47.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:47.798 -07 000000382 INF: FPGA: Recv ZSGSRD 35799
17-03-17 22:20:47.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:47.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:47.808 -07 000000486 INF: FPGA: Recv ZSGSRD 35793
17-03-17 22:20:47.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:47.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:47.818 -07 000000480 INF: FPGA: Recv ZSGSRD 35795
17-03-17 22:20:47.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:47.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:47.828 -07 000000501 INF: FPGA: Recv ZSGSRD 35798
17-03-17 22:20:47.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:47.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:47.838 -07 000000482 INF: FPGA: Recv ZSGSRD 35806
17-03-17 22:20:47.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:47.848 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:20:47.848 -07 000000480 INF: FPGA: Recv ZPIEZORD 31858
17-03-17 22:20:47.858 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:47.858 -07 000000610 INF: Z Motor: Piezo is near 48.1 V (nominally 0 to 100 V), expect near 56.8 V, since DAC is at 5.676 V. Piezo Error = -8.7 V.
17-03-17 22:20:47.858 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.3 um, Read 10 ADC samples: Avg = 35799 (-169.4 uncal um), Error = 0.9 uncal um, Median = 35798 (-169.4 uncal um), StdDev = 5 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35793 (-169.4 uncal um), Max = 35806 (-169.5 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 22:20:47.858 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35799, posNoise = 7, negNoise = 6
17-03-17 22:20:47.858 -07 000000610 INF: Z Motor: After move to -0.170286, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:20:47.858 -07 000000610 INF: Z Motor: Settle wait time = 1436 ms, measure time = 110 ms (allowed 150 ms), total time = 1546 ms
17-03-17 22:20:47.858 -07 000000610 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-17 22:20:47.898 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1591 ms
17-03-17 22:20:47.898 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:20:47.898 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.71435546875, Z-position -0.170303722474035. ----------
17-03-17 22:20:47.898 -07 000000610 INF: Cycle	62	Tile	8	Exposure Settings		A	450	G	216	T	216	C	450
17-03-17 22:20:47.898 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37023, sync = True, waitForSettling = True)
17-03-17 22:20:47.898 -07 000000610 INF: Z Motor: Moving to -0.169480 mm, started at -0.170304 mm, distance = 0.82 um
17-03-17 22:20:47.898 -07 000000610 INF: FPGA: Xmit ZDACW 37023\n [Z Motor]
17-03-17 22:20:47.908 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 22:20:47.908 -07 000000610 INF: FPGA: 'ZDACW 37023' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 22:20:47.908 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:20:47.908 -07 000000382 INF: FPGA: Recv ZDACR 37023
17-03-17 22:20:47.918 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:47.918 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:20:48.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:48.068 -07 000000480 INF: FPGA: Recv ZSGSRD 35668
17-03-17 22:20:48.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:20:48.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:48.078 -07 000000382 INF: FPGA: Recv ZSGSRD 35672
17-03-17 22:20:48.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:20:48.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:48.088 -07 000000623 INF: FPGA: Recv ZSGSRD 35672
17-03-17 22:20:48.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:48.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:48.098 -07 000000501 INF: FPGA: Recv ZSGSRD 35671
17-03-17 22:20:48.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:48.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:48.108 -07 000000623 INF: FPGA: Recv ZSGSRD 35668
17-03-17 22:20:48.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:48.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:48.118 -07 000000480 INF: FPGA: Recv ZSGSRD 35667
17-03-17 22:20:48.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:48.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:48.128 -07 000000486 INF: FPGA: Recv ZSGSRD 35673
17-03-17 22:20:48.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:48.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:48.138 -07 000000382 INF: FPGA: Recv ZSGSRD 35667
17-03-17 22:20:48.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:48.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:48.148 -07 000000382 INF: FPGA: Recv ZSGSRD 35671
17-03-17 22:20:48.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:48.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:48.158 -07 000000551 INF: FPGA: Recv ZSGSRD 35674
17-03-17 22:20:48.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:48.168 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:20:48.168 -07 000000482 INF: FPGA: Recv ZPIEZORD 31643
17-03-17 22:20:48.178 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:48.178 -07 000000610 INF: Z Motor: Piezo is near 47.6 V (nominally 0 to 100 V), expect near 56.5 V, since DAC is at 5.649 V. Piezo Error = -8.9 V.
17-03-17 22:20:48.178 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.5 um, Read 10 ADC samples: Avg = 35670 (-168.6 uncal um), Error = 0.9 uncal um, Median = 35671 (-168.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 35667 (-168.6 uncal um), Max = 35674 (-168.6 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 22:20:48.178 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35670, posNoise = 4, negNoise = 3
17-03-17 22:20:48.178 -07 000000610 INF: Z Motor: After move to -0.169480, error = 0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:20:48.178 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 22:20:48.178 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:20:48.178 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:20:48.178 -07 000000459 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:20:48.178 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:20:48.178 -07 000000486 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:20:48.178 -07 000000482 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:20:48.178 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:20:48.178 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:20:48.178 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 22:20:48.178 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:20:48.178 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 22:20:48.178 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:20:48.188 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:20:48.188 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:20:48.188 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:20:48.188 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:20:48.198 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 22:20:48.198 -07 000000482 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 22:20:48.198 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 22:20:48.198 -07 000000486 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 17 ms.
17-03-17 22:20:48.198 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 450 450 216 216 37199 150\n [Camera]
17-03-17 22:20:48.398 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:20:48.848 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 642
17-03-17 22:20:48.848 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 642
17-03-17 22:20:48.848 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:20:48.848 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:20:48.848 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 3023638688, 0x0, 391868352) start.
17-03-17 22:20:48.848 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 642
17-03-17 22:20:48.848 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 642
17-03-17 22:20:48.848 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:20:48.998 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:20:48.998 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-17 22:20:49.038 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37199 835
17-03-17 22:20:49.188 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning grn on 985
17-03-17 22:20:49.248 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 3023638688, 0x0, 391868352) end. Duration was 400 ms.
17-03-17 22:20:49.248 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 22:20:49.248 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:20:49.258 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:20:49.258 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 22:20:49.318 -07 000000551 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 62, FrontChillerTemperature: 4.004458,
17-03-17 22:20:49.378 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 372 ms.
17-03-17 22:20:49.378 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-17 22:20:49.378 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:20:49.378 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:20:49.388 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 531 ms.
17-03-17 22:20:49.408 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1201
17-03-17 22:20:49.408 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1201
17-03-17 22:20:49.408 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:20:49.408 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1201
17-03-17 22:20:49.408 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1201
17-03-17 22:20:49.408 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:20:49.418 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:20:49.418 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start.
17-03-17 22:20:49.418 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:20:49.418 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) start.
17-03-17 22:20:49.598 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP 1394
17-03-17 22:20:49.598 -07 000000382 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:20:49.598 -07 000000610 INF: FPGA: 'CAMDBLSNAP 450 450 216 216 37199 150' command took 2 ms to send, 1396 ms to get response, and 1400 ms overall
17-03-17 22:20:49.598 -07 000000610 INF: Skipping AutoFocus in Tile 9: adopting Best-Z from the cache: -0.169802
17-03-17 22:20:49.598 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.16980 mm
17-03-17 22:20:49.598 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:20:49.608 -07 000000551 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-17 22:20:49.608 -07 000000551 INF: Y Motor: Moving to 66.5526 mm, started at 65.7144 mm, delta = 0.8382 mm
17-03-17 22:20:49.608 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:20:49.608 -07 000000448 INF: FPGA: Recv YRDPOS 134583
17-03-17 22:20:49.608 -07 000000382 INF: Z Motor: Entering MoveAbsStepped (DAC = 37093, sync = True, waitForSettling = False)
17-03-17 22:20:49.608 -07 000000382 INF: Z Motor: Moving to -0.169801 mm, started at -0.169475 mm, distance = -0.33 um
17-03-17 22:20:49.618 -07 000000551 INF: FPGA: 'YRDPOS' command took 1 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:20:49.618 -07 000000382 INF: FPGA: Xmit ZDACW 37093\n [Z Motor]
17-03-17 22:20:49.618 -07 000000551 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:20:49.618 -07 000000551 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:20:49.618 -07 000000551 INF: Y Motor: Moving 1341 steps-18
17-03-17 22:20:49.618 -07 000000438 INF: FPGA: Recv ZDACW
17-03-17 22:20:49.628 -07 000000382 INF: FPGA: 'ZDACW 37093' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 22:20:49.628 -07 000000382 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:20:49.628 -07 000000438 INF: FPGA: Recv ZDACR 37093
17-03-17 22:20:49.638 -07 000000551 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:20:49.638 -07 000000382 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:49.638 -07 000000382 INF: Z Motor: MoveAbsStepped took 26 ms (did NOT wait for settling yet))
17-03-17 22:20:49.798 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 383 ms.
17-03-17 22:20:49.798 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 22:20:49.798 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:20:49.808 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) end. Duration was 380 ms.
17-03-17 22:20:49.808 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-17 22:20:49.808 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:20:49.808 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:20:49.808 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 22:20:49.808 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:20:49.818 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-17 22:20:50.008 -07 000000486 INF: FPGA: Recv YMVTILE
17-03-17 22:20:50.008 -07 000000551 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 22:20:50.048 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:20:50.058 -07 000000459 INF: FPGA: Recv YRDPOS 136272
17-03-17 22:20:50.058 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:20:50.058 -07 000000551 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:20:50.058 -07 000000551 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 22:20:50.058 -07 000000551 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.838 mm, average velocity = 2.111 mm/sec
17-03-17 22:20:51.008 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:20:51.008 -07 000000448 INF: FPGA: Recv YRDPOS 136273
17-03-17 22:20:51.018 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:20:51.018 -07 000000551 INF: Y Motor: Encoder = 136273 = motor step 106463.3 = 66.5396 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:20:51.038 -07 000000551 INF: Y Motor: After move to 66.552605, error = -0.013054, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:20:51.038 -07 000000551 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 22:20:51.038 -07 000000551 INF: Y Motor: Moved to 66.5396 after 1435 ms (table move)
17-03-17 22:20:51.038 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.169801 mm (DAC = 37093)
17-03-17 22:20:51.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:51.048 -07 000000501 INF: FPGA: Recv ZSGSRD 35728
17-03-17 22:20:51.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 22:20:51.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:51.048 -07 000000448 INF: FPGA: Recv ZSGSRD 35723
17-03-17 22:20:51.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:20:51.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:51.058 -07 000000382 INF: FPGA: Recv ZSGSRD 35722
17-03-17 22:20:51.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:51.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:51.068 -07 000000551 INF: FPGA: Recv ZSGSRD 35720
17-03-17 22:20:51.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:51.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:51.078 -07 000000482 INF: FPGA: Recv ZSGSRD 35729
17-03-17 22:20:51.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:51.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:51.088 -07 000000448 INF: FPGA: Recv ZSGSRD 35717
17-03-17 22:20:51.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:51.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:51.098 -07 000000382 INF: FPGA: Recv ZSGSRD 35722
17-03-17 22:20:51.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:51.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:51.108 -07 000000551 INF: FPGA: Recv ZSGSRD 35718
17-03-17 22:20:51.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:51.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:51.118 -07 000000501 INF: FPGA: Recv ZSGSRD 35717
17-03-17 22:20:51.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:51.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:51.128 -07 000000551 INF: FPGA: Recv ZSGSRD 35721
17-03-17 22:20:51.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:51.138 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:20:51.138 -07 000000480 INF: FPGA: Recv ZPIEZORD 31680
17-03-17 22:20:51.148 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:51.148 -07 000000610 INF: Z Motor: Piezo is near 47.7 V (nominally 0 to 100 V), expect near 56.6 V, since DAC is at 5.660 V. Piezo Error = -8.9 V.
17-03-17 22:20:51.148 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.8 um, Read 10 ADC samples: Avg = 35722 (-168.9 uncal um), Error = 0.9 uncal um, Median = 35722 (-168.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35717 (-168.9 uncal um), Max = 35729 (-169.0 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 22:20:51.148 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35722, posNoise = 7, negNoise = 5
17-03-17 22:20:51.148 -07 000000610 INF: Z Motor: After move to -0.169801, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:20:51.148 -07 000000610 INF: Z Motor: Settle wait time = 1434 ms, measure time = 102 ms (allowed 150 ms), total time = 1536 ms
17-03-17 22:20:51.148 -07 000000610 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 22:20:51.198 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1591 ms
17-03-17 22:20:51.198 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:20:51.198 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.53955078125, Z-position -0.16980905813912. ----------
17-03-17 22:20:51.198 -07 000000610 INF: Cycle	62	Tile	9	Exposure Settings		A	450	G	216	T	216	C	450
17-03-17 22:20:51.198 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36916, sync = True, waitForSettling = True)
17-03-17 22:20:51.198 -07 000000610 INF: Z Motor: Moving to -0.168991 mm, started at -0.169809 mm, distance = 0.82 um
17-03-17 22:20:51.198 -07 000000610 INF: FPGA: Xmit ZDACW 36916\n [Z Motor]
17-03-17 22:20:51.208 -07 000000462 INF: FPGA: Recv ZDACW
17-03-17 22:20:51.208 -07 000000610 INF: FPGA: 'ZDACW 36916' command took 0 ms to send, 1 ms to get response, and 5 ms overall
17-03-17 22:20:51.208 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:20:51.208 -07 000000501 INF: FPGA: Recv ZDACR 36916
17-03-17 22:20:51.218 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:20:51.218 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:20:51.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:51.368 -07 000000486 INF: FPGA: Recv ZSGSRD 35599
17-03-17 22:20:51.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:20:51.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:51.378 -07 000000448 INF: FPGA: Recv ZSGSRD 35597
17-03-17 22:20:51.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:51.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:51.388 -07 000000551 INF: FPGA: Recv ZSGSRD 35596
17-03-17 22:20:51.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:51.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:51.398 -07 000000462 INF: FPGA: Recv ZSGSRD 35601
17-03-17 22:20:51.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:51.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:51.408 -07 000000438 INF: FPGA: Recv ZSGSRD 35600
17-03-17 22:20:51.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:51.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:51.418 -07 000000448 INF: FPGA: Recv ZSGSRD 35593
17-03-17 22:20:51.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:51.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:51.428 -07 000000382 INF: FPGA: Recv ZSGSRD 35593
17-03-17 22:20:51.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:51.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:51.438 -07 000000482 INF: FPGA: Recv ZSGSRD 35592
17-03-17 22:20:51.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:51.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:51.448 -07 000000486 INF: FPGA: Recv ZSGSRD 35598
17-03-17 22:20:51.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:51.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:51.458 -07 000000618 INF: FPGA: Recv ZSGSRD 35596
17-03-17 22:20:51.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:51.468 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:20:51.468 -07 000000382 INF: FPGA: Recv ZPIEZORD 31527
17-03-17 22:20:51.478 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:51.478 -07 000000610 INF: Z Motor: Piezo is near 47.3 V (nominally 0 to 100 V), expect near 56.3 V, since DAC is at 5.633 V. Piezo Error = -9.0 V.
17-03-17 22:20:51.478 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.0 um, Read 10 ADC samples: Avg = 35596 (-168.1 uncal um), Error = 0.9 uncal um, Median = 35596 (-168.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35592 (-168.1 uncal um), Max = 35601 (-168.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 22:20:51.478 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35596, posNoise = 5, negNoise = 4
17-03-17 22:20:51.478 -07 000000610 INF: Z Motor: After move to -0.168991, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:20:51.478 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-17 22:20:51.478 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:20:51.478 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:20:51.478 -07 000000458 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:20:51.478 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:20:51.478 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:20:51.478 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:20:51.478 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:20:51.478 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:20:51.478 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:20:51.478 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:20:51.478 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:20:51.478 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:20:51.488 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 22:20:51.488 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:20:51.488 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:20:51.488 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:20:51.498 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-17 22:20:51.498 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 22:20:51.498 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-17 22:20:51.498 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 22:20:51.498 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 450 450 216 216 37093 150\n [Camera]
17-03-17 22:20:51.698 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:20:51.968 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:20:51.968 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 61. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=992, R2=1018, Total=2010. Warn if over 250 bubbles per interval.
17-03-17 22:20:52.148 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 642
17-03-17 22:20:52.148 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 642
17-03-17 22:20:52.148 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:20:52.158 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 642
17-03-17 22:20:52.158 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 642
17-03-17 22:20:52.158 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:20:52.268 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:20:52.268 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 2952794160, 0x0, 391868352) start.
17-03-17 22:20:52.268 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:20:52.268 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-17 22:20:52.348 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37093 835
17-03-17 22:20:52.498 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP turning grn on 985
17-03-17 22:20:52.638 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 2952794160, 0x0, 391868352) end. Duration was 373 ms.
17-03-17 22:20:52.638 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 374 ms.
17-03-17 22:20:52.638 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:20:52.638 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 369 ms.
17-03-17 22:20:52.648 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 370 ms.
17-03-17 22:20:52.648 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:20:52.648 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:20:52.648 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 495 ms.
17-03-17 22:20:52.648 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:20:52.658 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 499 ms.
17-03-17 22:20:52.708 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1201
17-03-17 22:20:52.708 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1201
17-03-17 22:20:52.708 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:20:52.718 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1201
17-03-17 22:20:52.718 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1201
17-03-17 22:20:52.718 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:20:52.718 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:20:52.718 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start.
17-03-17 22:20:52.718 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:20:52.718 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) start.
17-03-17 22:20:52.898 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP 1393
17-03-17 22:20:52.908 -07 000000480 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:20:52.908 -07 000000610 INF: FPGA: 'CAMDBLSNAP 450 450 216 216 37093 150' command took 2 ms to send, 1391 ms to get response, and 1402 ms overall
17-03-17 22:20:52.908 -07 000000610 INF: Skipping AutoFocus in Tile 10: adopting Best-Z from the cache: -0.169808
17-03-17 22:20:52.908 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.16981 mm
17-03-17 22:20:52.908 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:20:52.908 -07 000000382 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-17 22:20:52.908 -07 000000382 INF: Y Motor: Moving to 67.3826 mm, started at 66.5396 mm, delta = 0.8431 mm
17-03-17 22:20:52.908 -07 000000448 INF: Z Motor: Entering MoveAbsStepped (DAC = 37095, sync = True, waitForSettling = False)
17-03-17 22:20:52.908 -07 000000448 INF: Z Motor: Moving to -0.169810 mm, started at -0.169000 mm, distance = -0.81 um
17-03-17 22:20:52.908 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:20:52.908 -07 000000480 INF: FPGA: Recv YRDPOS 136273
17-03-17 22:20:52.918 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 22:20:52.918 -07 000000382 INF: Y Motor: Encoder = 136273 = motor step 106463.3 = 66.5396 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:20:52.918 -07 000000382 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:20:52.918 -07 000000382 INF: Y Motor: Moving 1349 steps-28
17-03-17 22:20:52.918 -07 000000448 INF: FPGA: Xmit ZDACW 37095\n [Z Motor]
17-03-17 22:20:52.918 -07 000000480 INF: FPGA: Recv ZDACW
17-03-17 22:20:52.928 -07 000000448 INF: FPGA: 'ZDACW 37095' command took 3 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 22:20:52.928 -07 000000448 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:20:52.928 -07 000000480 INF: FPGA: Recv ZDACR 37095
17-03-17 22:20:52.938 -07 000000382 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:20:52.938 -07 000000448 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:52.938 -07 000000448 INF: Z Motor: MoveAbsStepped took 24 ms (did NOT wait for settling yet))
17-03-17 22:20:53.098 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 384 ms.
17-03-17 22:20:53.098 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) end. Duration was 381 ms.
17-03-17 22:20:53.098 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-17 22:20:53.098 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:20:53.098 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 22:20:53.098 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:20:53.108 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 22:20:53.108 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 22:20:53.108 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 22:20:53.118 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 22:20:53.308 -07 000000480 INF: FPGA: Recv YMVTILE
17-03-17 22:20:53.308 -07 000000382 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-17 22:20:53.358 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:20:53.358 -07 000000448 INF: FPGA: Recv YRDPOS 137978
17-03-17 22:20:53.368 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:53.368 -07 000000382 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:20:53.368 -07 000000382 INF: Y Motor: Position error before settling (table move) = -22 encoder counts (-0.011 mm)
17-03-17 22:20:53.368 -07 000000382 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.843 mm, average velocity = 2.118 mm/sec
17-03-17 22:20:54.318 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:20:54.318 -07 000000448 INF: FPGA: Recv YRDPOS 137978
17-03-17 22:20:54.328 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:20:54.328 -07 000000382 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:20:54.348 -07 000000382 INF: Y Motor: After move to 67.382607, error = -0.010536, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:20:54.348 -07 000000382 INF: Y Motor: Position error after settling (table move) = -22 encoder counts (-0.011 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:20:54.348 -07 000000382 INF: Y Motor: Moved to 67.3721 after 1439 ms (table move)
17-03-17 22:20:54.348 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.169810 mm (DAC = 37095)
17-03-17 22:20:54.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:54.358 -07 000000459 INF: FPGA: Recv ZSGSRD 35721
17-03-17 22:20:54.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:20:54.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:54.368 -07 000000458 INF: FPGA: Recv ZSGSRD 35724
17-03-17 22:20:54.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:20:54.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:54.378 -07 000000480 INF: FPGA: Recv ZSGSRD 35726
17-03-17 22:20:54.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:54.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:54.388 -07 000000480 INF: FPGA: Recv ZSGSRD 35728
17-03-17 22:20:54.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:54.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:54.398 -07 000000480 INF: FPGA: Recv ZSGSRD 35725
17-03-17 22:20:54.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:54.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:54.408 -07 000000382 INF: FPGA: Recv ZSGSRD 35719
17-03-17 22:20:54.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:54.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:54.418 -07 000000448 INF: FPGA: Recv ZSGSRD 35722
17-03-17 22:20:54.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:54.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:54.428 -07 000000480 INF: FPGA: Recv ZSGSRD 35719
17-03-17 22:20:54.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:54.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:54.438 -07 000000459 INF: FPGA: Recv ZSGSRD 35721
17-03-17 22:20:54.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:54.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:54.448 -07 000000448 INF: FPGA: Recv ZSGSRD 35723
17-03-17 22:20:54.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:54.458 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:20:54.458 -07 000000448 INF: FPGA: Recv ZPIEZORD 31753
17-03-17 22:20:54.468 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:54.468 -07 000000610 INF: Z Motor: Piezo is near 47.8 V (nominally 0 to 100 V), expect near 56.6 V, since DAC is at 5.660 V. Piezo Error = -8.8 V.
17-03-17 22:20:54.468 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.8 um, Read 10 ADC samples: Avg = 35723 (-168.9 uncal um), Error = 0.9 uncal um, Median = 35722 (-168.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35719 (-168.9 uncal um), Max = 35728 (-169.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 22:20:54.468 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35723, posNoise = 5, negNoise = 4
17-03-17 22:20:54.468 -07 000000610 INF: Z Motor: After move to -0.169810, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:20:54.468 -07 000000610 INF: Z Motor: Settle wait time = 1441 ms, measure time = 113 ms (allowed 150 ms), total time = 1554 ms
17-03-17 22:20:54.468 -07 000000610 INF: Z Motor: Waiting extra 37 ms after reading position to reach expected total of 150 ms
17-03-17 22:20:54.508 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1596 ms
17-03-17 22:20:54.508 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:20:54.508 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.3720703125, Z-position -0.169815482351262. ----------
17-03-17 22:20:54.508 -07 000000610 INF: Cycle	62	Tile	10	Exposure Settings		A	450	G	216	T	216	C	450
17-03-17 22:20:54.508 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36918, sync = True, waitForSettling = True)
17-03-17 22:20:54.508 -07 000000610 INF: Z Motor: Moving to -0.169000 mm, started at -0.169815 mm, distance = 0.82 um
17-03-17 22:20:54.508 -07 000000610 INF: FPGA: Xmit ZDACW 36918\n [Z Motor]
17-03-17 22:20:54.508 -07 000000448 INF: FPGA: Recv ZDACW
17-03-17 22:20:54.518 -07 000000610 INF: FPGA: 'ZDACW 36918' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:20:54.518 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:20:54.518 -07 000000382 INF: FPGA: Recv ZDACR 36918
17-03-17 22:20:54.528 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:54.528 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:20:54.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:54.678 -07 000000458 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 62, FrontChillerTemperature: 4.018051,
17-03-17 22:20:54.678 -07 000000448 INF: FPGA: Recv ZSGSRD 35599
17-03-17 22:20:54.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:54.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:54.698 -07 000000459 INF: FPGA: Recv ZSGSRD 35597
17-03-17 22:20:54.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:20:54.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:54.708 -07 000000382 INF: FPGA: Recv ZSGSRD 35598
17-03-17 22:20:54.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:54.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:54.728 -07 000000382 INF: FPGA: Recv ZSGSRD 35600
17-03-17 22:20:54.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:20:54.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:54.738 -07 000000458 INF: FPGA: Recv ZSGSRD 35595
17-03-17 22:20:54.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:20:54.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:54.768 -07 000000459 INF: FPGA: Recv ZSGSRD 35594
17-03-17 22:20:54.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:20:54.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:54.778 -07 000000382 INF: FPGA: Recv ZSGSRD 35598
17-03-17 22:20:54.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:54.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:54.788 -07 000000480 INF: FPGA: Recv ZSGSRD 35599
17-03-17 22:20:54.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:54.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:54.798 -07 000000448 INF: FPGA: Recv ZSGSRD 35601
17-03-17 22:20:54.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:54.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:54.808 -07 000000382 INF: FPGA: Recv ZSGSRD 35598
17-03-17 22:20:54.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:54.818 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:20:54.818 -07 000000382 INF: FPGA: Recv ZPIEZORD 31545
17-03-17 22:20:54.828 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:54.828 -07 000000610 INF: Z Motor: Piezo is near 47.4 V (nominally 0 to 100 V), expect near 56.3 V, since DAC is at 5.633 V. Piezo Error = -8.9 V.
17-03-17 22:20:54.828 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.0 um, Read 10 ADC samples: Avg = 35598 (-168.1 uncal um), Error = 0.9 uncal um, Median = 35598 (-168.1 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 35594 (-168.1 uncal um), Max = 35601 (-168.2 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 22:20:54.828 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35598, posNoise = 3, negNoise = 4
17-03-17 22:20:54.828 -07 000000610 INF: Z Motor: After move to -0.169000, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:20:54.828 -07 000000610 INF: Z Motor: MoveAbsStepped took 314 ms)
17-03-17 22:20:54.828 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:20:54.828 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:20:54.828 -07 000000459 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:20:54.828 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:20:54.828 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:20:54.828 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:20:54.828 -07 000000458 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:20:54.828 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:20:54.828 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:20:54.828 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:20:54.828 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:20:54.828 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:20:54.838 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:20:54.838 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:20:54.838 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 22:20:54.838 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:20:54.848 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 22:20:54.848 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 22:20:54.848 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 22:20:54.848 -07 000000458 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 22:20:54.848 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 450 450 216 216 37095 150\n [Camera]
17-03-17 22:20:55.048 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:20:55.498 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 642
17-03-17 22:20:55.498 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 642
17-03-17 22:20:55.508 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:20:55.508 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:20:55.508 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 22:20:55.508 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 642
17-03-17 22:20:55.508 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 642
17-03-17 22:20:55.508 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:20:55.508 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:20:55.508 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) start.
17-03-17 22:20:55.698 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37095 835
17-03-17 22:20:55.848 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP turning grn on 985
17-03-17 22:20:55.878 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 22:20:55.878 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-17 22:20:55.878 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:20:55.888 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 22:20:55.888 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:20:55.888 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 22:20:55.888 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 22:20:55.888 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:20:55.888 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:20:55.898 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 22:20:56.058 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1201
17-03-17 22:20:56.058 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1201
17-03-17 22:20:56.058 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:20:56.058 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:20:56.058 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 1476890328, 0x0, 391868352) start.
17-03-17 22:20:56.068 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1201
17-03-17 22:20:56.068 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1201
17-03-17 22:20:56.068 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:20:56.068 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:20:56.068 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2988216424, 0x0, 418435064) start.
17-03-17 22:20:56.248 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP 1393
17-03-17 22:20:56.248 -07 000000382 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:20:56.258 -07 000000610 INF: FPGA: 'CAMDBLSNAP 450 450 216 216 37095 150' command took 2 ms to send, 1389 ms to get response, and 1400 ms overall
17-03-17 22:20:56.258 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 22:20:56.258 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.3720703125, Z-Position -0.169012455833541. ------
17-03-17 22:20:56.258 -07 000000438 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.17529 mm
17-03-17 22:20:56.258 -07 000000438 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:20:56.258 -07 000000551 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:20:56.258 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:20:56.268 -07 000000551 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 22:20:56.268 -07 000000459 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-17 22:20:56.268 -07 000000459 INF: Y Motor: Moving to 68.2126 mm, started at 67.3721 mm, delta = 0.8405 mm
17-03-17 22:20:56.268 -07 000000482 INF: Z Motor: Entering MoveAbsStepped (DAC = 38292, sync = True, waitForSettling = False)
17-03-17 22:20:56.268 -07 000000482 INF: Z Motor: Moving to -0.175290 mm, started at -0.169012 mm, distance = -6.28 um
17-03-17 22:20:56.268 -07 000000551 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:20:56.278 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:20:56.278 -07 000000448 INF: FPGA: Recv YRDPOS 137978
17-03-17 22:20:56.288 -07 000000482 INF: FPGA: Xmit ZDACW 38292\n [Z Motor]
17-03-17 22:20:56.288 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:20:56.288 -07 000000459 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:20:56.288 -07 000000459 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:20:56.288 -07 000000459 INF: Y Motor: Moving 1345 steps-22
17-03-17 22:20:56.288 -07 000000462 INF: FPGA: Recv ZDACW
17-03-17 22:20:56.298 -07 000000459 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:20:56.298 -07 000000482 INF: FPGA: 'ZDACW 38292' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:20:56.308 -07 000000482 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:20:56.308 -07 000000576 INF: FPGA: Recv ZDACR 38292
17-03-17 22:20:56.318 -07 000000482 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:20:56.318 -07 000000482 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-17 22:20:56.448 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 1476890328, 0x0, 391868352) end. Duration was 386 ms.
17-03-17 22:20:56.448 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 22:20:56.448 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:20:56.448 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2988216424, 0x0, 418435064) end. Duration was 386 ms.
17-03-17 22:20:56.448 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 22:20:56.448 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:20:56.448 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:20:56.448 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 22:20:56.458 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:20:56.458 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 22:20:56.468 -07 000000382 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:20:56.468 -07 000000551 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 194 ms to get response, and 203 ms overall
17-03-17 22:20:56.668 -07 000000382 INF: FPGA: Recv YMVTILE
17-03-17 22:20:56.668 -07 000000459 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-17 22:20:56.708 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:20:56.718 -07 000000486 INF: FPGA: Recv YRDPOS 139684
17-03-17 22:20:56.718 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:20:56.718 -07 000000459 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:20:56.718 -07 000000459 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-17 22:20:56.718 -07 000000459 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.841 mm, average velocity = 2.172 mm/sec
17-03-17 22:20:56.968 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:20:56.968 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 61. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=992, R2=1018, Total=2010. Warn if over 250 bubbles per interval.
17-03-17 22:20:57.668 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:20:57.668 -07 000000569 INF: FPGA: Recv YRDPOS 139684
17-03-17 22:20:57.678 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:57.678 -07 000000459 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:20:57.698 -07 000000459 INF: Y Motor: After move to 68.212608, error = -0.007530, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:20:57.698 -07 000000459 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:20:57.698 -07 000000459 INF: Y Motor: Moved to 68.2051 after 1432 ms (table move)
17-03-17 22:20:57.698 -07 000000438 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175290 mm (DAC = 38292)
17-03-17 22:20:57.698 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:57.708 -07 000000618 INF: FPGA: Recv ZSGSRD 36574
17-03-17 22:20:57.708 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 3 ms to get response, and 6 ms overall
17-03-17 22:20:57.708 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:57.708 -07 000000576 INF: FPGA: Recv ZSGSRD 36584
17-03-17 22:20:57.718 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:20:57.718 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:57.718 -07 000000561 INF: FPGA: Recv ZSGSRD 36580
17-03-17 22:20:57.728 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:57.728 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:57.728 -07 000000459 INF: FPGA: Recv ZSGSRD 36561
17-03-17 22:20:57.738 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:57.738 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:57.738 -07 000000618 INF: FPGA: Recv ZSGSRD 36577
17-03-17 22:20:57.748 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:57.748 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:57.748 -07 000000576 INF: FPGA: Recv ZSGSRD 36580
17-03-17 22:20:57.758 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:57.758 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:57.758 -07 000000486 INF: FPGA: Recv ZSGSRD 36574
17-03-17 22:20:57.768 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:57.768 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:57.768 -07 000000448 INF: FPGA: Recv ZSGSRD 36576
17-03-17 22:20:57.778 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:57.778 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:57.778 -07 000000618 INF: FPGA: Recv ZSGSRD 36577
17-03-17 22:20:57.788 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:57.788 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:57.788 -07 000000480 INF: FPGA: Recv ZSGSRD 36574
17-03-17 22:20:57.798 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:57.798 -07 000000438 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:20:57.798 -07 000000618 INF: FPGA: Recv ZPIEZORD 32852
17-03-17 22:20:57.808 -07 000000438 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:57.808 -07 000000438 INF: Z Motor: Piezo is near 50.2 V (nominally 0 to 100 V), expect near 58.4 V, since DAC is at 5.843 V. Piezo Error = -8.2 V.
17-03-17 22:20:57.808 -07 000000438 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.3 um, Read 10 ADC samples: Avg = 36576 (-174.4 uncal um), Error = 0.9 uncal um, Median = 36576 (-174.4 uncal um), StdDev = 6 (0.0 uncal um), Range = 23 (0.1 uncal um), Min = 36561 (-174.3 uncal um), Max = 36584 (-174.5 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 15 (0.1 uncal um)
17-03-17 22:20:57.808 -07 000000438 INF: Z Motor: ADC noise = 15, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36576, posNoise = 8, negNoise = 15
17-03-17 22:20:57.808 -07 000000438 INF: Z Motor: After move to -0.175290, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:20:57.808 -07 000000438 INF: Z Motor: Settle wait time = 1436 ms, measure time = 103 ms (allowed 150 ms), total time = 1539 ms
17-03-17 22:20:57.808 -07 000000438 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 22:20:57.858 -07 000000438 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1595 ms
17-03-17 22:20:57.858 -07 000000438 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:20:57.858 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:20:57.858 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:20:57.858 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:20:57.858 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:20:57.858 -07 000000448 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:20:57.858 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:20:57.858 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:20:57.858 -07 000000448 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:20:57.868 -07 000000448 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:20:57.868 -07 000000448 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:20:57.878 -07 000000448 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 22:20:57.878 -07 000000448 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 22:20:57.878 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:20:57.928 -07 000000382 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:20:58.128 -07 000000480 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:20:58.128 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:20:58.128 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:20:58.128 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 22:20:58.168 -07 000000448 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:20:58.168 -07 000000618 INF: FPGA: Recv CAMSNAP
17-03-17 22:20:58.168 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 284 ms overall
17-03-17 22:20:58.258 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 22:20:58.258 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:20:58.258 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:20:58.258 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 22:20:58.268 -07 000000438 INF: Autofocus start
17-03-17 22:20:58.268 -07 000000438 INF: MeasureProfile start
17-03-17 22:20:58.268 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:20:58.268 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:20:58.278 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 22:20:58.278 -07 000000480 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:20:58.278 -07 000000438 INF: MeasureProfile done
17-03-17 22:20:58.278 -07 000000438 INF: X=48  Z correction [um]=0.1739867
17-03-17 22:20:58.278 -07 000000438 INF: Autofocus finished
17-03-17 22:20:58.478 -07 000000438 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:20:58.478 -07 000000480 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:20:58.478 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.205078125, Z-position -0.175295335308184. ----------
17-03-17 22:20:58.478 -07 000000610 INF: Cycle	62	Tile	11	Exposure Settings		A	450	G	216	T	216	C	450
17-03-17 22:20:58.488 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36843, sync = True, waitForSettling = True)
17-03-17 22:20:58.488 -07 000000610 INF: Z Motor: Moving to -0.168656 mm, started at -0.175295 mm, distance = 6.64 um
17-03-17 22:20:58.488 -07 000000610 INF: FPGA: Xmit ZDACW 36843\n [Z Motor]
17-03-17 22:20:58.488 -07 000000618 INF: FPGA: Recv ZDACW
17-03-17 22:20:58.498 -07 000000610 INF: FPGA: 'ZDACW 36843' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:20:58.498 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:20:58.498 -07 000000438 INF: FPGA: Recv ZDACR 36843
17-03-17 22:20:58.508 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:58.508 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:20:58.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:58.658 -07 000000382 INF: FPGA: Recv ZSGSRD 35544
17-03-17 22:20:58.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:20:58.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:58.668 -07 000000448 INF: FPGA: Recv ZSGSRD 35541
17-03-17 22:20:58.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:58.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:58.678 -07 000000618 INF: FPGA: Recv ZSGSRD 35544
17-03-17 22:20:58.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:58.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:58.688 -07 000000448 INF: FPGA: Recv ZSGSRD 35545
17-03-17 22:20:58.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:58.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:58.698 -07 000000618 INF: FPGA: Recv ZSGSRD 35542
17-03-17 22:20:58.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:58.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:58.708 -07 000000382 INF: FPGA: Recv ZSGSRD 35543
17-03-17 22:20:58.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:58.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:58.718 -07 000000448 INF: FPGA: Recv ZSGSRD 35550
17-03-17 22:20:58.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:58.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:58.728 -07 000000448 INF: FPGA: Recv ZSGSRD 35541
17-03-17 22:20:58.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:58.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:58.738 -07 000000448 INF: FPGA: Recv ZSGSRD 35542
17-03-17 22:20:58.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:58.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:20:58.748 -07 000000438 INF: FPGA: Recv ZSGSRD 35542
17-03-17 22:20:58.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:58.758 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:20:58.758 -07 000000448 INF: FPGA: Recv ZPIEZORD 31478
17-03-17 22:20:58.768 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:20:58.768 -07 000000610 INF: Z Motor: Piezo is near 47.2 V (nominally 0 to 100 V), expect near 56.2 V, since DAC is at 5.622 V. Piezo Error = -9.0 V.
17-03-17 22:20:58.768 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.7 um, Read 10 ADC samples: Avg = 35543 (-167.8 uncal um), Error = 0.9 uncal um, Median = 35542 (-167.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35541 (-167.8 uncal um), Max = 35550 (-167.8 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 2 (0.0 uncal um)
17-03-17 22:20:58.768 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35543, posNoise = 7, negNoise = 2
17-03-17 22:20:58.768 -07 000000610 INF: Z Motor: After move to -0.168656, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:20:58.768 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 22:20:58.768 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:20:58.768 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:20:58.768 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:20:58.768 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:20:58.768 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:20:58.768 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:20:58.768 -07 000000448 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:20:58.768 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:20:58.768 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:20:58.768 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:20:58.768 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:20:58.768 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:20:58.778 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:20:58.778 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:20:58.778 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:20:58.778 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:20:58.788 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 22:20:58.788 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 22:20:58.788 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 22:20:58.788 -07 000000448 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 22:20:58.788 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 450 450 216 216 37019 150\n [Camera]
17-03-17 22:20:58.988 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:20:59.438 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 642
17-03-17 22:20:59.438 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 642
17-03-17 22:20:59.438 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:20:59.438 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:20:59.438 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 3023638688, 0x0, 391868352) start.
17-03-17 22:20:59.438 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 642
17-03-17 22:20:59.438 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 642
17-03-17 22:20:59.438 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:20:59.438 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:20:59.448 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 22:20:59.628 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37019 835
17-03-17 22:20:59.898 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 456 ms.
17-03-17 22:20:59.898 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 456 ms.
17-03-17 22:20:59.898 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:20:59.898 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning grn on 985
17-03-17 22:20:59.898 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 3023638688, 0x0, 391868352) end. Duration was 459 ms.
17-03-17 22:20:59.898 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 460 ms.
17-03-17 22:20:59.898 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:20:59.908 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 22:20:59.908 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 22:20:59.908 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 467 ms.
17-03-17 22:20:59.918 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 471 ms.
17-03-17 22:20:59.998 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1201
17-03-17 22:20:59.998 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1201
17-03-17 22:20:59.998 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:20:59.998 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1201
17-03-17 22:20:59.998 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1201
17-03-17 22:20:59.998 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:21:00.008 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:21:00.008 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 2952794160, 0x0, 391868352) start.
17-03-17 22:21:00.008 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:21:00.008 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2988216424, 0x0, 418435064) start.
17-03-17 22:21:00.188 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP 1394
17-03-17 22:21:00.188 -07 000000623 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:21:00.188 -07 000000610 INF: FPGA: 'CAMDBLSNAP 450 450 216 216 37019 150' command took 2 ms to send, 1396 ms to get response, and 1401 ms overall
17-03-17 22:21:00.188 -07 000000610 INF: Skipping AutoFocus in Tile 12: adopting Best-Z from the cache: -0.169357
17-03-17 22:21:00.188 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.16936 mm
17-03-17 22:21:00.188 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:21:00.198 -07 000000482 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-17 22:21:00.198 -07 000000482 INF: Y Motor: Moving to 69.0426 mm, started at 68.2051 mm, delta = 0.8375 mm
17-03-17 22:21:00.198 -07 000000618 INF: Z Motor: Entering MoveAbsStepped (DAC = 36996, sync = True, waitForSettling = False)
17-03-17 22:21:00.198 -07 000000618 INF: Z Motor: Moving to -0.169357 mm, started at -0.168659 mm, distance = -0.70 um
17-03-17 22:21:00.208 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:21:00.208 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 62, FrontChillerTemperature: 4.016692,
17-03-17 22:21:00.208 -07 000000576 INF: FPGA: Recv YRDPOS 139684
17-03-17 22:21:00.218 -07 000000618 INF: FPGA: Xmit ZDACW 36996\n [Z Motor]
17-03-17 22:21:00.218 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-17 22:21:00.218 -07 000000482 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:21:00.218 -07 000000482 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:21:00.218 -07 000000482 INF: Y Motor: Moving 1340 steps-15
17-03-17 22:21:00.218 -07 000000480 INF: FPGA: Recv ZDACW
17-03-17 22:21:00.228 -07 000000618 INF: FPGA: 'ZDACW 36996' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-17 22:21:00.238 -07 000000482 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:21:00.248 -07 000000618 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:21:00.248 -07 000000459 INF: FPGA: Recv ZDACR 36996
17-03-17 22:21:00.258 -07 000000618 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:21:00.258 -07 000000618 INF: Z Motor: MoveAbsStepped took 57 ms (did NOT wait for settling yet))
17-03-17 22:21:00.388 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 2952794160, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 22:21:00.388 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 22:21:00.388 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:21:00.388 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2988216424, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 22:21:00.388 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 22:21:00.388 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:21:00.388 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:21:00.388 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 22:21:00.388 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:21:00.398 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 22:21:00.608 -07 000000462 INF: FPGA: Recv YMVTILE
17-03-17 22:21:00.608 -07 000000482 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-17 22:21:00.658 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:21:00.658 -07 000000462 INF: FPGA: Recv YRDPOS 141368
17-03-17 22:21:00.668 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:21:00.668 -07 000000482 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:21:00.668 -07 000000482 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-17 22:21:00.668 -07 000000482 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.838 mm, average velocity = 2.110 mm/sec
17-03-17 22:21:01.618 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:21:01.618 -07 000000448 INF: FPGA: Recv YRDPOS 141368
17-03-17 22:21:01.628 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:21:01.628 -07 000000482 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:21:01.648 -07 000000482 INF: Y Motor: After move to 69.042610, error = -0.015266, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:21:01.648 -07 000000482 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:21:01.648 -07 000000482 INF: Y Motor: Moved to 69.0273 after 1453 ms (table move)
17-03-17 22:21:01.648 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.169357 mm (DAC = 36996)
17-03-17 22:21:01.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:01.658 -07 000000618 INF: FPGA: Recv ZSGSRD 35651
17-03-17 22:21:01.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 22:21:01.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:01.658 -07 000000462 INF: FPGA: Recv ZSGSRD 35652
17-03-17 22:21:01.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:01.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:01.668 -07 000000486 INF: FPGA: Recv ZSGSRD 35660
17-03-17 22:21:01.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:01.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:01.678 -07 000000482 INF: FPGA: Recv ZSGSRD 35653
17-03-17 22:21:01.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:01.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:01.688 -07 000000459 INF: FPGA: Recv ZSGSRD 35654
17-03-17 22:21:01.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:01.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:01.698 -07 000000561 INF: FPGA: Recv ZSGSRD 35652
17-03-17 22:21:01.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:01.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:01.708 -07 000000576 INF: FPGA: Recv ZSGSRD 35658
17-03-17 22:21:01.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:01.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:01.718 -07 000000551 INF: FPGA: Recv ZSGSRD 35654
17-03-17 22:21:01.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:01.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:01.728 -07 000000438 INF: FPGA: Recv ZSGSRD 35654
17-03-17 22:21:01.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:01.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:01.738 -07 000000462 INF: FPGA: Recv ZSGSRD 35656
17-03-17 22:21:01.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:01.748 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:21:01.748 -07 000000623 INF: FPGA: Recv ZPIEZORD 31659
17-03-17 22:21:01.758 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:01.758 -07 000000610 INF: Z Motor: Piezo is near 47.6 V (nominally 0 to 100 V), expect near 56.5 V, since DAC is at 5.645 V. Piezo Error = -8.8 V.
17-03-17 22:21:01.758 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.4 um, Read 10 ADC samples: Avg = 35654 (-168.5 uncal um), Error = 0.9 uncal um, Median = 35654 (-168.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35651 (-168.5 uncal um), Max = 35660 (-168.5 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 22:21:01.758 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35654, posNoise = 6, negNoise = 3
17-03-17 22:21:01.758 -07 000000610 INF: Z Motor: After move to -0.169357, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:21:01.758 -07 000000610 INF: Z Motor: Settle wait time = 1454 ms, measure time = 104 ms (allowed 150 ms), total time = 1558 ms
17-03-17 22:21:01.758 -07 000000610 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 22:21:01.808 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1610 ms
17-03-17 22:21:01.808 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:21:01.808 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02734375, Z-position -0.16937221171348. ----------
17-03-17 22:21:01.808 -07 000000610 INF: Cycle	62	Tile	12	Exposure Settings		A	450	G	216	T	216	C	450
17-03-17 22:21:01.808 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36819, sync = True, waitForSettling = True)
17-03-17 22:21:01.808 -07 000000610 INF: Z Motor: Moving to -0.168547 mm, started at -0.169372 mm, distance = 0.83 um
17-03-17 22:21:01.808 -07 000000610 INF: FPGA: Xmit ZDACW 36819\n [Z Motor]
17-03-17 22:21:01.808 -07 000000561 INF: FPGA: Recv ZDACW
17-03-17 22:21:01.818 -07 000000610 INF: FPGA: 'ZDACW 36819' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 22:21:01.818 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:21:01.818 -07 000000459 INF: FPGA: Recv ZDACR 36819
17-03-17 22:21:01.828 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:01.828 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:21:01.968 -07 000000486 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:21:01.968 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 61. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=992, R2=1018, Total=2010. Warn if over 250 bubbles per interval.
17-03-17 22:21:01.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:01.978 -07 000000482 INF: FPGA: Recv ZSGSRD 35527
17-03-17 22:21:01.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:21:01.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:01.988 -07 000000438 INF: FPGA: Recv ZSGSRD 35535
17-03-17 22:21:01.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:01.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:01.998 -07 000000448 INF: FPGA: Recv ZSGSRD 35532
17-03-17 22:21:02.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:02.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:02.008 -07 000000551 INF: FPGA: Recv ZSGSRD 35530
17-03-17 22:21:02.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:02.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:02.018 -07 000000569 INF: FPGA: Recv ZSGSRD 35525
17-03-17 22:21:02.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:02.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:02.028 -07 000000382 INF: FPGA: Recv ZSGSRD 35524
17-03-17 22:21:02.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:02.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:02.038 -07 000000382 INF: FPGA: Recv ZSGSRD 35527
17-03-17 22:21:02.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:02.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:02.048 -07 000000462 INF: FPGA: Recv ZSGSRD 35525
17-03-17 22:21:02.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:02.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:02.058 -07 000000382 INF: FPGA: Recv ZSGSRD 35529
17-03-17 22:21:02.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:02.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:02.068 -07 000000382 INF: FPGA: Recv ZSGSRD 35532
17-03-17 22:21:02.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:02.078 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:21:02.078 -07 000000459 INF: FPGA: Recv ZPIEZORD 31488
17-03-17 22:21:02.088 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:02.088 -07 000000610 INF: Z Motor: Piezo is near 47.3 V (nominally 0 to 100 V), expect near 56.2 V, since DAC is at 5.618 V. Piezo Error = -8.9 V.
17-03-17 22:21:02.088 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.5 um, Read 10 ADC samples: Avg = 35529 (-167.7 uncal um), Error = 0.8 uncal um, Median = 35528 (-167.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35524 (-167.7 uncal um), Max = 35535 (-167.7 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 22:21:02.088 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35529, posNoise = 6, negNoise = 5
17-03-17 22:21:02.088 -07 000000610 INF: Z Motor: After move to -0.168547, error = -0.000023, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:21:02.088 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 22:21:02.088 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:21:02.088 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:21:02.088 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:21:02.088 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:21:02.088 -07 000000482 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:21:02.088 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:21:02.088 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:21:02.088 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:21:02.088 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:21:02.088 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:21:02.088 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:21:02.088 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:21:02.098 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 22:21:02.098 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:21:02.098 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:21:02.098 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:21:02.098 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 22:21:02.098 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 12 ms.
17-03-17 22:21:02.108 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 22:21:02.108 -07 000000482 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 22:21:02.108 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 450 450 216 216 36996 150\n [Camera]
17-03-17 22:21:02.308 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:21:02.758 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 642
17-03-17 22:21:02.758 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 642
17-03-17 22:21:02.758 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:21:02.758 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:21:02.758 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 22:21:02.758 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 642
17-03-17 22:21:02.758 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 642
17-03-17 22:21:02.758 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:21:02.758 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:21:02.758 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) start.
17-03-17 22:21:02.948 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36996 835
17-03-17 22:21:03.098 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning grn on 985
17-03-17 22:21:03.138 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 379 ms.
17-03-17 22:21:03.138 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-17 22:21:03.138 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:21:03.138 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) end. Duration was 376 ms.
17-03-17 22:21:03.138 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 22:21:03.138 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:21:03.138 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:21:03.138 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 22:21:03.138 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:21:03.148 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 22:21:03.318 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1201
17-03-17 22:21:03.318 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1201
17-03-17 22:21:03.318 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:21:03.318 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:21:03.318 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 1476890328, 0x0, 391868352) start.
17-03-17 22:21:03.318 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1201
17-03-17 22:21:03.318 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1201
17-03-17 22:21:03.318 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:21:03.448 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:21:03.448 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) start.
17-03-17 22:21:03.508 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP 1397
17-03-17 22:21:03.508 -07 000000382 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:21:03.508 -07 000000610 INF: FPGA: 'CAMDBLSNAP 450 450 216 216 36996 150' command took 2 ms to send, 1396 ms to get response, and 1404 ms overall
17-03-17 22:21:03.508 -07 000000610 INF: Skipping AutoFocus in Tile 13: adopting Best-Z from the cache: -0.168825
17-03-17 22:21:03.508 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.16882 mm
17-03-17 22:21:03.508 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:21:03.518 -07 000000382 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-17 22:21:03.518 -07 000000382 INF: Y Motor: Moving to 69.8726 mm, started at 69.0273 mm, delta = 0.8453 mm
17-03-17 22:21:03.518 -07 000000459 INF: Z Motor: Entering MoveAbsStepped (DAC = 36880, sync = True, waitForSettling = False)
17-03-17 22:21:03.518 -07 000000459 INF: Z Motor: Moving to -0.168826 mm, started at -0.168569 mm, distance = -0.26 um
17-03-17 22:21:03.518 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:21:03.518 -07 000000462 INF: FPGA: Recv YRDPOS 141368
17-03-17 22:21:03.528 -07 000000382 INF: FPGA: 'YRDPOS' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:03.528 -07 000000459 INF: FPGA: Xmit ZDACW 36880\n [Z Motor]
17-03-17 22:21:03.528 -07 000000382 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:21:03.528 -07 000000382 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:21:03.528 -07 000000382 INF: Y Motor: Moving 1352 steps-31
17-03-17 22:21:03.528 -07 000000462 INF: FPGA: Recv ZDACW
17-03-17 22:21:03.538 -07 000000459 INF: FPGA: 'ZDACW 36880' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-17 22:21:03.538 -07 000000459 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:21:03.538 -07 000000462 INF: FPGA: Recv ZDACR 36880
17-03-17 22:21:03.548 -07 000000382 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:21:03.548 -07 000000459 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:03.548 -07 000000459 INF: Z Motor: MoveAbsStepped took 29 ms (did NOT wait for settling yet))
17-03-17 22:21:03.708 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 1476890328, 0x0, 391868352) end. Duration was 393 ms.
17-03-17 22:21:03.708 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 22:21:03.708 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:21:03.708 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:21:03.708 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 22:21:03.828 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 22:21:03.828 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 22:21:03.828 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:21:03.828 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:21:03.838 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 518 ms.
17-03-17 22:21:03.918 -07 000000482 INF: FPGA: Recv YMVTILE
17-03-17 22:21:03.918 -07 000000382 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 22:21:03.958 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:21:03.968 -07 000000501 INF: FPGA: Recv YRDPOS 143079
17-03-17 22:21:03.968 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:21:03.968 -07 000000382 INF: Y Motor: Encoder = 143079 = motor step 111780.5 = 69.8628 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:21:03.968 -07 000000382 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-17 22:21:03.968 -07 000000382 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.845 mm, average velocity = 2.129 mm/sec
17-03-17 22:21:04.918 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:21:04.918 -07 000000459 INF: FPGA: Recv YRDPOS 143080
17-03-17 22:21:04.928 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:21:04.928 -07 000000382 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:21:04.948 -07 000000382 INF: Y Motor: After move to 69.872612, error = -0.009331, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:21:04.948 -07 000000382 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 22:21:04.948 -07 000000382 INF: Y Motor: Moved to 69.8633 after 1432 ms (table move)
17-03-17 22:21:04.948 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.168826 mm (DAC = 36880)
17-03-17 22:21:04.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:04.948 -07 000000459 INF: FPGA: Recv ZSGSRD 35567
17-03-17 22:21:04.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 22:21:04.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:04.958 -07 000000501 INF: FPGA: Recv ZSGSRD 35560
17-03-17 22:21:04.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:04.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:04.968 -07 000000501 INF: FPGA: Recv ZSGSRD 35571
17-03-17 22:21:04.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:04.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:04.978 -07 000000501 INF: FPGA: Recv ZSGSRD 35575
17-03-17 22:21:04.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:04.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:04.988 -07 000000459 INF: FPGA: Recv ZSGSRD 35571
17-03-17 22:21:04.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:04.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:04.998 -07 000000459 INF: FPGA: Recv ZSGSRD 35573
17-03-17 22:21:05.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:05.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:05.008 -07 000000458 INF: FPGA: Recv ZSGSRD 35569
17-03-17 22:21:05.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:05.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:05.018 -07 000000458 INF: FPGA: Recv ZSGSRD 35570
17-03-17 22:21:05.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:05.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:05.028 -07 000000459 INF: FPGA: Recv ZSGSRD 35565
17-03-17 22:21:05.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:05.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:05.038 -07 000000569 INF: FPGA: Recv ZSGSRD 35566
17-03-17 22:21:05.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:05.048 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:21:05.048 -07 000000569 INF: FPGA: Recv ZPIEZORD 31557
17-03-17 22:21:05.058 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:05.058 -07 000000610 INF: Z Motor: Piezo is near 47.4 V (nominally 0 to 100 V), expect near 56.3 V, since DAC is at 5.628 V. Piezo Error = -8.9 V.
17-03-17 22:21:05.058 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.8 um, Read 10 ADC samples: Avg = 35569 (-168.0 uncal um), Error = 0.9 uncal um, Median = 35570 (-168.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 35560 (-167.9 uncal um), Max = 35575 (-168.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 22:21:05.058 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35569, posNoise = 6, negNoise = 9
17-03-17 22:21:05.058 -07 000000610 INF: Z Motor: After move to -0.168826, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:21:05.058 -07 000000610 INF: Z Motor: Settle wait time = 1434 ms, measure time = 105 ms (allowed 150 ms), total time = 1539 ms
17-03-17 22:21:05.058 -07 000000610 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 22:21:05.108 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1591 ms
17-03-17 22:21:05.108 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:21:05.108 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86328125, Z-position -0.16882615368143. ----------
17-03-17 22:21:05.108 -07 000000610 INF: Cycle	62	Tile	13	Exposure Settings		A	450	G	216	T	216	C	450
17-03-17 22:21:05.108 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36703, sync = True, waitForSettling = True)
17-03-17 22:21:05.108 -07 000000610 INF: Z Motor: Moving to -0.168016 mm, started at -0.168826 mm, distance = 0.81 um
17-03-17 22:21:05.108 -07 000000610 INF: FPGA: Xmit ZDACW 36703\n [Z Motor]
17-03-17 22:21:05.108 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 22:21:05.118 -07 000000610 INF: FPGA: 'ZDACW 36703' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 22:21:05.118 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:21:05.118 -07 000000462 INF: FPGA: Recv ZDACR 36703
17-03-17 22:21:05.128 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:05.128 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:21:05.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:05.278 -07 000000501 INF: FPGA: Recv ZSGSRD 35447
17-03-17 22:21:05.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:21:05.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:05.298 -07 000000462 INF: FPGA: Recv ZSGSRD 35447
17-03-17 22:21:05.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:21:05.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:05.308 -07 000000561 INF: FPGA: Recv ZSGSRD 35444
17-03-17 22:21:05.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:05.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:05.318 -07 000000459 INF: FPGA: Recv ZSGSRD 35446
17-03-17 22:21:05.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:05.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:05.328 -07 000000561 INF: FPGA: Recv ZSGSRD 35440
17-03-17 22:21:05.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:05.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:05.338 -07 000000459 INF: FPGA: Recv ZSGSRD 35440
17-03-17 22:21:05.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:05.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:05.348 -07 000000561 INF: FPGA: Recv ZSGSRD 35449
17-03-17 22:21:05.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:05.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:05.358 -07 000000561 INF: FPGA: Recv ZSGSRD 35444
17-03-17 22:21:05.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:05.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:05.368 -07 000000561 INF: FPGA: Recv ZSGSRD 35443
17-03-17 22:21:05.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:05.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:05.378 -07 000000561 INF: FPGA: Recv ZSGSRD 35447
17-03-17 22:21:05.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:05.388 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:21:05.388 -07 000000459 INF: FPGA: Recv ZPIEZORD 31381
17-03-17 22:21:05.398 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:05.398 -07 000000610 INF: Z Motor: Piezo is near 47.0 V (nominally 0 to 100 V), expect near 56.0 V, since DAC is at 5.601 V. Piezo Error = -9.0 V.
17-03-17 22:21:05.398 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.0 um, Read 10 ADC samples: Avg = 35445 (-167.2 uncal um), Error = 0.9 uncal um, Median = 35445 (-167.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35440 (-167.1 uncal um), Max = 35449 (-167.2 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 22:21:05.398 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35445, posNoise = 4, negNoise = 5
17-03-17 22:21:05.398 -07 000000610 INF: Z Motor: After move to -0.168016, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:21:05.398 -07 000000610 INF: Z Motor: MoveAbsStepped took 286 ms)
17-03-17 22:21:05.398 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:21:05.398 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:21:05.398 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:21:05.398 -07 000000551 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:21:05.398 -07 000000482 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:21:05.398 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:21:05.398 -07 000000486 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:21:05.398 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:21:05.398 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:21:05.398 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:21:05.398 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:21:05.398 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:21:05.408 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:21:05.408 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:21:05.408 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:21:05.408 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:21:05.418 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 22:21:05.418 -07 000000482 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 22:21:05.418 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 22:21:05.418 -07 000000486 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 22:21:05.428 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 450 450 216 216 36880 150\n [Camera]
17-03-17 22:21:05.608 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 62, FrontChillerTemperature: 4.039839,
17-03-17 22:21:05.628 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:21:06.078 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 642
17-03-17 22:21:06.078 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 642
17-03-17 22:21:06.078 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:21:06.078 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:21:06.078 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 22:21:06.078 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 642
17-03-17 22:21:06.078 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 642
17-03-17 22:21:06.078 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:21:06.078 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:21:06.078 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-17 22:21:06.268 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36880 835
17-03-17 22:21:06.418 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP turning grn on 985
17-03-17 22:21:06.448 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 372 ms.
17-03-17 22:21:06.448 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-17 22:21:06.448 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:21:06.448 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 22:21:06.448 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-17 22:21:06.448 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:21:06.458 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:21:06.458 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:21:06.458 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 22:21:06.468 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-17 22:21:06.638 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1201
17-03-17 22:21:06.638 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1201
17-03-17 22:21:06.638 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:21:06.638 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:21:06.638 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start.
17-03-17 22:21:06.638 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1201
17-03-17 22:21:06.638 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1201
17-03-17 22:21:06.638 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:21:06.638 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:21:06.638 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) start.
17-03-17 22:21:06.828 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP 1394
17-03-17 22:21:06.828 -07 000000462 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:21:06.828 -07 000000610 INF: FPGA: 'CAMDBLSNAP 450 450 216 216 36880 150' command took 2 ms to send, 1392 ms to get response, and 1402 ms overall
17-03-17 22:21:06.828 -07 000000610 INF: Skipping AutoFocus in Tile 14: adopting Best-Z from the cache: -0.168486
17-03-17 22:21:06.828 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.16849 mm
17-03-17 22:21:06.828 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:21:06.828 -07 000000458 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-17 22:21:06.828 -07 000000458 INF: Y Motor: Moving to 70.7026 mm, started at 69.8633 mm, delta = 0.8393 mm
17-03-17 22:21:06.828 -07 000000458 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:21:06.828 -07 000000561 INF: Z Motor: Entering MoveAbsStepped (DAC = 36806, sync = True, waitForSettling = False)
17-03-17 22:21:06.828 -07 000000561 INF: Z Motor: Moving to -0.168487 mm, started at -0.168030 mm, distance = -0.46 um
17-03-17 22:21:06.838 -07 000000561 INF: FPGA: Xmit ZDACW 36806\n [Z Motor]
17-03-17 22:21:06.838 -07 000000462 INF: FPGA: Recv YRDPOS 143080
17-03-17 22:21:06.838 -07 000000458 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 22:21:06.838 -07 000000458 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:21:06.838 -07 000000458 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:21:06.838 -07 000000458 INF: Y Motor: Moving 1343 steps-20
17-03-17 22:21:06.838 -07 000000462 INF: FPGA: Recv ZDACW
17-03-17 22:21:06.848 -07 000000561 INF: FPGA: 'ZDACW 36806' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 22:21:06.848 -07 000000561 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:21:06.848 -07 000000462 INF: FPGA: Recv ZDACR 36806
17-03-17 22:21:06.858 -07 000000561 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:06.858 -07 000000561 INF: Z Motor: MoveAbsStepped took 22 ms (did NOT wait for settling yet))
17-03-17 22:21:06.858 -07 000000458 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:21:06.968 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:21:06.968 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 61. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=992, R2=1018, Total=2010. Warn if over 250 bubbles per interval.
17-03-17 22:21:07.018 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 379 ms.
17-03-17 22:21:07.018 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 22:21:07.018 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:21:07.018 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) end. Duration was 380 ms.
17-03-17 22:21:07.018 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-17 22:21:07.018 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:21:07.018 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:21:07.018 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 22:21:07.028 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:21:07.028 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 22:21:07.228 -07 000000561 INF: FPGA: Recv YMVTILE
17-03-17 22:21:07.228 -07 000000458 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 22:21:07.268 -07 000000458 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:21:07.278 -07 000000551 INF: FPGA: Recv YRDPOS 144770
17-03-17 22:21:07.278 -07 000000458 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 22:21:07.278 -07 000000458 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:21:07.278 -07 000000458 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-17 22:21:07.278 -07 000000458 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.839 mm, average velocity = 2.109 mm/sec
17-03-17 22:21:08.228 -07 000000458 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:21:08.228 -07 000000561 INF: FPGA: Recv YRDPOS 144770
17-03-17 22:21:08.238 -07 000000458 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:08.238 -07 000000458 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:21:08.258 -07 000000458 INF: Y Motor: After move to 70.702606, error = -0.014130, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:21:08.258 -07 000000458 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:21:08.258 -07 000000458 INF: Y Motor: Moved to 70.6885 after 1426 ms (table move)
17-03-17 22:21:08.258 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.168487 mm (DAC = 36806)
17-03-17 22:21:08.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:08.268 -07 000000458 INF: FPGA: Recv ZSGSRD 35520
17-03-17 22:21:08.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 22:21:08.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:08.268 -07 000000551 INF: FPGA: Recv ZSGSRD 35517
17-03-17 22:21:08.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:08.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:08.278 -07 000000551 INF: FPGA: Recv ZSGSRD 35511
17-03-17 22:21:08.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:08.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:08.288 -07 000000486 INF: FPGA: Recv ZSGSRD 35524
17-03-17 22:21:08.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:08.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:08.298 -07 000000551 INF: FPGA: Recv ZSGSRD 35523
17-03-17 22:21:08.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:08.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:08.308 -07 000000462 INF: FPGA: Recv ZSGSRD 35511
17-03-17 22:21:08.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:08.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:08.318 -07 000000551 INF: FPGA: Recv ZSGSRD 35513
17-03-17 22:21:08.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:08.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:08.328 -07 000000551 INF: FPGA: Recv ZSGSRD 35512
17-03-17 22:21:08.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:08.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:08.338 -07 000000551 INF: FPGA: Recv ZSGSRD 35521
17-03-17 22:21:08.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:08.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:08.348 -07 000000561 INF: FPGA: Recv ZSGSRD 35514
17-03-17 22:21:08.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:08.358 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:21:08.358 -07 000000462 INF: FPGA: Recv ZPIEZORD 31481
17-03-17 22:21:08.368 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:08.368 -07 000000610 INF: Z Motor: Piezo is near 47.3 V (nominally 0 to 100 V), expect near 56.2 V, since DAC is at 5.616 V. Piezo Error = -8.9 V.
17-03-17 22:21:08.368 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.5 um, Read 10 ADC samples: Avg = 35517 (-167.6 uncal um), Error = 0.9 uncal um, Median = 35516 (-167.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35511 (-167.6 uncal um), Max = 35524 (-167.7 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 22:21:08.368 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35517, posNoise = 7, negNoise = 6
17-03-17 22:21:08.368 -07 000000610 INF: Z Motor: After move to -0.168487, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:21:08.368 -07 000000610 INF: Z Motor: Settle wait time = 1429 ms, measure time = 104 ms (allowed 150 ms), total time = 1533 ms
17-03-17 22:21:08.368 -07 000000610 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 22:21:08.418 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1585 ms
17-03-17 22:21:08.418 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:21:08.418 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.6884765625, Z-position -0.168492094650059. ----------
17-03-17 22:21:08.418 -07 000000610 INF: Cycle	62	Tile	14	Exposure Settings		A	450	G	216	T	216	C	450
17-03-17 22:21:08.418 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36629, sync = True, waitForSettling = True)
17-03-17 22:21:08.418 -07 000000610 INF: Z Motor: Moving to -0.167677 mm, started at -0.168492 mm, distance = 0.82 um
17-03-17 22:21:08.418 -07 000000610 INF: FPGA: Xmit ZDACW 36629\n [Z Motor]
17-03-17 22:21:08.418 -07 000000551 INF: FPGA: Recv ZDACW
17-03-17 22:21:08.428 -07 000000610 INF: FPGA: 'ZDACW 36629' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 22:21:08.428 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:21:08.428 -07 000000561 INF: FPGA: Recv ZDACR 36629
17-03-17 22:21:08.438 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:08.438 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:21:08.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:08.588 -07 000000561 INF: FPGA: Recv ZSGSRD 35393
17-03-17 22:21:08.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:21:08.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:08.598 -07 000000462 INF: FPGA: Recv ZSGSRD 35393
17-03-17 22:21:08.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:21:08.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:08.608 -07 000000551 INF: FPGA: Recv ZSGSRD 35387
17-03-17 22:21:08.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:08.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:08.618 -07 000000486 INF: FPGA: Recv ZSGSRD 35393
17-03-17 22:21:08.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:08.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:08.628 -07 000000462 INF: FPGA: Recv ZSGSRD 35393
17-03-17 22:21:08.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:08.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:08.638 -07 000000486 INF: FPGA: Recv ZSGSRD 35391
17-03-17 22:21:08.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:08.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:08.648 -07 000000462 INF: FPGA: Recv ZSGSRD 35392
17-03-17 22:21:08.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:08.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:08.658 -07 000000486 INF: FPGA: Recv ZSGSRD 35392
17-03-17 22:21:08.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:08.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:08.668 -07 000000462 INF: FPGA: Recv ZSGSRD 35390
17-03-17 22:21:08.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:08.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:08.678 -07 000000486 INF: FPGA: Recv ZSGSRD 35391
17-03-17 22:21:08.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:08.688 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:21:08.688 -07 000000458 INF: FPGA: Recv ZPIEZORD 31333
17-03-17 22:21:08.698 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:08.698 -07 000000610 INF: Z Motor: Piezo is near 46.9 V (nominally 0 to 100 V), expect near 55.9 V, since DAC is at 5.589 V. Piezo Error = -9.0 V.
17-03-17 22:21:08.698 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.7 um, Read 10 ADC samples: Avg = 35392 (-166.8 uncal um), Error = 0.9 uncal um, Median = 35392 (-166.8 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 35387 (-166.8 uncal um), Max = 35393 (-166.8 uncal um), Pos Noise = 1 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 22:21:08.698 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35392, posNoise = 1, negNoise = 5
17-03-17 22:21:08.698 -07 000000610 INF: Z Motor: After move to -0.167677, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:21:08.698 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 22:21:08.698 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:21:08.698 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:21:08.698 -07 000000551 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:21:08.698 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:21:08.698 -07 000000458 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:21:08.698 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:21:08.698 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:21:08.698 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:21:08.698 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:21:08.698 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:21:08.698 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:21:08.698 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:21:08.698 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 22:21:08.698 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:21:08.708 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:21:08.708 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:21:08.718 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 12 ms.
17-03-17 22:21:08.718 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 22:21:08.718 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 13 ms.
17-03-17 22:21:08.718 -07 000000458 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 22:21:08.718 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 450 450 216 216 36806 150\n [Camera]
17-03-17 22:21:08.918 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:21:09.368 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 642
17-03-17 22:21:09.368 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 642
17-03-17 22:21:09.368 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:21:09.368 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:21:09.368 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 22:21:09.368 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 642
17-03-17 22:21:09.368 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 642
17-03-17 22:21:09.368 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:21:09.498 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:21:09.498 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 22:21:09.558 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36806 835
17-03-17 22:21:09.708 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning grn on 985
17-03-17 22:21:09.758 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 385 ms.
17-03-17 22:21:09.758 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 22:21:09.758 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:21:09.758 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:21:09.758 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 22:21:09.868 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 373 ms.
17-03-17 22:21:09.868 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-17 22:21:09.868 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:21:09.878 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:21:09.878 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 507 ms.
17-03-17 22:21:09.928 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1201
17-03-17 22:21:09.928 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1201
17-03-17 22:21:09.928 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:21:09.928 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:21:09.928 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1441468064, 0x0, 391868352) start.
17-03-17 22:21:09.928 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1201
17-03-17 22:21:09.928 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1201
17-03-17 22:21:09.938 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:21:09.938 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:21:09.938 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1476890328, 0x0, 418435064) start.
17-03-17 22:21:10.118 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP 1394
17-03-17 22:21:10.118 -07 000000576 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:21:10.118 -07 000000610 INF: FPGA: 'CAMDBLSNAP 450 450 216 216 36806 150' command took 2 ms to send, 1396 ms to get response, and 1400 ms overall
17-03-17 22:21:10.118 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 22:21:10.118 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.6884765625, Z-Position -0.167689068132339. ------
17-03-17 22:21:10.128 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:21:10.128 -07 000000551 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.17405 mm
17-03-17 22:21:10.128 -07 000000551 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:21:10.128 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:21:10.128 -07 000000486 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-17 22:21:10.128 -07 000000486 INF: Y Motor: Moving to 71.5326 mm, started at 70.6885 mm, delta = 0.8441 mm
17-03-17 22:21:10.128 -07 000000576 INF: Z Motor: Entering MoveAbsStepped (DAC = 38021, sync = True, waitForSettling = False)
17-03-17 22:21:10.128 -07 000000576 INF: Z Motor: Moving to -0.174049 mm, started at -0.167689 mm, distance = -6.36 um
17-03-17 22:21:10.138 -07 000000576 INF: FPGA: Xmit ZDACW 38021\n [Z Motor]
17-03-17 22:21:10.138 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:21:10.138 -07 000000623 INF: FPGA: Recv ZDACW
17-03-17 22:21:10.148 -07 000000462 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:21:10.148 -07 000000576 INF: FPGA: 'ZDACW 38021' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:21:10.158 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:21:10.158 -07 000000458 INF: FPGA: Recv YRDPOS 144770
17-03-17 22:21:10.168 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-17 22:21:10.168 -07 000000486 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:21:10.168 -07 000000486 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:21:10.168 -07 000000486 INF: Y Motor: Moving 1351 steps-29
17-03-17 22:21:10.168 -07 000000576 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:21:10.168 -07 000000458 INF: FPGA: Recv ZDACR 38021
17-03-17 22:21:10.178 -07 000000576 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:21:10.178 -07 000000576 INF: Z Motor: MoveAbsStepped took 40 ms (did NOT wait for settling yet))
17-03-17 22:21:10.178 -07 000000486 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:21:10.308 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1441468064, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 22:21:10.308 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 22:21:10.308 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:21:10.318 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:21:10.318 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 22:21:10.318 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1476890328, 0x0, 418435064) end. Duration was 380 ms.
17-03-17 22:21:10.318 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-17 22:21:10.318 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:21:10.318 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:21:10.328 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 22:21:10.348 -07 000000438 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:21:10.348 -07 000000462 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 212 ms overall
17-03-17 22:21:10.548 -07 000000623 INF: FPGA: Recv YMVTILE
17-03-17 22:21:10.548 -07 000000486 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 388 ms overall
17-03-17 22:21:10.588 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:21:10.598 -07 000000458 INF: FPGA: Recv YRDPOS 146471
17-03-17 22:21:10.598 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 22:21:10.598 -07 000000486 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:21:10.598 -07 000000486 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 22:21:10.598 -07 000000486 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.844 mm, average velocity = 2.176 mm/sec
17-03-17 22:21:10.968 -07 000000448 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 62, FrontChillerTemperature: 4.016692,
17-03-17 22:21:11.548 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:21:11.548 -07 000000448 INF: FPGA: Recv YRDPOS 146471
17-03-17 22:21:11.558 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:21:11.558 -07 000000486 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:21:11.578 -07 000000486 INF: Y Motor: After move to 71.532608, error = -0.013565, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:21:11.578 -07 000000486 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:21:11.578 -07 000000486 INF: Y Motor: Moved to 71.5190 after 1446 ms (table move)
17-03-17 22:21:11.578 -07 000000551 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174049 mm (DAC = 38021)
17-03-17 22:21:11.578 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:11.588 -07 000000623 INF: FPGA: Recv ZSGSRD 36386
17-03-17 22:21:11.588 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-17 22:21:11.598 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:11.598 -07 000000576 INF: FPGA: Recv ZSGSRD 36379
17-03-17 22:21:11.608 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-17 22:21:11.608 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:11.608 -07 000000561 INF: FPGA: Recv ZSGSRD 36385
17-03-17 22:21:11.618 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:11.638 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:11.638 -07 000000448 INF: FPGA: Recv ZSGSRD 36381
17-03-17 22:21:11.648 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:21:11.648 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:11.648 -07 000000486 INF: FPGA: Recv ZSGSRD 36380
17-03-17 22:21:11.658 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:11.668 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:11.668 -07 000000462 INF: FPGA: Recv ZSGSRD 36381
17-03-17 22:21:11.678 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:21:11.678 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:11.678 -07 000000618 INF: FPGA: Recv ZSGSRD 36386
17-03-17 22:21:11.688 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:11.698 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:11.698 -07 000000438 INF: FPGA: Recv ZSGSRD 36384
17-03-17 22:21:11.708 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:21:11.708 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:11.708 -07 000000462 INF: FPGA: Recv ZSGSRD 36388
17-03-17 22:21:11.718 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:11.718 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:11.718 -07 000000618 INF: FPGA: Recv ZSGSRD 36381
17-03-17 22:21:11.728 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:11.728 -07 000000551 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:21:11.728 -07 000000438 INF: FPGA: Recv ZPIEZORD 32656
17-03-17 22:21:11.738 -07 000000551 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:11.738 -07 000000551 INF: Z Motor: Piezo is near 49.8 V (nominally 0 to 100 V), expect near 58.0 V, since DAC is at 5.802 V. Piezo Error = -8.3 V.
17-03-17 22:21:11.738 -07 000000551 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.0 um, Read 10 ADC samples: Avg = 36383 (-173.2 uncal um), Error = 0.9 uncal um, Median = 36382 (-173.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 36379 (-173.1 uncal um), Max = 36388 (-173.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 22:21:11.738 -07 000000551 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36383, posNoise = 5, negNoise = 4
17-03-17 22:21:11.738 -07 000000551 INF: Z Motor: After move to -0.174049, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:21:11.738 -07 000000551 INF: Z Motor: Settle wait time = 1449 ms, measure time = 151 ms (allowed 150 ms), total time = 1600 ms
17-03-17 22:21:11.738 -07 000000551 INF: Z Motor: Warning: Actual position measuring time = 151 ms, longer than max expected time of 150 ms
17-03-17 22:21:11.738 -07 000000551 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1607 ms
17-03-17 22:21:11.738 -07 000000551 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:21:11.738 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:21:11.738 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:21:11.738 -07 000000486 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:21:11.738 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:21:11.738 -07 000000551 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:21:11.738 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:21:11.748 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 22:21:11.748 -07 000000551 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:21:11.748 -07 000000551 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 22:21:11.748 -07 000000551 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:21:11.758 -07 000000551 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 22:21:11.758 -07 000000551 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 22:21:11.758 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:21:11.808 -07 000000618 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:21:11.968 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:21:11.968 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 61. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=992, R2=1018, Total=2010. Warn if over 250 bubbles per interval.
17-03-17 22:21:12.008 -07 000000618 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:21:12.008 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:21:12.018 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:21:12.018 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 22:21:12.048 -07 000000551 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:21:12.048 -07 000000462 INF: FPGA: Recv CAMSNAP
17-03-17 22:21:12.048 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 274 ms to get response, and 285 ms overall
17-03-17 22:21:12.138 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 22:21:12.138 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:21:12.138 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:21:12.138 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 22:21:12.248 -07 000000486 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:21:12.248 -07 000000438 INF: Autofocus start
17-03-17 22:21:12.248 -07 000000438 INF: MeasureProfile start
17-03-17 22:21:12.248 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:21:12.258 -07 000000486 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:21:12.258 -07 000000486 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:21:12.258 -07 000000438 INF: MeasureProfile done
17-03-17 22:21:12.258 -07 000000438 INF: X=80  Z correction [um]=0.337546
17-03-17 22:21:12.258 -07 000000438 INF: Autofocus finished
17-03-17 22:21:12.458 -07 000000438 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:21:12.458 -07 000000486 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:21:12.458 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.51904296875, Z-position -0.174055462364824. ----------
17-03-17 22:21:12.458 -07 000000610 INF: Cycle	62	Tile	15	Exposure Settings		A	450	G	216	T	216	C	450
17-03-17 22:21:12.468 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36607, sync = True, waitForSettling = True)
17-03-17 22:21:12.468 -07 000000610 INF: Z Motor: Moving to -0.167576 mm, started at -0.174055 mm, distance = 6.48 um
17-03-17 22:21:12.468 -07 000000610 INF: FPGA: Xmit ZDACW 36607\n [Z Motor]
17-03-17 22:21:12.468 -07 000000486 INF: FPGA: Recv ZDACW
17-03-17 22:21:12.478 -07 000000610 INF: FPGA: 'ZDACW 36607' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:12.478 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:21:12.478 -07 000000551 INF: FPGA: Recv ZDACR 36607
17-03-17 22:21:12.488 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:12.488 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:21:12.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:12.638 -07 000000462 INF: FPGA: Recv ZSGSRD 35374
17-03-17 22:21:12.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:21:12.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:12.648 -07 000000438 INF: FPGA: Recv ZSGSRD 35374
17-03-17 22:21:12.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:12.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:12.658 -07 000000551 INF: FPGA: Recv ZSGSRD 35376
17-03-17 22:21:12.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:12.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:12.668 -07 000000438 INF: FPGA: Recv ZSGSRD 35371
17-03-17 22:21:12.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:12.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:12.678 -07 000000486 INF: FPGA: Recv ZSGSRD 35373
17-03-17 22:21:12.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:12.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:12.688 -07 000000551 INF: FPGA: Recv ZSGSRD 35374
17-03-17 22:21:12.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:12.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:12.698 -07 000000486 INF: FPGA: Recv ZSGSRD 35374
17-03-17 22:21:12.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:12.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:12.708 -07 000000551 INF: FPGA: Recv ZSGSRD 35376
17-03-17 22:21:12.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:12.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:12.718 -07 000000486 INF: FPGA: Recv ZSGSRD 35371
17-03-17 22:21:12.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:12.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:12.728 -07 000000618 INF: FPGA: Recv ZSGSRD 35379
17-03-17 22:21:12.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:12.738 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:21:12.738 -07 000000486 INF: FPGA: Recv ZPIEZORD 31301
17-03-17 22:21:12.748 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:12.748 -07 000000610 INF: Z Motor: Piezo is near 46.9 V (nominally 0 to 100 V), expect near 55.9 V, since DAC is at 5.586 V. Piezo Error = -9.0 V.
17-03-17 22:21:12.748 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.6 um, Read 10 ADC samples: Avg = 35374 (-166.7 uncal um), Error = 0.9 uncal um, Median = 35374 (-166.7 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35371 (-166.7 uncal um), Max = 35379 (-166.7 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 22:21:12.748 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35374, posNoise = 5, negNoise = 3
17-03-17 22:21:12.748 -07 000000610 INF: Z Motor: After move to -0.167576, error = 0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:21:12.748 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 22:21:12.748 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:21:12.748 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:21:12.748 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:21:12.748 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:21:12.748 -07 000000486 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:21:12.748 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:21:12.748 -07 000000551 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:21:12.748 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 22:21:12.748 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:21:12.748 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:21:12.748 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:21:12.748 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:21:12.748 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:21:12.748 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:21:12.758 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:21:12.758 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:21:12.758 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 22:21:12.768 -07 000000486 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 22:21:12.768 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 22:21:12.768 -07 000000551 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 22:21:12.768 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 450 450 216 216 36784 150\n [Camera]
17-03-17 22:21:12.968 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:21:13.418 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 642
17-03-17 22:21:13.418 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 642
17-03-17 22:21:13.418 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:21:13.418 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:21:13.418 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-17 22:21:13.418 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 642
17-03-17 22:21:13.418 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 642
17-03-17 22:21:13.418 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:21:13.418 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:21:13.418 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-17 22:21:13.608 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36784 835
17-03-17 22:21:13.758 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning grn on 985
17-03-17 22:21:13.798 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 22:21:13.798 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 22:21:13.798 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:21:13.798 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 22:21:13.798 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 22:21:13.798 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:21:13.808 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 22:21:13.808 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 22:21:13.808 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 22:21:13.808 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 22:21:13.978 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1201
17-03-17 22:21:13.978 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1201
17-03-17 22:21:13.978 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:21:14.098 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1201
17-03-17 22:21:14.098 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1201
17-03-17 22:21:14.098 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:21:14.098 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:21:14.098 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-17 22:21:14.098 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:21:14.098 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 22:21:14.168 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP 1394
17-03-17 22:21:14.168 -07 000000569 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:21:14.168 -07 000000610 INF: FPGA: 'CAMDBLSNAP 450 450 216 216 36784 150' command took 5 ms to send, 1393 ms to get response, and 1400 ms overall
17-03-17 22:21:14.168 -07 000000610 INF: Skipping AutoFocus in Tile 16: adopting Best-Z from the cache: -0.167930
17-03-17 22:21:14.168 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.16793 mm
17-03-17 22:21:14.168 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:21:14.168 -07 000000551 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-17 22:21:14.168 -07 000000551 INF: Y Motor: Moving to 72.3626 mm, started at 71.5190 mm, delta = 0.8436 mm
17-03-17 22:21:14.168 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:21:14.168 -07 000000501 INF: Z Motor: Entering MoveAbsStepped (DAC = 36684, sync = True, waitForSettling = False)
17-03-17 22:21:14.168 -07 000000501 INF: Z Motor: Moving to -0.167929 mm, started at -0.167573 mm, distance = -0.36 um
17-03-17 22:21:14.178 -07 000000501 INF: FPGA: Xmit ZDACW 36684\n [Z Motor]
17-03-17 22:21:14.178 -07 000000459 INF: FPGA: Recv YRDPOS 146471
17-03-17 22:21:14.178 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 22:21:14.178 -07 000000551 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:21:14.178 -07 000000551 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:21:14.178 -07 000000551 INF: Y Motor: Moving 1350 steps-28
17-03-17 22:21:14.178 -07 000000482 INF: FPGA: Recv ZDACW
17-03-17 22:21:14.188 -07 000000501 INF: FPGA: 'ZDACW 36684' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:21:14.188 -07 000000551 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:21:14.198 -07 000000501 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:21:14.198 -07 000000480 INF: FPGA: Recv ZDACR 36684
17-03-17 22:21:14.208 -07 000000501 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:21:14.208 -07 000000501 INF: Z Motor: MoveAbsStepped took 31 ms (did NOT wait for settling yet))
17-03-17 22:21:14.488 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 385 ms.
17-03-17 22:21:14.488 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-17 22:21:14.488 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:21:14.488 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:21:14.488 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 392 ms.
17-03-17 22:21:14.488 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 22:21:14.488 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:21:14.498 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:21:14.498 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 520 ms.
17-03-17 22:21:14.498 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 22:21:14.558 -07 000000462 INF: FPGA: Recv YMVTILE
17-03-17 22:21:14.558 -07 000000551 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 386 ms overall
17-03-17 22:21:14.598 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:21:14.598 -07 000000486 INF: FPGA: Recv YRDPOS 148172
17-03-17 22:21:14.608 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:21:14.608 -07 000000551 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:21:14.608 -07 000000551 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-17 22:21:14.608 -07 000000551 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 386 ms, distance = 0.844 mm, average velocity = 2.185 mm/sec
17-03-17 22:21:15.558 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:21:15.558 -07 000000480 INF: FPGA: Recv YRDPOS 148172
17-03-17 22:21:15.568 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:21:15.568 -07 000000551 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:21:15.588 -07 000000551 INF: Y Motor: After move to 72.362610, error = -0.013000, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:21:15.588 -07 000000551 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:21:15.588 -07 000000551 INF: Y Motor: Moved to 72.3496 after 1415 ms (table move)
17-03-17 22:21:15.588 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.167929 mm (DAC = 36684)
17-03-17 22:21:15.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:15.598 -07 000000480 INF: FPGA: Recv ZSGSRD 35429
17-03-17 22:21:15.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 22:21:15.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:15.598 -07 000000501 INF: FPGA: Recv ZSGSRD 35429
17-03-17 22:21:15.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:15.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:15.608 -07 000000501 INF: FPGA: Recv ZSGSRD 35432
17-03-17 22:21:15.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:15.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:15.618 -07 000000501 INF: FPGA: Recv ZSGSRD 35433
17-03-17 22:21:15.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:15.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:15.628 -07 000000382 INF: FPGA: Recv ZSGSRD 35426
17-03-17 22:21:15.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:15.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:15.638 -07 000000486 INF: FPGA: Recv ZSGSRD 35436
17-03-17 22:21:15.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:15.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:15.648 -07 000000482 INF: FPGA: Recv ZSGSRD 35431
17-03-17 22:21:15.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:15.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:15.658 -07 000000480 INF: FPGA: Recv ZSGSRD 35428
17-03-17 22:21:15.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:15.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:15.668 -07 000000480 INF: FPGA: Recv ZSGSRD 35425
17-03-17 22:21:15.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:15.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:15.678 -07 000000480 INF: FPGA: Recv ZSGSRD 35427
17-03-17 22:21:15.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:15.688 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:21:15.688 -07 000000459 INF: FPGA: Recv ZPIEZORD 31346
17-03-17 22:21:15.698 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:15.698 -07 000000610 INF: Z Motor: Piezo is near 47.0 V (nominally 0 to 100 V), expect near 56.0 V, since DAC is at 5.598 V. Piezo Error = -9.0 V.
17-03-17 22:21:15.698 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.9 um, Read 10 ADC samples: Avg = 35430 (-167.1 uncal um), Error = 0.9 uncal um, Median = 35429 (-167.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35425 (-167.0 uncal um), Max = 35436 (-167.1 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 22:21:15.698 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35430, posNoise = 6, negNoise = 5
17-03-17 22:21:15.698 -07 000000610 INF: Z Motor: After move to -0.167929, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:21:15.698 -07 000000610 INF: Z Motor: Settle wait time = 1418 ms, measure time = 103 ms (allowed 150 ms), total time = 1521 ms
17-03-17 22:21:15.698 -07 000000610 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 22:21:15.748 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1574 ms
17-03-17 22:21:15.748 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:21:15.748 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.349609375, Z-position -0.167933188193726. ----------
17-03-17 22:21:15.748 -07 000000610 INF: Cycle	62	Tile	16	Exposure Settings		A	450	G	216	T	216	C	450
17-03-17 22:21:15.748 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36508, sync = True, waitForSettling = True)
17-03-17 22:21:15.748 -07 000000610 INF: Z Motor: Moving to -0.167123 mm, started at -0.167933 mm, distance = 0.81 um
17-03-17 22:21:15.748 -07 000000610 INF: FPGA: Xmit ZDACW 36508\n [Z Motor]
17-03-17 22:21:15.748 -07 000000462 INF: FPGA: Recv ZDACW
17-03-17 22:21:15.758 -07 000000610 INF: FPGA: 'ZDACW 36508' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 22:21:15.758 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:21:15.758 -07 000000462 INF: FPGA: Recv ZDACR 36508
17-03-17 22:21:15.768 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:15.768 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:21:15.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:15.918 -07 000000551 INF: FPGA: Recv ZSGSRD 35300
17-03-17 22:21:15.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:21:15.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:15.928 -07 000000459 INF: FPGA: Recv ZSGSRD 35310
17-03-17 22:21:15.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:21:15.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:15.938 -07 000000459 INF: FPGA: Recv ZSGSRD 35301
17-03-17 22:21:15.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:15.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:15.948 -07 000000459 INF: FPGA: Recv ZSGSRD 35303
17-03-17 22:21:15.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:15.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:15.958 -07 000000459 INF: FPGA: Recv ZSGSRD 35302
17-03-17 22:21:15.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:15.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:15.968 -07 000000459 INF: FPGA: Recv ZSGSRD 35304
17-03-17 22:21:15.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:15.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:15.978 -07 000000382 INF: FPGA: Recv ZSGSRD 35302
17-03-17 22:21:15.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:15.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:15.988 -07 000000382 INF: FPGA: Recv ZSGSRD 35301
17-03-17 22:21:15.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:15.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:15.998 -07 000000459 INF: FPGA: Recv ZSGSRD 35309
17-03-17 22:21:16.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:16.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:16.018 -07 000000462 INF: FPGA: Recv ZSGSRD 35309
17-03-17 22:21:16.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:21:16.028 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:21:16.028 -07 000000462 INF: FPGA: Recv ZPIEZORD 31236
17-03-17 22:21:16.038 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:16.038 -07 000000610 INF: Z Motor: Piezo is near 46.7 V (nominally 0 to 100 V), expect near 55.7 V, since DAC is at 5.571 V. Piezo Error = -9.0 V.
17-03-17 22:21:16.038 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.1 um, Read 10 ADC samples: Avg = 35304 (-166.3 uncal um), Error = 0.9 uncal um, Median = 35302 (-166.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35300 (-166.2 uncal um), Max = 35310 (-166.3 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 22:21:16.038 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35304, posNoise = 6, negNoise = 4
17-03-17 22:21:16.038 -07 000000610 INF: Z Motor: After move to -0.167123, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:21:16.038 -07 000000610 INF: Z Motor: MoveAbsStepped took 285 ms)
17-03-17 22:21:16.038 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:21:16.038 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:21:16.038 -07 000000551 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:21:16.038 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:21:16.038 -07 000000482 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:21:16.038 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:21:16.038 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:21:16.038 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:21:16.038 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:21:16.038 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:21:16.038 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:21:16.038 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:21:16.048 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:21:16.048 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:21:16.048 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:21:16.048 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:21:16.058 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-17 22:21:16.058 -07 000000482 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 22:21:16.058 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-17 22:21:16.058 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 22:21:16.058 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 450 450 216 216 36684 150\n [Camera]
17-03-17 22:21:16.258 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:21:16.328 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 62, FrontChillerTemperature: 3.994908,
17-03-17 22:21:16.718 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 646
17-03-17 22:21:16.718 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 646
17-03-17 22:21:16.718 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:21:16.718 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:21:16.718 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 1441468064, 0x0, 391868352) start.
17-03-17 22:21:16.718 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 646
17-03-17 22:21:16.718 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 646
17-03-17 22:21:16.718 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:21:16.718 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:21:16.718 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1476890328, 0x0, 418435064) start.
17-03-17 22:21:16.908 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36684 835
17-03-17 22:21:16.968 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:21:16.968 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 61. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=992, R2=1018, Total=2010. Warn if over 250 bubbles per interval.
17-03-17 22:21:17.058 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning grn on 985
17-03-17 22:21:17.088 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 1441468064, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 22:21:17.088 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 22:21:17.088 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:21:17.098 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1476890328, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 22:21:17.098 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-17 22:21:17.098 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:21:17.098 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 22:21:17.098 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 22:21:17.098 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 22:21:17.108 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 22:21:17.268 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1201
17-03-17 22:21:17.268 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1201
17-03-17 22:21:17.268 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:21:17.268 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:21:17.268 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start.
17-03-17 22:21:17.268 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1201
17-03-17 22:21:17.268 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1201
17-03-17 22:21:17.278 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:21:17.278 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:21:17.278 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) start.
17-03-17 22:21:17.458 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP 1394
17-03-17 22:21:17.458 -07 000000569 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:21:17.458 -07 000000610 INF: FPGA: 'CAMDBLSNAP 450 450 216 216 36684 150' command took 2 ms to send, 1388 ms to get response, and 1401 ms overall
17-03-17 22:21:17.468 -07 000000610 INF: Skipping AutoFocus in Tile 17: adopting Best-Z from the cache: -0.167643
17-03-17 22:21:17.468 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.16764 mm
17-03-17 22:21:17.468 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:21:17.468 -07 000000569 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-17 22:21:17.468 -07 000000569 INF: Y Motor: Moving to 73.1926 mm, started at 72.3496 mm, delta = 0.8430 mm
17-03-17 22:21:17.468 -07 000000438 INF: Z Motor: Entering MoveAbsStepped (DAC = 36622, sync = True, waitForSettling = False)
17-03-17 22:21:17.468 -07 000000438 INF: Z Motor: Moving to -0.167645 mm, started at -0.167124 mm, distance = -0.52 um
17-03-17 22:21:17.468 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:21:17.478 -07 000000438 INF: FPGA: Xmit ZDACW 36622\n [Z Motor]
17-03-17 22:21:17.668 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 392 ms.
17-03-17 22:21:17.668 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 22:21:17.668 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:21:17.668 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) end. Duration was 392 ms.
17-03-17 22:21:17.668 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 22:21:17.668 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:21:17.668 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:21:17.668 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 22:21:17.668 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:21:17.678 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-17 22:21:17.678 -07 000000501 INF: FPGA: Recv YRDPOS 148172
17-03-17 22:21:17.678 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 22:21:17.678 -07 000000438 INF: FPGA: 'ZDACW 36622' command took 0 ms to send, 195 ms to get response, and 211 ms overall
17-03-17 22:21:17.678 -07 000000438 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:21:17.678 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 205 ms to get response, and 211 ms overall
17-03-17 22:21:17.678 -07 000000569 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:21:17.678 -07 000000569 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:21:17.678 -07 000000569 INF: Y Motor: Moving 1349 steps-27
17-03-17 22:21:17.798 -07 000000569 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:21:17.798 -07 000000501 INF: FPGA: Recv ZDACR 36622
17-03-17 22:21:17.798 -07 000000438 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 120 ms overall
17-03-17 22:21:17.798 -07 000000438 INF: Z Motor: MoveAbsStepped took 332 ms (did NOT wait for settling yet))
17-03-17 22:21:18.178 -07 000000576 INF: FPGA: Recv YMVTILE
17-03-17 22:21:18.178 -07 000000569 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 374 ms to get response, and 378 ms overall
17-03-17 22:21:18.218 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:21:18.218 -07 000000576 INF: FPGA: Recv YRDPOS 149865
17-03-17 22:21:18.228 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 22:21:18.228 -07 000000569 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:21:18.228 -07 000000569 INF: Y Motor: Position error before settling (table move) = -33 encoder counts (-0.016 mm)
17-03-17 22:21:18.228 -07 000000569 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 497 ms, distance = 0.843 mm, average velocity = 1.696 mm/sec
17-03-17 22:21:19.178 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:21:19.178 -07 000000448 INF: FPGA: Recv YRDPOS 149865
17-03-17 22:21:19.188 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:21:19.188 -07 000000569 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:21:19.208 -07 000000569 INF: Y Motor: After move to 73.192604, error = -0.016335, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:21:19.208 -07 000000569 INF: Y Motor: Position error after settling (table move) = -33 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:21:19.208 -07 000000569 INF: Y Motor: Moved to 73.1763 after 1740 ms (table move)
17-03-17 22:21:19.208 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.167645 mm (DAC = 36622)
17-03-17 22:21:19.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:19.218 -07 000000438 INF: FPGA: Recv ZSGSRD 35381
17-03-17 22:21:19.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 22:21:19.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:19.218 -07 000000448 INF: FPGA: Recv ZSGSRD 35393
17-03-17 22:21:19.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:19.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:19.238 -07 000000438 INF: FPGA: Recv ZSGSRD 35378
17-03-17 22:21:19.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 5 ms overall
17-03-17 22:21:19.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:19.238 -07 000000480 INF: FPGA: Recv ZSGSRD 35392
17-03-17 22:21:19.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:21:19.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:19.248 -07 000000438 INF: FPGA: Recv ZSGSRD 35383
17-03-17 22:21:19.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:19.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:19.258 -07 000000480 INF: FPGA: Recv ZSGSRD 35387
17-03-17 22:21:19.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:19.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:19.268 -07 000000576 INF: FPGA: Recv ZSGSRD 35385
17-03-17 22:21:19.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:19.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:19.278 -07 000000480 INF: FPGA: Recv ZSGSRD 35381
17-03-17 22:21:19.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:19.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:19.288 -07 000000448 INF: FPGA: Recv ZSGSRD 35386
17-03-17 22:21:19.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:19.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:19.298 -07 000000561 INF: FPGA: Recv ZSGSRD 35388
17-03-17 22:21:19.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:19.308 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:21:19.308 -07 000000448 INF: FPGA: Recv ZPIEZORD 31367
17-03-17 22:21:19.318 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:19.318 -07 000000610 INF: Z Motor: Piezo is near 47.0 V (nominally 0 to 100 V), expect near 55.9 V, since DAC is at 5.588 V. Piezo Error = -8.9 V.
17-03-17 22:21:19.318 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.6 um, Read 10 ADC samples: Avg = 35385 (-166.8 uncal um), Error = 0.9 uncal um, Median = 35386 (-166.8 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 35378 (-166.7 uncal um), Max = 35393 (-166.8 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 22:21:19.318 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35385, posNoise = 8, negNoise = 7
17-03-17 22:21:19.318 -07 000000610 INF: Z Motor: After move to -0.167645, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:21:19.318 -07 000000610 INF: Z Motor: Settle wait time = 1742 ms, measure time = 104 ms (allowed 150 ms), total time = 1846 ms
17-03-17 22:21:19.318 -07 000000610 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 22:21:19.368 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1898 ms
17-03-17 22:21:19.368 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:21:19.368 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.17626953125, Z-position -0.167644098647346. ----------
17-03-17 22:21:19.368 -07 000000610 INF: Cycle	62	Tile	17	Exposure Settings		A	450	G	216	T	216	C	450
17-03-17 22:21:19.368 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36445, sync = True, waitForSettling = True)
17-03-17 22:21:19.368 -07 000000610 INF: Z Motor: Moving to -0.166835 mm, started at -0.167644 mm, distance = 0.81 um
17-03-17 22:21:19.368 -07 000000610 INF: FPGA: Xmit ZDACW 36445\n [Z Motor]
17-03-17 22:21:19.368 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 22:21:19.378 -07 000000610 INF: FPGA: 'ZDACW 36445' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:21:19.378 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:21:19.378 -07 000000561 INF: FPGA: Recv ZDACR 36445
17-03-17 22:21:19.388 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:19.388 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:21:19.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:19.538 -07 000000501 INF: FPGA: Recv ZSGSRD 35260
17-03-17 22:21:19.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:21:19.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:19.548 -07 000000448 INF: FPGA: Recv ZSGSRD 35257
17-03-17 22:21:19.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:19.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:19.558 -07 000000569 INF: FPGA: Recv ZSGSRD 35264
17-03-17 22:21:19.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:19.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:19.568 -07 000000501 INF: FPGA: Recv ZSGSRD 35263
17-03-17 22:21:19.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:19.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:19.578 -07 000000561 INF: FPGA: Recv ZSGSRD 35259
17-03-17 22:21:19.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:19.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:19.588 -07 000000576 INF: FPGA: Recv ZSGSRD 35254
17-03-17 22:21:19.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:19.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:19.598 -07 000000569 INF: FPGA: Recv ZSGSRD 35263
17-03-17 22:21:19.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:19.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:19.608 -07 000000458 INF: FPGA: Recv ZSGSRD 35263
17-03-17 22:21:19.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:19.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:19.618 -07 000000480 INF: FPGA: Recv ZSGSRD 35258
17-03-17 22:21:19.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:19.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:19.628 -07 000000623 INF: FPGA: Recv ZSGSRD 35257
17-03-17 22:21:19.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:19.638 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:21:19.638 -07 000000501 INF: FPGA: Recv ZPIEZORD 31209
17-03-17 22:21:19.648 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:19.648 -07 000000610 INF: Z Motor: Piezo is near 46.7 V (nominally 0 to 100 V), expect near 55.6 V, since DAC is at 5.561 V. Piezo Error = -8.9 V.
17-03-17 22:21:19.648 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.8 um, Read 10 ADC samples: Avg = 35260 (-166.0 uncal um), Error = 0.9 uncal um, Median = 35260 (-166.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35254 (-165.9 uncal um), Max = 35264 (-166.0 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 22:21:19.648 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35260, posNoise = 4, negNoise = 6
17-03-17 22:21:19.648 -07 000000610 INF: Z Motor: After move to -0.166835, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:21:19.648 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 22:21:19.648 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:21:19.648 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:21:19.648 -07 000000623 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:21:19.648 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:21:19.648 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:21:19.648 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:21:19.648 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:21:19.648 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:21:19.648 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:21:19.648 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:21:19.648 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:21:19.648 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:21:19.658 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:21:19.658 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:21:19.658 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 22:21:19.658 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:21:19.668 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 22:21:19.668 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 22:21:19.668 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 22:21:19.668 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 23 ms.
17-03-17 22:21:19.678 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 450 450 216 216 36622 150\n [Camera]
17-03-17 22:21:19.868 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:21:20.318 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 642
17-03-17 22:21:20.318 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 642
17-03-17 22:21:20.328 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:21:20.328 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:21:20.328 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 22:21:20.328 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 642
17-03-17 22:21:20.328 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 642
17-03-17 22:21:20.328 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:21:20.328 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:21:20.328 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) start.
17-03-17 22:21:20.518 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36622 835
17-03-17 22:21:20.668 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP turning grn on 985
17-03-17 22:21:20.708 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 382 ms.
17-03-17 22:21:20.708 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 22:21:20.708 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:21:20.708 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) end. Duration was 380 ms.
17-03-17 22:21:20.708 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-17 22:21:20.708 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:21:20.708 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:21:20.708 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 22:21:20.708 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:21:20.718 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 22:21:20.878 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1201
17-03-17 22:21:20.878 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1201
17-03-17 22:21:20.878 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:21:20.878 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:21:20.888 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1476890328, 0x0, 391868352) start.
17-03-17 22:21:20.888 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1201
17-03-17 22:21:20.888 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1201
17-03-17 22:21:20.888 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:21:20.888 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:21:20.888 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-17 22:21:21.078 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP 1394
17-03-17 22:21:21.078 -07 000000623 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:21:21.078 -07 000000610 INF: FPGA: 'CAMDBLSNAP 450 450 216 216 36622 150' command took 2 ms to send, 1390 ms to get response, and 1400 ms overall
17-03-17 22:21:21.078 -07 000000610 INF: Skipping AutoFocus in Tile 18: adopting Best-Z from the cache: -0.167213
17-03-17 22:21:21.078 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.16721 mm
17-03-17 22:21:21.078 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:21:21.078 -07 000000438 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-17 22:21:21.078 -07 000000438 INF: Y Motor: Moving to 74.0226 mm, started at 73.1763 mm, delta = 0.8463 mm
17-03-17 22:21:21.078 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:21:21.078 -07 000000561 INF: Z Motor: Entering MoveAbsStepped (DAC = 36528, sync = True, waitForSettling = False)
17-03-17 22:21:21.078 -07 000000561 INF: Z Motor: Moving to -0.167214 mm, started at -0.166841 mm, distance = -0.37 um
17-03-17 22:21:21.078 -07 000000458 INF: FPGA: Recv YRDPOS 149865
17-03-17 22:21:21.088 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 22:21:21.088 -07 000000438 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:21:21.088 -07 000000438 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:21:21.088 -07 000000438 INF: Y Motor: Moving 1354 steps-33
17-03-17 22:21:21.088 -07 000000561 INF: FPGA: Xmit ZDACW 36528\n [Z Motor]
17-03-17 22:21:21.088 -07 000000486 INF: FPGA: Recv ZDACW
17-03-17 22:21:21.098 -07 000000561 INF: FPGA: 'ZDACW 36528' command took 1 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 22:21:21.098 -07 000000561 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:21:21.098 -07 000000480 INF: FPGA: Recv ZDACR 36528
17-03-17 22:21:21.108 -07 000000438 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:21:21.108 -07 000000561 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:21.108 -07 000000561 INF: Z Motor: MoveAbsStepped took 24 ms (did NOT wait for settling yet))
17-03-17 22:21:21.268 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1476890328, 0x0, 391868352) end. Duration was 382 ms.
17-03-17 22:21:21.268 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 22:21:21.268 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:21:21.268 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 380 ms.
17-03-17 22:21:21.268 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-17 22:21:21.268 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:21:21.268 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 22:21:21.268 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 22:21:21.268 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 22:21:21.278 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 22:21:21.478 -07 000000576 INF: FPGA: Recv YMVTILE
17-03-17 22:21:21.478 -07 000000438 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 22:21:21.518 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:21:21.518 -07 000000576 INF: FPGA: Recv YRDPOS 151569
17-03-17 22:21:21.528 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 22:21:21.528 -07 000000438 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:21:21.528 -07 000000438 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-17 22:21:21.528 -07 000000438 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.846 mm, average velocity = 2.132 mm/sec
17-03-17 22:21:21.688 -07 000000486 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 62, FrontChillerTemperature: 3.996267,
17-03-17 22:21:21.968 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:21:21.968 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 61. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=992, R2=1018, Total=2010. Warn if over 250 bubbles per interval.
17-03-17 22:21:22.478 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:21:22.478 -07 000000486 INF: FPGA: Recv YRDPOS 151569
17-03-17 22:21:22.488 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:21:22.488 -07 000000438 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:21:22.508 -07 000000438 INF: Y Motor: After move to 74.022606, error = -0.014305, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:21:22.508 -07 000000438 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:21:22.508 -07 000000438 INF: Y Motor: Moved to 74.0083 after 1425 ms (table move)
17-03-17 22:21:22.508 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.167214 mm (DAC = 36528)
17-03-17 22:21:22.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:22.508 -07 000000438 INF: FPGA: Recv ZSGSRD 35325
17-03-17 22:21:22.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:21:22.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:22.518 -07 000000438 INF: FPGA: Recv ZSGSRD 35320
17-03-17 22:21:22.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:22.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:22.528 -07 000000486 INF: FPGA: Recv ZSGSRD 35320
17-03-17 22:21:22.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:22.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:22.538 -07 000000561 INF: FPGA: Recv ZSGSRD 35316
17-03-17 22:21:22.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:22.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:22.548 -07 000000486 INF: FPGA: Recv ZSGSRD 35326
17-03-17 22:21:22.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:22.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:22.558 -07 000000438 INF: FPGA: Recv ZSGSRD 35320
17-03-17 22:21:22.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:22.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:22.568 -07 000000501 INF: FPGA: Recv ZSGSRD 35319
17-03-17 22:21:22.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:22.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:22.578 -07 000000486 INF: FPGA: Recv ZSGSRD 35312
17-03-17 22:21:22.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:22.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:22.588 -07 000000438 INF: FPGA: Recv ZSGSRD 35313
17-03-17 22:21:22.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:22.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:22.598 -07 000000501 INF: FPGA: Recv ZSGSRD 35323
17-03-17 22:21:22.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:22.608 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:21:22.608 -07 000000438 INF: FPGA: Recv ZPIEZORD 31278
17-03-17 22:21:22.618 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:22.618 -07 000000610 INF: Z Motor: Piezo is near 46.8 V (nominally 0 to 100 V), expect near 55.7 V, since DAC is at 5.574 V. Piezo Error = -8.9 V.
17-03-17 22:21:22.618 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.2 um, Read 10 ADC samples: Avg = 35319 (-166.4 uncal um), Error = 0.9 uncal um, Median = 35320 (-166.4 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 35312 (-166.3 uncal um), Max = 35326 (-166.4 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 22:21:22.618 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35319, posNoise = 7, negNoise = 7
17-03-17 22:21:22.618 -07 000000610 INF: Z Motor: After move to -0.167214, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:21:22.618 -07 000000610 INF: Z Motor: Settle wait time = 1427 ms, measure time = 107 ms (allowed 150 ms), total time = 1534 ms
17-03-17 22:21:22.618 -07 000000610 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 22:21:22.668 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1587 ms
17-03-17 22:21:22.668 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:21:22.668 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.00830078125, Z-position -0.16722010064599. ----------
17-03-17 22:21:22.668 -07 000000610 INF: Cycle	62	Tile	18	Exposure Settings		A	450	G	216	T	216	C	450
17-03-17 22:21:22.668 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36351, sync = True, waitForSettling = True)
17-03-17 22:21:22.668 -07 000000610 INF: Z Motor: Moving to -0.166404 mm, started at -0.167220 mm, distance = 0.82 um
17-03-17 22:21:22.668 -07 000000610 INF: FPGA: Xmit ZDACW 36351\n [Z Motor]
17-03-17 22:21:22.668 -07 000000551 INF: FPGA: Recv ZDACW
17-03-17 22:21:22.678 -07 000000610 INF: FPGA: 'ZDACW 36351' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:21:22.678 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:21:22.678 -07 000000561 INF: FPGA: Recv ZDACR 36351
17-03-17 22:21:22.688 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:22.688 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:21:22.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:22.838 -07 000000551 INF: FPGA: Recv ZSGSRD 35200
17-03-17 22:21:22.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:21:22.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:22.848 -07 000000462 INF: FPGA: Recv ZSGSRD 35192
17-03-17 22:21:22.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:22.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:22.858 -07 000000561 INF: FPGA: Recv ZSGSRD 35192
17-03-17 22:21:22.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:22.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:22.868 -07 000000551 INF: FPGA: Recv ZSGSRD 35196
17-03-17 22:21:22.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:22.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:22.878 -07 000000462 INF: FPGA: Recv ZSGSRD 35191
17-03-17 22:21:22.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:22.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:22.888 -07 000000438 INF: FPGA: Recv ZSGSRD 35194
17-03-17 22:21:22.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:22.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:22.898 -07 000000462 INF: FPGA: Recv ZSGSRD 35189
17-03-17 22:21:22.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:22.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:22.908 -07 000000438 INF: FPGA: Recv ZSGSRD 35189
17-03-17 22:21:22.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:22.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:22.918 -07 000000501 INF: FPGA: Recv ZSGSRD 35200
17-03-17 22:21:22.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:22.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:22.928 -07 000000438 INF: FPGA: Recv ZSGSRD 35189
17-03-17 22:21:22.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:22.938 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:21:22.938 -07 000000501 INF: FPGA: Recv ZPIEZORD 31108
17-03-17 22:21:22.948 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:22.948 -07 000000610 INF: Z Motor: Piezo is near 46.5 V (nominally 0 to 100 V), expect near 55.5 V, since DAC is at 5.547 V. Piezo Error = -9.0 V.
17-03-17 22:21:22.948 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.4 um, Read 10 ADC samples: Avg = 35193 (-165.5 uncal um), Error = 0.9 uncal um, Median = 35192 (-165.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35189 (-165.5 uncal um), Max = 35200 (-165.6 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 22:21:22.948 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35193, posNoise = 7, negNoise = 4
17-03-17 22:21:22.948 -07 000000610 INF: Z Motor: After move to -0.166404, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:21:22.948 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-17 22:21:22.948 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:21:22.948 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:21:22.948 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:21:22.948 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:21:22.948 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:21:22.948 -07 000000551 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:21:22.948 -07 000000486 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:21:22.948 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:21:22.948 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 3 ms.
17-03-17 22:21:22.948 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:21:22.948 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:21:22.958 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:21:22.958 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:21:22.958 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:21:22.958 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 22:21:22.958 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:21:22.968 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 22:21:22.968 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 24 ms.
17-03-17 22:21:22.968 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 22:21:22.968 -07 000000486 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 23 ms.
17-03-17 22:21:22.978 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 450 450 216 216 36528 150\n [Camera]
17-03-17 22:21:23.178 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:21:23.628 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 642
17-03-17 22:21:23.628 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 642
17-03-17 22:21:23.628 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:21:23.628 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:21:23.628 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start.
17-03-17 22:21:23.628 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 642
17-03-17 22:21:23.628 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 642
17-03-17 22:21:23.628 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:21:23.758 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:21:23.758 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-17 22:21:23.818 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36528 835
17-03-17 22:21:23.968 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning grn on 985
17-03-17 22:21:24.008 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 22:21:24.008 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 22:21:24.008 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:21:24.008 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:21:24.008 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 22:21:24.128 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 370 ms.
17-03-17 22:21:24.128 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-17 22:21:24.128 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:21:24.128 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:21:24.138 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 507 ms.
17-03-17 22:21:24.188 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1201
17-03-17 22:21:24.188 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1201
17-03-17 22:21:24.188 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:21:24.188 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:21:24.188 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 22:21:24.188 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1201
17-03-17 22:21:24.188 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1201
17-03-17 22:21:24.188 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:21:24.188 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:21:24.188 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) start.
17-03-17 22:21:24.378 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP 1394
17-03-17 22:21:24.378 -07 000000438 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:21:24.378 -07 000000610 INF: FPGA: 'CAMDBLSNAP 450 450 216 216 36528 150' command took 2 ms to send, 1392 ms to get response, and 1400 ms overall
17-03-17 22:21:24.378 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 22:21:24.378 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.00830078125, Z-Position -0.166410649916128. ------
17-03-17 22:21:24.378 -07 000000551 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:21:24.378 -07 000000501 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.17282 mm
17-03-17 22:21:24.378 -07 000000501 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:21:24.388 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:21:24.388 -07 000000551 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:21:24.388 -07 000000551 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:21:24.388 -07 000000459 INF: Z Motor: Entering MoveAbsStepped (DAC = 37752, sync = True, waitForSettling = False)
17-03-17 22:21:24.388 -07 000000459 INF: Z Motor: Moving to -0.172818 mm, started at -0.166411 mm, distance = -6.41 um
17-03-17 22:21:24.388 -07 000000576 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-17 22:21:24.388 -07 000000576 INF: Y Motor: Moving to 74.8526 mm, started at 74.0083 mm, delta = 0.8443 mm
17-03-17 22:21:24.398 -07 000000459 INF: FPGA: Xmit ZDACW 37752\n [Z Motor]
17-03-17 22:21:24.398 -07 000000623 INF: FPGA: Recv ZDACW
17-03-17 22:21:24.408 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:21:24.408 -07 000000459 INF: FPGA: 'ZDACW 37752' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 22:21:24.408 -07 000000482 INF: FPGA: Recv YRDPOS 151569
17-03-17 22:21:24.418 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-17 22:21:24.418 -07 000000576 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:21:24.418 -07 000000576 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:21:24.418 -07 000000576 INF: Y Motor: Moving 1351 steps-29
17-03-17 22:21:24.418 -07 000000459 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:21:24.418 -07 000000462 INF: FPGA: Recv ZDACR 37752
17-03-17 22:21:24.428 -07 000000459 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:21:24.428 -07 000000459 INF: Z Motor: MoveAbsStepped took 34 ms (did NOT wait for settling yet))
17-03-17 22:21:24.428 -07 000000576 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:21:24.568 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 385 ms.
17-03-17 22:21:24.568 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 22:21:24.568 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:21:24.568 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) end. Duration was 384 ms.
17-03-17 22:21:24.568 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-17 22:21:24.568 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:21:24.578 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:21:24.578 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 22:21:24.578 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:21:24.588 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 22:21:24.588 -07 000000482 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:21:24.588 -07 000000551 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 197 ms to get response, and 203 ms overall
17-03-17 22:21:24.798 -07 000000486 INF: FPGA: Recv YMVTILE
17-03-17 22:21:24.798 -07 000000576 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 388 ms overall
17-03-17 22:21:24.828 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:21:24.828 -07 000000458 INF: FPGA: Recv YRDPOS 153256
17-03-17 22:21:24.838 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:21:24.838 -07 000000576 INF: Y Motor: Encoder = 153256 = motor step 119731.3 = 74.8320 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:21:24.838 -07 000000576 INF: Y Motor: Position error before settling (table move) = -42 encoder counts (-0.021 mm)
17-03-17 22:21:24.838 -07 000000576 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.844 mm, average velocity = 2.176 mm/sec
17-03-17 22:21:25.788 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:21:25.788 -07 000000382 INF: FPGA: Recv YRDPOS 153257
17-03-17 22:21:25.798 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:21:25.798 -07 000000576 INF: Y Motor: Encoder = 153257 = motor step 119732.0 = 74.8325 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:21:25.808 -07 000000576 INF: Y Motor: After move to 74.852608, error = -0.020088, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:21:25.808 -07 000000576 INF: Y Motor: Position error after settling (table move) = -41 encoder counts (-0.020 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 22:21:25.808 -07 000000576 INF: Y Motor: Moved to 74.8325 after 1422 ms (table move)
17-03-17 22:21:25.818 -07 000000501 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172818 mm (DAC = 37752)
17-03-17 22:21:25.818 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:25.818 -07 000000618 INF: FPGA: Recv ZSGSRD 36200
17-03-17 22:21:25.828 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:21:25.828 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:25.828 -07 000000448 INF: FPGA: Recv ZSGSRD 36187
17-03-17 22:21:25.838 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:25.838 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:25.838 -07 000000482 INF: FPGA: Recv ZSGSRD 36190
17-03-17 22:21:25.848 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:25.848 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:25.848 -07 000000462 INF: FPGA: Recv ZSGSRD 36187
17-03-17 22:21:25.858 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:25.858 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:25.858 -07 000000459 INF: FPGA: Recv ZSGSRD 36195
17-03-17 22:21:25.868 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:25.868 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:25.868 -07 000000382 INF: FPGA: Recv ZSGSRD 36204
17-03-17 22:21:25.878 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:25.878 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:25.878 -07 000000438 INF: FPGA: Recv ZSGSRD 36194
17-03-17 22:21:25.888 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:25.888 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:25.888 -07 000000623 INF: FPGA: Recv ZSGSRD 36195
17-03-17 22:21:25.898 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:25.898 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:25.898 -07 000000424 INF: FPGA: Recv ZSGSRD 36189
17-03-17 22:21:25.908 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:25.908 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:25.908 -07 000000382 INF: FPGA: Recv ZSGSRD 36188
17-03-17 22:21:25.918 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:25.918 -07 000000501 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:21:25.918 -07 000000424 INF: FPGA: Recv ZPIEZORD 32427
17-03-17 22:21:25.928 -07 000000501 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:25.928 -07 000000501 INF: Z Motor: Piezo is near 49.3 V (nominally 0 to 100 V), expect near 57.6 V, since DAC is at 5.761 V. Piezo Error = -8.3 V.
17-03-17 22:21:25.928 -07 000000501 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.8 um, Read 10 ADC samples: Avg = 36193 (-172.0 uncal um), Error = 0.9 uncal um, Median = 36192 (-171.9 uncal um), StdDev = 6 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 36187 (-171.9 uncal um), Max = 36204 (-172.0 uncal um), Pos Noise = 11 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 22:21:25.928 -07 000000501 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36193, posNoise = 11, negNoise = 6
17-03-17 22:21:25.928 -07 000000501 INF: Z Motor: After move to -0.172818, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:21:25.928 -07 000000501 INF: Z Motor: Settle wait time = 1425 ms, measure time = 110 ms (allowed 150 ms), total time = 1535 ms
17-03-17 22:21:25.928 -07 000000501 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-17 22:21:25.968 -07 000000501 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1580 ms
17-03-17 22:21:25.968 -07 000000501 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:21:25.968 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:21:25.968 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:21:25.968 -07 000000482 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:21:25.968 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:21:25.968 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:21:25.968 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:21:25.978 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:21:25.978 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:21:25.978 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:21:25.978 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:21:25.988 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 22:21:25.988 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 22:21:25.988 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:21:26.038 -07 000000424 INF: FPGA: Recv @CAMSNAP turning led on 41
17-03-17 22:21:26.238 -07 000000424 INF: FPGA: Recv @CAMSNAP img rdy 241
17-03-17 22:21:26.238 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 241
17-03-17 22:21:26.238 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:21:26.238 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 22:21:26.278 -07 000000501 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:21:26.278 -07 000000482 INF: FPGA: Recv CAMSNAP
17-03-17 22:21:26.278 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 284 ms overall
17-03-17 22:21:26.368 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 22:21:26.368 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:21:26.368 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:21:26.368 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 22:21:26.378 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:21:26.378 -07 000000482 INF: Autofocus start
17-03-17 22:21:26.378 -07 000000482 INF: MeasureProfile start
17-03-17 22:21:26.378 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:21:26.388 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:21:26.388 -07 000000424 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:21:26.388 -07 000000482 INF: MeasureProfile done
17-03-17 22:21:26.388 -07 000000482 INF: X=48  Z correction [um]=0.1739867
17-03-17 22:21:26.388 -07 000000482 INF: Autofocus finished
17-03-17 22:21:26.588 -07 000000618 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:21:26.588 -07 000000424 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:21:26.588 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83251953125, Z-position -0.172834862057889. ----------
17-03-17 22:21:26.588 -07 000000610 INF: Cycle	62	Tile	19	Exposure Settings		A	450	G	216	T	216	C	450
17-03-17 22:21:26.598 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36302, sync = True, waitForSettling = True)
17-03-17 22:21:26.598 -07 000000610 INF: Z Motor: Moving to -0.166180 mm, started at -0.172835 mm, distance = 6.65 um
17-03-17 22:21:26.598 -07 000000610 INF: FPGA: Xmit ZDACW 36302\n [Z Motor]
17-03-17 22:21:26.598 -07 000000424 INF: FPGA: Recv ZDACW
17-03-17 22:21:26.608 -07 000000610 INF: FPGA: 'ZDACW 36302' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:21:26.608 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:21:26.608 -07 000000501 INF: FPGA: Recv ZDACR 36302
17-03-17 22:21:26.618 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:26.618 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:21:26.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:26.768 -07 000000501 INF: FPGA: Recv ZSGSRD 35159
17-03-17 22:21:26.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:21:26.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:26.778 -07 000000501 INF: FPGA: Recv ZSGSRD 35156
17-03-17 22:21:26.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:26.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:26.788 -07 000000424 INF: FPGA: Recv ZSGSRD 35163
17-03-17 22:21:26.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:26.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:26.798 -07 000000482 INF: FPGA: Recv ZSGSRD 35153
17-03-17 22:21:26.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:26.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:26.808 -07 000000501 INF: FPGA: Recv ZSGSRD 35162
17-03-17 22:21:26.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:26.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:26.818 -07 000000424 INF: FPGA: Recv ZSGSRD 35158
17-03-17 22:21:26.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:26.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:26.828 -07 000000482 INF: FPGA: Recv ZSGSRD 35156
17-03-17 22:21:26.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:26.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:26.838 -07 000000424 INF: FPGA: Recv ZSGSRD 35158
17-03-17 22:21:26.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:21:26.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:26.848 -07 000000482 INF: FPGA: Recv ZSGSRD 35156
17-03-17 22:21:26.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:26.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:26.858 -07 000000618 INF: FPGA: Recv ZSGSRD 35153
17-03-17 22:21:26.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:26.868 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:21:26.868 -07 000000501 INF: FPGA: Recv ZPIEZORD 31070
17-03-17 22:21:26.878 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:26.878 -07 000000610 INF: Z Motor: Piezo is near 46.4 V (nominally 0 to 100 V), expect near 55.4 V, since DAC is at 5.539 V. Piezo Error = -9.0 V.
17-03-17 22:21:26.878 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.2 um, Read 10 ADC samples: Avg = 35157 (-165.3 uncal um), Error = 0.9 uncal um, Median = 35157 (-165.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35153 (-165.3 uncal um), Max = 35163 (-165.4 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 22:21:26.878 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35157, posNoise = 6, negNoise = 4
17-03-17 22:21:26.878 -07 000000610 INF: Z Motor: After move to -0.166180, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:21:26.878 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 22:21:26.878 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:21:26.878 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:21:26.878 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:21:26.878 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:21:26.878 -07 000000482 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:21:26.878 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:21:26.878 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:21:26.878 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:21:26.878 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:21:26.878 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:21:26.878 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:21:26.878 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:21:26.888 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:21:26.888 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:21:26.888 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:21:26.888 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:21:26.898 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 22:21:26.898 -07 000000482 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 22:21:26.898 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 22:21:26.898 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 22:21:26.908 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 450 450 216 216 36479 150\n [Camera]
17-03-17 22:21:26.968 -07 000000482 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:21:26.968 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 61. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=992, R2=1018, Total=2010. Warn if over 250 bubbles per interval.
17-03-17 22:21:27.048 -07 000000486 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 62, FrontChillerTemperature: 4.005817,
17-03-17 22:21:27.108 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:21:27.558 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 642
17-03-17 22:21:27.558 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 642
17-03-17 22:21:27.558 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:21:27.558 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:21:27.558 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 1476890328, 0x0, 391868352) start.
17-03-17 22:21:27.558 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 642
17-03-17 22:21:27.558 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 642
17-03-17 22:21:27.558 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:21:27.558 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:21:27.558 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) start.
17-03-17 22:21:27.748 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36479 835
17-03-17 22:21:27.898 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning grn on 985
17-03-17 22:21:27.938 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 1476890328, 0x0, 391868352) end. Duration was 382 ms.
17-03-17 22:21:27.938 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 22:21:27.938 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:21:27.938 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) end. Duration was 380 ms.
17-03-17 22:21:27.938 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-17 22:21:27.938 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:21:27.948 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:21:27.948 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 22:21:27.948 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:21:27.948 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 22:21:28.118 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1201
17-03-17 22:21:28.118 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1201
17-03-17 22:21:28.118 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:21:28.118 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1201
17-03-17 22:21:28.118 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1201
17-03-17 22:21:28.118 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:21:28.118 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 22:21:28.118 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:21:28.118 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:21:28.118 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 22:21:28.308 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP 1393
17-03-17 22:21:28.308 -07 000000482 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:21:28.308 -07 000000610 INF: FPGA: 'CAMDBLSNAP 450 450 216 216 36479 150' command took 2 ms to send, 1394 ms to get response, and 1403 ms overall
17-03-17 22:21:28.508 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 385 ms.
17-03-17 22:21:28.508 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 22:21:28.508 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:21:28.508 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 387 ms.
17-03-17 22:21:28.508 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 22:21:28.508 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:21:28.508 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:21:28.508 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:21:28.508 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 22:21:28.508 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-17 22:21:28.518 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 22:21:28.558 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 42 ms.
17-03-17 22:21:28.558 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-17 22:21:28.598 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 42 ms.
17-03-17 22:21:28.598 -07 000000610 INF: Move compensator for Bottom-surface imaging.
17-03-17 22:21:28.598 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-17 22:21:28.598 -07 000000501 INF: FPGA: Recv EMCUR 
17-03-17 22:21:28.608 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 22:21:28.608 -07 000000610 INF: FPGA: Xmit EMIN 20 40\n [Compensator]
17-03-17 22:21:29.108 -07 000000424 INF: FPGA: Recv EMIN
17-03-17 22:21:29.108 -07 000000610 INF: FPGA: 'EMIN 20 40' command took 0 ms to send, 493 ms to get response, and 502 ms overall
17-03-17 22:21:29.108 -07 000000610 INF: FPGA: Xmit EMCUR 60\n [Compensator]
17-03-17 22:21:29.108 -07 000000462 INF: FPGA: Recv EMCUR 
17-03-17 22:21:29.118 -07 000000610 INF: FPGA: 'EMCUR 60' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:21:29.118 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 22:21:29.118 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 74.83251953125, Z-Position -0.166179378279025. ------
17-03-17 22:21:29.118 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:21:29.118 -07 000000576 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.14030 mm
17-03-17 22:21:29.118 -07 000000576 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:21:29.118 -07 000000459 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-17 22:21:29.118 -07 000000459 INF: Y Motor: Moving to 59.9126 mm, started at 74.8325 mm, delta = -14.9199 mm
17-03-17 22:21:29.118 -07 000000480 INF: Z Motor: Entering MoveAbsStepped (DAC = 30648, sync = True, waitForSettling = False)
17-03-17 22:21:29.118 -07 000000480 INF: Z Motor: Moving to -0.140298 mm, started at -0.166179 mm, distance = 25.88 um
17-03-17 22:21:29.118 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:21:29.128 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:21:29.128 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:21:29.128 -07 000000486 INF: FPGA: Recv YRDPOS 153258
17-03-17 22:21:29.138 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 22:21:29.138 -07 000000459 INF: Y Motor: Encoder = 153258 = motor step 119732.8 = 74.8330 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:21:29.138 -07 000000480 INF: FPGA: Xmit ZDACW 30648\n [Z Motor]
17-03-17 22:21:29.138 -07 000000459 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = -14.9400 mm (-23904.0 steps). UsingTableMove = False
17-03-17 22:21:29.138 -07 000000459 INF: Y Motor: Moving to 122701 encoder counts
17-03-17 22:21:29.138 -07 000000486 INF: FPGA: Recv ZDACW
17-03-17 22:21:29.148 -07 000000480 INF: FPGA: 'ZDACW 30648' command took 0 ms to send, 0 ms to get response, and 20 ms overall
17-03-17 22:21:29.148 -07 000000424 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:21:29.158 -07 000000459 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-17 22:21:29.168 -07 000000480 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:21:29.168 -07 000000501 INF: FPGA: Recv ZDACR 30648
17-03-17 22:21:29.178 -07 000000480 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:21:29.178 -07 000000480 INF: Z Motor: MoveAbsStepped took 51 ms (did NOT wait for settling yet))
17-03-17 22:21:29.348 -07 000000569 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:21:29.348 -07 000000424 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-17 22:21:30.778 -07 000000618 INF: FPGA: Recv YMVTO 122703 23903
17-03-17 22:21:30.778 -07 000000459 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1618 ms to get response, and 1645 ms overall
17-03-17 22:21:30.778 -07 000000459 INF: Y Motor: Position error before settling = 2 encoder counts (0.001 mm)
17-03-17 22:21:30.778 -07 000000459 INF: Y Motor: To move from 74.833 to 59.913 (-14.920 mm) should take 23873 steps, but required 23903 steps (14.939 mm). Slippage = 0.019 mm (0.00%).
17-03-17 22:21:30.778 -07 000000459 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1645 ms, distance = 14.920 mm, average velocity = 9.070 mm/sec
17-03-17 22:21:31.968 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:21:31.968 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 61. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=992, R2=1018, Total=2010. Warn if over 250 bubbles per interval.
17-03-17 22:21:32.408 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 62, FrontChillerTemperature: 4.003063,
17-03-17 22:21:33.628 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:21:33.628 -07 000000486 INF: FPGA: Recv YRDPOS 122700
17-03-17 22:21:33.638 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:33.638 -07 000000459 INF: Y Motor: Encoder = 122700 = motor step 95859.4 = 59.9121 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:21:33.668 -07 000000459 INF: Y Motor: After move to 59.912609, error = -0.000500, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:21:33.668 -07 000000459 INF: Y Motor: Position error after settling = -1 encoder counts (0.000 mm), Delta during settling = -3 counts (-0.001 mm)
17-03-17 22:21:33.668 -07 000000459 INF: Y Motor: Moved to 59.9121 after 4544 ms
17-03-17 22:21:33.668 -07 000000576 INF: Z Motor: EndOfMoveAbsStepped: target = -0.140298 mm (DAC = 30648)
17-03-17 22:21:33.668 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:33.668 -07 000000459 INF: FPGA: Recv ZSGSRD 31135
17-03-17 22:21:33.678 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:21:33.678 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:33.678 -07 000000486 INF: FPGA: Recv ZSGSRD 31130
17-03-17 22:21:33.688 -07 000000576 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:33.688 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:33.688 -07 000000459 INF: FPGA: Recv ZSGSRD 31121
17-03-17 22:21:33.698 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:33.698 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:33.698 -07 000000486 INF: FPGA: Recv ZSGSRD 31129
17-03-17 22:21:33.708 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:33.708 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:33.708 -07 000000459 INF: FPGA: Recv ZSGSRD 31125
17-03-17 22:21:33.718 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:33.718 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:33.718 -07 000000486 INF: FPGA: Recv ZSGSRD 31135
17-03-17 22:21:33.728 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:33.728 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:33.728 -07 000000459 INF: FPGA: Recv ZSGSRD 31132
17-03-17 22:21:33.738 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:33.738 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:33.738 -07 000000486 INF: FPGA: Recv ZSGSRD 31126
17-03-17 22:21:33.748 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:33.748 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:33.748 -07 000000459 INF: FPGA: Recv ZSGSRD 31134
17-03-17 22:21:33.758 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:33.758 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:33.758 -07 000000459 INF: FPGA: Recv ZSGSRD 31129
17-03-17 22:21:33.768 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:33.768 -07 000000576 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:21:33.768 -07 000000486 INF: FPGA: Recv ZPIEZORD 26822
17-03-17 22:21:33.778 -07 000000576 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:33.778 -07 000000576 INF: Z Motor: Piezo is near 37.3 V (nominally 0 to 100 V), expect near 46.8 V, since DAC is at 4.677 V. Piezo Error = -9.5 V.
17-03-17 22:21:33.778 -07 000000576 INF: Z Motor: ReadAdcAverage: Commanded Z = -140.3 um, Read 10 ADC samples: Avg = 31130 (-139.5 uncal um), Error = 0.8 uncal um, Median = 31130 (-139.5 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 31121 (-139.4 uncal um), Max = 31135 (-139.5 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 22:21:33.778 -07 000000576 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31130, posNoise = 5, negNoise = 9
17-03-17 22:21:33.778 -07 000000576 INF: Z Motor: After move to -0.140298, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:21:33.778 -07 000000576 INF: Z Motor: Settle wait time = 4547 ms, measure time = 104 ms (allowed 150 ms), total time = 4651 ms
17-03-17 22:21:33.778 -07 000000576 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 22:21:33.828 -07 000000576 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4703 ms
17-03-17 22:21:33.828 -07 000000576 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:21:33.828 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:21:33.828 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:21:33.828 -07 000000486 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:21:33.828 -07 000000459 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:21:33.828 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:21:33.828 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:21:33.828 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 22:21:33.828 -07 000000576 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-17 22:21:33.848 -07 000000576 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 20 ms.
17-03-17 22:21:33.848 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:21:33.858 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:21:33.858 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:21:33.858 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 22:21:33.858 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 32 ms.
17-03-17 22:21:33.868 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:21:33.908 -07 000000486 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:21:34.108 -07 000000486 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:21:34.108 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:21:34.108 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:21:34.108 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) start.
17-03-17 22:21:34.148 -07 000000486 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:21:34.148 -07 000000576 INF: FPGA: Recv CAMSNAP
17-03-17 22:21:34.148 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 275 ms to get response, and 285 ms overall
17-03-17 22:21:34.228 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 22:21:34.228 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:21:34.228 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 22:21:34.228 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 22:21:34.248 -07 000000458 INF: Image SNR check: start
17-03-17 22:21:34.248 -07 000000623 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:21:34.248 -07 000000459 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:21:34.258 -07 000000623 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 22:21:34.258 -07 000000623 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:21:34.268 -07 000000458 INF: Image SNR check: pass  [peak (Max-Min)=56.49]
17-03-17 22:21:34.268 -07 000000458 INF: Autofocus start
17-03-17 22:21:34.268 -07 000000458 INF: MeasureProfile start
17-03-17 22:21:34.278 -07 000000458 INF: MeasureProfile done
17-03-17 22:21:34.278 -07 000000458 INF: X=10  Z correction [um]=0.02415557
17-03-17 22:21:34.278 -07 000000458 INF: Autofocus finished
17-03-17 22:21:34.458 -07 000000551 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:21:34.458 -07 000000623 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:21:34.458 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.912109375, Z-position -0.140309075984154. ----------
17-03-17 22:21:34.468 -07 000000610 INF: Cycle	62	Tile	1	Exposure Settings		A	450	G	216	T	216	C	450
17-03-17 22:21:34.468 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 29165, sync = True, waitForSettling = True)
17-03-17 22:21:34.468 -07 000000610 INF: Z Motor: Moving to -0.133509 mm, started at -0.140309 mm, distance = 6.80 um
17-03-17 22:21:34.468 -07 000000610 INF: FPGA: Xmit ZDACW 29165\n [Z Motor]
17-03-17 22:21:34.468 -07 000000576 INF: FPGA: Recv ZDACW
17-03-17 22:21:34.478 -07 000000610 INF: FPGA: 'ZDACW 29165' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:21:34.478 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:21:34.478 -07 000000458 INF: FPGA: Recv ZDACR 29165
17-03-17 22:21:34.488 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:34.488 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:21:34.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:34.638 -07 000000551 INF: FPGA: Recv ZSGSRD 30067
17-03-17 22:21:34.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:21:34.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:34.648 -07 000000623 INF: FPGA: Recv ZSGSRD 30068
17-03-17 22:21:34.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:34.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:34.658 -07 000000576 INF: FPGA: Recv ZSGSRD 30069
17-03-17 22:21:34.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:34.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:34.668 -07 000000486 INF: FPGA: Recv ZSGSRD 30071
17-03-17 22:21:34.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:34.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:34.678 -07 000000576 INF: FPGA: Recv ZSGSRD 30071
17-03-17 22:21:34.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:34.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:34.688 -07 000000448 INF: FPGA: Recv ZSGSRD 30077
17-03-17 22:21:34.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:34.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:34.698 -07 000000382 INF: FPGA: Recv ZSGSRD 30069
17-03-17 22:21:34.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:34.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:34.708 -07 000000448 INF: FPGA: Recv ZSGSRD 30070
17-03-17 22:21:34.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:34.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:34.718 -07 000000382 INF: FPGA: Recv ZSGSRD 30072
17-03-17 22:21:34.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:34.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:34.728 -07 000000458 INF: FPGA: Recv ZSGSRD 30072
17-03-17 22:21:34.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:34.738 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:21:34.738 -07 000000576 INF: FPGA: Recv ZPIEZORD 25639
17-03-17 22:21:34.748 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:34.748 -07 000000610 INF: Z Motor: Piezo is near 34.8 V (nominally 0 to 100 V), expect near 44.5 V, since DAC is at 4.450 V. Piezo Error = -9.7 V.
17-03-17 22:21:34.748 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.5 um, Read 10 ADC samples: Avg = 30071 (-132.7 uncal um), Error = 0.8 uncal um, Median = 30070 (-132.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 30067 (-132.7 uncal um), Max = 30077 (-132.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 22:21:34.748 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30071, posNoise = 6, negNoise = 4
17-03-17 22:21:34.748 -07 000000610 INF: Z Motor: After move to -0.133509, error = 0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:21:34.748 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-17 22:21:34.748 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:21:34.748 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:21:34.748 -07 000000486 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:21:34.748 -07 000000448 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:21:34.748 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:21:34.748 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:21:34.748 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:21:34.748 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:21:34.748 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:21:34.748 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 22:21:34.748 -07 000000576 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-17 22:21:34.748 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:21:34.758 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:21:34.758 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:21:34.768 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 22:21:34.768 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 22:21:34.768 -07 000000576 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 20 ms.
17-03-17 22:21:34.768 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:21:34.778 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 22:21:34.778 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:21:34.788 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 22:21:34.788 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 34 ms.
17-03-17 22:21:34.788 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 450 450 216 216 29342 150\n [Camera]
17-03-17 22:21:34.988 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:21:35.438 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 645
17-03-17 22:21:35.438 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 645
17-03-17 22:21:35.438 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:21:35.438 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:21:35.438 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-17 22:21:35.448 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 645
17-03-17 22:21:35.448 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 645
17-03-17 22:21:35.448 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:21:35.568 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:21:35.568 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 22:21:35.628 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29342 835
17-03-17 22:21:35.778 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP turning grn on 985
17-03-17 22:21:35.838 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 397 ms.
17-03-17 22:21:35.838 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 22:21:35.838 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:21:35.838 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:21:35.838 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 22:21:35.968 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 395 ms.
17-03-17 22:21:35.968 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 22:21:35.968 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:21:35.968 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 22:21:35.978 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 531 ms.
17-03-17 22:21:35.998 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1201
17-03-17 22:21:35.998 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1201
17-03-17 22:21:35.998 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:21:35.998 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1201
17-03-17 22:21:35.998 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1201
17-03-17 22:21:35.998 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:21:36.008 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:21:36.008 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 22:21:36.008 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:21:36.008 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 22:21:36.188 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP 1394
17-03-17 22:21:36.188 -07 000000561 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:21:36.188 -07 000000610 INF: FPGA: 'CAMDBLSNAP 450 450 216 216 29342 150' command took 2 ms to send, 1395 ms to get response, and 1400 ms overall
17-03-17 22:21:36.188 -07 000000610 INF: Skipping AutoFocus in Tile 2: adopting Best-Z from the cache: -0.133938
17-03-17 22:21:36.188 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.13394 mm
17-03-17 22:21:36.188 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:21:36.198 -07 000000459 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-17 22:21:36.198 -07 000000459 INF: Y Motor: Moving to 60.7426 mm, started at 59.9121 mm, delta = 0.8305 mm
17-03-17 22:21:36.198 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:21:36.198 -07 000000458 INF: Z Motor: Entering MoveAbsStepped (DAC = 29259, sync = True, waitForSettling = False)
17-03-17 22:21:36.198 -07 000000458 INF: Z Motor: Moving to -0.133939 mm, started at -0.133506 mm, distance = -0.43 um
17-03-17 22:21:36.198 -07 000000623 INF: FPGA: Recv YRDPOS 122700
17-03-17 22:21:36.208 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:36.208 -07 000000459 INF: Y Motor: Encoder = 122700 = motor step 95859.4 = 59.9121 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:21:36.208 -07 000000459 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:21:36.208 -07 000000458 INF: FPGA: Xmit ZDACW 29259\n [Z Motor]
17-03-17 22:21:36.208 -07 000000459 INF: Y Motor: Moving 1329 steps2
17-03-17 22:21:36.208 -07 000000486 INF: FPGA: Recv ZDACW
17-03-17 22:21:36.218 -07 000000458 INF: FPGA: 'ZDACW 29259' command took 3 ms to send, 0 ms to get response, and 18 ms overall
17-03-17 22:21:36.218 -07 000000458 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:21:36.218 -07 000000382 INF: FPGA: Recv ZDACR 29259
17-03-17 22:21:36.228 -07 000000459 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:21:36.228 -07 000000458 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:36.228 -07 000000458 INF: Z Motor: MoveAbsStepped took 29 ms (did NOT wait for settling yet))
17-03-17 22:21:36.408 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 400 ms.
17-03-17 22:21:36.408 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 22:21:36.408 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:21:36.408 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 399 ms.
17-03-17 22:21:36.408 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 22:21:36.408 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:21:36.418 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:21:36.418 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 416 ms.
17-03-17 22:21:36.418 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:21:36.418 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 421 ms.
17-03-17 22:21:36.598 -07 000000382 INF: FPGA: Recv YMVTILE
17-03-17 22:21:36.598 -07 000000459 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-17 22:21:36.628 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:21:36.638 -07 000000382 INF: FPGA: Recv YRDPOS 124382
17-03-17 22:21:36.648 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:21:36.648 -07 000000459 INF: Y Motor: Encoder = 124382 = motor step 97173.4 = 60.7334 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:21:36.648 -07 000000459 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-17 22:21:36.648 -07 000000459 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.830 mm, average velocity = 2.108 mm/sec
17-03-17 22:21:36.968 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:21:36.968 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 61. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=992, R2=1018, Total=2010. Warn if over 250 bubbles per interval.
17-03-17 22:21:37.598 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:21:37.598 -07 000000551 INF: FPGA: Recv YRDPOS 124383
17-03-17 22:21:37.608 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:21:37.608 -07 000000459 INF: Y Motor: Encoder = 124383 = motor step 97174.2 = 60.7339 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:21:37.628 -07 000000459 INF: Y Motor: After move to 60.742607, error = -0.008720, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:21:37.628 -07 000000459 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 22:21:37.628 -07 000000459 INF: Y Motor: Moved to 60.7339 after 1434 ms (table move)
17-03-17 22:21:37.628 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.133939 mm (DAC = 29259)
17-03-17 22:21:37.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:37.638 -07 000000382 INF: FPGA: Recv ZSGSRD 30141
17-03-17 22:21:37.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 22:21:37.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:37.638 -07 000000382 INF: FPGA: Recv ZSGSRD 30139
17-03-17 22:21:37.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:37.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:37.648 -07 000000551 INF: FPGA: Recv ZSGSRD 30144
17-03-17 22:21:37.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:37.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:37.658 -07 000000382 INF: FPGA: Recv ZSGSRD 30146
17-03-17 22:21:37.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:37.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:37.668 -07 000000623 INF: FPGA: Recv ZSGSRD 30147
17-03-17 22:21:37.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:37.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:37.678 -07 000000623 INF: FPGA: Recv ZSGSRD 30141
17-03-17 22:21:37.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:37.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:37.688 -07 000000458 INF: FPGA: Recv ZSGSRD 30134
17-03-17 22:21:37.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:37.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:37.698 -07 000000458 INF: FPGA: Recv ZSGSRD 30141
17-03-17 22:21:37.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:37.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:37.708 -07 000000623 INF: FPGA: Recv ZSGSRD 30140
17-03-17 22:21:37.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:37.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:37.718 -07 000000623 INF: FPGA: Recv ZSGSRD 30139
17-03-17 22:21:37.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:37.728 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:21:37.728 -07 000000458 INF: FPGA: Recv ZPIEZORD 25830
17-03-17 22:21:37.738 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:37.738 -07 000000610 INF: Z Motor: Piezo is near 35.2 V (nominally 0 to 100 V), expect near 44.6 V, since DAC is at 4.465 V. Piezo Error = -9.5 V.
17-03-17 22:21:37.738 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.9 um, Read 10 ADC samples: Avg = 30141 (-133.2 uncal um), Error = 0.8 uncal um, Median = 30141 (-133.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30134 (-133.1 uncal um), Max = 30147 (-133.2 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 22:21:37.738 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30141, posNoise = 6, negNoise = 7
17-03-17 22:21:37.738 -07 000000610 INF: Z Motor: After move to -0.133939, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:21:37.738 -07 000000610 INF: Z Motor: Settle wait time = 1436 ms, measure time = 103 ms (allowed 150 ms), total time = 1539 ms
17-03-17 22:21:37.738 -07 000000610 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 22:21:37.768 -07 000000458 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 62, FrontChillerTemperature: 4.005817,
17-03-17 22:21:37.788 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1592 ms
17-03-17 22:21:37.788 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:21:37.788 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.73388671875, Z-position -0.133955530175952. ----------
17-03-17 22:21:37.788 -07 000000610 INF: Cycle	62	Tile	2	Exposure Settings		A	450	G	216	T	216	C	450
17-03-17 22:21:37.788 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 29082, sync = True, waitForSettling = True)
17-03-17 22:21:37.788 -07 000000610 INF: Z Motor: Moving to -0.133129 mm, started at -0.133956 mm, distance = 0.83 um
17-03-17 22:21:37.808 -07 000000610 INF: FPGA: Xmit ZDACW 29082\n [Z Motor]
17-03-17 22:21:37.808 -07 000000623 INF: FPGA: Recv ZDACW
17-03-17 22:21:37.818 -07 000000610 INF: FPGA: 'ZDACW 29082' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-17 22:21:37.818 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:21:37.818 -07 000000623 INF: FPGA: Recv ZDACR 29082
17-03-17 22:21:37.828 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:37.828 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:21:37.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:37.978 -07 000000458 INF: FPGA: Recv ZSGSRD 30017
17-03-17 22:21:37.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:21:37.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:37.988 -07 000000623 INF: FPGA: Recv ZSGSRD 30014
17-03-17 22:21:37.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:37.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:37.998 -07 000000458 INF: FPGA: Recv ZSGSRD 30010
17-03-17 22:21:38.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:38.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:38.008 -07 000000458 INF: FPGA: Recv ZSGSRD 30008
17-03-17 22:21:38.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:38.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:38.018 -07 000000623 INF: FPGA: Recv ZSGSRD 30011
17-03-17 22:21:38.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:38.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:38.028 -07 000000458 INF: FPGA: Recv ZSGSRD 30014
17-03-17 22:21:38.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:38.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:38.038 -07 000000623 INF: FPGA: Recv ZSGSRD 30016
17-03-17 22:21:38.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:38.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:38.048 -07 000000623 INF: FPGA: Recv ZSGSRD 30016
17-03-17 22:21:38.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:38.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:38.058 -07 000000458 INF: FPGA: Recv ZSGSRD 30009
17-03-17 22:21:38.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:38.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:38.068 -07 000000623 INF: FPGA: Recv ZSGSRD 30014
17-03-17 22:21:38.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:38.078 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:21:38.078 -07 000000458 INF: FPGA: Recv ZPIEZORD 25641
17-03-17 22:21:38.088 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:38.088 -07 000000610 INF: Z Motor: Piezo is near 34.8 V (nominally 0 to 100 V), expect near 44.4 V, since DAC is at 4.438 V. Piezo Error = -9.6 V.
17-03-17 22:21:38.088 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.1 um, Read 10 ADC samples: Avg = 30013 (-132.3 uncal um), Error = 0.8 uncal um, Median = 30014 (-132.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 30008 (-132.3 uncal um), Max = 30017 (-132.4 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 22:21:38.088 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30013, posNoise = 4, negNoise = 5
17-03-17 22:21:38.088 -07 000000610 INF: Z Motor: After move to -0.133129, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:21:38.088 -07 000000610 INF: Z Motor: MoveAbsStepped took 296 ms)
17-03-17 22:21:38.088 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:21:38.088 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:21:38.088 -07 000000458 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:21:38.088 -07 000000623 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:21:38.088 -07 000000458 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:21:38.088 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:21:38.088 -07 000000623 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:21:38.088 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:21:38.088 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:21:38.088 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:21:38.088 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:21:38.088 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:21:38.098 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:21:38.098 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:21:38.098 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:21:38.098 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:21:38.108 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 22:21:38.108 -07 000000458 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 22:21:38.108 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 22:21:38.108 -07 000000623 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 22:21:38.108 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 450 450 216 216 29259 150\n [Camera]
17-03-17 22:21:38.308 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:21:38.758 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 642
17-03-17 22:21:38.758 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 642
17-03-17 22:21:38.768 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:21:38.768 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:21:38.768 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 1441468064, 0x0, 391868352) start.
17-03-17 22:21:38.768 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 642
17-03-17 22:21:38.768 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 642
17-03-17 22:21:38.768 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:21:38.888 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:21:38.888 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 22:21:38.958 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29259 835
17-03-17 22:21:39.108 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning grn on 985
17-03-17 22:21:39.168 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 1441468064, 0x0, 391868352) end. Duration was 401 ms.
17-03-17 22:21:39.168 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 22:21:39.168 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:21:39.168 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:21:39.168 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 22:21:39.278 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 395 ms.
17-03-17 22:21:39.278 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 22:21:39.278 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:21:39.288 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:21:39.288 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 522 ms.
17-03-17 22:21:39.318 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1201
17-03-17 22:21:39.318 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1201
17-03-17 22:21:39.318 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:21:39.318 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:21:39.318 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 1476890328, 0x0, 391868352) start.
17-03-17 22:21:39.328 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1201
17-03-17 22:21:39.328 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1201
17-03-17 22:21:39.328 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:21:39.328 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:21:39.328 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-17 22:21:39.508 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP 1393
17-03-17 22:21:39.518 -07 000000482 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:21:39.518 -07 000000610 INF: FPGA: 'CAMDBLSNAP 450 450 216 216 29259 150' command took 2 ms to send, 1390 ms to get response, and 1401 ms overall
17-03-17 22:21:39.518 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 22:21:39.518 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.73388671875, Z-Position -0.133133231021807. ------
17-03-17 22:21:39.518 -07 000000623 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:21:39.518 -07 000000480 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.13958 mm
17-03-17 22:21:39.518 -07 000000480 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:21:39.518 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:21:39.518 -07 000000482 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-17 22:21:39.518 -07 000000482 INF: Y Motor: Moving to 61.5726 mm, started at 60.7339 mm, delta = 0.8387 mm
17-03-17 22:21:39.528 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:21:39.528 -07 000000623 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 22:21:39.528 -07 000000424 INF: Z Motor: Entering MoveAbsStepped (DAC = 30491, sync = True, waitForSettling = False)
17-03-17 22:21:39.528 -07 000000424 INF: Z Motor: Moving to -0.139579 mm, started at -0.133133 mm, distance = -6.45 um
17-03-17 22:21:39.528 -07 000000486 INF: FPGA: Recv YRDPOS 124383
17-03-17 22:21:39.538 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:21:39.538 -07 000000424 INF: FPGA: Xmit ZDACW 30491\n [Z Motor]
17-03-17 22:21:39.538 -07 000000482 INF: Y Motor: Encoder = 124383 = motor step 97174.2 = 60.7339 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:21:39.538 -07 000000482 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:21:39.538 -07 000000482 INF: Y Motor: Moving 1342 steps-19
17-03-17 22:21:39.538 -07 000000486 INF: FPGA: Recv ZDACW
17-03-17 22:21:39.548 -07 000000424 INF: FPGA: 'ZDACW 30491' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:21:39.548 -07 000000623 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:21:39.558 -07 000000482 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:21:39.568 -07 000000424 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:21:39.568 -07 000000618 INF: FPGA: Recv ZDACR 30491
17-03-17 22:21:39.578 -07 000000424 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:21:39.578 -07 000000424 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-17 22:21:39.728 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 1476890328, 0x0, 391868352) end. Duration was 403 ms.
17-03-17 22:21:39.728 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 22:21:39.728 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:21:39.728 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 401 ms.
17-03-17 22:21:39.728 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 22:21:39.728 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:21:39.728 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:21:39.728 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-17 22:21:39.728 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:21:39.738 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-17 22:21:39.748 -07 000000458 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:21:39.748 -07 000000623 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-17 22:21:39.928 -07 000000561 INF: FPGA: Recv YMVTILE
17-03-17 22:21:39.938 -07 000000482 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 399 ms overall
17-03-17 22:21:39.968 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:21:39.978 -07 000000501 INF: FPGA: Recv YRDPOS 126084
17-03-17 22:21:39.978 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:21:39.978 -07 000000482 INF: Y Motor: Encoder = 126084 = motor step 98503.1 = 61.5645 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:21:39.978 -07 000000482 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-17 22:21:39.978 -07 000000482 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 399 ms, distance = 0.839 mm, average velocity = 2.102 mm/sec
17-03-17 22:21:40.928 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:21:40.928 -07 000000618 INF: FPGA: Recv YRDPOS 126084
17-03-17 22:21:40.938 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:40.938 -07 000000482 INF: Y Motor: Encoder = 126084 = motor step 98503.1 = 61.5645 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:21:40.958 -07 000000482 INF: Y Motor: After move to 61.572609, error = -0.008156, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:21:40.958 -07 000000482 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:21:40.958 -07 000000482 INF: Y Motor: Moved to 61.5645 after 1434 ms (table move)
17-03-17 22:21:40.958 -07 000000480 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139579 mm (DAC = 30491)
17-03-17 22:21:40.958 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:40.968 -07 000000424 INF: FPGA: Recv ZSGSRD 31018
17-03-17 22:21:40.968 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 22:21:40.968 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:40.968 -07 000000482 INF: FPGA: Recv ZSGSRD 31010
17-03-17 22:21:40.978 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:40.978 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:40.978 -07 000000482 INF: FPGA: Recv ZSGSRD 31012
17-03-17 22:21:40.988 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:40.988 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:40.988 -07 000000561 INF: FPGA: Recv ZSGSRD 31019
17-03-17 22:21:40.998 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:40.998 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:40.998 -07 000000561 INF: FPGA: Recv ZSGSRD 31019
17-03-17 22:21:41.008 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:41.008 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:41.008 -07 000000462 INF: FPGA: Recv ZSGSRD 31021
17-03-17 22:21:41.018 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:41.018 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:41.018 -07 000000462 INF: FPGA: Recv ZSGSRD 31011
17-03-17 22:21:41.028 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:41.028 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:41.028 -07 000000561 INF: FPGA: Recv ZSGSRD 31014
17-03-17 22:21:41.038 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:41.038 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:41.038 -07 000000462 INF: FPGA: Recv ZSGSRD 31011
17-03-17 22:21:41.048 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:41.048 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:41.048 -07 000000561 INF: FPGA: Recv ZSGSRD 31011
17-03-17 22:21:41.058 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:41.058 -07 000000480 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:21:41.058 -07 000000561 INF: FPGA: Recv ZPIEZORD 26970
17-03-17 22:21:41.068 -07 000000480 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:41.068 -07 000000480 INF: Z Motor: Piezo is near 37.6 V (nominally 0 to 100 V), expect near 46.5 V, since DAC is at 4.653 V. Piezo Error = -8.9 V.
17-03-17 22:21:41.068 -07 000000480 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.6 um, Read 10 ADC samples: Avg = 31015 (-138.8 uncal um), Error = 0.8 uncal um, Median = 31013 (-138.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 31010 (-138.7 uncal um), Max = 31021 (-138.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 22:21:41.068 -07 000000480 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31015, posNoise = 6, negNoise = 5
17-03-17 22:21:41.068 -07 000000480 INF: Z Motor: After move to -0.139579, error = 0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:21:41.068 -07 000000480 INF: Z Motor: Settle wait time = 1436 ms, measure time = 103 ms (allowed 150 ms), total time = 1539 ms
17-03-17 22:21:41.068 -07 000000480 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 22:21:41.118 -07 000000480 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1594 ms
17-03-17 22:21:41.118 -07 000000480 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:21:41.118 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:21:41.118 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:21:41.118 -07 000000458 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:21:41.118 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:21:41.118 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:21:41.118 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:21:41.118 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:21:41.118 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:21:41.128 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 22:21:41.128 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:21:41.138 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 22:21:41.138 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 22:21:41.138 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:21:41.968 -07 000000561 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:21:41.968 -07 000000561 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:21:41.968 -07 000000561 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:21:41.968 -07 000000561 INF: FPGA: Recv CAMSNAP
17-03-17 22:21:41.968 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 820 ms to get response, and 822 ms overall
17-03-17 22:21:41.968 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:21:41.968 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:21:41.968 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:21:41.968 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 608668944, 0x0, 559484976) start.
17-03-17 22:21:42.078 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 608668944, 0x0, 559484976) end. Duration was 113 ms.
17-03-17 22:21:42.078 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:21:42.078 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:21:42.078 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 116 ms.
17-03-17 22:21:42.088 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 61. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=992, R2=1018, Total=2010. Warn if over 250 bubbles per interval.
17-03-17 22:21:42.168 -07 000000569 INF: Autofocus start
17-03-17 22:21:42.168 -07 000000569 INF: MeasureProfile start
17-03-17 22:21:42.168 -07 000000623 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:21:42.168 -07 000000482 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:21:42.178 -07 000000623 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 22:21:42.178 -07 000000623 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:21:42.178 -07 000000569 INF: MeasureProfile done
17-03-17 22:21:42.178 -07 000000569 INF: X=-16  Z correction [um]=-0.08128808
17-03-17 22:21:42.178 -07 000000569 INF: Autofocus finished
17-03-17 22:21:42.378 -07 000000459 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:21:42.378 -07 000000623 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:21:42.378 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.564453125, Z-position -0.139570291587851. ----------
17-03-17 22:21:42.378 -07 000000610 INF: Cycle	62	Tile	3	Exposure Settings		A	450	G	216	T	216	C	450
17-03-17 22:21:42.388 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28986, sync = True, waitForSettling = True)
17-03-17 22:21:42.388 -07 000000610 INF: Z Motor: Moving to -0.132689 mm, started at -0.139570 mm, distance = 6.88 um
17-03-17 22:21:42.388 -07 000000610 INF: FPGA: Xmit ZDACW 28986\n [Z Motor]
17-03-17 22:21:42.388 -07 000000569 INF: FPGA: Recv ZDACW
17-03-17 22:21:42.398 -07 000000610 INF: FPGA: 'ZDACW 28986' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:21:42.398 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:21:42.398 -07 000000569 INF: FPGA: Recv ZDACR 28986
17-03-17 22:21:42.408 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:42.408 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:21:42.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:42.558 -07 000000561 INF: FPGA: Recv ZSGSRD 29953
17-03-17 22:21:42.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:21:42.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:42.568 -07 000000569 INF: FPGA: Recv ZSGSRD 29946
17-03-17 22:21:42.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:42.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:42.578 -07 000000561 INF: FPGA: Recv ZSGSRD 29941
17-03-17 22:21:42.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:42.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:42.588 -07 000000561 INF: FPGA: Recv ZSGSRD 29948
17-03-17 22:21:42.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:42.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:42.598 -07 000000569 INF: FPGA: Recv ZSGSRD 29945
17-03-17 22:21:42.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:42.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:42.608 -07 000000561 INF: FPGA: Recv ZSGSRD 29946
17-03-17 22:21:42.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:42.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:42.618 -07 000000459 INF: FPGA: Recv ZSGSRD 29942
17-03-17 22:21:42.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:42.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:42.628 -07 000000459 INF: FPGA: Recv ZSGSRD 29945
17-03-17 22:21:42.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:42.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:42.638 -07 000000618 INF: FPGA: Recv ZSGSRD 29951
17-03-17 22:21:42.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:42.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:42.648 -07 000000618 INF: FPGA: Recv ZSGSRD 29940
17-03-17 22:21:42.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:42.658 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:21:42.658 -07 000000618 INF: FPGA: Recv ZPIEZORD 25604
17-03-17 22:21:42.668 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:42.668 -07 000000610 INF: Z Motor: Piezo is near 34.7 V (nominally 0 to 100 V), expect near 44.2 V, since DAC is at 4.423 V. Piezo Error = -9.5 V.
17-03-17 22:21:42.668 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.7 um, Read 10 ADC samples: Avg = 29946 (-131.9 uncal um), Error = 0.8 uncal um, Median = 29946 (-131.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29940 (-131.9 uncal um), Max = 29953 (-132.0 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 22:21:42.668 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29946, posNoise = 7, negNoise = 6
17-03-17 22:21:42.668 -07 000000610 INF: Z Motor: After move to -0.132689, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:21:42.668 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 22:21:42.668 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:21:42.668 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:21:42.668 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:21:42.668 -07 000000482 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:21:42.668 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:21:42.668 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:21:42.668 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:21:42.668 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:21:42.668 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:21:42.668 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:21:42.668 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:21:42.668 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:21:42.678 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 22:21:42.678 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:21:42.678 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:21:42.678 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:21:42.688 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-17 22:21:42.688 -07 000000482 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 18 ms.
17-03-17 22:21:42.688 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-17 22:21:42.688 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 22:21:42.688 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 450 450 216 216 29163 150\n [Camera]
17-03-17 22:21:42.888 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:21:43.128 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 62, FrontChillerTemperature: 3.994908,
17-03-17 22:21:43.338 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 642
17-03-17 22:21:43.338 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 642
17-03-17 22:21:43.348 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:21:43.348 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:21:43.348 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start.
17-03-17 22:21:43.348 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 643
17-03-17 22:21:43.348 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 643
17-03-17 22:21:43.348 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:21:43.348 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:21:43.348 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) start.
17-03-17 22:21:43.538 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29163 835
17-03-17 22:21:43.688 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning grn on 985
17-03-17 22:21:43.738 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 393 ms.
17-03-17 22:21:43.738 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 22:21:43.738 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:21:43.738 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) end. Duration was 389 ms.
17-03-17 22:21:43.738 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 22:21:43.738 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:21:43.738 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:21:43.738 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 22:21:43.738 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:21:43.748 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 22:21:43.898 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1201
17-03-17 22:21:43.898 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1201
17-03-17 22:21:43.898 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:21:43.908 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:21:43.908 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 22:21:43.908 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1201
17-03-17 22:21:43.908 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1201
17-03-17 22:21:43.908 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:21:43.908 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:21:43.908 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 22:21:44.088 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP 1394
17-03-17 22:21:44.098 -07 000000618 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:21:44.098 -07 000000610 INF: FPGA: 'CAMDBLSNAP 450 450 216 216 29163 150' command took 2 ms to send, 1389 ms to get response, and 1401 ms overall
17-03-17 22:21:44.098 -07 000000610 INF: Skipping AutoFocus in Tile 4: adopting Best-Z from the cache: -0.133109
17-03-17 22:21:44.098 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.13311 mm
17-03-17 22:21:44.098 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:21:44.098 -07 000000458 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-17 22:21:44.098 -07 000000458 INF: Y Motor: Moving to 62.4026 mm, started at 61.5645 mm, delta = 0.8382 mm
17-03-17 22:21:44.098 -07 000000458 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:21:44.098 -07 000000462 INF: Z Motor: Entering MoveAbsStepped (DAC = 29078, sync = True, waitForSettling = False)
17-03-17 22:21:44.098 -07 000000462 INF: Z Motor: Moving to -0.133111 mm, started at -0.132703 mm, distance = -0.41 um
17-03-17 22:21:44.098 -07 000000424 INF: FPGA: Recv YRDPOS 126085
17-03-17 22:21:44.108 -07 000000458 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 22:21:44.108 -07 000000458 INF: Y Motor: Encoder = 126085 = motor step 98503.9 = 61.5649 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:21:44.108 -07 000000462 INF: FPGA: Xmit ZDACW 29078\n [Z Motor]
17-03-17 22:21:44.108 -07 000000551 INF: FPGA: Recv ZDACW
17-03-17 22:21:44.108 -07 000000458 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:21:44.108 -07 000000458 INF: Y Motor: Moving 1340 steps-17
17-03-17 22:21:44.118 -07 000000462 INF: FPGA: 'ZDACW 29078' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 22:21:44.118 -07 000000458 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:21:44.128 -07 000000462 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:21:44.128 -07 000000424 INF: FPGA: Recv ZDACR 29078
17-03-17 22:21:44.138 -07 000000462 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:21:44.138 -07 000000462 INF: Z Motor: MoveAbsStepped took 35 ms (did NOT wait for settling yet))
17-03-17 22:21:44.308 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 403 ms.
17-03-17 22:21:44.308 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 22:21:44.308 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:21:44.308 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 402 ms.
17-03-17 22:21:44.308 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 22:21:44.308 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:21:44.308 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:21:44.318 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-17 22:21:44.318 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:21:44.318 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-17 22:21:44.498 -07 000000486 INF: FPGA: Recv YMVTILE
17-03-17 22:21:44.498 -07 000000458 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 388 ms overall
17-03-17 22:21:44.538 -07 000000458 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:21:44.538 -07 000000576 INF: FPGA: Recv YRDPOS 127787
17-03-17 22:21:44.548 -07 000000458 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:21:44.548 -07 000000458 INF: Y Motor: Encoder = 127787 = motor step 99833.6 = 62.3960 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:21:44.548 -07 000000458 INF: Y Motor: Position error before settling (table move) = -14 encoder counts (-0.007 mm)
17-03-17 22:21:44.548 -07 000000458 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.838 mm, average velocity = 2.160 mm/sec
17-03-17 22:21:45.498 -07 000000458 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:21:45.498 -07 000000561 INF: FPGA: Recv YRDPOS 127787
17-03-17 22:21:45.508 -07 000000458 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:21:45.508 -07 000000458 INF: Y Motor: Encoder = 127787 = motor step 99833.6 = 62.3960 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:21:45.528 -07 000000458 INF: Y Motor: After move to 62.402607, error = -0.006611, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:21:45.528 -07 000000458 INF: Y Motor: Position error after settling (table move) = -14 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:21:45.528 -07 000000458 INF: Y Motor: Moved to 62.3960 after 1432 ms (table move)
17-03-17 22:21:45.538 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.133111 mm (DAC = 29078)
17-03-17 22:21:45.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:45.538 -07 000000480 INF: FPGA: Recv ZSGSRD 30006
17-03-17 22:21:45.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:21:45.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:45.548 -07 000000459 INF: FPGA: Recv ZSGSRD 30003
17-03-17 22:21:45.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:45.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:45.558 -07 000000623 INF: FPGA: Recv ZSGSRD 30013
17-03-17 22:21:45.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:45.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:45.568 -07 000000576 INF: FPGA: Recv ZSGSRD 30006
17-03-17 22:21:45.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:45.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:45.578 -07 000000618 INF: FPGA: Recv ZSGSRD 30014
17-03-17 22:21:45.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:45.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:45.588 -07 000000480 INF: FPGA: Recv ZSGSRD 30021
17-03-17 22:21:45.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:45.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:45.598 -07 000000424 INF: FPGA: Recv ZSGSRD 30007
17-03-17 22:21:45.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:45.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:45.608 -07 000000623 INF: FPGA: Recv ZSGSRD 30007
17-03-17 22:21:45.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:45.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:45.618 -07 000000576 INF: FPGA: Recv ZSGSRD 30005
17-03-17 22:21:45.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:45.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:45.628 -07 000000501 INF: FPGA: Recv ZSGSRD 30009
17-03-17 22:21:45.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:45.638 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:21:45.638 -07 000000480 INF: FPGA: Recv ZPIEZORD 25710
17-03-17 22:21:45.648 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:45.648 -07 000000610 INF: Z Motor: Piezo is near 34.9 V (nominally 0 to 100 V), expect near 44.4 V, since DAC is at 4.437 V. Piezo Error = -9.4 V.
17-03-17 22:21:45.648 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.1 um, Read 10 ADC samples: Avg = 30009 (-132.3 uncal um), Error = 0.8 uncal um, Median = 30007 (-132.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 30003 (-132.3 uncal um), Max = 30021 (-132.4 uncal um), Pos Noise = 12 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 22:21:45.648 -07 000000610 INF: Z Motor: ADC noise = 12, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30009, posNoise = 12, negNoise = 6
17-03-17 22:21:45.648 -07 000000610 INF: Z Motor: After move to -0.133111, error = 0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:21:45.648 -07 000000610 INF: Z Motor: Settle wait time = 1436 ms, measure time = 109 ms (allowed 150 ms), total time = 1545 ms
17-03-17 22:21:45.648 -07 000000610 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-17 22:21:45.698 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1597 ms
17-03-17 22:21:45.698 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:21:45.698 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.39599609375, Z-position -0.13310753417324. ----------
17-03-17 22:21:45.698 -07 000000610 INF: Cycle	62	Tile	4	Exposure Settings		A	450	G	216	T	216	C	450
17-03-17 22:21:45.698 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28901, sync = True, waitForSettling = True)
17-03-17 22:21:45.698 -07 000000610 INF: Z Motor: Moving to -0.132300 mm, started at -0.133108 mm, distance = 0.81 um
17-03-17 22:21:45.698 -07 000000610 INF: FPGA: Xmit ZDACW 28901\n [Z Motor]
17-03-17 22:21:45.708 -07 000000462 INF: FPGA: Recv ZDACW
17-03-17 22:21:45.708 -07 000000610 INF: FPGA: 'ZDACW 28901' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 22:21:45.708 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:21:45.708 -07 000000486 INF: FPGA: Recv ZDACR 28901
17-03-17 22:21:45.718 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:45.718 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:21:45.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:45.868 -07 000000576 INF: FPGA: Recv ZSGSRD 29883
17-03-17 22:21:45.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:45.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:45.878 -07 000000502 INF: FPGA: Recv ZSGSRD 29888
17-03-17 22:21:45.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:45.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:45.888 -07 000000382 INF: FPGA: Recv ZSGSRD 29884
17-03-17 22:21:45.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:45.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:45.898 -07 000000462 INF: FPGA: Recv ZSGSRD 29883
17-03-17 22:21:45.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:45.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:45.908 -07 000000618 INF: FPGA: Recv ZSGSRD 29888
17-03-17 22:21:45.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:45.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:45.918 -07 000000458 INF: FPGA: Recv ZSGSRD 29881
17-03-17 22:21:45.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:45.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:45.928 -07 000000502 INF: FPGA: Recv ZSGSRD 29878
17-03-17 22:21:45.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:45.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:45.938 -07 000000569 INF: FPGA: Recv ZSGSRD 29884
17-03-17 22:21:45.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:45.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:45.948 -07 000000462 INF: FPGA: Recv ZSGSRD 29887
17-03-17 22:21:45.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:45.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:45.958 -07 000000459 INF: FPGA: Recv ZSGSRD 29890
17-03-17 22:21:45.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:45.968 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:21:45.968 -07 000000458 INF: FPGA: Recv ZPIEZORD 25563
17-03-17 22:21:45.978 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:45.978 -07 000000610 INF: Z Motor: Piezo is near 34.6 V (nominally 0 to 100 V), expect near 44.1 V, since DAC is at 4.410 V. Piezo Error = -9.5 V.
17-03-17 22:21:45.978 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.3 um, Read 10 ADC samples: Avg = 29885 (-131.5 uncal um), Error = 0.8 uncal um, Median = 29884 (-131.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29878 (-131.5 uncal um), Max = 29890 (-131.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 22:21:45.978 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29885, posNoise = 5, negNoise = 7
17-03-17 22:21:45.978 -07 000000610 INF: Z Motor: After move to -0.132300, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:21:45.978 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-17 22:21:45.978 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:21:45.978 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:21:45.978 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:21:45.978 -07 000000459 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:21:45.978 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:21:45.978 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:21:45.978 -07 000000623 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:21:45.978 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:21:45.978 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:21:45.978 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:21:45.978 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:21:45.978 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:21:45.988 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:21:45.988 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:21:45.988 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:21:45.988 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:21:45.998 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 22:21:45.998 -07 000000459 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 22:21:45.998 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 22:21:45.998 -07 000000623 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 22:21:45.998 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 450 450 216 216 29078 150\n [Camera]
17-03-17 22:21:46.198 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:21:46.648 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 642
17-03-17 22:21:46.648 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 642
17-03-17 22:21:46.648 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:21:46.648 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:21:46.648 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-17 22:21:46.648 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 642
17-03-17 22:21:46.648 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 642
17-03-17 22:21:46.648 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:21:46.648 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:21:46.648 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 22:21:46.848 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29078 838
17-03-17 22:21:46.968 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:21:46.968 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 61. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=992, R2=1018, Total=2010. Warn if over 250 bubbles per interval.
17-03-17 22:21:47.098 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 450 ms.
17-03-17 22:21:47.098 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 451 ms.
17-03-17 22:21:47.098 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:21:47.098 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning grn on 985
17-03-17 22:21:47.098 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 448 ms.
17-03-17 22:21:47.098 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 449 ms.
17-03-17 22:21:47.098 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:21:47.108 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:21:47.108 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 456 ms.
17-03-17 22:21:47.108 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:21:47.108 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 461 ms.
17-03-17 22:21:47.208 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1201
17-03-17 22:21:47.208 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1201
17-03-17 22:21:47.208 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:21:47.208 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1201
17-03-17 22:21:47.208 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1201
17-03-17 22:21:47.208 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:21:47.218 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:21:47.218 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 22:21:47.218 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:21:47.218 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 22:21:47.398 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP 1394
17-03-17 22:21:47.398 -07 000000424 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:21:47.398 -07 000000610 INF: FPGA: 'CAMDBLSNAP 450 450 216 216 29078 150' command took 2 ms to send, 1395 ms to get response, and 1401 ms overall
17-03-17 22:21:47.398 -07 000000610 INF: Skipping AutoFocus in Tile 5: adopting Best-Z from the cache: -0.133070
17-03-17 22:21:47.398 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.13307 mm
17-03-17 22:21:47.398 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:21:47.408 -07 000000486 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-17 22:21:47.408 -07 000000448 INF: Z Motor: Entering MoveAbsStepped (DAC = 29069, sync = True, waitForSettling = False)
17-03-17 22:21:47.408 -07 000000448 INF: Z Motor: Moving to -0.133069 mm, started at -0.132311 mm, distance = -0.76 um
17-03-17 22:21:47.408 -07 000000448 INF: FPGA: Xmit ZDACW 29069\n [Z Motor]
17-03-17 22:21:47.408 -07 000000486 INF: Y Motor: Moving to 63.2326 mm, started at 62.3960 mm, delta = 0.8366 mm
17-03-17 22:21:47.408 -07 000000480 INF: FPGA: Recv ZDACW
17-03-17 22:21:47.418 -07 000000448 INF: FPGA: 'ZDACW 29069' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:21:47.418 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:21:47.418 -07 000000438 INF: FPGA: Recv YRDPOS 127787
17-03-17 22:21:47.428 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-17 22:21:47.428 -07 000000486 INF: Y Motor: Encoder = 127787 = motor step 99833.6 = 62.3960 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:21:47.428 -07 000000486 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:21:47.428 -07 000000448 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:21:47.428 -07 000000486 INF: Y Motor: Moving 1339 steps-14
17-03-17 22:21:47.428 -07 000000623 INF: FPGA: Recv ZDACR 29069
17-03-17 22:21:47.438 -07 000000448 INF: FPGA: 'ZDACR' command took 3 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:21:47.438 -07 000000448 INF: Z Motor: MoveAbsStepped took 28 ms (did NOT wait for settling yet))
17-03-17 22:21:47.438 -07 000000486 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:21:47.598 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 375 ms.
17-03-17 22:21:47.598 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-17 22:21:47.598 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:21:47.598 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 22:21:47.598 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 22:21:47.598 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:21:47.598 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:21:47.598 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 22:21:47.598 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:21:47.608 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 22:21:47.808 -07 000000424 INF: FPGA: Recv YMVTILE
17-03-17 22:21:47.808 -07 000000486 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 385 ms overall
17-03-17 22:21:47.848 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:21:47.858 -07 000000618 INF: FPGA: Recv YRDPOS 129485
17-03-17 22:21:47.858 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 22:21:47.858 -07 000000486 INF: Y Motor: Encoder = 129485 = motor step 101160.2 = 63.2251 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:21:47.858 -07 000000486 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-17 22:21:47.858 -07 000000486 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 385 ms, distance = 0.837 mm, average velocity = 2.173 mm/sec
17-03-17 22:21:48.488 -07 000000482 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 62, FrontChillerTemperature: 4.020806,
17-03-17 22:21:48.808 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:21:48.808 -07 000000501 INF: FPGA: Recv YRDPOS 129485
17-03-17 22:21:48.818 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:21:48.818 -07 000000486 INF: Y Motor: Encoder = 129485 = motor step 101160.2 = 63.2251 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:21:48.838 -07 000000486 INF: Y Motor: After move to 63.232609, error = -0.007511, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:21:48.838 -07 000000486 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:21:48.838 -07 000000486 INF: Y Motor: Moved to 63.2251 after 1433 ms (table move)
17-03-17 22:21:48.838 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.133069 mm (DAC = 29069)
17-03-17 22:21:48.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:48.848 -07 000000569 INF: FPGA: Recv ZSGSRD 30008
17-03-17 22:21:48.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 22:21:48.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:48.848 -07 000000551 INF: FPGA: Recv ZSGSRD 29997
17-03-17 22:21:48.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:48.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:48.868 -07 000000576 INF: FPGA: Recv ZSGSRD 30004
17-03-17 22:21:48.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:21:48.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:48.878 -07 000000462 INF: FPGA: Recv ZSGSRD 30008
17-03-17 22:21:48.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:48.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:48.888 -07 000000569 INF: FPGA: Recv ZSGSRD 30006
17-03-17 22:21:48.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:48.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:48.898 -07 000000462 INF: FPGA: Recv ZSGSRD 30008
17-03-17 22:21:48.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:48.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:48.908 -07 000000480 INF: FPGA: Recv ZSGSRD 30001
17-03-17 22:21:48.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:48.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:48.918 -07 000000551 INF: FPGA: Recv ZSGSRD 30002
17-03-17 22:21:48.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:48.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:48.928 -07 000000480 INF: FPGA: Recv ZSGSRD 30004
17-03-17 22:21:48.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:48.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:48.938 -07 000000551 INF: FPGA: Recv ZSGSRD 30000
17-03-17 22:21:48.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:48.948 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:21:48.948 -07 000000480 INF: FPGA: Recv ZPIEZORD 25728
17-03-17 22:21:48.958 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:48.958 -07 000000610 INF: Z Motor: Piezo is near 35.0 V (nominally 0 to 100 V), expect near 44.4 V, since DAC is at 4.436 V. Piezo Error = -9.4 V.
17-03-17 22:21:48.958 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.1 um, Read 10 ADC samples: Avg = 30004 (-132.3 uncal um), Error = 0.8 uncal um, Median = 30004 (-132.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29997 (-132.2 uncal um), Max = 30008 (-132.3 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 22:21:48.958 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30004, posNoise = 4, negNoise = 7
17-03-17 22:21:48.958 -07 000000610 INF: Z Motor: After move to -0.133069, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:21:48.958 -07 000000610 INF: Z Motor: Settle wait time = 1435 ms, measure time = 114 ms (allowed 150 ms), total time = 1549 ms
17-03-17 22:21:48.958 -07 000000610 INF: Z Motor: Waiting extra 36 ms after reading position to reach expected total of 150 ms
17-03-17 22:21:48.998 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1591 ms
17-03-17 22:21:48.998 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:21:48.998 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.22509765625, Z-position -0.133075413112531. ----------
17-03-17 22:21:48.998 -07 000000610 INF: Cycle	62	Tile	5	Exposure Settings		A	450	G	216	T	216	C	450
17-03-17 22:21:48.998 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28892, sync = True, waitForSettling = True)
17-03-17 22:21:48.998 -07 000000610 INF: Z Motor: Moving to -0.132259 mm, started at -0.133075 mm, distance = 0.82 um
17-03-17 22:21:48.998 -07 000000610 INF: FPGA: Xmit ZDACW 28892\n [Z Motor]
17-03-17 22:21:48.998 -07 000000576 INF: FPGA: Recv ZDACW
17-03-17 22:21:49.008 -07 000000610 INF: FPGA: 'ZDACW 28892' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:21:49.008 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:21:49.008 -07 000000486 INF: FPGA: Recv ZDACR 28892
17-03-17 22:21:49.018 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:49.018 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:21:49.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:49.178 -07 000000576 INF: FPGA: Recv ZSGSRD 29880
17-03-17 22:21:49.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:21:49.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:49.188 -07 000000569 INF: FPGA: Recv ZSGSRD 29880
17-03-17 22:21:49.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:49.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:49.218 -07 000000576 INF: FPGA: Recv ZSGSRD 29875
17-03-17 22:21:49.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:21:49.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:49.238 -07 000000480 INF: FPGA: Recv ZSGSRD 29875
17-03-17 22:21:49.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:21:49.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:49.248 -07 000000501 INF: FPGA: Recv ZSGSRD 29878
17-03-17 22:21:49.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:21:49.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:49.268 -07 000000576 INF: FPGA: Recv ZSGSRD 29877
17-03-17 22:21:49.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:21:49.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:49.278 -07 000000501 INF: FPGA: Recv ZSGSRD 29883
17-03-17 22:21:49.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:49.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:49.288 -07 000000576 INF: FPGA: Recv ZSGSRD 29874
17-03-17 22:21:49.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:49.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:49.298 -07 000000501 INF: FPGA: Recv ZSGSRD 29879
17-03-17 22:21:49.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:49.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:49.308 -07 000000480 INF: FPGA: Recv ZSGSRD 29874
17-03-17 22:21:49.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:49.318 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:21:49.318 -07 000000569 INF: FPGA: Recv ZPIEZORD 25540
17-03-17 22:21:49.328 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:49.328 -07 000000610 INF: Z Motor: Piezo is near 34.6 V (nominally 0 to 100 V), expect near 44.1 V, since DAC is at 4.409 V. Piezo Error = -9.5 V.
17-03-17 22:21:49.328 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.3 um, Read 10 ADC samples: Avg = 29878 (-131.5 uncal um), Error = 0.8 uncal um, Median = 29878 (-131.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29874 (-131.5 uncal um), Max = 29883 (-131.5 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 22:21:49.328 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29878, posNoise = 5, negNoise = 4
17-03-17 22:21:49.328 -07 000000610 INF: Z Motor: After move to -0.132259, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:21:49.328 -07 000000610 INF: Z Motor: MoveAbsStepped took 324 ms)
17-03-17 22:21:49.328 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:21:49.328 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:21:49.328 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:21:49.328 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:21:49.328 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:21:49.328 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:21:49.328 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:21:49.328 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:21:49.328 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:21:49.328 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:21:49.328 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:21:49.328 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:21:49.338 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:21:49.338 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:21:49.338 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:21:49.338 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:21:49.348 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 22:21:49.348 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 22:21:49.348 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 22:21:49.348 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 22:21:49.358 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 450 450 216 216 29069 150\n [Camera]
17-03-17 22:21:49.558 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:21:50.008 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 642
17-03-17 22:21:50.008 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 642
17-03-17 22:21:50.008 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:21:50.008 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:21:50.008 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 642
17-03-17 22:21:50.008 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 642
17-03-17 22:21:50.008 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 22:21:50.008 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:21:50.008 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:21:50.008 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) start.
17-03-17 22:21:50.198 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29069 835
17-03-17 22:21:50.348 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP turning grn on 985
17-03-17 22:21:50.378 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 22:21:50.378 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-17 22:21:50.378 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:21:50.388 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 22:21:50.388 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 22:21:50.388 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:21:50.388 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 22:21:50.388 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 22:21:50.388 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 22:21:50.398 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 22:21:50.558 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1201
17-03-17 22:21:50.558 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1201
17-03-17 22:21:50.568 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:21:50.568 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:21:50.568 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1476890328, 0x0, 391868352) start.
17-03-17 22:21:50.568 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1201
17-03-17 22:21:50.568 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1201
17-03-17 22:21:50.568 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:21:50.568 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:21:50.568 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-17 22:21:50.758 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP 1394
17-03-17 22:21:50.758 -07 000000480 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:21:50.758 -07 000000610 INF: FPGA: 'CAMDBLSNAP 450 450 216 216 29069 150' command took 2 ms to send, 1391 ms to get response, and 1400 ms overall
17-03-17 22:21:50.758 -07 000000610 INF: Skipping AutoFocus in Tile 6: adopting Best-Z from the cache: -0.132760
17-03-17 22:21:50.758 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.13276 mm
17-03-17 22:21:50.758 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:21:50.758 -07 000000576 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-17 22:21:50.758 -07 000000576 INF: Y Motor: Moving to 64.0626 mm, started at 63.2251 mm, delta = 0.8375 mm
17-03-17 22:21:50.758 -07 000000482 INF: Z Motor: Entering MoveAbsStepped (DAC = 29001, sync = True, waitForSettling = False)
17-03-17 22:21:50.758 -07 000000482 INF: Z Motor: Moving to -0.132758 mm, started at -0.132266 mm, distance = -0.49 um
17-03-17 22:21:50.758 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:21:50.758 -07 000000502 INF: FPGA: Recv YRDPOS 129485
17-03-17 22:21:50.888 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 124 ms overall
17-03-17 22:21:50.888 -07 000000576 INF: Y Motor: Encoder = 129485 = motor step 101160.2 = 63.2251 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:21:50.888 -07 000000576 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:21:50.888 -07 000000576 INF: Y Motor: Moving 1340 steps-15
17-03-17 22:21:50.888 -07 000000482 INF: FPGA: Xmit ZDACW 29001\n [Z Motor]
17-03-17 22:21:50.888 -07 000000459 INF: FPGA: Recv ZDACW
17-03-17 22:21:50.898 -07 000000482 INF: FPGA: 'ZDACW 29001' command took 1 ms to send, 0 ms to get response, and 133 ms overall
17-03-17 22:21:50.898 -07 000000482 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:21:50.898 -07 000000448 INF: FPGA: Recv ZDACR 29001
17-03-17 22:21:50.908 -07 000000576 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:21:50.908 -07 000000482 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:50.908 -07 000000482 INF: Z Motor: MoveAbsStepped took 144 ms (did NOT wait for settling yet))
17-03-17 22:21:50.958 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1476890328, 0x0, 391868352) end. Duration was 392 ms.
17-03-17 22:21:50.958 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 22:21:50.958 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:21:50.958 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 391 ms.
17-03-17 22:21:50.958 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 22:21:50.958 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:21:50.958 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:21:50.958 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 22:21:50.958 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:21:50.968 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 22:21:51.278 -07 000000501 INF: FPGA: Recv YMVTILE
17-03-17 22:21:51.278 -07 000000576 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 22:21:51.318 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:21:51.328 -07 000000482 INF: FPGA: Recv YRDPOS 131190
17-03-17 22:21:51.328 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 22:21:51.328 -07 000000576 INF: Y Motor: Encoder = 131190 = motor step 102492.2 = 64.0576 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:21:51.328 -07 000000576 INF: Y Motor: Position error before settling (table move) = -10 encoder counts (-0.005 mm)
17-03-17 22:21:51.328 -07 000000576 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.838 mm, average velocity = 2.110 mm/sec
17-03-17 22:21:51.968 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:21:51.968 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 61. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=992, R2=1018, Total=2010. Warn if over 250 bubbles per interval.
17-03-17 22:21:52.278 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:21:52.278 -07 000000486 INF: FPGA: Recv YRDPOS 131190
17-03-17 22:21:52.288 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:21:52.288 -07 000000576 INF: Y Motor: Encoder = 131190 = motor step 102492.2 = 64.0576 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:21:52.298 -07 000000576 INF: Y Motor: After move to 64.062607, error = -0.004990, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:21:52.298 -07 000000576 INF: Y Motor: Position error after settling (table move) = -10 encoder counts (-0.005 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:21:52.298 -07 000000576 INF: Y Motor: Moved to 64.0576 after 1543 ms (table move)
17-03-17 22:21:52.308 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.132758 mm (DAC = 29001)
17-03-17 22:21:52.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:52.308 -07 000000424 INF: FPGA: Recv ZSGSRD 29958
17-03-17 22:21:52.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:21:52.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:52.318 -07 000000482 INF: FPGA: Recv ZSGSRD 29951
17-03-17 22:21:52.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:52.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:52.328 -07 000000502 INF: FPGA: Recv ZSGSRD 29956
17-03-17 22:21:52.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:52.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:52.338 -07 000000482 INF: FPGA: Recv ZSGSRD 29960
17-03-17 22:21:52.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:52.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:52.348 -07 000000551 INF: FPGA: Recv ZSGSRD 29957
17-03-17 22:21:52.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:52.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:52.358 -07 000000424 INF: FPGA: Recv ZSGSRD 29955
17-03-17 22:21:52.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:52.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:52.368 -07 000000482 INF: FPGA: Recv ZSGSRD 29957
17-03-17 22:21:52.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:52.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:52.378 -07 000000501 INF: FPGA: Recv ZSGSRD 29952
17-03-17 22:21:52.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:52.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:52.388 -07 000000482 INF: FPGA: Recv ZSGSRD 29947
17-03-17 22:21:52.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:52.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:52.398 -07 000000501 INF: FPGA: Recv ZSGSRD 29950
17-03-17 22:21:52.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:52.408 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:21:52.408 -07 000000482 INF: FPGA: Recv ZPIEZORD 25705
17-03-17 22:21:52.418 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:52.418 -07 000000610 INF: Z Motor: Piezo is near 34.9 V (nominally 0 to 100 V), expect near 44.3 V, since DAC is at 4.425 V. Piezo Error = -9.3 V.
17-03-17 22:21:52.418 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.8 um, Read 10 ADC samples: Avg = 29954 (-132.0 uncal um), Error = 0.8 uncal um, Median = 29956 (-132.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29947 (-131.9 uncal um), Max = 29960 (-132.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 22:21:52.418 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29954, posNoise = 6, negNoise = 7
17-03-17 22:21:52.418 -07 000000610 INF: Z Motor: After move to -0.132758, error = 0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:21:52.418 -07 000000610 INF: Z Motor: Settle wait time = 1546 ms, measure time = 108 ms (allowed 150 ms), total time = 1654 ms
17-03-17 22:21:52.418 -07 000000610 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-17 22:21:52.468 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1706 ms
17-03-17 22:21:52.468 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:21:52.468 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.0576171875, Z-position -0.132754202505443. ----------
17-03-17 22:21:52.468 -07 000000610 INF: Cycle	62	Tile	6	Exposure Settings		A	450	G	216	T	216	C	450
17-03-17 22:21:52.468 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28825, sync = True, waitForSettling = True)
17-03-17 22:21:52.468 -07 000000610 INF: Z Motor: Moving to -0.131952 mm, started at -0.132754 mm, distance = 0.80 um
17-03-17 22:21:52.468 -07 000000610 INF: FPGA: Xmit ZDACW 28825\n [Z Motor]
17-03-17 22:21:52.468 -07 000000623 INF: FPGA: Recv ZDACW
17-03-17 22:21:52.478 -07 000000610 INF: FPGA: 'ZDACW 28825' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 22:21:52.478 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:21:52.478 -07 000000551 INF: FPGA: Recv ZDACR 28825
17-03-17 22:21:52.488 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:52.488 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:21:52.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:52.638 -07 000000448 INF: FPGA: Recv ZSGSRD 29828
17-03-17 22:21:52.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:21:52.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:52.648 -07 000000623 INF: FPGA: Recv ZSGSRD 29838
17-03-17 22:21:52.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:52.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:52.658 -07 000000448 INF: FPGA: Recv ZSGSRD 29835
17-03-17 22:21:52.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:52.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:52.668 -07 000000551 INF: FPGA: Recv ZSGSRD 29832
17-03-17 22:21:52.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:52.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:52.678 -07 000000448 INF: FPGA: Recv ZSGSRD 29830
17-03-17 22:21:52.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:21:52.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:52.688 -07 000000551 INF: FPGA: Recv ZSGSRD 29834
17-03-17 22:21:52.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:52.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:52.698 -07 000000482 INF: FPGA: Recv ZSGSRD 29826
17-03-17 22:21:52.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:52.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:52.708 -07 000000623 INF: FPGA: Recv ZSGSRD 29829
17-03-17 22:21:52.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:52.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:52.718 -07 000000482 INF: FPGA: Recv ZSGSRD 29831
17-03-17 22:21:52.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:52.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:52.728 -07 000000551 INF: FPGA: Recv ZSGSRD 29831
17-03-17 22:21:52.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:52.738 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:21:52.738 -07 000000623 INF: FPGA: Recv ZPIEZORD 25513
17-03-17 22:21:52.748 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:52.748 -07 000000610 INF: Z Motor: Piezo is near 34.5 V (nominally 0 to 100 V), expect near 44.0 V, since DAC is at 4.398 V. Piezo Error = -9.5 V.
17-03-17 22:21:52.748 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.0 um, Read 10 ADC samples: Avg = 29831 (-131.2 uncal um), Error = 0.8 uncal um, Median = 29831 (-131.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29826 (-131.1 uncal um), Max = 29838 (-131.2 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 22:21:52.748 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29831, posNoise = 7, negNoise = 5
17-03-17 22:21:52.748 -07 000000610 INF: Z Motor: After move to -0.131952, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:21:52.748 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 22:21:52.748 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:21:52.748 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:21:52.748 -07 000000459 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:21:52.748 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:21:52.748 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:21:52.748 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:21:52.748 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:21:52.748 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:21:52.748 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 22:21:52.748 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:21:52.748 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:21:52.748 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:21:52.758 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:21:52.758 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:21:52.758 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:21:52.758 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:21:52.758 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 22:21:52.758 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 22:21:52.768 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 22:21:52.768 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 22:21:52.768 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 450 450 216 216 29001 150\n [Camera]
17-03-17 22:21:52.968 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:21:53.418 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 642
17-03-17 22:21:53.418 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 642
17-03-17 22:21:53.418 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:21:53.418 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 642
17-03-17 22:21:53.418 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 642
17-03-17 22:21:53.418 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:21:53.428 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:21:53.428 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1441468064, 0x0, 391868352) start.
17-03-17 22:21:53.428 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:21:53.428 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 22:21:53.608 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29001 835
17-03-17 22:21:53.758 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP turning grn on 985
17-03-17 22:21:53.798 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1441468064, 0x0, 391868352) end. Duration was 373 ms.
17-03-17 22:21:53.798 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-17 22:21:53.798 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:21:53.798 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 369 ms.
17-03-17 22:21:53.798 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 370 ms.
17-03-17 22:21:53.798 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:21:53.808 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 22:21:53.808 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 22:21:53.808 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 22:21:53.808 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 22:21:53.848 -07 000000459 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 62, FrontChillerTemperature: 3.985358,
17-03-17 22:21:53.978 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1201
17-03-17 22:21:53.978 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1201
17-03-17 22:21:53.978 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:21:53.978 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:21:53.978 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 22:21:53.978 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1201
17-03-17 22:21:53.978 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1201
17-03-17 22:21:53.978 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:21:53.978 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:21:53.978 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) start.
17-03-17 22:21:54.168 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP 1393
17-03-17 22:21:54.168 -07 000000459 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:21:54.168 -07 000000610 INF: FPGA: 'CAMDBLSNAP 450 450 216 216 29001 150' command took 2 ms to send, 1393 ms to get response, and 1400 ms overall
17-03-17 22:21:54.168 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 22:21:54.168 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.0576171875, Z-Position -0.131964024412006. ------
17-03-17 22:21:54.168 -07 000000459 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:21:54.358 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 22:21:54.358 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 22:21:54.358 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:21:54.358 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) end. Duration was 380 ms.
17-03-17 22:21:54.358 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-17 22:21:54.358 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:21:54.358 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:21:54.358 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 22:21:54.368 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:21:54.368 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 22:21:54.368 -07 000000480 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.13849 mm
17-03-17 22:21:54.368 -07 000000480 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:21:54.378 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:21:54.378 -07 000000459 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 205 ms to get response, and 206 ms overall
17-03-17 22:21:54.378 -07 000000459 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:21:54.378 -07 000000502 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-17 22:21:54.378 -07 000000502 INF: Y Motor: Moving to 64.8926 mm, started at 64.0576 mm, delta = 0.8350 mm
17-03-17 22:21:54.388 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:21:55.228 -07 000000618 INF: Z Motor: Entering MoveAbsStepped (DAC = 30253, sync = True, waitForSettling = False)
17-03-17 22:21:55.228 -07 000000618 INF: Z Motor: Moving to -0.138489 mm, started at -0.131964 mm, distance = -6.53 um
17-03-17 22:21:55.228 -07 000000618 INF: FPGA: Xmit ZDACW 30253\n [Z Motor]
17-03-17 22:21:55.728 -07 000000458 INF: FPGA: Recv YRDPOS 131190
17-03-17 22:21:55.728 -07 000000458 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:21:55.728 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1330 ms to get response, and 1343 ms overall
17-03-17 22:21:55.728 -07 000000459 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 1340 ms to get response, and 1344 ms overall
17-03-17 22:21:55.728 -07 000000458 INF: FPGA: Recv ZDACW
17-03-17 22:21:55.728 -07 000000618 INF: FPGA: 'ZDACW 30253' command took 0 ms to send, 491 ms to get response, and 499 ms overall
17-03-17 22:21:55.728 -07 000000618 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:21:55.728 -07 000000502 INF: Y Motor: Encoder = 131190 = motor step 102492.2 = 64.0576 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:21:55.728 -07 000000502 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:21:55.728 -07 000000502 INF: Y Motor: Moving 1336 steps-10
17-03-17 22:21:55.728 -07 000000459 INF: FPGA: Recv ZDACR 30253
17-03-17 22:21:55.738 -07 000000618 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:21:55.738 -07 000000618 INF: Z Motor: MoveAbsStepped took 508 ms (did NOT wait for settling yet))
17-03-17 22:21:55.738 -07 000000502 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:21:56.108 -07 000000618 INF: FPGA: Recv YMVTILE
17-03-17 22:21:56.108 -07 000000502 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 385 ms overall
17-03-17 22:21:56.148 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:21:56.148 -07 000000561 INF: FPGA: Recv YRDPOS 132873
17-03-17 22:21:56.158 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 22:21:56.158 -07 000000502 INF: Y Motor: Encoder = 132873 = motor step 103807.0 = 64.8794 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:21:56.158 -07 000000502 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-17 22:21:56.158 -07 000000502 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 386 ms, distance = 0.835 mm, average velocity = 2.163 mm/sec
17-03-17 22:21:56.968 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:21:56.968 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 61. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=992, R2=1018, Total=2010. Warn if over 250 bubbles per interval.
17-03-17 22:21:57.108 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:21:57.108 -07 000000618 INF: FPGA: Recv YRDPOS 132873
17-03-17 22:21:57.118 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:21:57.118 -07 000000502 INF: Y Motor: Encoder = 132873 = motor step 103807.0 = 64.8794 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:21:57.138 -07 000000502 INF: Y Motor: After move to 64.892609, error = -0.013214, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:21:57.138 -07 000000502 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:21:57.138 -07 000000502 INF: Y Motor: Moved to 64.8794 after 2758 ms (table move)
17-03-17 22:21:57.138 -07 000000480 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138489 mm (DAC = 30253)
17-03-17 22:21:57.138 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:57.148 -07 000000382 INF: FPGA: Recv ZSGSRD 30850
17-03-17 22:21:57.158 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:21:57.158 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:57.158 -07 000000458 INF: FPGA: Recv ZSGSRD 30845
17-03-17 22:21:57.168 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:57.168 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:57.168 -07 000000382 INF: FPGA: Recv ZSGSRD 30850
17-03-17 22:21:57.178 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:57.178 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:57.178 -07 000000502 INF: FPGA: Recv ZSGSRD 30851
17-03-17 22:21:57.188 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:57.188 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:57.188 -07 000000382 INF: FPGA: Recv ZSGSRD 30848
17-03-17 22:21:57.198 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:57.198 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:57.198 -07 000000502 INF: FPGA: Recv ZSGSRD 30846
17-03-17 22:21:57.208 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:57.208 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:57.208 -07 000000382 INF: FPGA: Recv ZSGSRD 30841
17-03-17 22:21:57.218 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:57.218 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:57.218 -07 000000382 INF: FPGA: Recv ZSGSRD 30848
17-03-17 22:21:57.228 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:57.228 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:57.228 -07 000000502 INF: FPGA: Recv ZSGSRD 30845
17-03-17 22:21:57.238 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:57.238 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:57.238 -07 000000382 INF: FPGA: Recv ZSGSRD 30847
17-03-17 22:21:57.248 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:57.248 -07 000000480 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:21:57.248 -07 000000502 INF: FPGA: Recv ZPIEZORD 26887
17-03-17 22:21:57.258 -07 000000480 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:57.258 -07 000000480 INF: Z Motor: Piezo is near 37.4 V (nominally 0 to 100 V), expect near 46.2 V, since DAC is at 4.616 V. Piezo Error = -8.7 V.
17-03-17 22:21:57.258 -07 000000480 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.5 um, Read 10 ADC samples: Avg = 30847 (-137.7 uncal um), Error = 0.8 uncal um, Median = 30848 (-137.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 30841 (-137.7 uncal um), Max = 30851 (-137.7 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 22:21:57.258 -07 000000480 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30847, posNoise = 4, negNoise = 6
17-03-17 22:21:57.258 -07 000000480 INF: Z Motor: After move to -0.138489, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:21:57.258 -07 000000480 INF: Z Motor: Settle wait time = 1918 ms, measure time = 110 ms (allowed 150 ms), total time = 2028 ms
17-03-17 22:21:57.258 -07 000000480 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-17 22:21:57.298 -07 000000480 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2921 ms
17-03-17 22:21:57.298 -07 000000480 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:21:57.298 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:21:57.298 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:21:57.298 -07 000000459 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:21:57.298 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:21:57.298 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:21:57.298 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:21:57.298 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 22:21:57.298 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:21:57.308 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:21:57.308 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:21:57.308 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 22:21:57.308 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-17 22:21:57.318 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:21:57.358 -07 000000480 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:21:57.558 -07 000000480 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:21:57.558 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:21:57.558 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:21:57.558 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 22:21:57.598 -07 000000618 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:21:57.598 -07 000000462 INF: FPGA: Recv CAMSNAP
17-03-17 22:21:57.598 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 285 ms overall
17-03-17 22:21:57.678 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 22:21:57.678 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:21:57.678 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:21:57.678 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 22:21:57.698 -07 000000561 INF: Autofocus start
17-03-17 22:21:57.698 -07 000000561 INF: MeasureProfile start
17-03-17 22:21:57.698 -07 000000623 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:21:57.698 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:21:57.708 -07 000000623 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 22:21:57.708 -07 000000623 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:21:57.708 -07 000000561 INF: MeasureProfile done
17-03-17 22:21:57.708 -07 000000561 INF: X=-41  Z correction [um]=-0.2029836
17-03-17 22:21:57.708 -07 000000561 INF: Autofocus finished
17-03-17 22:21:57.908 -07 000000382 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:21:57.908 -07 000000623 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:21:57.908 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87939453125, Z-position -0.138491023948035. ----------
17-03-17 22:21:57.908 -07 000000610 INF: Cycle	62	Tile	7	Exposure Settings		A	450	G	216	T	216	C	450
17-03-17 22:21:57.918 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28721, sync = True, waitForSettling = True)
17-03-17 22:21:57.918 -07 000000610 INF: Z Motor: Moving to -0.131476 mm, started at -0.138491 mm, distance = 7.01 um
17-03-17 22:21:57.918 -07 000000610 INF: FPGA: Xmit ZDACW 28721\n [Z Motor]
17-03-17 22:21:57.918 -07 000000561 INF: FPGA: Recv ZDACW
17-03-17 22:21:57.928 -07 000000610 INF: FPGA: 'ZDACW 28721' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:21:57.928 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:21:57.928 -07 000000561 INF: FPGA: Recv ZDACR 28721
17-03-17 22:21:57.938 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:57.938 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:21:58.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:58.088 -07 000000480 INF: FPGA: Recv ZSGSRD 29756
17-03-17 22:21:58.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:21:58.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:58.098 -07 000000618 INF: FPGA: Recv ZSGSRD 29754
17-03-17 22:21:58.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:58.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:58.108 -07 000000502 INF: FPGA: Recv ZSGSRD 29753
17-03-17 22:21:58.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:58.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:58.118 -07 000000480 INF: FPGA: Recv ZSGSRD 29759
17-03-17 22:21:58.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:58.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:58.128 -07 000000438 INF: FPGA: Recv ZSGSRD 29760
17-03-17 22:21:58.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:58.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:58.138 -07 000000561 INF: FPGA: Recv ZSGSRD 29757
17-03-17 22:21:58.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:58.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:58.148 -07 000000480 INF: FPGA: Recv ZSGSRD 29753
17-03-17 22:21:58.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:58.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:58.158 -07 000000502 INF: FPGA: Recv ZSGSRD 29752
17-03-17 22:21:58.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:58.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:58.168 -07 000000502 INF: FPGA: Recv ZSGSRD 29749
17-03-17 22:21:58.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:58.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:21:58.178 -07 000000424 INF: FPGA: Recv ZSGSRD 29753
17-03-17 22:21:58.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:58.188 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:21:58.188 -07 000000502 INF: FPGA: Recv ZPIEZORD 25455
17-03-17 22:21:58.198 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:21:58.198 -07 000000610 INF: Z Motor: Piezo is near 34.4 V (nominally 0 to 100 V), expect near 43.8 V, since DAC is at 4.383 V. Piezo Error = -9.4 V.
17-03-17 22:21:58.198 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.5 um, Read 10 ADC samples: Avg = 29755 (-130.7 uncal um), Error = 0.8 uncal um, Median = 29754 (-130.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29749 (-130.7 uncal um), Max = 29760 (-130.7 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 22:21:58.198 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29755, posNoise = 5, negNoise = 6
17-03-17 22:21:58.198 -07 000000610 INF: Z Motor: After move to -0.131476, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:21:58.198 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 22:21:58.198 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:21:58.198 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:21:58.198 -07 000000623 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:21:58.198 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:21:58.198 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:21:58.198 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:21:58.198 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:21:58.198 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 22:21:58.208 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:21:58.208 -07 000000459 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:21:58.208 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:21:58.208 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:21:58.208 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 22:21:58.208 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:21:58.208 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:21:58.208 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:21:58.218 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 22:21:58.218 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 22:21:58.218 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 22:21:58.218 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 22:21:58.218 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 450 450 216 216 28898 150\n [Camera]
17-03-17 22:21:58.418 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:21:58.868 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 642
17-03-17 22:21:58.868 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 642
17-03-17 22:21:58.868 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:21:58.868 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:21:58.868 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-17 22:21:58.868 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 642
17-03-17 22:21:58.868 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 642
17-03-17 22:21:58.868 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:21:58.868 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:21:58.868 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-17 22:21:59.058 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28898 835
17-03-17 22:21:59.208 -07 000000458 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 62, FrontChillerTemperature: 3.983999,
17-03-17 22:21:59.268 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 400 ms.
17-03-17 22:21:59.268 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 22:21:59.268 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:21:59.278 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 400 ms.
17-03-17 22:21:59.278 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 22:21:59.278 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:21:59.278 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:21:59.278 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 22:21:59.278 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:21:59.288 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-17 22:21:59.288 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning grn on 985
17-03-17 22:21:59.428 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1201
17-03-17 22:21:59.428 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1201
17-03-17 22:21:59.428 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:21:59.428 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:21:59.428 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) start.
17-03-17 22:21:59.428 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1201
17-03-17 22:21:59.428 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1201
17-03-17 22:21:59.428 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:21:59.558 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:21:59.558 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 22:21:59.828 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) end. Duration was 396 ms.
17-03-17 22:21:59.828 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 22:21:59.828 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:21:59.828 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 22:21:59.828 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 22:21:59.838 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP 1393
17-03-17 22:21:59.838 -07 000000424 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:21:59.838 -07 000000610 INF: FPGA: 'CAMDBLSNAP 450 450 216 216 28898 150' command took 2 ms to send, 1617 ms to get response, and 1622 ms overall
17-03-17 22:21:59.838 -07 000000610 INF: Skipping AutoFocus in Tile 8: adopting Best-Z from the cache: -0.131743
17-03-17 22:21:59.838 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.13174 mm
17-03-17 22:21:59.838 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:21:59.848 -07 000000424 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-17 22:21:59.848 -07 000000424 INF: Y Motor: Moving to 65.7226 mm, started at 64.8794 mm, delta = 0.8432 mm
17-03-17 22:21:59.848 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:21:59.938 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 382 ms.
17-03-17 22:21:59.938 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-17 22:21:59.938 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:21:59.938 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 22:21:59.948 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 517 ms.
17-03-17 22:21:59.958 -07 000000623 INF: Z Motor: Entering MoveAbsStepped (DAC = 28779, sync = True, waitForSettling = False)
17-03-17 22:21:59.958 -07 000000623 INF: Z Motor: Moving to -0.131742 mm, started at -0.131476 mm, distance = -0.27 um
17-03-17 22:21:59.958 -07 000000623 INF: FPGA: Xmit ZDACW 28779\n [Z Motor]
17-03-17 22:22:00.978 -07 000000482 INF: FPGA: Recv YRDPOS 132873
17-03-17 22:22:00.978 -07 000000482 INF: FPGA: Recv ZDACW
17-03-17 22:22:00.978 -07 000000623 INF: FPGA: 'ZDACW 28779' command took 0 ms to send, 1010 ms to get response, and 1016 ms overall
17-03-17 22:22:00.978 -07 000000623 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:22:00.978 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1120 ms to get response, and 1128 ms overall
17-03-17 22:22:00.978 -07 000000424 INF: Y Motor: Encoder = 132873 = motor step 103807.0 = 64.8794 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:22:00.978 -07 000000424 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:22:00.978 -07 000000424 INF: Y Motor: Moving 1349 steps-27
17-03-17 22:22:00.978 -07 000000482 INF: FPGA: Recv ZDACR 28779
17-03-17 22:22:00.988 -07 000000623 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:22:00.988 -07 000000424 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:22:00.988 -07 000000623 INF: Z Motor: MoveAbsStepped took 1026 ms (did NOT wait for settling yet))
17-03-17 22:22:01.358 -07 000000482 INF: FPGA: Recv YMVTILE
17-03-17 22:22:01.358 -07 000000424 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 386 ms overall
17-03-17 22:22:01.408 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:22:01.408 -07 000000576 INF: FPGA: Recv YRDPOS 134584
17-03-17 22:22:01.418 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:01.418 -07 000000424 INF: Y Motor: Encoder = 134584 = motor step 105143.8 = 65.7148 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:22:01.418 -07 000000424 INF: Y Motor: Position error before settling (table move) = -16 encoder counts (-0.008 mm)
17-03-17 22:22:01.418 -07 000000424 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 386 ms, distance = 0.843 mm, average velocity = 2.184 mm/sec
17-03-17 22:22:01.968 -07 000000448 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:22:01.968 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 61. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=992, R2=1018, Total=2010. Warn if over 250 bubbles per interval.
17-03-17 22:22:02.368 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:22:02.368 -07 000000569 INF: FPGA: Recv YRDPOS 134584
17-03-17 22:22:02.378 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:22:02.378 -07 000000424 INF: Y Motor: Encoder = 134584 = motor step 105143.8 = 65.7148 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:22:02.398 -07 000000424 INF: Y Motor: After move to 65.722610, error = -0.007767, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:22:02.398 -07 000000424 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:22:02.398 -07 000000424 INF: Y Motor: Moved to 65.7148 after 2553 ms (table move)
17-03-17 22:22:02.398 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.131742 mm (DAC = 28779)
17-03-17 22:22:02.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:02.408 -07 000000576 INF: FPGA: Recv ZSGSRD 29797
17-03-17 22:22:02.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 22:22:02.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:02.408 -07 000000482 INF: FPGA: Recv ZSGSRD 29789
17-03-17 22:22:02.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:02.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:02.418 -07 000000424 INF: FPGA: Recv ZSGSRD 29796
17-03-17 22:22:02.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:02.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:02.428 -07 000000501 INF: FPGA: Recv ZSGSRD 29805
17-03-17 22:22:02.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:02.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:02.438 -07 000000424 INF: FPGA: Recv ZSGSRD 29795
17-03-17 22:22:02.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:02.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:02.448 -07 000000501 INF: FPGA: Recv ZSGSRD 29800
17-03-17 22:22:02.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:02.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:02.458 -07 000000482 INF: FPGA: Recv ZSGSRD 29793
17-03-17 22:22:02.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:02.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:02.468 -07 000000501 INF: FPGA: Recv ZSGSRD 29791
17-03-17 22:22:02.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:02.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:02.478 -07 000000576 INF: FPGA: Recv ZSGSRD 29795
17-03-17 22:22:02.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:02.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:02.488 -07 000000482 INF: FPGA: Recv ZSGSRD 29793
17-03-17 22:22:02.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:02.498 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:22:02.498 -07 000000424 INF: FPGA: Recv ZPIEZORD 25528
17-03-17 22:22:02.508 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:02.508 -07 000000610 INF: Z Motor: Piezo is near 34.5 V (nominally 0 to 100 V), expect near 43.9 V, since DAC is at 4.391 V. Piezo Error = -9.4 V.
17-03-17 22:22:02.508 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.7 um, Read 10 ADC samples: Avg = 29795 (-130.9 uncal um), Error = 0.8 uncal um, Median = 29795 (-130.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 29789 (-130.9 uncal um), Max = 29805 (-131.0 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 22:22:02.508 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29795, posNoise = 10, negNoise = 6
17-03-17 22:22:02.508 -07 000000610 INF: Z Motor: After move to -0.131742, error = 0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:22:02.508 -07 000000610 INF: Z Motor: Settle wait time = 2443 ms, measure time = 103 ms (allowed 150 ms), total time = 2546 ms
17-03-17 22:22:02.508 -07 000000610 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 22:22:02.558 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2710 ms
17-03-17 22:22:02.558 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:22:02.558 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.71484375, Z-position -0.131732752774903. ----------
17-03-17 22:22:02.558 -07 000000610 INF: Cycle	62	Tile	8	Exposure Settings		A	450	G	216	T	216	C	450
17-03-17 22:22:02.558 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28602, sync = True, waitForSettling = True)
17-03-17 22:22:02.558 -07 000000610 INF: Z Motor: Moving to -0.130932 mm, started at -0.131733 mm, distance = 0.80 um
17-03-17 22:22:02.558 -07 000000610 INF: FPGA: Xmit ZDACW 28602\n [Z Motor]
17-03-17 22:22:02.558 -07 000000569 INF: FPGA: Recv ZDACW
17-03-17 22:22:02.568 -07 000000610 INF: FPGA: 'ZDACW 28602' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:22:02.568 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:22:02.568 -07 000000501 INF: FPGA: Recv ZDACR 28602
17-03-17 22:22:02.578 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:02.578 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:22:02.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:02.728 -07 000000448 INF: FPGA: Recv ZSGSRD 29674
17-03-17 22:22:02.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:22:02.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:02.738 -07 000000424 INF: FPGA: Recv ZSGSRD 29677
17-03-17 22:22:02.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:02.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:02.748 -07 000000448 INF: FPGA: Recv ZSGSRD 29668
17-03-17 22:22:02.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:02.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:02.758 -07 000000482 INF: FPGA: Recv ZSGSRD 29673
17-03-17 22:22:02.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:02.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:02.768 -07 000000448 INF: FPGA: Recv ZSGSRD 29672
17-03-17 22:22:02.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:02.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:02.778 -07 000000576 INF: FPGA: Recv ZSGSRD 29664
17-03-17 22:22:02.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:02.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:02.788 -07 000000448 INF: FPGA: Recv ZSGSRD 29675
17-03-17 22:22:02.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:02.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:02.798 -07 000000576 INF: FPGA: Recv ZSGSRD 29673
17-03-17 22:22:02.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:02.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:02.808 -07 000000448 INF: FPGA: Recv ZSGSRD 29673
17-03-17 22:22:02.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:02.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:02.818 -07 000000424 INF: FPGA: Recv ZSGSRD 29672
17-03-17 22:22:02.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:02.828 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:22:02.828 -07 000000448 INF: FPGA: Recv ZPIEZORD 25366
17-03-17 22:22:02.838 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:02.838 -07 000000610 INF: Z Motor: Piezo is near 34.2 V (nominally 0 to 100 V), expect near 43.6 V, since DAC is at 4.364 V. Piezo Error = -9.5 V.
17-03-17 22:22:02.838 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.9 um, Read 10 ADC samples: Avg = 29672 (-130.2 uncal um), Error = 0.8 uncal um, Median = 29673 (-130.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29664 (-130.1 uncal um), Max = 29677 (-130.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 22:22:02.838 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29672, posNoise = 5, negNoise = 8
17-03-17 22:22:02.838 -07 000000610 INF: Z Motor: After move to -0.130932, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:22:02.838 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-17 22:22:02.838 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:22:02.838 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:22:02.838 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:22:02.838 -07 000000482 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:22:02.838 -07 000000623 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:22:02.838 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:22:02.838 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:22:02.838 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:22:02.838 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:22:02.838 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:22:02.838 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:22:02.838 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:22:02.848 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 22:22:02.848 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:22:02.848 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:22:02.848 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:22:02.858 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 22:22:02.858 -07 000000623 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 22:22:02.858 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 22:22:02.858 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 22:22:02.858 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 450 450 216 216 28779 150\n [Camera]
17-03-17 22:22:03.058 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:22:03.508 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 642
17-03-17 22:22:03.508 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 642
17-03-17 22:22:03.508 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:22:03.518 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 642
17-03-17 22:22:03.518 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 642
17-03-17 22:22:03.518 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:22:03.518 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:22:03.518 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-17 22:22:03.528 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:22:03.528 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-17 22:22:03.708 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28779 835
17-03-17 22:22:03.858 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP turning grn on 985
17-03-17 22:22:03.918 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 395 ms.
17-03-17 22:22:03.918 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 22:22:03.918 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:22:03.918 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 395 ms.
17-03-17 22:22:03.918 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 22:22:03.918 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:22:03.918 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:22:03.918 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-17 22:22:03.928 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:22:03.928 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-17 22:22:04.068 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1201
17-03-17 22:22:04.068 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1201
17-03-17 22:22:04.068 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:22:04.068 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:22:04.068 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1441468064, 0x0, 391868352) start.
17-03-17 22:22:04.478 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1441468064, 0x0, 391868352) end. Duration was 406 ms.
17-03-17 22:22:04.478 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-17 22:22:04.478 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:22:04.478 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 22:22:04.478 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-17 22:22:04.488 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1201
17-03-17 22:22:04.488 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP 1393
17-03-17 22:22:04.488 -07 000000424 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:22:04.488 -07 000000610 INF: FPGA: 'CAMDBLSNAP 450 450 216 216 28779 150' command took 2 ms to send, 1619 ms to get response, and 1630 ms overall
17-03-17 22:22:04.488 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1201
17-03-17 22:22:04.498 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:22:04.498 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:22:04.498 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1476890328, 0x0, 418435064) start.
17-03-17 22:22:04.588 -07 000000610 INF: Skipping AutoFocus in Tile 9: adopting Best-Z from the cache: -0.131311
17-03-17 22:22:04.588 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.13131 mm
17-03-17 22:22:04.588 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:22:04.898 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1476890328, 0x0, 418435064) end. Duration was 407 ms.
17-03-17 22:22:04.898 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-17 22:22:04.898 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:22:04.908 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:22:04.908 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 417 ms.
17-03-17 22:22:04.918 -07 000000424 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-17 22:22:04.918 -07 000000424 INF: Y Motor: Moving to 66.5526 mm, started at 65.7148 mm, delta = 0.8378 mm
17-03-17 22:22:04.918 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:22:05.728 -07 000000382 INF: FPGA: Recv YRDPOS 134584
17-03-17 22:22:05.728 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 800 ms to get response, and 803 ms overall
17-03-17 22:22:05.728 -07 000000424 INF: Y Motor: Encoder = 134584 = motor step 105143.8 = 65.7148 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:22:05.728 -07 000000424 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:22:05.838 -07 000000424 INF: Y Motor: Moving 1340 steps-16
17-03-17 22:22:05.838 -07 000000424 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:22:05.838 -07 000000382 INF: Z Motor: Entering MoveAbsStepped (DAC = 28685, sync = True, waitForSettling = False)
17-03-17 22:22:05.838 -07 000000382 INF: Z Motor: Moving to -0.131312 mm, started at -0.130943 mm, distance = -0.37 um
17-03-17 22:22:05.848 -07 000000382 INF: FPGA: Xmit ZDACW 28685\n [Z Motor]
17-03-17 22:22:06.728 -07 000000480 INF: FPGA: Recv ZDACW
17-03-17 22:22:06.728 -07 000000480 INF: FPGA: Recv YMVTILE
17-03-17 22:22:06.728 -07 000000382 INF: FPGA: 'ZDACW 28685' command took 0 ms to send, 870 ms to get response, and 882 ms overall
17-03-17 22:22:06.728 -07 000000382 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:22:06.728 -07 000000424 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 880 ms to get response, and 883 ms overall
17-03-17 22:22:06.728 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 62, FrontChillerTemperature: 3.956714,
17-03-17 22:22:06.728 -07 000000480 INF: FPGA: Recv ZDACR 28685
17-03-17 22:22:06.738 -07 000000382 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:06.738 -07 000000382 INF: Z Motor: MoveAbsStepped took 893 ms (did NOT wait for settling yet))
17-03-17 22:22:06.768 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:22:07.728 -07 000000480 INF: FPGA: Recv YRDPOS 136274
17-03-17 22:22:07.728 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:22:07.728 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 950 ms to get response, and 956 ms overall
17-03-17 22:22:07.728 -07 000000424 INF: Y Motor: Encoder = 136274 = motor step 106464.1 = 66.5400 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:22:07.728 -07 000000424 INF: Y Motor: Position error before settling (table move) = -26 encoder counts (-0.013 mm)
17-03-17 22:22:07.728 -07 000000424 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 883 ms, distance = 0.838 mm, average velocity = 0.949 mm/sec
17-03-17 22:22:07.728 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 61. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=992, R2=1018, Total=2010. Warn if over 250 bubbles per interval.
17-03-17 22:22:08.678 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:22:08.678 -07 000000438 INF: FPGA: Recv YRDPOS 136274
17-03-17 22:22:08.688 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:22:08.688 -07 000000424 INF: Y Motor: Encoder = 136274 = motor step 106464.1 = 66.5400 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:22:08.708 -07 000000424 INF: Y Motor: After move to 66.552605, error = -0.012566, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:22:08.708 -07 000000424 INF: Y Motor: Position error after settling (table move) = -26 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:22:08.708 -07 000000424 INF: Y Motor: Moved to 66.5400 after 3788 ms (table move)
17-03-17 22:22:08.708 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.131312 mm (DAC = 28685)
17-03-17 22:22:08.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:08.718 -07 000000618 INF: FPGA: Recv ZSGSRD 29730
17-03-17 22:22:08.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 22:22:08.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:08.718 -07 000000480 INF: FPGA: Recv ZSGSRD 29727
17-03-17 22:22:08.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:22:08.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:08.728 -07 000000618 INF: FPGA: Recv ZSGSRD 29729
17-03-17 22:22:08.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:08.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:08.738 -07 000000502 INF: FPGA: Recv ZSGSRD 29730
17-03-17 22:22:08.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:08.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:08.748 -07 000000618 INF: FPGA: Recv ZSGSRD 29730
17-03-17 22:22:08.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:08.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:08.758 -07 000000462 INF: FPGA: Recv ZSGSRD 29729
17-03-17 22:22:08.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:08.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:08.768 -07 000000438 INF: FPGA: Recv ZSGSRD 29728
17-03-17 22:22:08.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:08.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:08.778 -07 000000424 INF: FPGA: Recv ZSGSRD 29732
17-03-17 22:22:08.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:08.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:08.788 -07 000000438 INF: FPGA: Recv ZSGSRD 29729
17-03-17 22:22:08.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:08.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:08.798 -07 000000462 INF: FPGA: Recv ZSGSRD 29728
17-03-17 22:22:08.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:08.808 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:22:08.808 -07 000000618 INF: FPGA: Recv ZPIEZORD 25471
17-03-17 22:22:08.818 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:08.818 -07 000000610 INF: Z Motor: Piezo is near 34.4 V (nominally 0 to 100 V), expect near 43.8 V, since DAC is at 4.377 V. Piezo Error = -9.4 V.
17-03-17 22:22:08.818 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.3 um, Read 10 ADC samples: Avg = 29729 (-130.5 uncal um), Error = 0.8 uncal um, Median = 29729 (-130.5 uncal um), StdDev = 1 (0.0 uncal um), Range = 5 (0.0 uncal um), Min = 29727 (-130.5 uncal um), Max = 29732 (-130.5 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 2 (0.0 uncal um)
17-03-17 22:22:08.818 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29729, posNoise = 3, negNoise = 2
17-03-17 22:22:08.818 -07 000000610 INF: Z Motor: After move to -0.131312, error = 0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:22:08.818 -07 000000610 INF: Z Motor: Settle wait time = 2870 ms, measure time = 102 ms (allowed 150 ms), total time = 2972 ms
17-03-17 22:22:08.818 -07 000000610 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 22:22:08.868 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4277 ms
17-03-17 22:22:08.868 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:22:08.868 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.5400390625, Z-position -0.131308754773546. ----------
17-03-17 22:22:08.868 -07 000000610 INF: Cycle	62	Tile	9	Exposure Settings		A	450	G	216	T	216	C	450
17-03-17 22:22:08.868 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28508, sync = True, waitForSettling = True)
17-03-17 22:22:08.868 -07 000000610 INF: Z Motor: Moving to -0.130501 mm, started at -0.131309 mm, distance = 0.81 um
17-03-17 22:22:08.868 -07 000000610 INF: FPGA: Xmit ZDACW 28508\n [Z Motor]
17-03-17 22:22:08.868 -07 000000561 INF: FPGA: Recv ZDACW
17-03-17 22:22:08.878 -07 000000610 INF: FPGA: 'ZDACW 28508' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 22:22:08.878 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:22:08.878 -07 000000438 INF: FPGA: Recv ZDACR 28508
17-03-17 22:22:08.888 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:08.888 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:22:09.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:09.038 -07 000000618 INF: FPGA: Recv ZSGSRD 29603
17-03-17 22:22:09.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:09.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:09.048 -07 000000480 INF: FPGA: Recv ZSGSRD 29604
17-03-17 22:22:09.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:09.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:09.058 -07 000000438 INF: FPGA: Recv ZSGSRD 29608
17-03-17 22:22:09.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:09.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:09.068 -07 000000480 INF: FPGA: Recv ZSGSRD 29601
17-03-17 22:22:09.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:09.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:09.078 -07 000000618 INF: FPGA: Recv ZSGSRD 29603
17-03-17 22:22:09.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:09.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:09.088 -07 000000502 INF: FPGA: Recv ZSGSRD 29608
17-03-17 22:22:09.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:09.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:09.098 -07 000000561 INF: FPGA: Recv ZSGSRD 29607
17-03-17 22:22:09.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:09.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:09.108 -07 000000438 INF: FPGA: Recv ZSGSRD 29604
17-03-17 22:22:09.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:09.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:09.118 -07 000000462 INF: FPGA: Recv ZSGSRD 29603
17-03-17 22:22:09.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:09.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:09.128 -07 000000424 INF: FPGA: Recv ZSGSRD 29603
17-03-17 22:22:09.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:09.138 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:22:09.138 -07 000000462 INF: FPGA: Recv ZPIEZORD 25319
17-03-17 22:22:09.148 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:09.148 -07 000000610 INF: Z Motor: Piezo is near 34.1 V (nominally 0 to 100 V), expect near 43.5 V, since DAC is at 4.350 V. Piezo Error = -9.4 V.
17-03-17 22:22:09.148 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.5 um, Read 10 ADC samples: Avg = 29604 (-129.7 uncal um), Error = 0.8 uncal um, Median = 29604 (-129.7 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 29601 (-129.7 uncal um), Max = 29608 (-129.8 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 22:22:09.148 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29604, posNoise = 4, negNoise = 3
17-03-17 22:22:09.148 -07 000000610 INF: Z Motor: After move to -0.130501, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:22:09.148 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 22:22:09.148 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:22:09.148 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:22:09.148 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:22:09.148 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:22:09.148 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:22:09.148 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:22:09.148 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:22:09.148 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:22:09.148 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:22:09.148 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:22:09.148 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:22:09.148 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:22:09.158 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 22:22:09.158 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:22:09.158 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:22:09.158 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:22:09.168 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 22:22:09.168 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 22:22:09.168 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 22:22:09.168 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 22:22:09.168 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 450 450 216 216 28685 150\n [Camera]
17-03-17 22:22:09.368 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:22:09.818 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 642
17-03-17 22:22:09.818 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 642
17-03-17 22:22:09.828 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:22:09.828 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 642
17-03-17 22:22:09.828 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 642
17-03-17 22:22:09.828 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:22:09.828 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 22:22:09.828 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:22:09.828 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:22:09.828 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) start.
17-03-17 22:22:10.018 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28685 835
17-03-17 22:22:10.168 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning grn on 985
17-03-17 22:22:10.218 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) end. Duration was 390 ms.
17-03-17 22:22:10.218 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 22:22:10.218 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:22:10.228 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:22:10.228 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 395 ms.
17-03-17 22:22:10.228 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 22:22:10.228 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:22:10.228 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:22:10.228 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 22:22:10.228 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 22:22:10.378 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1201
17-03-17 22:22:10.378 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1201
17-03-17 22:22:10.378 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:22:10.378 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:22:10.378 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1476890328, 0x0, 391868352) start.
17-03-17 22:22:10.388 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1201
17-03-17 22:22:10.388 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1201
17-03-17 22:22:10.388 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:22:10.388 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:22:10.388 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-17 22:22:10.568 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP 1394
17-03-17 22:22:10.578 -07 000000618 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:22:10.578 -07 000000610 INF: FPGA: 'CAMDBLSNAP 450 450 216 216 28685 150' command took 2 ms to send, 1390 ms to get response, and 1400 ms overall
17-03-17 22:22:10.578 -07 000000610 INF: Skipping AutoFocus in Tile 10: adopting Best-Z from the cache: -0.131224
17-03-17 22:22:10.578 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.13122 mm
17-03-17 22:22:10.578 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:22:10.578 -07 000000561 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-17 22:22:10.578 -07 000000561 INF: Y Motor: Moving to 67.3826 mm, started at 66.5400 mm, delta = 0.8426 mm
17-03-17 22:22:10.578 -07 000000438 INF: Z Motor: Entering MoveAbsStepped (DAC = 28666, sync = True, waitForSettling = False)
17-03-17 22:22:10.578 -07 000000438 INF: Z Motor: Moving to -0.131225 mm, started at -0.130506 mm, distance = -0.72 um
17-03-17 22:22:10.578 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:22:10.578 -07 000000618 INF: FPGA: Recv YRDPOS 136274
17-03-17 22:22:10.588 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 22:22:10.588 -07 000000561 INF: Y Motor: Encoder = 136274 = motor step 106464.1 = 66.5400 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:22:10.588 -07 000000561 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:22:10.588 -07 000000561 INF: Y Motor: Moving 1348 steps-26
17-03-17 22:22:10.588 -07 000000438 INF: FPGA: Xmit ZDACW 28666\n [Z Motor]
17-03-17 22:22:10.588 -07 000000569 INF: FPGA: Recv ZDACW
17-03-17 22:22:10.598 -07 000000438 INF: FPGA: 'ZDACW 28666' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 22:22:10.598 -07 000000561 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:22:10.608 -07 000000438 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:22:10.608 -07 000000424 INF: FPGA: Recv ZDACR 28666
17-03-17 22:22:10.618 -07 000000438 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:22:10.618 -07 000000438 INF: Z Motor: MoveAbsStepped took 35 ms (did NOT wait for settling yet))
17-03-17 22:22:10.788 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1476890328, 0x0, 391868352) end. Duration was 404 ms.
17-03-17 22:22:10.788 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 22:22:10.788 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:22:10.788 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 403 ms.
17-03-17 22:22:10.788 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-17 22:22:10.788 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:22:10.788 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:22:10.788 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-17 22:22:10.798 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:22:10.798 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-17 22:22:10.968 -07 000000424 INF: FPGA: Recv YMVTILE
17-03-17 22:22:10.968 -07 000000561 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 386 ms overall
17-03-17 22:22:11.008 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:22:11.018 -07 000000569 INF: FPGA: Recv YRDPOS 137979
17-03-17 22:22:11.018 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 22:22:11.018 -07 000000561 INF: Y Motor: Encoder = 137979 = motor step 107796.1 = 67.3726 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:22:11.018 -07 000000561 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-17 22:22:11.018 -07 000000561 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 386 ms, distance = 0.843 mm, average velocity = 2.183 mm/sec
17-03-17 22:22:11.968 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:22:11.968 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:22:11.968 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 61. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=992, R2=1018, Total=2010. Warn if over 250 bubbles per interval.
17-03-17 22:22:11.968 -07 000000569 INF: FPGA: Recv YRDPOS 137979
17-03-17 22:22:11.978 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:22:11.978 -07 000000561 INF: Y Motor: Encoder = 137979 = motor step 107796.1 = 67.3726 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:22:11.998 -07 000000561 INF: Y Motor: After move to 67.382607, error = -0.010048, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:22:11.998 -07 000000561 INF: Y Motor: Position error after settling (table move) = -21 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:22:11.998 -07 000000561 INF: Y Motor: Moved to 67.3726 after 1421 ms (table move)
17-03-17 22:22:11.998 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.131225 mm (DAC = 28666)
17-03-17 22:22:11.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:12.008 -07 000000569 INF: FPGA: Recv ZSGSRD 29713
17-03-17 22:22:12.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 22:22:12.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:12.008 -07 000000561 INF: FPGA: Recv ZSGSRD 29716
17-03-17 22:22:12.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:22:12.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:12.018 -07 000000569 INF: FPGA: Recv ZSGSRD 29713
17-03-17 22:22:12.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:12.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:12.028 -07 000000569 INF: FPGA: Recv ZSGSRD 29717
17-03-17 22:22:12.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:12.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:12.038 -07 000000561 INF: FPGA: Recv ZSGSRD 29720
17-03-17 22:22:12.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:12.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:12.048 -07 000000569 INF: FPGA: Recv ZSGSRD 29717
17-03-17 22:22:12.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:12.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:12.058 -07 000000569 INF: FPGA: Recv ZSGSRD 29718
17-03-17 22:22:12.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:12.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:12.068 -07 000000569 INF: FPGA: Recv ZSGSRD 29711
17-03-17 22:22:12.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:12.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:12.078 -07 000000569 INF: FPGA: Recv ZSGSRD 29708
17-03-17 22:22:12.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:12.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:12.088 -07 000000569 INF: FPGA: Recv ZSGSRD 29715
17-03-17 22:22:12.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:12.098 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:22:12.098 -07 000000569 INF: FPGA: Recv ZPIEZORD 25465
17-03-17 22:22:12.108 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:12.108 -07 000000610 INF: Z Motor: Piezo is near 34.4 V (nominally 0 to 100 V), expect near 43.7 V, since DAC is at 4.374 V. Piezo Error = -9.3 V.
17-03-17 22:22:12.108 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.2 um, Read 10 ADC samples: Avg = 29715 (-130.4 uncal um), Error = 0.8 uncal um, Median = 29716 (-130.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29708 (-130.4 uncal um), Max = 29720 (-130.5 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 22:22:12.108 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29715, posNoise = 5, negNoise = 7
17-03-17 22:22:12.108 -07 000000610 INF: Z Motor: After move to -0.131225, error = 0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:22:12.108 -07 000000610 INF: Z Motor: Settle wait time = 1424 ms, measure time = 102 ms (allowed 150 ms), total time = 1526 ms
17-03-17 22:22:12.108 -07 000000610 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 22:22:12.158 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1577 ms
17-03-17 22:22:12.158 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:22:12.158 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.37255859375, Z-position -0.131218815803562. ----------
17-03-17 22:22:12.158 -07 000000610 INF: Cycle	62	Tile	10	Exposure Settings		A	450	G	216	T	216	C	450
17-03-17 22:22:12.158 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28489, sync = True, waitForSettling = True)
17-03-17 22:22:12.158 -07 000000610 INF: Z Motor: Moving to -0.130414 mm, started at -0.131219 mm, distance = 0.80 um
17-03-17 22:22:12.158 -07 000000610 INF: FPGA: Xmit ZDACW 28489\n [Z Motor]
17-03-17 22:22:12.158 -07 000000569 INF: FPGA: Recv ZDACW
17-03-17 22:22:12.168 -07 000000610 INF: FPGA: 'ZDACW 28489' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:22:12.168 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:22:12.168 -07 000000569 INF: FPGA: Recv ZDACR 28489
17-03-17 22:22:12.178 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:12.178 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:22:12.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:12.328 -07 000000569 INF: FPGA: Recv ZSGSRD 29592
17-03-17 22:22:12.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:22:12.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:12.338 -07 000000569 INF: FPGA: Recv ZSGSRD 29596
17-03-17 22:22:12.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:12.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:12.348 -07 000000501 INF: FPGA: Recv ZSGSRD 29586
17-03-17 22:22:12.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:12.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:12.358 -07 000000448 INF: FPGA: Recv ZSGSRD 29591
17-03-17 22:22:12.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:12.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:12.368 -07 000000501 INF: FPGA: Recv ZSGSRD 29591
17-03-17 22:22:12.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:12.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:12.378 -07 000000448 INF: FPGA: Recv ZSGSRD 29591
17-03-17 22:22:12.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:12.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:12.388 -07 000000569 INF: FPGA: Recv ZSGSRD 29593
17-03-17 22:22:12.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:12.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:12.398 -07 000000482 INF: FPGA: Recv ZSGSRD 29583
17-03-17 22:22:12.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:12.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:12.408 -07 000000482 INF: FPGA: Recv ZSGSRD 29586
17-03-17 22:22:12.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:12.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:12.418 -07 000000501 INF: FPGA: Recv ZSGSRD 29597
17-03-17 22:22:12.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:12.428 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:22:12.428 -07 000000482 INF: FPGA: Recv ZPIEZORD 25308
17-03-17 22:22:12.438 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:12.438 -07 000000610 INF: Z Motor: Piezo is near 34.1 V (nominally 0 to 100 V), expect near 43.5 V, since DAC is at 4.347 V. Piezo Error = -9.4 V.
17-03-17 22:22:12.438 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.4 um, Read 10 ADC samples: Avg = 29591 (-129.6 uncal um), Error = 0.8 uncal um, Median = 29591 (-129.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 29583 (-129.6 uncal um), Max = 29597 (-129.7 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 22:22:12.438 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29591, posNoise = 6, negNoise = 8
17-03-17 22:22:12.438 -07 000000610 INF: Z Motor: After move to -0.130414, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:22:12.438 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-17 22:22:12.438 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:22:12.438 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:22:12.438 -07 000000448 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:22:12.438 -07 000000482 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:22:12.438 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:22:12.438 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:22:12.438 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:22:12.438 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:22:12.438 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:22:12.438 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:22:12.438 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:22:12.438 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:22:12.448 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:22:12.448 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:22:12.448 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:22:12.448 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:22:12.458 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 12 ms.
17-03-17 22:22:12.458 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms.
17-03-17 22:22:12.458 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 12 ms.
17-03-17 22:22:12.458 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 18 ms.
17-03-17 22:22:12.458 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 450 450 216 216 28666 150\n [Camera]
17-03-17 22:22:12.658 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:22:13.098 -07 000000551 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 62, FrontChillerTemperature: 3.997626,
17-03-17 22:22:13.108 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 642
17-03-17 22:22:13.108 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 642
17-03-17 22:22:13.108 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:22:13.108 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:22:13.108 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start.
17-03-17 22:22:13.118 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 642
17-03-17 22:22:13.118 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 642
17-03-17 22:22:13.118 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:22:13.228 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:22:13.228 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 22:22:13.308 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28666 835
17-03-17 22:22:13.448 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning grn on 985
17-03-17 22:22:13.498 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 391 ms.
17-03-17 22:22:13.498 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 22:22:13.498 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:22:13.508 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:22:13.508 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 22:22:13.618 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 391 ms.
17-03-17 22:22:13.618 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 22:22:13.618 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:22:13.628 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 22:22:13.628 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 515 ms.
17-03-17 22:22:13.668 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1201
17-03-17 22:22:13.668 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1201
17-03-17 22:22:13.668 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:22:13.668 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1201
17-03-17 22:22:13.668 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1201
17-03-17 22:22:13.678 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:22:13.678 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:22:13.678 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) start.
17-03-17 22:22:13.678 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:22:13.678 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-17 22:22:13.858 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP 1394
17-03-17 22:22:13.858 -07 000000551 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:22:13.858 -07 000000610 INF: FPGA: 'CAMDBLSNAP 450 450 216 216 28666 150' command took 2 ms to send, 1398 ms to get response, and 1401 ms overall
17-03-17 22:22:13.868 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 22:22:13.868 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.37255859375, Z-Position -0.130422213497984. ------
17-03-17 22:22:13.868 -07 000000438 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:22:13.868 -07 000000501 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.13684 mm
17-03-17 22:22:13.868 -07 000000501 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:22:13.868 -07 000000623 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:22:13.868 -07 000000618 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-17 22:22:13.868 -07 000000618 INF: Y Motor: Moving to 68.2126 mm, started at 67.3726 mm, delta = 0.8400 mm
17-03-17 22:22:13.868 -07 000000551 INF: Z Motor: Entering MoveAbsStepped (DAC = 29894, sync = True, waitForSettling = False)
17-03-17 22:22:13.868 -07 000000551 INF: Z Motor: Moving to -0.136846 mm, started at -0.130422 mm, distance = -6.42 um
17-03-17 22:22:13.878 -07 000000438 INF: FPGA: 'FOCMRRCUR 80' command took 1 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:22:13.878 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:22:13.878 -07 000000623 INF: FPGA: Recv YRDPOS 137979
17-03-17 22:22:13.888 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:22:13.888 -07 000000551 INF: FPGA: Xmit ZDACW 29894\n [Z Motor]
17-03-17 22:22:13.888 -07 000000618 INF: Y Motor: Encoder = 137979 = motor step 107796.1 = 67.3726 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:22:13.888 -07 000000618 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:22:13.888 -07 000000618 INF: Y Motor: Moving 1344 steps-21
17-03-17 22:22:13.888 -07 000000382 INF: FPGA: Recv ZDACW
17-03-17 22:22:13.898 -07 000000551 INF: FPGA: 'ZDACW 29894' command took 0 ms to send, 0 ms to get response, and 20 ms overall
17-03-17 22:22:13.898 -07 000000438 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:22:13.908 -07 000000618 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:22:13.918 -07 000000551 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:22:14.078 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) end. Duration was 400 ms.
17-03-17 22:22:14.078 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 22:22:14.078 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:22:14.078 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 397 ms.
17-03-17 22:22:14.078 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 22:22:14.078 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:22:14.078 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:22:14.078 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:22:14.078 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-17 22:22:14.088 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-17 22:22:14.918 -07 000000382 INF: FPGA: Recv ZDACR 29894
17-03-17 22:22:14.918 -07 000000382 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:22:14.918 -07 000000382 INF: FPGA: Recv YMVTILE
17-03-17 22:22:14.918 -07 000000618 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 1001 ms to get response, and 1030 ms overall
17-03-17 22:22:14.918 -07 000000438 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 1011 ms to get response, and 1040 ms overall
17-03-17 22:22:14.918 -07 000000551 INF: FPGA: 'ZDACR' command took 0 ms to send, 990 ms to get response, and 1020 ms overall
17-03-17 22:22:14.918 -07 000000551 INF: Z Motor: MoveAbsStepped took 1042 ms (did NOT wait for settling yet))
17-03-17 22:22:14.958 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:22:14.958 -07 000000458 INF: FPGA: Recv YRDPOS 139686
17-03-17 22:22:14.968 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:22:14.968 -07 000000618 INF: Y Motor: Encoder = 139686 = motor step 109129.7 = 68.2061 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:22:14.968 -07 000000618 INF: Y Motor: Position error before settling (table move) = -13 encoder counts (-0.006 mm)
17-03-17 22:22:14.968 -07 000000618 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 1030 ms, distance = 0.840 mm, average velocity = 0.816 mm/sec
17-03-17 22:22:15.918 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:22:15.918 -07 000000458 INF: FPGA: Recv YRDPOS 139686
17-03-17 22:22:15.928 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:22:15.928 -07 000000618 INF: Y Motor: Encoder = 139686 = motor step 109129.7 = 68.2061 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:22:15.948 -07 000000618 INF: Y Motor: After move to 68.212608, error = -0.006554, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:22:15.948 -07 000000618 INF: Y Motor: Position error after settling (table move) = -13 encoder counts (-0.006 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:22:15.948 -07 000000618 INF: Y Motor: Moved to 68.2061 after 2072 ms (table move)
17-03-17 22:22:15.948 -07 000000501 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136846 mm (DAC = 29894)
17-03-17 22:22:15.948 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:15.948 -07 000000424 INF: FPGA: Recv ZSGSRD 30592
17-03-17 22:22:15.958 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 22:22:15.958 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:15.958 -07 000000382 INF: FPGA: Recv ZSGSRD 30594
17-03-17 22:22:15.968 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:15.968 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:15.968 -07 000000576 INF: FPGA: Recv ZSGSRD 30595
17-03-17 22:22:15.978 -07 000000501 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:15.978 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:15.978 -07 000000618 INF: FPGA: Recv ZSGSRD 30594
17-03-17 22:22:15.988 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:15.988 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:15.988 -07 000000424 INF: FPGA: Recv ZSGSRD 30592
17-03-17 22:22:15.998 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:15.998 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:15.998 -07 000000618 INF: FPGA: Recv ZSGSRD 30591
17-03-17 22:22:16.008 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:16.008 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:16.008 -07 000000424 INF: FPGA: Recv ZSGSRD 30594
17-03-17 22:22:16.018 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:16.018 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:16.018 -07 000000382 INF: FPGA: Recv ZSGSRD 30590
17-03-17 22:22:16.028 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:16.028 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:16.028 -07 000000424 INF: FPGA: Recv ZSGSRD 30592
17-03-17 22:22:16.038 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:16.038 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:16.038 -07 000000382 INF: FPGA: Recv ZSGSRD 30595
17-03-17 22:22:16.048 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:16.048 -07 000000501 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:22:16.048 -07 000000438 INF: FPGA: Recv ZPIEZORD 26577
17-03-17 22:22:16.058 -07 000000501 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:16.058 -07 000000501 INF: Z Motor: Piezo is near 36.8 V (nominally 0 to 100 V), expect near 45.6 V, since DAC is at 4.562 V. Piezo Error = -8.8 V.
17-03-17 22:22:16.058 -07 000000501 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.8 um, Read 10 ADC samples: Avg = 30593 (-136.1 uncal um), Error = 0.8 uncal um, Median = 30593 (-136.1 uncal um), StdDev = 2 (0.0 uncal um), Range = 5 (0.0 uncal um), Min = 30590 (-136.0 uncal um), Max = 30595 (-136.1 uncal um), Pos Noise = 2 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 22:22:16.058 -07 000000501 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30593, posNoise = 2, negNoise = 3
17-03-17 22:22:16.058 -07 000000501 INF: Z Motor: After move to -0.136846, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:22:16.058 -07 000000501 INF: Z Motor: Settle wait time = 2075 ms, measure time = 106 ms (allowed 150 ms), total time = 2181 ms
17-03-17 22:22:16.058 -07 000000501 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 22:22:16.108 -07 000000501 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2235 ms
17-03-17 22:22:16.108 -07 000000501 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:22:16.108 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:22:16.108 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:22:16.108 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:22:16.108 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:22:16.108 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:22:16.108 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:22:16.108 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 22:22:16.108 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:22:16.118 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:22:16.118 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:22:16.118 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 22:22:16.118 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-17 22:22:16.128 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:22:16.168 -07 000000424 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:22:16.368 -07 000000618 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:22:16.368 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:22:16.368 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:22:16.368 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 22:22:16.408 -07 000000438 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:22:16.408 -07 000000576 INF: FPGA: Recv CAMSNAP
17-03-17 22:22:16.408 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 284 ms overall
17-03-17 22:22:16.488 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 22:22:16.488 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:22:16.488 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:22:16.488 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 22:22:16.508 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:22:16.508 -07 000000382 INF: Autofocus start
17-03-17 22:22:16.508 -07 000000382 INF: MeasureProfile start
17-03-17 22:22:16.508 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:22:16.518 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:22:16.518 -07 000000618 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:22:16.518 -07 000000382 INF: MeasureProfile done
17-03-17 22:22:16.518 -07 000000382 INF: X=75  Z correction [um]=0.3368308
17-03-17 22:22:16.518 -07 000000382 INF: Autofocus finished
17-03-17 22:22:16.718 -07 000000501 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:22:16.718 -07 000000618 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:22:16.718 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.2060546875, Z-position -0.136859274064028. ----------
17-03-17 22:22:16.728 -07 000000610 INF: Cycle	62	Tile	11	Exposure Settings		A	450	G	216	T	216	C	450
17-03-17 22:22:16.728 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28480, sync = True, waitForSettling = True)
17-03-17 22:22:16.728 -07 000000610 INF: Z Motor: Moving to -0.130373 mm, started at -0.136859 mm, distance = 6.49 um
17-03-17 22:22:16.728 -07 000000610 INF: FPGA: Xmit ZDACW 28480\n [Z Motor]
17-03-17 22:22:16.728 -07 000000424 INF: FPGA: Recv ZDACW
17-03-17 22:22:16.738 -07 000000610 INF: FPGA: 'ZDACW 28480' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 22:22:16.738 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:22:16.738 -07 000000576 INF: FPGA: Recv ZDACR 28480
17-03-17 22:22:16.748 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:16.748 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:22:16.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:16.898 -07 000000501 INF: FPGA: Recv ZSGSRD 29585
17-03-17 22:22:16.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:22:16.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:16.908 -07 000000551 INF: FPGA: Recv ZSGSRD 29582
17-03-17 22:22:16.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:16.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:16.918 -07 000000382 INF: FPGA: Recv ZSGSRD 29586
17-03-17 22:22:16.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:16.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:16.928 -07 000000551 INF: FPGA: Recv ZSGSRD 29580
17-03-17 22:22:16.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:16.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:16.938 -07 000000576 INF: FPGA: Recv ZSGSRD 29580
17-03-17 22:22:16.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:16.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:16.948 -07 000000438 INF: FPGA: Recv ZSGSRD 29585
17-03-17 22:22:16.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:16.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:16.958 -07 000000551 INF: FPGA: Recv ZSGSRD 29580
17-03-17 22:22:16.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:16.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:16.968 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:22:16.968 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 61. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=992, R2=1018, Total=2010. Warn if over 250 bubbles per interval.
17-03-17 22:22:16.968 -07 000000438 INF: FPGA: Recv ZSGSRD 29588
17-03-17 22:22:16.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:16.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:16.978 -07 000000424 INF: FPGA: Recv ZSGSRD 29583
17-03-17 22:22:16.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:16.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:16.988 -07 000000438 INF: FPGA: Recv ZSGSRD 29587
17-03-17 22:22:16.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:16.998 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:22:16.998 -07 000000424 INF: FPGA: Recv ZPIEZORD 25258
17-03-17 22:22:17.008 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:17.008 -07 000000610 INF: Z Motor: Piezo is near 34.0 V (nominally 0 to 100 V), expect near 43.5 V, since DAC is at 4.346 V. Piezo Error = -9.5 V.
17-03-17 22:22:17.008 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.4 um, Read 10 ADC samples: Avg = 29584 (-129.6 uncal um), Error = 0.8 uncal um, Median = 29584 (-129.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29580 (-129.6 uncal um), Max = 29588 (-129.6 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 22:22:17.008 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29584, posNoise = 4, negNoise = 4
17-03-17 22:22:17.008 -07 000000610 INF: Z Motor: After move to -0.130373, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:22:17.008 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 22:22:17.008 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:22:17.008 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:22:17.008 -07 000000551 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:22:17.008 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:22:17.008 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:22:17.008 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:22:17.008 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:22:17.008 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:22:17.008 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:22:17.008 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:22:17.008 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:22:17.008 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:22:17.018 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:22:17.018 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:22:17.018 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:22:17.018 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:22:17.028 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 22:22:17.028 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 22:22:17.028 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 22:22:17.028 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 22:22:17.028 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 450 450 216 216 28656 150\n [Camera]
17-03-17 22:22:17.228 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:22:17.678 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 642
17-03-17 22:22:17.678 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 642
17-03-17 22:22:17.678 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:22:17.678 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:22:17.678 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1476890328, 0x0, 391868352) start.
17-03-17 22:22:17.678 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 642
17-03-17 22:22:17.678 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 642
17-03-17 22:22:17.678 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:22:17.678 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:22:17.678 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) start.
17-03-17 22:22:17.868 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28656 835
17-03-17 22:22:18.018 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning grn on 985
17-03-17 22:22:18.068 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1476890328, 0x0, 391868352) end. Duration was 394 ms.
17-03-17 22:22:18.068 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 22:22:18.068 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:22:18.078 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) end. Duration was 394 ms.
17-03-17 22:22:18.078 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 22:22:18.078 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:22:18.078 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:22:18.078 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 22:22:18.078 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:22:18.088 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-17 22:22:18.238 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1201
17-03-17 22:22:18.238 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1201
17-03-17 22:22:18.238 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:22:18.238 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:22:18.238 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 22:22:18.238 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1201
17-03-17 22:22:18.238 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1201
17-03-17 22:22:18.238 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:22:18.238 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:22:18.238 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 22:22:18.428 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP 1396
17-03-17 22:22:18.428 -07 000000438 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:22:18.428 -07 000000610 INF: FPGA: 'CAMDBLSNAP 450 450 216 216 28656 150' command took 2 ms to send, 1396 ms to get response, and 1403 ms overall
17-03-17 22:22:18.428 -07 000000610 INF: Skipping AutoFocus in Tile 12: adopting Best-Z from the cache: -0.131144
17-03-17 22:22:18.428 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.13114 mm
17-03-17 22:22:18.428 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:22:18.438 -07 000000459 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-17 22:22:18.438 -07 000000459 INF: Y Motor: Moving to 69.0426 mm, started at 68.2061 mm, delta = 0.8366 mm
17-03-17 22:22:18.438 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:22:18.438 -07 000000382 INF: Z Motor: Entering MoveAbsStepped (DAC = 28648, sync = True, waitForSettling = False)
17-03-17 22:22:18.438 -07 000000382 INF: Z Motor: Moving to -0.131142 mm, started at -0.130377 mm, distance = -0.76 um
17-03-17 22:22:18.438 -07 000000424 INF: FPGA: Recv YRDPOS 139686
17-03-17 22:22:18.448 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:22:18.448 -07 000000459 INF: Y Motor: Encoder = 139686 = motor step 109129.7 = 68.2061 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:22:18.448 -07 000000459 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:22:18.448 -07 000000459 INF: Y Motor: Moving 1338 steps-13
17-03-17 22:22:18.458 -07 000000382 INF: FPGA: Xmit ZDACW 28648\n [Z Motor]
17-03-17 22:22:18.458 -07 000000438 INF: FPGA: Recv ZDACW
17-03-17 22:22:18.468 -07 000000382 INF: FPGA: 'ZDACW 28648' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-17 22:22:18.468 -07 000000459 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:22:18.478 -07 000000382 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:22:18.478 -07 000000576 INF: FPGA: Recv ZDACR 28648
17-03-17 22:22:18.488 -07 000000382 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:22:18.488 -07 000000382 INF: Z Motor: MoveAbsStepped took 48 ms (did NOT wait for settling yet))
17-03-17 22:22:18.568 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 62, FrontChillerTemperature: 4.008536,
17-03-17 22:22:18.628 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 388 ms.
17-03-17 22:22:18.628 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 22:22:18.628 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:22:18.628 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 392 ms.
17-03-17 22:22:18.628 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 22:22:18.628 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:22:18.638 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:22:18.638 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:22:18.638 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 22:22:18.638 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 22:22:18.838 -07 000000480 INF: FPGA: Recv YMVTILE
17-03-17 22:22:18.838 -07 000000459 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 22:22:18.888 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:22:18.888 -07 000000438 INF: FPGA: Recv YRDPOS 141369
17-03-17 22:22:18.898 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 22:22:18.898 -07 000000459 INF: Y Motor: Encoder = 141369 = motor step 110444.5 = 69.0278 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:22:18.898 -07 000000459 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-17 22:22:18.898 -07 000000459 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.837 mm, average velocity = 2.107 mm/sec
17-03-17 22:22:19.848 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:22:19.848 -07 000000502 INF: FPGA: Recv YRDPOS 141370
17-03-17 22:22:19.858 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:19.858 -07 000000459 INF: Y Motor: Encoder = 141370 = motor step 110445.3 = 69.0283 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:22:19.898 -07 000000459 INF: Y Motor: After move to 69.042610, error = -0.014290, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:22:19.898 -07 000000459 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 22:22:19.898 -07 000000459 INF: Y Motor: Moved to 69.0283 after 1460 ms (table move)
17-03-17 22:22:19.898 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.131142 mm (DAC = 28648)
17-03-17 22:22:19.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:19.898 -07 000000576 INF: FPGA: Recv ZSGSRD 29701
17-03-17 22:22:19.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:22:19.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:19.908 -07 000000459 INF: FPGA: Recv ZSGSRD 29700
17-03-17 22:22:19.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:19.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:19.918 -07 000000501 INF: FPGA: Recv ZSGSRD 29706
17-03-17 22:22:19.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:19.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:19.928 -07 000000424 INF: FPGA: Recv ZSGSRD 29704
17-03-17 22:22:19.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:19.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:19.938 -07 000000576 INF: FPGA: Recv ZSGSRD 29699
17-03-17 22:22:19.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:19.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:19.948 -07 000000501 INF: FPGA: Recv ZSGSRD 29704
17-03-17 22:22:19.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:19.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:19.958 -07 000000382 INF: FPGA: Recv ZSGSRD 29697
17-03-17 22:22:19.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:19.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:19.968 -07 000000576 INF: FPGA: Recv ZSGSRD 29704
17-03-17 22:22:19.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:19.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:19.978 -07 000000501 INF: FPGA: Recv ZSGSRD 29709
17-03-17 22:22:19.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:19.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:19.988 -07 000000576 INF: FPGA: Recv ZSGSRD 29708
17-03-17 22:22:19.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:19.998 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:22:19.998 -07 000000424 INF: FPGA: Recv ZPIEZORD 25459
17-03-17 22:22:20.008 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:20.008 -07 000000610 INF: Z Motor: Piezo is near 34.4 V (nominally 0 to 100 V), expect near 43.7 V, since DAC is at 4.371 V. Piezo Error = -9.3 V.
17-03-17 22:22:20.008 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.1 um, Read 10 ADC samples: Avg = 29703 (-130.4 uncal um), Error = 0.8 uncal um, Median = 29704 (-130.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29697 (-130.3 uncal um), Max = 29709 (-130.4 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 22:22:20.008 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29703, posNoise = 6, negNoise = 6
17-03-17 22:22:20.008 -07 000000610 INF: Z Motor: After move to -0.131142, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:22:20.008 -07 000000610 INF: Z Motor: Settle wait time = 1464 ms, measure time = 104 ms (allowed 150 ms), total time = 1568 ms
17-03-17 22:22:20.008 -07 000000610 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 22:22:20.058 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1620 ms
17-03-17 22:22:20.058 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:22:20.058 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.0283203125, Z-position -0.131141725257861. ----------
17-03-17 22:22:20.058 -07 000000610 INF: Cycle	62	Tile	12	Exposure Settings		A	450	G	216	T	216	C	450
17-03-17 22:22:20.058 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28472, sync = True, waitForSettling = True)
17-03-17 22:22:20.058 -07 000000610 INF: Z Motor: Moving to -0.130336 mm, started at -0.131142 mm, distance = 0.81 um
17-03-17 22:22:20.058 -07 000000610 INF: FPGA: Xmit ZDACW 28472\n [Z Motor]
17-03-17 22:22:20.058 -07 000000424 INF: FPGA: Recv ZDACW
17-03-17 22:22:20.068 -07 000000610 INF: FPGA: 'ZDACW 28472' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:22:20.068 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:22:20.068 -07 000000561 INF: FPGA: Recv ZDACR 28472
17-03-17 22:22:20.078 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:20.078 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:22:20.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:20.228 -07 000000576 INF: FPGA: Recv ZSGSRD 29569
17-03-17 22:22:20.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:20.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:20.238 -07 000000462 INF: FPGA: Recv ZSGSRD 29574
17-03-17 22:22:20.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:20.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:20.248 -07 000000424 INF: FPGA: Recv ZSGSRD 29579
17-03-17 22:22:20.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:20.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:20.258 -07 000000561 INF: FPGA: Recv ZSGSRD 29573
17-03-17 22:22:20.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:20.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:20.268 -07 000000459 INF: FPGA: Recv ZSGSRD 29578
17-03-17 22:22:20.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:20.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:20.278 -07 000000462 INF: FPGA: Recv ZSGSRD 29579
17-03-17 22:22:20.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:20.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:20.288 -07 000000459 INF: FPGA: Recv ZSGSRD 29582
17-03-17 22:22:20.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:20.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:20.298 -07 000000424 INF: FPGA: Recv ZSGSRD 29581
17-03-17 22:22:20.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:20.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:20.308 -07 000000462 INF: FPGA: Recv ZSGSRD 29577
17-03-17 22:22:20.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:20.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:20.318 -07 000000424 INF: FPGA: Recv ZSGSRD 29580
17-03-17 22:22:20.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:20.328 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:22:20.328 -07 000000424 INF: FPGA: Recv ZPIEZORD 25267
17-03-17 22:22:20.338 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:20.338 -07 000000610 INF: Z Motor: Piezo is near 34.0 V (nominally 0 to 100 V), expect near 43.4 V, since DAC is at 4.345 V. Piezo Error = -9.5 V.
17-03-17 22:22:20.338 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.3 um, Read 10 ADC samples: Avg = 29577 (-129.6 uncal um), Error = 0.8 uncal um, Median = 29578 (-129.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29569 (-129.5 uncal um), Max = 29582 (-129.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 22:22:20.338 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29577, posNoise = 5, negNoise = 8
17-03-17 22:22:20.338 -07 000000610 INF: Z Motor: After move to -0.130336, error = 0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:22:20.338 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-17 22:22:20.338 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:22:20.338 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:22:20.338 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:22:20.338 -07 000000459 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:22:20.338 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:22:20.338 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:22:20.338 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:22:20.338 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 22:22:20.338 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:22:20.338 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:22:20.338 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:22:20.338 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:22:20.348 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:22:20.348 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:22:20.348 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:22:20.348 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:22:20.348 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 22:22:20.348 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 22:22:20.348 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 22:22:20.348 -07 000000459 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 22:22:20.358 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 450 450 216 216 28648 150\n [Camera]
17-03-17 22:22:20.558 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:22:21.008 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 642
17-03-17 22:22:21.008 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 642
17-03-17 22:22:21.008 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:22:21.008 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:22:21.008 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-17 22:22:21.008 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 642
17-03-17 22:22:21.008 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 642
17-03-17 22:22:21.008 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:22:21.008 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:22:21.008 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 22:22:21.198 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28648 835
17-03-17 22:22:21.348 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning grn on 985
17-03-17 22:22:21.378 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 373 ms.
17-03-17 22:22:21.378 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-17 22:22:21.378 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:22:21.388 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 378 ms.
17-03-17 22:22:21.388 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-17 22:22:21.388 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:22:21.388 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:22:21.388 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:22:21.388 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 22:22:21.398 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-17 22:22:21.568 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1201
17-03-17 22:22:21.568 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1201
17-03-17 22:22:21.568 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:22:21.568 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:22:21.568 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 22:22:21.568 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1201
17-03-17 22:22:21.568 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1201
17-03-17 22:22:21.568 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:22:21.568 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:22:21.568 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) start.
17-03-17 22:22:21.758 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP 1393
17-03-17 22:22:21.758 -07 000000561 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:22:21.758 -07 000000610 INF: FPGA: 'CAMDBLSNAP 450 450 216 216 28648 150' command took 2 ms to send, 1392 ms to get response, and 1400 ms overall
17-03-17 22:22:21.758 -07 000000610 INF: Skipping AutoFocus in Tile 13: adopting Best-Z from the cache: -0.130780
17-03-17 22:22:21.758 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.13078 mm
17-03-17 22:22:21.758 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:22:21.758 -07 000000462 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-17 22:22:21.758 -07 000000462 INF: Y Motor: Moving to 69.8726 mm, started at 69.0283 mm, delta = 0.8443 mm
17-03-17 22:22:21.758 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:22:21.758 -07 000000459 INF: Z Motor: Entering MoveAbsStepped (DAC = 28569, sync = True, waitForSettling = False)
17-03-17 22:22:21.758 -07 000000459 INF: Z Motor: Moving to -0.130780 mm, started at -0.130332 mm, distance = -0.45 um
17-03-17 22:22:21.758 -07 000000561 INF: FPGA: Recv YRDPOS 141370
17-03-17 22:22:21.768 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:22:21.768 -07 000000462 INF: Y Motor: Encoder = 141370 = motor step 110445.3 = 69.0283 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:22:21.768 -07 000000462 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:22:21.768 -07 000000462 INF: Y Motor: Moving 1351 steps-30
17-03-17 22:22:21.768 -07 000000459 INF: FPGA: Xmit ZDACW 28569\n [Z Motor]
17-03-17 22:22:21.768 -07 000000561 INF: FPGA: Recv ZDACW
17-03-17 22:22:21.778 -07 000000459 INF: FPGA: 'ZDACW 28569' command took 1 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 22:22:21.778 -07 000000459 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:22:21.778 -07 000000561 INF: FPGA: Recv ZDACR 28569
17-03-17 22:22:21.788 -07 000000459 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:21.788 -07 000000459 INF: Z Motor: MoveAbsStepped took 22 ms (did NOT wait for settling yet))
17-03-17 22:22:21.788 -07 000000462 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:22:21.958 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 392 ms.
17-03-17 22:22:21.958 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 22:22:21.958 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:22:21.958 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) end. Duration was 389 ms.
17-03-17 22:22:21.958 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 22:22:21.958 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:22:21.958 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:22:21.958 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 22:22:21.958 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:22:21.968 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:22:21.968 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 61. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=992, R2=1018, Total=2010. Warn if over 250 bubbles per interval.
17-03-17 22:22:21.968 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-17 22:22:22.158 -07 000000561 INF: FPGA: Recv YMVTILE
17-03-17 22:22:22.158 -07 000000462 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 22:22:22.198 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:22:22.198 -07 000000576 INF: FPGA: Recv YRDPOS 143082
17-03-17 22:22:22.208 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:22:22.208 -07 000000462 INF: Y Motor: Encoder = 143082 = motor step 111782.8 = 69.8643 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:22:22.208 -07 000000462 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-17 22:22:22.208 -07 000000462 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.844 mm, average velocity = 2.121 mm/sec
17-03-17 22:22:23.158 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:22:23.158 -07 000000486 INF: FPGA: Recv YRDPOS 143082
17-03-17 22:22:23.168 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:22:23.168 -07 000000462 INF: Y Motor: Encoder = 143082 = motor step 111782.8 = 69.8643 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:22:23.188 -07 000000462 INF: Y Motor: After move to 69.872612, error = -0.008354, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:22:23.188 -07 000000462 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:22:23.188 -07 000000462 INF: Y Motor: Moved to 69.8643 after 1427 ms (table move)
17-03-17 22:22:23.188 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.130780 mm (DAC = 28569)
17-03-17 22:22:23.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:23.198 -07 000000459 INF: FPGA: Recv ZSGSRD 29654
17-03-17 22:22:23.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 22:22:23.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:23.198 -07 000000576 INF: FPGA: Recv ZSGSRD 29643
17-03-17 22:22:23.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:23.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:23.208 -07 000000569 INF: FPGA: Recv ZSGSRD 29650
17-03-17 22:22:23.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:23.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:23.218 -07 000000486 INF: FPGA: Recv ZSGSRD 29654
17-03-17 22:22:23.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:23.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:23.228 -07 000000561 INF: FPGA: Recv ZSGSRD 29646
17-03-17 22:22:23.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:23.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:23.238 -07 000000569 INF: FPGA: Recv ZSGSRD 29652
17-03-17 22:22:23.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:23.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:23.248 -07 000000576 INF: FPGA: Recv ZSGSRD 29650
17-03-17 22:22:23.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:23.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:23.258 -07 000000462 INF: FPGA: Recv ZSGSRD 29644
17-03-17 22:22:23.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:23.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:23.268 -07 000000486 INF: FPGA: Recv ZSGSRD 29644
17-03-17 22:22:23.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:23.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:23.278 -07 000000462 INF: FPGA: Recv ZSGSRD 29648
17-03-17 22:22:23.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:23.288 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:22:23.288 -07 000000459 INF: FPGA: Recv ZPIEZORD 25384
17-03-17 22:22:23.298 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:23.298 -07 000000610 INF: Z Motor: Piezo is near 34.2 V (nominally 0 to 100 V), expect near 43.6 V, since DAC is at 4.359 V. Piezo Error = -9.4 V.
17-03-17 22:22:23.298 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.8 um, Read 10 ADC samples: Avg = 29648 (-130.0 uncal um), Error = 0.8 uncal um, Median = 29649 (-130.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29643 (-130.0 uncal um), Max = 29654 (-130.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 22:22:23.298 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29648, posNoise = 6, negNoise = 5
17-03-17 22:22:23.298 -07 000000610 INF: Z Motor: After move to -0.130780, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:22:23.298 -07 000000610 INF: Z Motor: Settle wait time = 1429 ms, measure time = 104 ms (allowed 150 ms), total time = 1533 ms
17-03-17 22:22:23.298 -07 000000610 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 22:22:23.348 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1585 ms
17-03-17 22:22:23.348 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:22:23.348 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.8642578125, Z-position -0.130788393590064. ----------
17-03-17 22:22:23.348 -07 000000610 INF: Cycle	62	Tile	13	Exposure Settings		A	450	G	216	T	216	C	450
17-03-17 22:22:23.348 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28392, sync = True, waitForSettling = True)
17-03-17 22:22:23.348 -07 000000610 INF: Z Motor: Moving to -0.129970 mm, started at -0.130788 mm, distance = 0.82 um
17-03-17 22:22:23.348 -07 000000610 INF: FPGA: Xmit ZDACW 28392\n [Z Motor]
17-03-17 22:22:23.358 -07 000000459 INF: FPGA: Recv ZDACW
17-03-17 22:22:23.358 -07 000000610 INF: FPGA: 'ZDACW 28392' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 22:22:23.358 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:22:23.358 -07 000000561 INF: FPGA: Recv ZDACR 28392
17-03-17 22:22:23.368 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:22:23.368 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:22:23.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:23.518 -07 000000576 INF: FPGA: Recv ZSGSRD 29521
17-03-17 22:22:23.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:22:23.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:23.528 -07 000000486 INF: FPGA: Recv ZSGSRD 29519
17-03-17 22:22:23.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:23.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:23.538 -07 000000424 INF: FPGA: Recv ZSGSRD 29524
17-03-17 22:22:23.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:23.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:23.548 -07 000000462 INF: FPGA: Recv ZSGSRD 29525
17-03-17 22:22:23.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:23.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:23.558 -07 000000576 INF: FPGA: Recv ZSGSRD 29522
17-03-17 22:22:23.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:23.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:23.568 -07 000000459 INF: FPGA: Recv ZSGSRD 29522
17-03-17 22:22:23.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:23.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:23.578 -07 000000486 INF: FPGA: Recv ZSGSRD 29520
17-03-17 22:22:23.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:23.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:23.588 -07 000000561 INF: FPGA: Recv ZSGSRD 29517
17-03-17 22:22:23.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:23.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:23.598 -07 000000459 INF: FPGA: Recv ZSGSRD 29518
17-03-17 22:22:23.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:23.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:23.618 -07 000000424 INF: FPGA: Recv ZSGSRD 29526
17-03-17 22:22:23.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:22:23.628 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:22:23.628 -07 000000576 INF: FPGA: Recv ZPIEZORD 25174
17-03-17 22:22:23.638 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:23.638 -07 000000610 INF: Z Motor: Piezo is near 33.8 V (nominally 0 to 100 V), expect near 43.3 V, since DAC is at 4.332 V. Piezo Error = -9.5 V.
17-03-17 22:22:23.638 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.0 um, Read 10 ADC samples: Avg = 29521 (-129.2 uncal um), Error = 0.8 uncal um, Median = 29522 (-129.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29517 (-129.2 uncal um), Max = 29526 (-129.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 22:22:23.638 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29521, posNoise = 5, negNoise = 4
17-03-17 22:22:23.638 -07 000000610 INF: Z Motor: After move to -0.129970, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:22:23.638 -07 000000610 INF: Z Motor: MoveAbsStepped took 286 ms)
17-03-17 22:22:23.638 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:22:23.638 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:22:23.638 -07 000000486 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:22:23.638 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:22:23.638 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:22:23.638 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:22:23.638 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:22:23.638 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:22:23.638 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:22:23.638 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:22:23.638 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:22:23.638 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:22:23.648 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:22:23.648 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:22:23.648 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:22:23.648 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:22:23.658 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 13 ms.
17-03-17 22:22:23.658 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 22:22:23.658 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-17 22:22:23.658 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 22:22:23.658 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 450 450 216 216 28569 150\n [Camera]
17-03-17 22:22:23.858 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:22:23.928 -07 000000459 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 62, FrontChillerTemperature: 4.007176,
17-03-17 22:22:24.308 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 642
17-03-17 22:22:24.308 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 642
17-03-17 22:22:24.308 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:22:24.308 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:22:24.308 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1476890328, 0x0, 391868352) start.
17-03-17 22:22:24.308 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 642
17-03-17 22:22:24.308 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 642
17-03-17 22:22:24.318 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:22:24.318 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:22:24.318 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-17 22:22:24.498 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28569 835
17-03-17 22:22:24.658 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning grn on 988
17-03-17 22:22:24.688 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1476890328, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 22:22:24.688 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-17 22:22:24.688 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:22:24.688 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 22:22:24.688 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 22:22:24.688 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:22:24.688 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:22:24.688 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 22:22:24.698 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:22:24.698 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 22:22:24.868 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1201
17-03-17 22:22:24.868 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1201
17-03-17 22:22:24.868 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:22:24.868 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:22:24.868 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 22:22:24.868 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1201
17-03-17 22:22:24.868 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1201
17-03-17 22:22:24.868 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:22:24.868 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:22:24.868 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) start.
17-03-17 22:22:25.058 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP 1394
17-03-17 22:22:25.058 -07 000000462 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:22:25.058 -07 000000610 INF: FPGA: 'CAMDBLSNAP 450 450 216 216 28569 150' command took 2 ms to send, 1397 ms to get response, and 1400 ms overall
17-03-17 22:22:25.058 -07 000000610 INF: Skipping AutoFocus in Tile 14: adopting Best-Z from the cache: -0.130347
17-03-17 22:22:25.058 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.13035 mm
17-03-17 22:22:25.058 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:22:25.068 -07 000000459 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-17 22:22:25.068 -07 000000459 INF: Y Motor: Moving to 70.7026 mm, started at 69.8643 mm, delta = 0.8383 mm
17-03-17 22:22:25.068 -07 000000424 INF: Z Motor: Entering MoveAbsStepped (DAC = 28474, sync = True, waitForSettling = False)
17-03-17 22:22:25.068 -07 000000424 INF: Z Motor: Moving to -0.130346 mm, started at -0.129973 mm, distance = -0.37 um
17-03-17 22:22:25.068 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:22:25.068 -07 000000462 INF: FPGA: Recv YRDPOS 143082
17-03-17 22:22:25.078 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:22:25.078 -07 000000459 INF: Y Motor: Encoder = 143082 = motor step 111782.8 = 69.8643 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:22:25.078 -07 000000459 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:22:25.078 -07 000000459 INF: Y Motor: Moving 1341 steps-17
17-03-17 22:22:25.078 -07 000000459 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:22:25.088 -07 000000424 INF: FPGA: Xmit ZDACW 28474\n [Z Motor]
17-03-17 22:22:25.248 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) end. Duration was 380 ms.
17-03-17 22:22:25.258 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-17 22:22:25.258 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:22:25.258 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 385 ms.
17-03-17 22:22:25.258 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 22:22:25.258 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:22:25.258 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:22:25.258 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:22:25.258 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 22:22:25.268 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 22:22:25.268 -07 000000486 INF: FPGA: Recv ZDACW
17-03-17 22:22:25.268 -07 000000424 INF: FPGA: 'ZDACW 28474' command took 0 ms to send, 177 ms to get response, and 204 ms overall
17-03-17 22:22:25.268 -07 000000424 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:22:25.278 -07 000000486 INF: FPGA: Recv ZDACR 28474
17-03-17 22:22:25.278 -07 000000424 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 22:22:25.278 -07 000000424 INF: Z Motor: MoveAbsStepped took 207 ms (did NOT wait for settling yet))
17-03-17 22:22:25.458 -07 000000486 INF: FPGA: Recv YMVTILE
17-03-17 22:22:25.458 -07 000000459 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 380 ms overall
17-03-17 22:22:25.498 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:22:25.498 -07 000000623 INF: FPGA: Recv YRDPOS 144772
17-03-17 22:22:25.508 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:22:25.508 -07 000000459 INF: Y Motor: Encoder = 144772 = motor step 113103.1 = 70.6895 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:22:25.508 -07 000000459 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-17 22:22:25.508 -07 000000459 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 380 ms, distance = 0.838 mm, average velocity = 2.206 mm/sec
17-03-17 22:22:26.458 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:22:26.458 -07 000000424 INF: FPGA: Recv YRDPOS 144772
17-03-17 22:22:26.468 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:22:26.468 -07 000000459 INF: Y Motor: Encoder = 144772 = motor step 113103.1 = 70.6895 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:22:26.488 -07 000000459 INF: Y Motor: After move to 70.702606, error = -0.013153, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:22:26.488 -07 000000459 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:22:26.488 -07 000000459 INF: Y Motor: Moved to 70.6895 after 1422 ms (table move)
17-03-17 22:22:26.488 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.130346 mm (DAC = 28474)
17-03-17 22:22:26.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:26.498 -07 000000459 INF: FPGA: Recv ZSGSRD 29587
17-03-17 22:22:26.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 22:22:26.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:26.498 -07 000000486 INF: FPGA: Recv ZSGSRD 29579
17-03-17 22:22:26.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:22:26.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:26.508 -07 000000424 INF: FPGA: Recv ZSGSRD 29586
17-03-17 22:22:26.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:26.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:26.518 -07 000000486 INF: FPGA: Recv ZSGSRD 29584
17-03-17 22:22:26.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:26.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:26.528 -07 000000424 INF: FPGA: Recv ZSGSRD 29578
17-03-17 22:22:26.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:26.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:26.538 -07 000000459 INF: FPGA: Recv ZSGSRD 29580
17-03-17 22:22:26.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:26.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:26.548 -07 000000424 INF: FPGA: Recv ZSGSRD 29579
17-03-17 22:22:26.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:26.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:26.558 -07 000000459 INF: FPGA: Recv ZSGSRD 29579
17-03-17 22:22:26.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:26.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:26.568 -07 000000424 INF: FPGA: Recv ZSGSRD 29579
17-03-17 22:22:26.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:26.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:26.578 -07 000000623 INF: FPGA: Recv ZSGSRD 29581
17-03-17 22:22:26.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:26.588 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:22:26.588 -07 000000623 INF: FPGA: Recv ZPIEZORD 25306
17-03-17 22:22:26.598 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:26.598 -07 000000610 INF: Z Motor: Piezo is near 34.1 V (nominally 0 to 100 V), expect near 43.4 V, since DAC is at 4.345 V. Piezo Error = -9.4 V.
17-03-17 22:22:26.598 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.3 um, Read 10 ADC samples: Avg = 29581 (-129.6 uncal um), Error = 0.8 uncal um, Median = 29580 (-129.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29578 (-129.6 uncal um), Max = 29587 (-129.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 22:22:26.598 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29581, posNoise = 6, negNoise = 3
17-03-17 22:22:26.598 -07 000000610 INF: Z Motor: After move to -0.130346, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:22:26.598 -07 000000610 INF: Z Motor: Settle wait time = 1425 ms, measure time = 103 ms (allowed 150 ms), total time = 1528 ms
17-03-17 22:22:26.598 -07 000000610 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 22:22:26.648 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1580 ms
17-03-17 22:22:26.648 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:22:26.648 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.689453125, Z-position -0.130357971376566. ----------
17-03-17 22:22:26.648 -07 000000610 INF: Cycle	62	Tile	14	Exposure Settings		A	450	G	216	T	216	C	450
17-03-17 22:22:26.648 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28297, sync = True, waitForSettling = True)
17-03-17 22:22:26.648 -07 000000610 INF: Z Motor: Moving to -0.129535 mm, started at -0.130358 mm, distance = 0.82 um
17-03-17 22:22:26.648 -07 000000610 INF: FPGA: Xmit ZDACW 28297\n [Z Motor]
17-03-17 22:22:26.658 -07 000000623 INF: FPGA: Recv ZDACW
17-03-17 22:22:26.658 -07 000000610 INF: FPGA: 'ZDACW 28297' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 22:22:26.658 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:22:26.658 -07 000000623 INF: FPGA: Recv ZDACR 28297
17-03-17 22:22:26.668 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:26.668 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:22:26.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:26.818 -07 000000459 INF: FPGA: Recv ZSGSRD 29457
17-03-17 22:22:26.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:22:26.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:26.828 -07 000000623 INF: FPGA: Recv ZSGSRD 29456
17-03-17 22:22:26.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:26.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:26.838 -07 000000459 INF: FPGA: Recv ZSGSRD 29455
17-03-17 22:22:26.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:26.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:26.848 -07 000000486 INF: FPGA: Recv ZSGSRD 29452
17-03-17 22:22:26.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:26.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:26.858 -07 000000424 INF: FPGA: Recv ZSGSRD 29451
17-03-17 22:22:26.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:26.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:26.868 -07 000000424 INF: FPGA: Recv ZSGSRD 29448
17-03-17 22:22:26.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:26.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:26.878 -07 000000623 INF: FPGA: Recv ZSGSRD 29453
17-03-17 22:22:26.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:26.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:26.888 -07 000000623 INF: FPGA: Recv ZSGSRD 29452
17-03-17 22:22:26.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:26.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:26.898 -07 000000424 INF: FPGA: Recv ZSGSRD 29452
17-03-17 22:22:26.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:26.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:26.908 -07 000000459 INF: FPGA: Recv ZSGSRD 29450
17-03-17 22:22:26.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:26.918 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:22:26.918 -07 000000486 INF: FPGA: Recv ZPIEZORD 25125
17-03-17 22:22:26.928 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:26.928 -07 000000610 INF: Z Motor: Piezo is near 33.7 V (nominally 0 to 100 V), expect near 43.2 V, since DAC is at 4.318 V. Piezo Error = -9.5 V.
17-03-17 22:22:26.928 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.5 um, Read 10 ADC samples: Avg = 29453 (-128.8 uncal um), Error = 0.8 uncal um, Median = 29452 (-128.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29448 (-128.7 uncal um), Max = 29457 (-128.8 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 22:22:26.928 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29453, posNoise = 4, negNoise = 5
17-03-17 22:22:26.928 -07 000000610 INF: Z Motor: After move to -0.129535, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:22:26.928 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 22:22:26.928 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:22:26.928 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:22:26.928 -07 000000623 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:22:26.928 -07 000000459 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:22:26.928 -07 000000486 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:22:26.928 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:22:26.928 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:22:26.928 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:22:26.928 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 22:22:26.928 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:22:26.928 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:22:26.928 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:22:26.938 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:22:26.938 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:22:26.938 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:22:26.938 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:22:26.948 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 22:22:26.948 -07 000000623 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 22:22:26.948 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 22:22:26.948 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 22:22:26.948 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 450 450 216 216 28474 150\n [Camera]
17-03-17 22:22:26.968 -07 000000448 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:22:26.968 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 61. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=992, R2=1018, Total=2010. Warn if over 250 bubbles per interval.
17-03-17 22:22:27.158 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning red on 196
17-03-17 22:22:27.598 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 642
17-03-17 22:22:27.598 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 642
17-03-17 22:22:27.608 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:22:27.608 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:22:27.608 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 1476890328, 0x0, 391868352) start.
17-03-17 22:22:27.608 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 642
17-03-17 22:22:27.608 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 642
17-03-17 22:22:27.608 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:22:27.608 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:22:27.608 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-17 22:22:27.798 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28474 835
17-03-17 22:22:27.948 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning grn on 985
17-03-17 22:22:27.998 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 1476890328, 0x0, 391868352) end. Duration was 396 ms.
17-03-17 22:22:27.998 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 22:22:27.998 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:22:28.008 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 396 ms.
17-03-17 22:22:28.008 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 22:22:28.008 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:22:28.008 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:22:28.008 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 22:22:28.008 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:22:28.018 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-17 22:22:28.158 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1201
17-03-17 22:22:28.158 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1201
17-03-17 22:22:28.158 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:22:28.158 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:22:28.158 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start.
17-03-17 22:22:28.168 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1201
17-03-17 22:22:28.168 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1201
17-03-17 22:22:28.168 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:22:28.168 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:22:28.168 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) start.
17-03-17 22:22:28.358 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP 1396
17-03-17 22:22:28.358 -07 000000482 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:22:28.358 -07 000000610 INF: FPGA: 'CAMDBLSNAP 450 450 216 216 28474 150' command took 2 ms to send, 1393 ms to get response, and 1403 ms overall
17-03-17 22:22:28.358 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 22:22:28.358 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.689453125, Z-Position -0.12953567222242. ------
17-03-17 22:22:28.358 -07 000000623 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:22:28.358 -07 000000458 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.13627 mm
17-03-17 22:22:28.358 -07 000000458 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:22:28.368 -07 000000482 INF: Z Motor: Entering MoveAbsStepped (DAC = 29769, sync = True, waitForSettling = False)
17-03-17 22:22:28.368 -07 000000482 INF: Z Motor: Moving to -0.136274 mm, started at -0.129536 mm, distance = -6.74 um
17-03-17 22:22:28.368 -07 000000482 INF: FPGA: Xmit ZDACW 29769\n [Z Motor]
17-03-17 22:22:28.368 -07 000000382 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-17 22:22:28.368 -07 000000382 INF: Y Motor: Moving to 71.5326 mm, started at 70.6895 mm, delta = 0.8432 mm
17-03-17 22:22:28.368 -07 000000486 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:22:28.368 -07 000000623 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 22:22:28.368 -07 000000438 INF: FPGA: Recv ZDACW
17-03-17 22:22:28.378 -07 000000482 INF: FPGA: 'ZDACW 29769' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:28.378 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:22:28.378 -07 000000424 INF: FPGA: Recv YRDPOS 144772
17-03-17 22:22:28.388 -07 000000623 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:22:28.388 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:22:28.388 -07 000000382 INF: Y Motor: Encoder = 144772 = motor step 113103.1 = 70.6895 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:22:28.388 -07 000000382 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:22:28.388 -07 000000382 INF: Y Motor: Moving 1349 steps-27
17-03-17 22:22:28.398 -07 000000482 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:22:28.398 -07 000000438 INF: FPGA: Recv ZDACR 29769
17-03-17 22:22:28.408 -07 000000382 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:22:28.408 -07 000000482 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:22:28.408 -07 000000482 INF: Z Motor: MoveAbsStepped took 39 ms (did NOT wait for settling yet))
17-03-17 22:22:28.548 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 22:22:28.548 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 22:22:28.548 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:22:28.548 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 22:22:28.548 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 22:22:28.548 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:22:28.548 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 22:22:28.548 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 22:22:28.548 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 22:22:28.558 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 22:22:28.588 -07 000000438 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:22:28.588 -07 000000623 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 221 ms overall
17-03-17 22:22:28.778 -07 000000501 INF: FPGA: Recv YMVTILE
17-03-17 22:22:28.778 -07 000000382 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 22:22:28.838 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:22:28.838 -07 000000448 INF: FPGA: Recv YRDPOS 146472
17-03-17 22:22:28.848 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:22:28.848 -07 000000382 INF: Y Motor: Encoder = 146472 = motor step 114431.3 = 71.5195 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:22:28.848 -07 000000382 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-17 22:22:28.848 -07 000000382 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.843 mm, average velocity = 2.124 mm/sec
17-03-17 22:22:29.298 -07 000000438 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 62, FrontChillerTemperature: 4.018051,
17-03-17 22:22:29.798 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:22:29.798 -07 000000618 INF: FPGA: Recv YRDPOS 146473
17-03-17 22:22:29.808 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:22:29.808 -07 000000382 INF: Y Motor: Encoder = 146473 = motor step 114432.0 = 71.5200 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:22:29.828 -07 000000382 INF: Y Motor: After move to 71.532608, error = -0.012589, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:22:29.828 -07 000000382 INF: Y Motor: Position error after settling (table move) = -26 encoder counts (-0.013 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 22:22:29.828 -07 000000382 INF: Y Motor: Moved to 71.5200 after 1465 ms (table move)
17-03-17 22:22:29.828 -07 000000458 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136274 mm (DAC = 29769)
17-03-17 22:22:29.828 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:29.838 -07 000000424 INF: FPGA: Recv ZSGSRD 30510
17-03-17 22:22:29.838 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 4 ms to get response, and 5 ms overall
17-03-17 22:22:29.838 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:29.838 -07 000000448 INF: FPGA: Recv ZSGSRD 30503
17-03-17 22:22:29.848 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 22:22:29.848 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:29.848 -07 000000486 INF: FPGA: Recv ZSGSRD 30501
17-03-17 22:22:29.858 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:29.858 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:29.858 -07 000000618 INF: FPGA: Recv ZSGSRD 30502
17-03-17 22:22:29.868 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:29.868 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:29.868 -07 000000448 INF: FPGA: Recv ZSGSRD 30503
17-03-17 22:22:29.878 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:29.878 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:29.878 -07 000000618 INF: FPGA: Recv ZSGSRD 30505
17-03-17 22:22:29.888 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:29.888 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:29.888 -07 000000448 INF: FPGA: Recv ZSGSRD 30499
17-03-17 22:22:29.898 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:29.898 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:29.898 -07 000000486 INF: FPGA: Recv ZSGSRD 30498
17-03-17 22:22:29.908 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:29.908 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:29.908 -07 000000486 INF: FPGA: Recv ZSGSRD 30499
17-03-17 22:22:29.918 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:29.918 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:29.918 -07 000000486 INF: FPGA: Recv ZSGSRD 30504
17-03-17 22:22:29.928 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:29.928 -07 000000458 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:22:29.928 -07 000000486 INF: FPGA: Recv ZPIEZORD 26553
17-03-17 22:22:29.938 -07 000000458 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:29.938 -07 000000458 INF: Z Motor: Piezo is near 36.7 V (nominally 0 to 100 V), expect near 45.4 V, since DAC is at 4.542 V. Piezo Error = -8.7 V.
17-03-17 22:22:29.938 -07 000000458 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.3 um, Read 10 ADC samples: Avg = 30502 (-135.5 uncal um), Error = 0.8 uncal um, Median = 30502 (-135.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30498 (-135.5 uncal um), Max = 30510 (-135.5 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 22:22:29.938 -07 000000458 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30502, posNoise = 8, negNoise = 4
17-03-17 22:22:29.938 -07 000000458 INF: Z Motor: After move to -0.136274, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:22:29.938 -07 000000458 INF: Z Motor: Settle wait time = 1469 ms, measure time = 101 ms (allowed 150 ms), total time = 1570 ms
17-03-17 22:22:29.938 -07 000000458 INF: Z Motor: Waiting extra 49 ms after reading position to reach expected total of 150 ms
17-03-17 22:22:29.988 -07 000000458 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1621 ms
17-03-17 22:22:29.988 -07 000000458 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:22:29.988 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:22:29.988 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:22:29.988 -07 000000486 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:22:29.988 -07 000000458 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:22:29.988 -07 000000448 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:22:29.988 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:22:29.988 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:22:29.988 -07 000000448 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:22:29.988 -07 000000448 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:22:29.998 -07 000000448 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:22:29.998 -07 000000448 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 22:22:29.998 -07 000000448 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 22:22:29.998 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:22:30.048 -07 000000618 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:22:30.248 -07 000000618 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:22:30.248 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:22:30.248 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:22:30.248 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 22:22:30.288 -07 000000486 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:22:30.288 -07 000000448 INF: FPGA: Recv CAMSNAP
17-03-17 22:22:30.288 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 274 ms to get response, and 285 ms overall
17-03-17 22:22:30.378 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 22:22:30.378 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:22:30.378 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:22:30.378 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 22:22:30.388 -07 000000486 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:22:30.388 -07 000000448 INF: Autofocus start
17-03-17 22:22:30.388 -07 000000448 INF: MeasureProfile start
17-03-17 22:22:30.388 -07 000000458 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:22:30.398 -07 000000486 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 22:22:30.398 -07 000000486 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:22:30.398 -07 000000448 INF: MeasureProfile done
17-03-17 22:22:30.398 -07 000000448 INF: X=-48  Z correction [um]=-0.2370583
17-03-17 22:22:30.398 -07 000000448 INF: Autofocus finished
17-03-17 22:22:30.598 -07 000000618 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:22:30.598 -07 000000486 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:22:30.598 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.52001953125, Z-position -0.136274670759128. ----------
17-03-17 22:22:30.598 -07 000000610 INF: Cycle	62	Tile	15	Exposure Settings		A	450	G	216	T	216	C	450
17-03-17 22:22:30.608 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28230, sync = True, waitForSettling = True)
17-03-17 22:22:30.608 -07 000000610 INF: Z Motor: Moving to -0.129229 mm, started at -0.136275 mm, distance = 7.05 um
17-03-17 22:22:30.608 -07 000000610 INF: FPGA: Xmit ZDACW 28230\n [Z Motor]
17-03-17 22:22:30.608 -07 000000618 INF: FPGA: Recv ZDACW
17-03-17 22:22:30.618 -07 000000610 INF: FPGA: 'ZDACW 28230' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:22:30.618 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:22:30.618 -07 000000486 INF: FPGA: Recv ZDACR 28230
17-03-17 22:22:30.628 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:30.628 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:22:30.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:30.778 -07 000000448 INF: FPGA: Recv ZSGSRD 29402
17-03-17 22:22:30.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:22:30.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:30.788 -07 000000486 INF: FPGA: Recv ZSGSRD 29409
17-03-17 22:22:30.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:30.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:30.798 -07 000000618 INF: FPGA: Recv ZSGSRD 29408
17-03-17 22:22:30.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:30.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:30.808 -07 000000486 INF: FPGA: Recv ZSGSRD 29407
17-03-17 22:22:30.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:30.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:30.818 -07 000000448 INF: FPGA: Recv ZSGSRD 29404
17-03-17 22:22:30.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:30.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:30.828 -07 000000448 INF: FPGA: Recv ZSGSRD 29404
17-03-17 22:22:30.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:30.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:30.838 -07 000000458 INF: FPGA: Recv ZSGSRD 29408
17-03-17 22:22:30.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:30.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:30.848 -07 000000448 INF: FPGA: Recv ZSGSRD 29403
17-03-17 22:22:30.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:30.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:30.858 -07 000000458 INF: FPGA: Recv ZSGSRD 29404
17-03-17 22:22:30.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:30.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:30.868 -07 000000618 INF: FPGA: Recv ZSGSRD 29409
17-03-17 22:22:30.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:30.878 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:22:30.878 -07 000000448 INF: FPGA: Recv ZPIEZORD 25072
17-03-17 22:22:30.888 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:30.888 -07 000000610 INF: Z Motor: Piezo is near 33.6 V (nominally 0 to 100 V), expect near 43.1 V, since DAC is at 4.308 V. Piezo Error = -9.5 V.
17-03-17 22:22:30.888 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.2 um, Read 10 ADC samples: Avg = 29406 (-128.5 uncal um), Error = 0.8 uncal um, Median = 29406 (-128.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 29402 (-128.4 uncal um), Max = 29409 (-128.5 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 22:22:30.888 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29406, posNoise = 3, negNoise = 4
17-03-17 22:22:30.888 -07 000000610 INF: Z Motor: After move to -0.129229, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:22:30.888 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 22:22:30.888 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:22:30.888 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:22:30.888 -07 000000458 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:22:30.888 -07 000000448 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:22:30.888 -07 000000486 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:22:30.888 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:22:30.888 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:22:30.888 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:22:30.888 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-17 22:22:30.888 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:22:30.888 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:22:30.888 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:22:30.898 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:22:30.898 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:22:30.898 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:22:30.898 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:22:30.908 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 22:22:30.908 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 22:22:30.908 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 22:22:30.908 -07 000000486 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 23 ms.
17-03-17 22:22:30.918 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 450 450 216 216 28407 150\n [Camera]
17-03-17 22:22:31.118 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:22:31.568 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 642
17-03-17 22:22:31.568 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 642
17-03-17 22:22:31.568 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:22:31.568 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:22:31.568 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 22:22:31.568 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 642
17-03-17 22:22:31.568 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 642
17-03-17 22:22:31.568 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:22:31.688 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:22:31.688 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 22:22:31.758 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28407 836
17-03-17 22:22:31.908 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP turning grn on 985
17-03-17 22:22:31.948 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 382 ms.
17-03-17 22:22:31.948 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 22:22:31.948 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:22:31.948 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:22:31.948 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 22:22:31.968 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:22:31.968 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 61. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=992, R2=1018, Total=2010. Warn if over 250 bubbles per interval.
17-03-17 22:22:32.068 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 22:22:32.068 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 22:22:32.068 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:22:32.068 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:22:32.078 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 508 ms.
17-03-17 22:22:32.118 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1201
17-03-17 22:22:32.118 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1201
17-03-17 22:22:32.128 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:22:32.128 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:22:32.128 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1201
17-03-17 22:22:32.128 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 1441468064, 0x0, 391868352) start.
17-03-17 22:22:32.128 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1201
17-03-17 22:22:32.128 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:22:32.128 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:22:32.128 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 1476890328, 0x0, 418435064) start.
17-03-17 22:22:32.318 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP 1393
17-03-17 22:22:32.318 -07 000000486 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:22:32.318 -07 000000610 INF: FPGA: 'CAMDBLSNAP 450 450 216 216 28407 150' command took 2 ms to send, 1391 ms to get response, and 1400 ms overall
17-03-17 22:22:32.318 -07 000000610 INF: Skipping AutoFocus in Tile 16: adopting Best-Z from the cache: -0.129583
17-03-17 22:22:32.318 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.12958 mm
17-03-17 22:22:32.318 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:22:32.318 -07 000000576 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-17 22:22:32.318 -07 000000576 INF: Y Motor: Moving to 72.3626 mm, started at 71.5200 mm, delta = 0.8426 mm
17-03-17 22:22:32.318 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:22:32.318 -07 000000551 INF: Z Motor: Entering MoveAbsStepped (DAC = 28307, sync = True, waitForSettling = False)
17-03-17 22:22:32.318 -07 000000551 INF: Z Motor: Moving to -0.129581 mm, started at -0.129234 mm, distance = -0.35 um
17-03-17 22:22:32.318 -07 000000618 INF: FPGA: Recv YRDPOS 146473
17-03-17 22:22:32.328 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 22:22:32.328 -07 000000551 INF: FPGA: Xmit ZDACW 28307\n [Z Motor]
17-03-17 22:22:32.328 -07 000000576 INF: Y Motor: Encoder = 146473 = motor step 114432.0 = 71.5200 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:22:32.328 -07 000000576 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:22:32.328 -07 000000576 INF: Y Motor: Moving 1348 steps-27
17-03-17 22:22:32.328 -07 000000618 INF: FPGA: Recv ZDACW
17-03-17 22:22:32.338 -07 000000551 INF: FPGA: 'ZDACW 28307' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 22:22:32.338 -07 000000551 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:22:32.338 -07 000000569 INF: FPGA: Recv ZDACR 28307
17-03-17 22:22:32.348 -07 000000576 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:22:32.348 -07 000000551 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:32.348 -07 000000551 INF: Z Motor: MoveAbsStepped took 23 ms (did NOT wait for settling yet))
17-03-17 22:22:32.508 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 1476890328, 0x0, 418435064) end. Duration was 383 ms.
17-03-17 22:22:32.508 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-17 22:22:32.508 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:22:32.508 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 1441468064, 0x0, 391868352) end. Duration was 384 ms.
17-03-17 22:22:32.508 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 22:22:32.508 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:22:32.518 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:22:32.518 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:22:32.518 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 22:22:32.518 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 22:22:32.718 -07 000000561 INF: FPGA: Recv YMVTILE
17-03-17 22:22:32.718 -07 000000576 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-17 22:22:32.758 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:22:32.768 -07 000000551 INF: FPGA: Recv YRDPOS 148173
17-03-17 22:22:32.768 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 22:22:32.768 -07 000000576 INF: Y Motor: Encoder = 148173 = motor step 115760.2 = 72.3501 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:22:32.768 -07 000000576 INF: Y Motor: Position error before settling (table move) = -26 encoder counts (-0.013 mm)
17-03-17 22:22:32.768 -07 000000576 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 396 ms, distance = 0.843 mm, average velocity = 2.128 mm/sec
17-03-17 22:22:33.718 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:22:33.718 -07 000000462 INF: FPGA: Recv YRDPOS 148174
17-03-17 22:22:33.728 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:22:33.728 -07 000000576 INF: Y Motor: Encoder = 148174 = motor step 115760.9 = 72.3506 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:22:33.748 -07 000000576 INF: Y Motor: After move to 72.362610, error = -0.012024, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:22:33.748 -07 000000576 INF: Y Motor: Position error after settling (table move) = -25 encoder counts (-0.012 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 22:22:33.748 -07 000000576 INF: Y Motor: Moved to 72.3506 after 1429 ms (table move)
17-03-17 22:22:33.748 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.129581 mm (DAC = 28307)
17-03-17 22:22:33.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:33.758 -07 000000458 INF: FPGA: Recv ZSGSRD 29449
17-03-17 22:22:33.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 3 ms to get response, and 5 ms overall
17-03-17 22:22:33.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:33.758 -07 000000561 INF: FPGA: Recv ZSGSRD 29462
17-03-17 22:22:33.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:22:33.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:33.768 -07 000000458 INF: FPGA: Recv ZSGSRD 29457
17-03-17 22:22:33.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:33.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:33.778 -07 000000561 INF: FPGA: Recv ZSGSRD 29460
17-03-17 22:22:33.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:33.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:33.788 -07 000000458 INF: FPGA: Recv ZSGSRD 29463
17-03-17 22:22:33.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:33.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:33.798 -07 000000618 INF: FPGA: Recv ZSGSRD 29461
17-03-17 22:22:33.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:33.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:33.808 -07 000000458 INF: FPGA: Recv ZSGSRD 29457
17-03-17 22:22:33.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:33.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:33.818 -07 000000618 INF: FPGA: Recv ZSGSRD 29464
17-03-17 22:22:33.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:33.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:33.828 -07 000000618 INF: FPGA: Recv ZSGSRD 29458
17-03-17 22:22:33.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:33.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:33.838 -07 000000561 INF: FPGA: Recv ZSGSRD 29456
17-03-17 22:22:33.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:33.848 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:22:33.848 -07 000000618 INF: FPGA: Recv ZPIEZORD 25151
17-03-17 22:22:33.858 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:33.858 -07 000000610 INF: Z Motor: Piezo is near 33.7 V (nominally 0 to 100 V), expect near 43.2 V, since DAC is at 4.319 V. Piezo Error = -9.5 V.
17-03-17 22:22:33.858 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.6 um, Read 10 ADC samples: Avg = 29459 (-128.8 uncal um), Error = 0.8 uncal um, Median = 29459 (-128.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 29449 (-128.7 uncal um), Max = 29464 (-128.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-17 22:22:33.858 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29459, posNoise = 5, negNoise = 10
17-03-17 22:22:33.858 -07 000000610 INF: Z Motor: After move to -0.129581, error = 0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:22:33.858 -07 000000610 INF: Z Motor: Settle wait time = 1430 ms, measure time = 104 ms (allowed 150 ms), total time = 1534 ms
17-03-17 22:22:33.858 -07 000000610 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 22:22:33.908 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1586 ms
17-03-17 22:22:33.908 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:22:33.908 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.3505859375, Z-position -0.129574217495271. ----------
17-03-17 22:22:33.908 -07 000000610 INF: Cycle	62	Tile	16	Exposure Settings		A	450	G	216	T	216	C	450
17-03-17 22:22:33.908 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28131, sync = True, waitForSettling = True)
17-03-17 22:22:33.908 -07 000000610 INF: Z Motor: Moving to -0.128775 mm, started at -0.129574 mm, distance = 0.80 um
17-03-17 22:22:33.908 -07 000000610 INF: FPGA: Xmit ZDACW 28131\n [Z Motor]
17-03-17 22:22:33.908 -07 000000448 INF: FPGA: Recv ZDACW
17-03-17 22:22:33.918 -07 000000610 INF: FPGA: 'ZDACW 28131' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:22:33.918 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:22:33.918 -07 000000448 INF: FPGA: Recv ZDACR 28131
17-03-17 22:22:33.928 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:33.928 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:22:34.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:34.078 -07 000000486 INF: FPGA: Recv ZSGSRD 29339
17-03-17 22:22:34.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:22:34.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:34.088 -07 000000486 INF: FPGA: Recv ZSGSRD 29336
17-03-17 22:22:34.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:34.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:34.098 -07 000000486 INF: FPGA: Recv ZSGSRD 29337
17-03-17 22:22:34.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:34.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:34.108 -07 000000448 INF: FPGA: Recv ZSGSRD 29333
17-03-17 22:22:34.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:34.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:34.118 -07 000000486 INF: FPGA: Recv ZSGSRD 29337
17-03-17 22:22:34.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:34.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:34.128 -07 000000448 INF: FPGA: Recv ZSGSRD 29340
17-03-17 22:22:34.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:34.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:34.138 -07 000000448 INF: FPGA: Recv ZSGSRD 29334
17-03-17 22:22:34.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:34.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:34.148 -07 000000448 INF: FPGA: Recv ZSGSRD 29339
17-03-17 22:22:34.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:34.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:34.158 -07 000000448 INF: FPGA: Recv ZSGSRD 29337
17-03-17 22:22:34.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:34.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:34.168 -07 000000448 INF: FPGA: Recv ZSGSRD 29337
17-03-17 22:22:34.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:34.178 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:22:34.178 -07 000000448 INF: FPGA: Recv ZPIEZORD 25053
17-03-17 22:22:34.188 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:34.188 -07 000000610 INF: Z Motor: Piezo is near 33.5 V (nominally 0 to 100 V), expect near 42.9 V, since DAC is at 4.293 V. Piezo Error = -9.4 V.
17-03-17 22:22:34.188 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.8 um, Read 10 ADC samples: Avg = 29337 (-128.0 uncal um), Error = 0.8 uncal um, Median = 29337 (-128.0 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 29333 (-128.0 uncal um), Max = 29340 (-128.0 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 22:22:34.188 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29337, posNoise = 3, negNoise = 4
17-03-17 22:22:34.188 -07 000000610 INF: Z Motor: After move to -0.128775, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:22:34.188 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-17 22:22:34.188 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:22:34.188 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:22:34.188 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:22:34.188 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:22:34.188 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:22:34.188 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:22:34.188 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:22:34.188 -07 000000458 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:22:34.188 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 22:22:34.188 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:22:34.188 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 22:22:34.188 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:22:34.198 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 22:22:34.198 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:22:34.198 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 22:22:34.198 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:22:34.198 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 22:22:34.198 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 12 ms.
17-03-17 22:22:34.208 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 22:22:34.208 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 22:22:34.208 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 450 450 216 216 28307 150\n [Camera]
17-03-17 22:22:34.408 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:22:34.668 -07 000000561 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 62, FrontChillerTemperature: 4.003063,
17-03-17 22:22:34.858 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 645
17-03-17 22:22:34.858 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 645
17-03-17 22:22:34.858 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:22:34.858 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:22:34.858 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-17 22:22:34.858 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 645
17-03-17 22:22:34.858 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 645
17-03-17 22:22:34.868 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:22:34.868 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:22:34.868 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-17 22:22:35.048 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28307 835
17-03-17 22:22:35.198 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP turning grn on 985
17-03-17 22:22:35.238 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 372 ms.
17-03-17 22:22:35.238 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-17 22:22:35.238 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:22:35.238 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 378 ms.
17-03-17 22:22:35.238 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-17 22:22:35.238 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:22:35.238 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:22:35.248 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:22:35.248 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 22:22:35.248 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-17 22:22:35.418 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1201
17-03-17 22:22:35.418 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1201
17-03-17 22:22:35.418 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:22:35.538 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:22:35.538 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 22:22:35.538 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1201
17-03-17 22:22:35.538 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1201
17-03-17 22:22:35.538 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:22:35.538 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:22:35.538 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) start.
17-03-17 22:22:35.608 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP 1393
17-03-17 22:22:35.608 -07 000000458 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:22:35.608 -07 000000610 INF: FPGA: 'CAMDBLSNAP 450 450 216 216 28307 150' command took 2 ms to send, 1393 ms to get response, and 1400 ms overall
17-03-17 22:22:35.608 -07 000000610 INF: Skipping AutoFocus in Tile 17: adopting Best-Z from the cache: -0.129319
17-03-17 22:22:35.608 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.12932 mm
17-03-17 22:22:35.608 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:22:35.608 -07 000000482 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-17 22:22:35.608 -07 000000482 INF: Y Motor: Moving to 73.1926 mm, started at 72.3506 mm, delta = 0.8420 mm
17-03-17 22:22:35.608 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:22:35.608 -07 000000501 INF: Z Motor: Entering MoveAbsStepped (DAC = 28250, sync = True, waitForSettling = False)
17-03-17 22:22:35.608 -07 000000501 INF: Z Motor: Moving to -0.129320 mm, started at -0.128790 mm, distance = -0.53 um
17-03-17 22:22:35.618 -07 000000501 INF: FPGA: Xmit ZDACW 28250\n [Z Motor]
17-03-17 22:22:35.618 -07 000000382 INF: FPGA: Recv YRDPOS 148174
17-03-17 22:22:35.618 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 22:22:35.618 -07 000000482 INF: Y Motor: Encoder = 148174 = motor step 115760.9 = 72.3506 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:22:35.618 -07 000000482 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:22:35.618 -07 000000482 INF: Y Motor: Moving 1347 steps-26
17-03-17 22:22:35.618 -07 000000458 INF: FPGA: Recv ZDACW
17-03-17 22:22:35.628 -07 000000501 INF: FPGA: 'ZDACW 28250' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 22:22:35.628 -07 000000501 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:22:35.628 -07 000000561 INF: FPGA: Recv ZDACR 28250
17-03-17 22:22:35.638 -07 000000482 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:22:35.638 -07 000000501 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:35.638 -07 000000501 INF: Z Motor: MoveAbsStepped took 22 ms (did NOT wait for settling yet))
17-03-17 22:22:35.918 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 22:22:35.918 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 22:22:35.918 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:22:35.918 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 22:22:35.918 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 22:22:35.918 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:22:35.928 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:22:35.928 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 508 ms.
17-03-17 22:22:35.928 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:22:35.928 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 22:22:36.008 -07 000000480 INF: FPGA: Recv YMVTILE
17-03-17 22:22:36.008 -07 000000482 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 22:22:36.048 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:22:36.058 -07 000000480 INF: FPGA: Recv YRDPOS 149866
17-03-17 22:22:36.058 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 5 ms to get response, and 6 ms overall
17-03-17 22:22:36.058 -07 000000482 INF: Y Motor: Encoder = 149866 = motor step 117082.8 = 73.1768 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:22:36.058 -07 000000482 INF: Y Motor: Position error before settling (table move) = -32 encoder counts (-0.016 mm)
17-03-17 22:22:36.058 -07 000000482 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.842 mm, average velocity = 2.121 mm/sec
17-03-17 22:22:36.968 -07 000000458 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:22:36.968 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 61. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=992, R2=1018, Total=2010. Warn if over 250 bubbles per interval.
17-03-17 22:22:37.008 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:22:37.008 -07 000000458 INF: FPGA: Recv YRDPOS 149866
17-03-17 22:22:37.018 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:37.018 -07 000000482 INF: Y Motor: Encoder = 149866 = motor step 117082.8 = 73.1768 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:22:37.038 -07 000000482 INF: Y Motor: After move to 73.192604, error = -0.015846, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:22:37.038 -07 000000482 INF: Y Motor: Position error after settling (table move) = -32 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:22:37.038 -07 000000482 INF: Y Motor: Moved to 73.1768 after 1426 ms (table move)
17-03-17 22:22:37.038 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.129320 mm (DAC = 28250)
17-03-17 22:22:37.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:37.048 -07 000000569 INF: FPGA: Recv ZSGSRD 29424
17-03-17 22:22:37.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 22:22:37.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:37.048 -07 000000569 INF: FPGA: Recv ZSGSRD 29420
17-03-17 22:22:37.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:22:37.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:37.058 -07 000000458 INF: FPGA: Recv ZSGSRD 29422
17-03-17 22:22:37.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:37.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:37.068 -07 000000486 INF: FPGA: Recv ZSGSRD 29420
17-03-17 22:22:37.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:37.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:37.078 -07 000000569 INF: FPGA: Recv ZSGSRD 29419
17-03-17 22:22:37.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:37.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:37.088 -07 000000458 INF: FPGA: Recv ZSGSRD 29426
17-03-17 22:22:37.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:37.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:37.098 -07 000000486 INF: FPGA: Recv ZSGSRD 29425
17-03-17 22:22:37.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:37.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:37.108 -07 000000486 INF: FPGA: Recv ZSGSRD 29422
17-03-17 22:22:37.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:37.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:37.118 -07 000000486 INF: FPGA: Recv ZSGSRD 29414
17-03-17 22:22:37.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:37.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:37.128 -07 000000501 INF: FPGA: Recv ZSGSRD 29415
17-03-17 22:22:37.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:37.138 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:22:37.138 -07 000000482 INF: FPGA: Recv ZPIEZORD 25151
17-03-17 22:22:37.148 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:37.148 -07 000000610 INF: Z Motor: Piezo is near 33.7 V (nominally 0 to 100 V), expect near 43.1 V, since DAC is at 4.311 V. Piezo Error = -9.4 V.
17-03-17 22:22:37.148 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.3 um, Read 10 ADC samples: Avg = 29421 (-128.6 uncal um), Error = 0.8 uncal um, Median = 29421 (-128.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29414 (-128.5 uncal um), Max = 29426 (-128.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 22:22:37.148 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29421, posNoise = 5, negNoise = 7
17-03-17 22:22:37.148 -07 000000610 INF: Z Motor: After move to -0.129320, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:22:37.148 -07 000000610 INF: Z Motor: Settle wait time = 1430 ms, measure time = 103 ms (allowed 150 ms), total time = 1533 ms
17-03-17 22:22:37.148 -07 000000610 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 22:22:37.198 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1584 ms
17-03-17 22:22:37.198 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:22:37.198 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.1767578125, Z-position -0.129330097433884. ----------
17-03-17 22:22:37.198 -07 000000610 INF: Cycle	62	Tile	17	Exposure Settings		A	450	G	216	T	216	C	450
17-03-17 22:22:37.198 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28073, sync = True, waitForSettling = True)
17-03-17 22:22:37.198 -07 000000610 INF: Z Motor: Moving to -0.128510 mm, started at -0.129330 mm, distance = 0.82 um
17-03-17 22:22:37.198 -07 000000610 INF: FPGA: Xmit ZDACW 28073\n [Z Motor]
17-03-17 22:22:37.198 -07 000000480 INF: FPGA: Recv ZDACW
17-03-17 22:22:37.208 -07 000000610 INF: FPGA: 'ZDACW 28073' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 22:22:37.208 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:22:37.208 -07 000000480 INF: FPGA: Recv ZDACR 28073
17-03-17 22:22:37.218 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:37.218 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:22:37.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:37.368 -07 000000458 INF: FPGA: Recv ZSGSRD 29292
17-03-17 22:22:37.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:22:37.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:37.378 -07 000000458 INF: FPGA: Recv ZSGSRD 29292
17-03-17 22:22:37.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:37.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:37.388 -07 000000482 INF: FPGA: Recv ZSGSRD 29297
17-03-17 22:22:37.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:37.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:37.398 -07 000000569 INF: FPGA: Recv ZSGSRD 29291
17-03-17 22:22:37.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:37.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:37.408 -07 000000459 INF: FPGA: Recv ZSGSRD 29292
17-03-17 22:22:37.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:37.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:37.418 -07 000000561 INF: FPGA: Recv ZSGSRD 29302
17-03-17 22:22:37.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:37.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:37.428 -07 000000561 INF: FPGA: Recv ZSGSRD 29295
17-03-17 22:22:37.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:37.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:37.438 -07 000000561 INF: FPGA: Recv ZSGSRD 29294
17-03-17 22:22:37.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:37.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:37.448 -07 000000501 INF: FPGA: Recv ZSGSRD 29288
17-03-17 22:22:37.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:37.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:37.458 -07 000000382 INF: FPGA: Recv ZSGSRD 29293
17-03-17 22:22:37.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:37.468 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:22:37.468 -07 000000382 INF: FPGA: Recv ZPIEZORD 24990
17-03-17 22:22:37.478 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:37.478 -07 000000610 INF: Z Motor: Piezo is near 33.4 V (nominally 0 to 100 V), expect near 42.8 V, since DAC is at 4.284 V. Piezo Error = -9.5 V.
17-03-17 22:22:37.478 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.5 um, Read 10 ADC samples: Avg = 29294 (-127.7 uncal um), Error = 0.8 uncal um, Median = 29292 (-127.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 29288 (-127.7 uncal um), Max = 29302 (-127.8 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 22:22:37.478 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29294, posNoise = 8, negNoise = 6
17-03-17 22:22:37.478 -07 000000610 INF: Z Motor: After move to -0.128510, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:22:37.478 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 22:22:37.478 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:22:37.478 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:22:37.478 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:22:37.478 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:22:37.478 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:22:37.478 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:22:37.478 -07 000000486 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:22:37.478 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:22:37.478 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:22:37.478 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:22:37.478 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:22:37.478 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:22:37.488 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:22:37.488 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:22:37.488 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 22:22:37.488 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:22:37.498 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-17 22:22:37.498 -07 000000486 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 22:22:37.498 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 22:22:37.498 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 22:22:37.498 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 450 450 216 216 28250 150\n [Camera]
17-03-17 22:22:37.698 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:22:38.148 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 642
17-03-17 22:22:38.148 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 642
17-03-17 22:22:38.148 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:22:38.148 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:22:38.148 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 1476890328, 0x0, 391868352) start.
17-03-17 22:22:38.158 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 642
17-03-17 22:22:38.158 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 642
17-03-17 22:22:38.158 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:22:38.158 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:22:38.158 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-17 22:22:38.348 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28250 835
17-03-17 22:22:38.498 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning grn on 985
17-03-17 22:22:38.538 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 1476890328, 0x0, 391868352) end. Duration was 384 ms.
17-03-17 22:22:38.538 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 22:22:38.538 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:22:38.538 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 22:22:38.538 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 22:22:38.538 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:22:38.538 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:22:38.538 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 22:22:38.538 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 22:22:38.548 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 22:22:38.708 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1201
17-03-17 22:22:38.708 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1201
17-03-17 22:22:38.708 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:22:38.708 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:22:38.708 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start.
17-03-17 22:22:38.718 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1201
17-03-17 22:22:38.718 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1201
17-03-17 22:22:38.718 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:22:38.838 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:22:38.838 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-17 22:22:38.898 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP 1393
17-03-17 22:22:38.898 -07 000000458 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:22:38.898 -07 000000610 INF: FPGA: 'CAMDBLSNAP 450 450 216 216 28250 150' command took 2 ms to send, 1389 ms to get response, and 1400 ms overall
17-03-17 22:22:38.908 -07 000000610 INF: Skipping AutoFocus in Tile 18: adopting Best-Z from the cache: -0.128823
17-03-17 22:22:38.908 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.12882 mm
17-03-17 22:22:38.908 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:22:38.908 -07 000000501 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-17 22:22:38.908 -07 000000501 INF: Y Motor: Moving to 74.0226 mm, started at 73.1768 mm, delta = 0.8458 mm
17-03-17 22:22:38.908 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:22:38.908 -07 000000438 INF: Z Motor: Entering MoveAbsStepped (DAC = 28141, sync = True, waitForSettling = False)
17-03-17 22:22:38.908 -07 000000438 INF: Z Motor: Moving to -0.128821 mm, started at -0.128514 mm, distance = -0.31 um
17-03-17 22:22:38.908 -07 000000458 INF: FPGA: Recv YRDPOS 149866
17-03-17 22:22:38.918 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:22:38.918 -07 000000438 INF: FPGA: Xmit ZDACW 28141\n [Z Motor]
17-03-17 22:22:38.918 -07 000000501 INF: Y Motor: Encoder = 149866 = motor step 117082.8 = 73.1768 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:22:38.918 -07 000000501 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:22:38.918 -07 000000501 INF: Y Motor: Moving 1353 steps-32
17-03-17 22:22:38.928 -07 000000501 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:22:39.098 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 388 ms.
17-03-17 22:22:39.098 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 22:22:39.098 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:22:39.108 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:22:39.108 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 22:22:39.118 -07 000000382 INF: FPGA: Recv ZDACW
17-03-17 22:22:39.118 -07 000000438 INF: FPGA: 'ZDACW 28141' command took 0 ms to send, 193 ms to get response, and 208 ms overall
17-03-17 22:22:39.118 -07 000000438 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:22:39.118 -07 000000382 INF: FPGA: Recv ZDACR 28141
17-03-17 22:22:39.128 -07 000000438 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:22:39.128 -07 000000438 INF: Z Motor: MoveAbsStepped took 215 ms (did NOT wait for settling yet))
17-03-17 22:22:39.208 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 22:22:39.218 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 22:22:39.218 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:22:39.218 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:22:39.218 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 508 ms.
17-03-17 22:22:39.298 -07 000000382 INF: FPGA: Recv YMVTILE
17-03-17 22:22:39.298 -07 000000501 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 388 ms overall
17-03-17 22:22:39.338 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:22:39.338 -07 000000438 INF: FPGA: Recv YRDPOS 151570
17-03-17 22:22:39.348 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:22:39.348 -07 000000501 INF: Y Motor: Encoder = 151570 = motor step 118414.1 = 74.0088 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:22:39.348 -07 000000501 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 22:22:39.348 -07 000000501 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.846 mm, average velocity = 2.180 mm/sec
17-03-17 22:22:40.038 -07 000000438 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 62, FrontChillerTemperature: 3.989471,
17-03-17 22:22:40.298 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:22:40.298 -07 000000382 INF: FPGA: Recv YRDPOS 151570
17-03-17 22:22:40.308 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:22:40.308 -07 000000501 INF: Y Motor: Encoder = 151570 = motor step 118414.1 = 74.0088 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:22:40.318 -07 000000501 INF: Y Motor: After move to 74.022606, error = -0.013817, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:22:40.318 -07 000000501 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:22:40.318 -07 000000501 INF: Y Motor: Moved to 74.0088 after 1414 ms (table move)
17-03-17 22:22:40.328 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.128821 mm (DAC = 28141)
17-03-17 22:22:40.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:40.328 -07 000000459 INF: FPGA: Recv ZSGSRD 29346
17-03-17 22:22:40.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:22:40.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:40.338 -07 000000438 INF: FPGA: Recv ZSGSRD 29339
17-03-17 22:22:40.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:40.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:40.358 -07 000000382 INF: FPGA: Recv ZSGSRD 29334
17-03-17 22:22:40.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:22:40.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:40.368 -07 000000501 INF: FPGA: Recv ZSGSRD 29343
17-03-17 22:22:40.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:40.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:40.388 -07 000000438 INF: FPGA: Recv ZSGSRD 29341
17-03-17 22:22:40.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:22:40.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:40.398 -07 000000438 INF: FPGA: Recv ZSGSRD 29335
17-03-17 22:22:40.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:40.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:40.428 -07 000000459 INF: FPGA: Recv ZSGSRD 29345
17-03-17 22:22:40.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:22:40.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:40.448 -07 000000501 INF: FPGA: Recv ZSGSRD 29344
17-03-17 22:22:40.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:22:40.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:40.458 -07 000000438 INF: FPGA: Recv ZSGSRD 29340
17-03-17 22:22:40.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:40.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:40.468 -07 000000501 INF: FPGA: Recv ZSGSRD 29339
17-03-17 22:22:40.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:40.478 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:22:40.478 -07 000000438 INF: FPGA: Recv ZPIEZORD 25078
17-03-17 22:22:40.488 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:40.488 -07 000000610 INF: Z Motor: Piezo is near 33.6 V (nominally 0 to 100 V), expect near 42.9 V, since DAC is at 4.294 V. Piezo Error = -9.4 V.
17-03-17 22:22:40.488 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.8 um, Read 10 ADC samples: Avg = 29341 (-128.0 uncal um), Error = 0.8 uncal um, Median = 29340 (-128.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29334 (-128.0 uncal um), Max = 29346 (-128.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 22:22:40.488 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29341, posNoise = 5, negNoise = 7
17-03-17 22:22:40.488 -07 000000610 INF: Z Motor: After move to -0.128821, error = 0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:22:40.488 -07 000000610 INF: Z Motor: Settle wait time = 1416 ms, measure time = 159 ms (allowed 150 ms), total time = 1575 ms
17-03-17 22:22:40.488 -07 000000610 INF: Z Motor: Warning: Actual position measuring time = 159 ms, longer than max expected time of 150 ms
17-03-17 22:22:40.488 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1579 ms
17-03-17 22:22:40.488 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:22:40.488 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.0087890625, Z-position -0.128816160462543. ----------
17-03-17 22:22:40.488 -07 000000610 INF: Cycle	62	Tile	18	Exposure Settings		A	450	G	216	T	216	C	450
17-03-17 22:22:40.488 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27965, sync = True, waitForSettling = True)
17-03-17 22:22:40.488 -07 000000610 INF: Z Motor: Moving to -0.128016 mm, started at -0.128816 mm, distance = 0.80 um
17-03-17 22:22:40.488 -07 000000610 INF: FPGA: Xmit ZDACW 27965\n [Z Motor]
17-03-17 22:22:40.488 -07 000000438 INF: FPGA: Recv ZDACW
17-03-17 22:22:40.498 -07 000000610 INF: FPGA: 'ZDACW 27965' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 22:22:40.498 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:22:40.498 -07 000000382 INF: FPGA: Recv ZDACR 27965
17-03-17 22:22:40.508 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:40.508 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:22:40.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:40.658 -07 000000438 INF: FPGA: Recv ZSGSRD 29218
17-03-17 22:22:40.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:22:40.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:40.668 -07 000000382 INF: FPGA: Recv ZSGSRD 29218
17-03-17 22:22:40.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:40.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:40.678 -07 000000438 INF: FPGA: Recv ZSGSRD 29215
17-03-17 22:22:40.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:40.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:40.688 -07 000000438 INF: FPGA: Recv ZSGSRD 29218
17-03-17 22:22:40.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:40.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:40.698 -07 000000438 INF: FPGA: Recv ZSGSRD 29214
17-03-17 22:22:40.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:40.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:40.708 -07 000000438 INF: FPGA: Recv ZSGSRD 29218
17-03-17 22:22:40.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:40.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:40.718 -07 000000438 INF: FPGA: Recv ZSGSRD 29221
17-03-17 22:22:40.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:40.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:40.728 -07 000000438 INF: FPGA: Recv ZSGSRD 29214
17-03-17 22:22:40.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:40.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:40.738 -07 000000438 INF: FPGA: Recv ZSGSRD 29216
17-03-17 22:22:40.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:40.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:40.748 -07 000000438 INF: FPGA: Recv ZSGSRD 29219
17-03-17 22:22:40.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:40.758 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:22:40.758 -07 000000438 INF: FPGA: Recv ZPIEZORD 24902
17-03-17 22:22:40.768 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:40.768 -07 000000610 INF: Z Motor: Piezo is near 33.2 V (nominally 0 to 100 V), expect near 42.7 V, since DAC is at 4.267 V. Piezo Error = -9.5 V.
17-03-17 22:22:40.768 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.0 um, Read 10 ADC samples: Avg = 29217 (-127.2 uncal um), Error = 0.8 uncal um, Median = 29218 (-127.3 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 29214 (-127.2 uncal um), Max = 29221 (-127.3 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 22:22:40.768 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29217, posNoise = 4, negNoise = 3
17-03-17 22:22:40.768 -07 000000610 INF: Z Motor: After move to -0.128016, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:22:40.768 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-17 22:22:40.768 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:22:40.768 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:22:40.768 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:22:40.768 -07 000000551 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:22:40.768 -07 000000459 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:22:40.768 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:22:40.768 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:22:40.768 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:22:40.768 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:22:40.768 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:22:40.768 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:22:40.768 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:22:40.768 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 22:22:40.768 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:22:40.768 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:22:40.778 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:22:40.788 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-17 22:22:40.788 -07 000000459 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 18 ms.
17-03-17 22:22:40.788 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 22:22:40.788 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 22:22:40.788 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 450 450 216 216 28141 150\n [Camera]
17-03-17 22:22:40.988 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:22:41.438 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 642
17-03-17 22:22:41.438 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 642
17-03-17 22:22:41.438 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:22:41.438 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:22:41.438 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 22:22:41.448 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 642
17-03-17 22:22:41.448 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 642
17-03-17 22:22:41.448 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:22:41.448 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:22:41.448 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) start.
17-03-17 22:22:41.638 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28141 835
17-03-17 22:22:41.778 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP turning grn on 985
17-03-17 22:22:41.818 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) end. Duration was 373 ms.
17-03-17 22:22:41.818 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-17 22:22:41.818 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:22:41.818 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 22:22:41.818 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 22:22:41.818 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:22:41.828 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:22:41.828 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:22:41.828 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 22:22:41.828 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-17 22:22:41.968 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:22:41.968 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 61. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=992, R2=1018, Total=2010. Warn if over 250 bubbles per interval.
17-03-17 22:22:41.998 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1201
17-03-17 22:22:41.998 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1201
17-03-17 22:22:41.998 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:22:41.998 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:22:41.998 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1476890328, 0x0, 391868352) start.
17-03-17 22:22:41.998 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1201
17-03-17 22:22:41.998 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1201
17-03-17 22:22:42.008 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:22:42.008 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:22:42.008 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) start.
17-03-17 22:22:42.188 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP 1393
17-03-17 22:22:42.188 -07 000000501 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:22:42.188 -07 000000610 INF: FPGA: 'CAMDBLSNAP 450 450 216 216 28141 150' command took 2 ms to send, 1388 ms to get response, and 1400 ms overall
17-03-17 22:22:42.198 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 22:22:42.198 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.0087890625, Z-Position -0.128019558156965. ------
17-03-17 22:22:42.198 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:22:42.198 -07 000000438 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.13448 mm
17-03-17 22:22:42.198 -07 000000438 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:22:42.198 -07 000000448 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-17 22:22:42.198 -07 000000448 INF: Y Motor: Moving to 74.8526 mm, started at 74.0088 mm, delta = 0.8438 mm
17-03-17 22:22:42.198 -07 000000501 INF: Z Motor: Entering MoveAbsStepped (DAC = 29376, sync = True, waitForSettling = False)
17-03-17 22:22:42.198 -07 000000501 INF: Z Motor: Moving to -0.134475 mm, started at -0.128020 mm, distance = -6.46 um
17-03-17 22:22:42.198 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:22:42.208 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:22:42.208 -07 000000501 INF: FPGA: Xmit ZDACW 29376\n [Z Motor]
17-03-17 22:22:42.208 -07 000000382 INF: FPGA: Recv ZDACW
17-03-17 22:22:42.218 -07 000000501 INF: FPGA: 'ZDACW 29376' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 22:22:42.218 -07 000000448 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:22:42.218 -07 000000618 INF: FPGA: Recv YRDPOS 151571
17-03-17 22:22:42.228 -07 000000424 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:22:42.228 -07 000000448 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-17 22:22:42.228 -07 000000448 INF: Y Motor: Encoder = 151571 = motor step 118414.8 = 74.0093 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:22:42.228 -07 000000448 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:22:42.238 -07 000000501 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:22:42.238 -07 000000448 INF: Y Motor: Moving 1349 steps-28
17-03-17 22:22:42.238 -07 000000382 INF: FPGA: Recv ZDACR 29376
17-03-17 22:22:42.248 -07 000000448 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:22:42.248 -07 000000501 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:22:42.248 -07 000000501 INF: Z Motor: MoveAbsStepped took 42 ms (did NOT wait for settling yet))
17-03-17 22:22:42.378 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1476890328, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 22:22:42.378 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 22:22:42.378 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:22:42.388 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 22:22:42.388 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 22:22:42.388 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:22:42.388 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:22:42.388 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 22:22:42.388 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:22:42.398 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 22:22:42.428 -07 000000618 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:22:42.428 -07 000000424 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 22:22:42.618 -07 000000502 INF: FPGA: Recv YMVTILE
17-03-17 22:22:42.618 -07 000000448 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-17 22:22:42.648 -07 000000448 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:22:42.648 -07 000000382 INF: FPGA: Recv YRDPOS 153258
17-03-17 22:22:42.658 -07 000000448 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:22:42.658 -07 000000448 INF: Y Motor: Encoder = 153258 = motor step 119732.8 = 74.8330 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:22:42.658 -07 000000448 INF: Y Motor: Position error before settling (table move) = -40 encoder counts (-0.020 mm)
17-03-17 22:22:42.658 -07 000000448 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.844 mm, average velocity = 2.175 mm/sec
17-03-17 22:22:43.608 -07 000000448 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:22:43.608 -07 000000462 INF: FPGA: Recv YRDPOS 153258
17-03-17 22:22:43.618 -07 000000448 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:22:43.618 -07 000000448 INF: Y Motor: Encoder = 153258 = motor step 119732.8 = 74.8330 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:22:43.628 -07 000000448 INF: Y Motor: After move to 74.852608, error = -0.019600, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:22:43.628 -07 000000448 INF: Y Motor: Position error after settling (table move) = -40 encoder counts (-0.020 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:22:43.628 -07 000000448 INF: Y Motor: Moved to 74.8330 after 1430 ms (table move)
17-03-17 22:22:43.638 -07 000000438 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134475 mm (DAC = 29376)
17-03-17 22:22:43.638 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:43.638 -07 000000424 INF: FPGA: Recv ZSGSRD 30234
17-03-17 22:22:43.648 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:22:43.648 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:43.648 -07 000000382 INF: FPGA: Recv ZSGSRD 30226
17-03-17 22:22:43.658 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:43.658 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:43.658 -07 000000618 INF: FPGA: Recv ZSGSRD 30223
17-03-17 22:22:43.668 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:43.668 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:43.668 -07 000000462 INF: FPGA: Recv ZSGSRD 30215
17-03-17 22:22:43.678 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:43.678 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:43.678 -07 000000576 INF: FPGA: Recv ZSGSRD 30217
17-03-17 22:22:43.688 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:43.688 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:43.688 -07 000000576 INF: FPGA: Recv ZSGSRD 30226
17-03-17 22:22:43.698 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:43.698 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:43.698 -07 000000576 INF: FPGA: Recv ZSGSRD 30231
17-03-17 22:22:43.708 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:43.708 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:43.708 -07 000000462 INF: FPGA: Recv ZSGSRD 30221
17-03-17 22:22:43.718 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:43.718 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:43.718 -07 000000462 INF: FPGA: Recv ZSGSRD 30224
17-03-17 22:22:43.728 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:43.728 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:43.728 -07 000000576 INF: FPGA: Recv ZSGSRD 30223
17-03-17 22:22:43.738 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:43.738 -07 000000438 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:22:43.738 -07 000000382 INF: FPGA: Recv ZPIEZORD 26241
17-03-17 22:22:43.748 -07 000000438 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:43.748 -07 000000438 INF: Z Motor: Piezo is near 36.1 V (nominally 0 to 100 V), expect near 44.8 V, since DAC is at 4.482 V. Piezo Error = -8.8 V.
17-03-17 22:22:43.748 -07 000000438 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.5 um, Read 10 ADC samples: Avg = 30224 (-133.7 uncal um), Error = 0.8 uncal um, Median = 30224 (-133.7 uncal um), StdDev = 6 (0.0 uncal um), Range = 19 (0.1 uncal um), Min = 30215 (-133.6 uncal um), Max = 30234 (-133.8 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 22:22:43.748 -07 000000438 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30224, posNoise = 10, negNoise = 9
17-03-17 22:22:43.748 -07 000000438 INF: Z Motor: After move to -0.134475, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:22:43.748 -07 000000438 INF: Z Motor: Settle wait time = 1434 ms, measure time = 109 ms (allowed 150 ms), total time = 1543 ms
17-03-17 22:22:43.748 -07 000000438 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-17 22:22:43.798 -07 000000438 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1596 ms
17-03-17 22:22:43.798 -07 000000438 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:22:43.798 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:22:43.798 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:22:43.798 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:22:43.798 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:22:43.798 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:22:43.798 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:22:43.808 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:22:43.808 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:22:43.808 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 22:22:43.808 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:22:43.818 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 22:22:43.818 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 20 ms.
17-03-17 22:22:43.818 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:22:43.868 -07 000000382 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:22:44.068 -07 000000382 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:22:44.068 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:22:44.068 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:22:44.068 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 22:22:44.108 -07 000000576 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:22:44.108 -07 000000382 INF: FPGA: Recv CAMSNAP
17-03-17 22:22:44.108 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 274 ms to get response, and 284 ms overall
17-03-17 22:22:44.198 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 22:22:44.198 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:22:44.198 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:22:44.198 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 22:22:44.208 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:22:44.208 -07 000000462 INF: Autofocus start
17-03-17 22:22:44.208 -07 000000462 INF: MeasureProfile start
17-03-17 22:22:44.208 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:22:44.218 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 22:22:44.218 -07 000000382 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:22:44.218 -07 000000462 INF: MeasureProfile done
17-03-17 22:22:44.218 -07 000000462 INF: X=48  Z correction [um]=0.2069503
17-03-17 22:22:44.218 -07 000000462 INF: Autofocus finished
17-03-17 22:22:44.418 -07 000000438 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:22:44.418 -07 000000382 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:22:44.418 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.8330078125, Z-position -0.134488739783718. ----------
17-03-17 22:22:44.418 -07 000000610 INF: Cycle	62	Tile	19	Exposure Settings		A	450	G	216	T	216	C	450
17-03-17 22:22:44.428 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27934, sync = True, waitForSettling = True)
17-03-17 22:22:44.428 -07 000000610 INF: Z Motor: Moving to -0.127874 mm, started at -0.134489 mm, distance = 6.62 um
17-03-17 22:22:44.428 -07 000000610 INF: FPGA: Xmit ZDACW 27934\n [Z Motor]
17-03-17 22:22:44.428 -07 000000462 INF: FPGA: Recv ZDACW
17-03-17 22:22:44.438 -07 000000610 INF: FPGA: 'ZDACW 27934' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:22:44.438 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:22:44.438 -07 000000576 INF: FPGA: Recv ZDACR 27934
17-03-17 22:22:44.448 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:44.448 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:22:44.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:44.598 -07 000000462 INF: FPGA: Recv ZSGSRD 29194
17-03-17 22:22:44.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:22:44.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:44.608 -07 000000576 INF: FPGA: Recv ZSGSRD 29194
17-03-17 22:22:44.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:44.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:44.618 -07 000000382 INF: FPGA: Recv ZSGSRD 29194
17-03-17 22:22:44.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:44.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:44.628 -07 000000382 INF: FPGA: Recv ZSGSRD 29195
17-03-17 22:22:44.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:44.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:44.638 -07 000000438 INF: FPGA: Recv ZSGSRD 29193
17-03-17 22:22:44.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:44.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:44.648 -07 000000576 INF: FPGA: Recv ZSGSRD 29196
17-03-17 22:22:44.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:44.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:44.658 -07 000000576 INF: FPGA: Recv ZSGSRD 29197
17-03-17 22:22:44.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:44.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:44.668 -07 000000382 INF: FPGA: Recv ZSGSRD 29193
17-03-17 22:22:44.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:44.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:44.678 -07 000000576 INF: FPGA: Recv ZSGSRD 29195
17-03-17 22:22:44.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:44.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:22:44.688 -07 000000576 INF: FPGA: Recv ZSGSRD 29192
17-03-17 22:22:44.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:44.698 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:22:44.698 -07 000000438 INF: FPGA: Recv ZPIEZORD 24888
17-03-17 22:22:44.708 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:44.708 -07 000000610 INF: Z Motor: Piezo is near 33.2 V (nominally 0 to 100 V), expect near 42.6 V, since DAC is at 4.262 V. Piezo Error = -9.5 V.
17-03-17 22:22:44.708 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.9 um, Read 10 ADC samples: Avg = 29194 (-127.1 uncal um), Error = 0.8 uncal um, Median = 29194 (-127.1 uncal um), StdDev = 1 (0.0 uncal um), Range = 5 (0.0 uncal um), Min = 29192 (-127.1 uncal um), Max = 29197 (-127.1 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 2 (0.0 uncal um)
17-03-17 22:22:44.708 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29194, posNoise = 3, negNoise = 2
17-03-17 22:22:44.708 -07 000000610 INF: Z Motor: After move to -0.127874, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:22:44.708 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 22:22:44.708 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:22:44.708 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:22:44.708 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:22:44.708 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:22:44.708 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:22:44.708 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:22:44.708 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:22:44.708 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:22:44.718 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 22:22:44.718 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:22:44.718 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:22:44.718 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:22:44.718 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 22:22:44.718 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:22:44.718 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:22:44.718 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:22:44.728 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 22:22:44.728 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 12 ms.
17-03-17 22:22:44.728 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 22:22:44.728 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 22:22:44.728 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 450 450 216 216 28111 150\n [Camera]
17-03-17 22:22:44.928 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:22:45.378 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 642
17-03-17 22:22:45.378 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 642
17-03-17 22:22:45.378 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:22:45.378 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:22:45.378 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 22:22:45.378 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 642
17-03-17 22:22:45.378 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 642
17-03-17 22:22:45.378 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:22:45.378 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:22:45.378 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 22:22:45.408 -07 000000438 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 62, FrontChillerTemperature: 3.999021,
17-03-17 22:22:45.568 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28111 835
17-03-17 22:22:45.718 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP turning grn on 985
17-03-17 22:22:45.768 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 390 ms.
17-03-17 22:22:45.768 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 22:22:45.768 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:22:45.778 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 392 ms.
17-03-17 22:22:45.778 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 22:22:45.778 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:22:45.778 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 22:22:45.778 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 22:22:45.778 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:22:45.788 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-17 22:22:45.938 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1205
17-03-17 22:22:45.938 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1205
17-03-17 22:22:45.938 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:22:45.948 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:22:45.948 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-17 22:22:45.948 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1205
17-03-17 22:22:45.948 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1205
17-03-17 22:22:45.948 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:22:45.948 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:22:45.948 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 22:22:46.128 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP 1394
17-03-17 22:22:46.128 -07 000000561 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:22:46.128 -07 000000610 INF: FPGA: 'CAMDBLSNAP 450 450 216 216 28111 150' command took 2 ms to send, 1395 ms to get response, and 1400 ms overall
17-03-17 22:22:46.338 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 390 ms.
17-03-17 22:22:46.338 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 22:22:46.338 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:22:46.338 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 392 ms.
17-03-17 22:22:46.338 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 22:22:46.338 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:22:46.338 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:22:46.338 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:22:46.338 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 22:22:46.338 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-17 22:22:46.348 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 22:22:46.388 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 42 ms.
17-03-17 22:22:46.388 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-17 22:22:46.428 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 42 ms.
17-03-17 22:22:46.558 -07 000000610 INF: Enabling Skipping AutoFocus in the next 0 cycles.
17-03-17 22:22:46.558 -07 000000610 INF: Imaging Cycle 62: ScanTilesCommand Cycle 62 time end. Duration was 153922 ms.
17-03-17 22:22:46.558 -07 000000610 INF: =================== Cycle #62 ===================
17-03-17 22:22:46.558 -07 000000610 INF: ===================  ===================
17-03-17 22:22:46.558 -07 000000561 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-17 22:22:46.558 -07 000000458 INF: FPGA: Recv EXLED1ADCR 24
17-03-17 22:22:46.568 -07 000000561 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:22:46.568 -07 000000561 INF: GreenLED: Using Green data: Photodiode ADC 24 --> 0.0 mW (old method), or 1.7 mW (new method). Difference = 1.7 mW
17-03-17 22:22:46.568 -07 000000561 INF: Predictive Diagnostic Log Cycle Entry Metrics: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 62, FrontChillerTemperature: 3.999021, FrontChillerHeatSinkTemperature: 0.305449, AmbientTemperature: 18.94838, FlowCellCompartmentTemperature: 21.99544, FlowCellTargetTemperature: 22, FlowCellHeatSinkTemperature: 18.73633, GreenLEDSensorTemperature: 25.37112, PhotodiodePowerAdcGreen: 24, PhotodiodePowerMwGreen: 1.744678
17-03-17 22:22:46.608 -07 000000610 INF: Y-Drift Offset assigned 0.002126916.