17-03-17 22:22:46.658 -07 000000610 INF: =================== Cycle #63 ===================
17-03-17 22:22:46.668 -07 000000610 INF: Y Motor: Entering MoveAbsStepped (target = 120609 steps, sync = True, waitForSettling = True)
17-03-17 22:22:46.668 -07 000000610 INF: Y Motor: Moving to 75.3806 mm, started at 74.8330 mm, delta = 0.5476 mm
17-03-17 22:22:46.668 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:22:46.668 -07 000000561 INF: FPGA: Recv YRDPOS 153259
17-03-17 22:22:46.678 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:22:46.678 -07 000000610 INF: Y Motor: Encoder = 153259 = motor step 119733.6 = 74.8335 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:22:46.678 -07 000000610 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = 0.5280 mm (844.8 steps). UsingTableMove = False
17-03-17 22:22:46.678 -07 000000610 INF: Y Motor: Moving to 154379 encoder counts
17-03-17 22:22:46.678 -07 000000610 INF: FPGA: Xmit YMVTO 154379\n [Y Motor]
17-03-17 22:22:46.788 -07 000000458 INF: FPGA: Recv YMVTO 154377 870
17-03-17 22:22:46.788 -07 000000610 INF: FPGA: 'YMVTO 154379' command took 0 ms to send, 109 ms to get response, and 116 ms overall
17-03-17 22:22:46.788 -07 000000610 INF: Y Motor: Position error before settling = -2 encoder counts (-0.001 mm)
17-03-17 22:22:46.798 -07 000000610 INF: Y Motor: To move from 74.833 to 75.381 (0.548 mm) should take 875 steps, but required 870 steps (0.544 mm). Slippage = -0.003 mm (-0.01%).
17-03-17 22:22:46.798 -07 000000610 INF: Y Motor: FPGA move command 'YMVTO 154379' took 116 ms, distance = 0.548 mm, average velocity = 4.720 mm/sec
17-03-17 22:22:46.968 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:22:46.968 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 62. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=992, R2=1018, Total=2010. Warn if over 250 bubbles per interval.
17-03-17 22:22:49.798 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:22:49.798 -07 000000382 INF: FPGA: Recv YRDPOS 154379
17-03-17 22:22:49.808 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:22:49.808 -07 000000610 INF: Y Motor: Encoder = 154379 = motor step 120608.6 = 75.3804 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:22:49.828 -07 000000610 INF: Y Motor: After move to 75.380580, error = -0.000209, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:22:49.828 -07 000000610 INF: Y Motor: Position error after settling = 0 encoder counts (0.000 mm), Delta during settling = 2 counts (0.001 mm)
17-03-17 22:22:49.828 -07 000000610 INF: Y Motor: Moved to 75.3804 after 3161 ms
17-03-17 22:22:49.828 -07 000000610 INF: =================== Cycle #63, Flow Cell Temp 60° ===================
17-03-17 22:22:49.838 -07 000000610 INF: =================== Cycle #63, Flow Cell Temp 60°, FC temperature to 60° ===================
17-03-17 22:22:49.838 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 60000000\n [FlowCellTempControl]
17-03-17 22:22:49.838 -07 000000458 INF: FPGA: Recv TEC2TEMP 
17-03-17 22:22:49.848 -07 000000610 INF: FPGA: 'TEC2TEMP 0 60000000' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:49.848 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 22:22:49.848 -07 000000458 INF: FPGA: Recv TEC2EN 
17-03-17 22:22:49.858 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:22:49.858 -07 000000610 INF: =================== Cycle #63, Flow Cell Temp 60° ===================
17-03-17 22:22:49.858 -07 000000610 INF: =================== Cycle #63 ===================
17-03-17 22:22:49.858 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 22:22:49.858 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 22:22:49.888 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-17 22:22:49.888 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 24 to 3. Moving 3 positions.
17-03-17 22:22:49.888 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 22:22:50.188 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 22:22:50.208 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-17 22:22:50.208 -07 000000610 INF: ReagentValve: Move+ from 24 to 3 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-17 22:22:50.258 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 22:22:50.278 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 22:22:50.278 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 22:22:50.378 -07 000000610 INF: =================== Cycle #63, Pumping Reagent PR2 (3) ===================
17-03-17 22:22:50.378 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-17 22:22:50.378 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:22:50.408 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 22:22:50.408 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 22:22:50.408 -07 000000610 INF: =================== Cycle #63, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 22:22:50.538 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-17 22:22:50.578 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:22:50.768 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 63, FrontChillerTemperature: 3.990831,
17-03-17 22:22:51.968 -07 000000482 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:22:51.968 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 62. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=992, R2=1018, Total=2010. Warn if over 250 bubbles per interval.
17-03-17 22:22:53.708 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:22:53.738 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:22:54.158 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:22:54.188 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:22:54.608 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:22:54.638 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:22:54.638 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-17 22:22:54.638 -07 000000610 INF: =================== Cycle #63, Pumping Reagent PR2 (3) ===================
17-03-17 22:22:54.768 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:22:54.798 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 22:22:54.798 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 22:22:54.928 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:22:54.958 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 22:22:54.958 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 22:22:54.958 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 22:22:55.088 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 22:22:55.118 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:22:55.548 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:22:55.578 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:22:55.578 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 22:22:55.578 -07 000000610 INF: =================== Cycle #63 ===================
17-03-17 22:22:56.128 -07 000000561 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 63, FrontChillerTemperature: 4.020806,
17-03-17 22:22:56.798 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 22:22:56.798 -07 000000610 INF: ReagentValve: Go to position 4 - PumpToFlowcell start
17-03-17 22:22:56.798 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 22:22:56.818 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 22:22:56.818 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 3 to 4. Moving 1 positions.
17-03-17 22:22:56.818 -07 000000610 INF: ReagentValve: Xmit +04\r
17-03-17 22:22:56.948 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 22:22:56.968 -07 000000610 INF: ReagentValve: Recv 00CD\r
17-03-17 22:22:56.968 -07 000000610 INF: ReagentValve: Move+ from 3 to 4 took 205 steps, expected 204. Error = 1 steps (0.5%)
17-03-17 22:22:56.968 -07 000000482 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:22:56.968 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 62. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=992, R2=1018, Total=2010. Warn if over 250 bubbles per interval.
17-03-17 22:22:57.018 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 22:22:57.038 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-17 22:22:57.038 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 22:22:57.138 -07 000000610 INF: =================== Cycle #63, Pumping Reagent CMS (4) ===================
17-03-17 22:22:57.138 -07 000000610 INF: LanePump: Pumping from 4, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 22:22:57.138 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:22:57.168 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 22:22:57.168 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 22:22:57.168 -07 000000610 INF: =================== Cycle #63, Pumping Reagent CMS (4), Aspirating port InputPort ===================
17-03-17 22:22:57.298 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 22:22:57.338 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:22:58.778 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:22:58.808 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:22:59.228 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:22:59.258 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:22:59.258 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-17 22:22:59.258 -07 000000610 INF: =================== Cycle #63, Pumping Reagent CMS (4) ===================
17-03-17 22:22:59.388 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:22:59.418 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 22:22:59.418 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 22:22:59.548 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:22:59.578 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 22:22:59.578 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 22:22:59.578 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 22:22:59.708 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 22:22:59.738 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:23:00.168 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:23:00.198 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:23:00.198 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 22:23:00.198 -07 000000610 INF: =================== Cycle #63 ===================
17-03-17 22:23:01.418 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 22:23:01.418 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 22:23:01.418 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 22:23:01.438 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-17 22:23:01.438 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 4 to 3. Moving 1 positions.
17-03-17 22:23:01.438 -07 000000610 INF: ReagentValve: Xmit -03\r
17-03-17 22:23:01.488 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 63, FrontChillerTemperature: 4.011254,
17-03-17 22:23:01.588 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 22:23:01.608 -07 000000610 INF: ReagentValve: Recv 00E1\r
17-03-17 22:23:01.608 -07 000000610 INF: ReagentValve: Move- from 4 to 3 took 225 steps, expected 204. Error = 21 steps (10.3%)
17-03-17 22:23:01.658 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 22:23:01.678 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 22:23:01.678 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 22:23:01.778 -07 000000610 INF: =================== Cycle #63, Pumping Reagent PR2 (3) ===================
17-03-17 22:23:01.778 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 22:23:01.778 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:23:01.808 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 22:23:01.808 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 22:23:01.808 -07 000000610 INF: =================== Cycle #63, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 22:23:01.938 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 22:23:01.968 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 0
17-03-17 22:23:01.968 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 62. Bubbles during last 5000 ms interval: R1=0, R2=1, Total=1. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=992, R2=1019, Total=2011. Warn if over 250 bubbles per interval.
17-03-17 22:23:01.978 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:23:02.848 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:23:02.878 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:23:02.878 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-17 22:23:02.878 -07 000000610 INF: =================== Cycle #63, Pumping Reagent PR2 (3) ===================
17-03-17 22:23:03.008 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:23:03.038 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 22:23:03.038 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 22:23:03.168 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:23:03.198 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 22:23:03.198 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 22:23:03.198 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 22:23:03.328 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 22:23:03.358 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:23:03.788 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:23:03.818 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:23:03.818 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 22:23:03.818 -07 000000610 INF: =================== Cycle #63 ===================
17-03-17 22:23:03.818 -07 000000459 INF: WaitCommand(10000) start
17-03-17 22:23:03.818 -07 000000438 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 22:23:03.818 -07 000000438 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 22:23:05.038 -07 000000438 INF: AsyncDelayTimer waited 1216ms
17-03-17 22:23:05.038 -07 000000438 INF: LanePump: Xmit /1?\r
17-03-17 22:23:05.068 -07 000000438 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 22:23:05.068 -07 000000438 INF: LanePump: Current Position of Pump is: 1110
17-03-17 22:23:05.198 -07 000000438 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 22:23:05.238 -07 000000438 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:23:06.768 -07 000000438 INF: LanePump: Xmit /1Q\r
17-03-17 22:23:07.228 -07 000000448 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:23:07.228 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 62. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=992, R2=1019, Total=2011. Warn if over 250 bubbles per interval.
17-03-17 22:23:07.228 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 63, FrontChillerTemperature: 4.008536,
17-03-17 22:23:07.238 -07 000000438 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:23:07.658 -07 000000438 INF: LanePump: Xmit /1Q\r
17-03-17 22:23:07.688 -07 000000438 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:23:07.688 -07 000000438 INF: LanePump: Waited 2449 ms for pump motion to complete
17-03-17 22:23:07.688 -07 000000438 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 22:23:07.688 -07 000000438 INF: ===================  ===================
17-03-17 22:23:11.968 -07 000000448 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:23:11.968 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 62. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=992, R2=1019, Total=2011. Warn if over 250 bubbles per interval.
17-03-17 22:23:12.588 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 63, FrontChillerTemperature: 3.971733,
17-03-17 22:23:13.828 -07 000000459 INF: WaitCommand(10000) end
17-03-17 22:23:13.828 -07 000000610 INF: =================== Cycle #63, Pumping Reagent PR2 (3) ===================
17-03-17 22:23:13.828 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 250 µL, calling command Pumping to Flow Cell #1
17-03-17 22:23:13.828 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:23:13.868 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 22:23:13.868 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 22:23:13.868 -07 000000610 INF: =================== Cycle #63, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 22:23:13.998 -07 000000610 INF: LanePump: Xmit /1V400IP1500R\r
17-03-17 22:23:14.038 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:23:16.968 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:23:16.968 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 62. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=992, R2=1019, Total=2011. Warn if over 250 bubbles per interval.
17-03-17 22:23:17.958 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 63, FrontChillerTemperature: 4.004458,
17-03-17 22:23:20.168 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:23:20.198 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:23:20.618 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:23:20.648 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:23:21.068 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:23:21.098 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:23:21.518 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:23:21.548 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:23:21.968 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:23:21.968 -07 000000482 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 2
17-03-17 22:23:21.968 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 62. Bubbles during last 5000 ms interval: R1=2, R2=1, Total=3. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=994, R2=1020, Total=2014. Warn if over 250 bubbles per interval.
17-03-17 22:23:21.998 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:23:21.998 -07 000000610 INF: LanePump: Waited 7959 ms for pump motion to complete
17-03-17 22:23:21.998 -07 000000610 INF: =================== Cycle #63, Pumping Reagent PR2 (3) ===================
17-03-17 22:23:22.128 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:23:22.158 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 22:23:22.158 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 22:23:22.288 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:23:22.318 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 22:23:22.318 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 22:23:22.318 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 22:23:22.448 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 22:23:22.478 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:23:22.908 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:23:22.938 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:23:22.938 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 22:23:22.938 -07 000000610 INF: =================== Cycle #63 ===================
17-03-17 22:23:23.328 -07 000000438 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 63, FrontChillerTemperature: 4.003063,
17-03-17 22:23:24.158 -07 000000610 INF: AsyncDelayTimer waited 1220ms
17-03-17 22:23:24.158 -07 000000610 INF: ReagentValve: Go to position 1 - PumpToFlowcell start
17-03-17 22:23:24.158 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 22:23:24.178 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 22:23:24.178 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 1. Moving 2 positions.
17-03-17 22:23:24.178 -07 000000610 INF: ReagentValve: Xmit -01\r
17-03-17 22:23:24.388 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 22:23:24.408 -07 000000610 INF: ReagentValve: Recv 0198\r
17-03-17 22:23:24.408 -07 000000610 INF: ReagentValve: Move- from 3 to 1 took 408 steps, expected 408. Error = 0 steps (0.0%)
17-03-17 22:23:24.458 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 22:23:24.478 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-17 22:23:24.478 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 22:23:24.578 -07 000000610 INF: =================== Cycle #63, Pumping Reagent IMT (1) ===================
17-03-17 22:23:24.578 -07 000000610 INF: LanePump: Pumping from 1, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 22:23:24.578 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:23:24.608 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 22:23:24.608 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 22:23:24.608 -07 000000610 INF: =================== Cycle #63, Pumping Reagent IMT (1), Aspirating port InputPort ===================
17-03-17 22:23:24.738 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 22:23:24.778 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:23:26.218 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:23:26.248 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:23:26.668 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:23:26.698 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:23:26.698 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-17 22:23:26.698 -07 000000610 INF: =================== Cycle #63, Pumping Reagent IMT (1) ===================
17-03-17 22:23:26.828 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:23:26.858 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 22:23:26.858 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 22:23:26.968 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 0
17-03-17 22:23:26.968 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 62. Bubbles during last 5000 ms interval: R1=0, R2=1, Total=1. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=994, R2=1021, Total=2015. Warn if over 250 bubbles per interval.
17-03-17 22:23:26.988 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:23:27.018 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 22:23:27.018 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 22:23:27.018 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 22:23:27.148 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 22:23:27.178 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:23:27.608 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:23:27.638 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:23:27.638 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 22:23:27.638 -07 000000610 INF: =================== Cycle #63 ===================
17-03-17 22:23:28.858 -07 000000610 INF: AsyncDelayTimer waited 1218ms
17-03-17 22:23:28.858 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 22:23:28.858 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 22:23:29.598 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 63, FrontChillerTemperature: 3.997626,
17-03-17 22:23:29.618 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-17 22:23:29.618 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 1 to 3. Moving 2 positions.
17-03-17 22:23:29.618 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 22:23:29.848 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 22:23:29.868 -07 000000610 INF: ReagentValve: Recv 01AC\r
17-03-17 22:23:29.868 -07 000000610 INF: ReagentValve: Move+ from 1 to 3 took 428 steps, expected 408. Error = 20 steps (4.9%)
17-03-17 22:23:29.918 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 22:23:29.938 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 22:23:29.938 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 22:23:30.038 -07 000000610 INF: =================== Cycle #63, Pumping Reagent PR2 (3) ===================
17-03-17 22:23:30.038 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 22:23:30.038 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:23:30.068 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 22:23:30.068 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 22:23:30.068 -07 000000610 INF: =================== Cycle #63, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 22:23:30.198 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 22:23:30.238 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:23:31.108 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:23:31.138 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:23:31.138 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-17 22:23:31.138 -07 000000610 INF: =================== Cycle #63, Pumping Reagent PR2 (3) ===================
17-03-17 22:23:31.268 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:23:31.298 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 22:23:31.298 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 22:23:31.428 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:23:31.458 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 22:23:31.458 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 22:23:31.458 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 22:23:31.588 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 22:23:31.618 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:23:31.968 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:23:31.968 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 62. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=994, R2=1021, Total=2015. Warn if over 250 bubbles per interval.
17-03-17 22:23:32.048 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:23:32.078 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:23:32.078 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 22:23:32.078 -07 000000610 INF: =================== Cycle #63 ===================
17-03-17 22:23:32.078 -07 000000610 INF: =================== Cycle #63, Flow Cell Temp 65° ===================
17-03-17 22:23:32.078 -07 000000610 INF: =================== Cycle #63, Flow Cell Temp 65°, FC temperature to 65° ===================
17-03-17 22:23:32.078 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 65000000\n [FlowCellTempControl]
17-03-17 22:23:32.078 -07 000000501 INF: FPGA: Recv TEC2TEMP 
17-03-17 22:23:32.088 -07 000000610 INF: FPGA: 'TEC2TEMP 0 65000000' command took 1 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:23:32.088 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 22:23:32.088 -07 000000482 INF: FPGA: Recv TEC2EN 
17-03-17 22:23:32.098 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:23:32.098 -07 000000610 INF: =================== Cycle #63, Flow Cell Temp 65° ===================
17-03-17 22:23:32.098 -07 000000610 INF: =================== Cycle #63 ===================
17-03-17 22:23:32.098 -07 000000610 INF: WaitCommand(30000) start
17-03-17 22:23:34.958 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 63, FrontChillerTemperature: 3.970374,
17-03-17 22:23:36.968 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:23:36.968 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 62. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=994, R2=1021, Total=2015. Warn if over 250 bubbles per interval.
17-03-17 22:23:40.328 -07 000000438 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 63, FrontChillerTemperature: 3.966297,
17-03-17 22:23:41.968 -07 000000448 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:23:41.968 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 62. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=994, R2=1021, Total=2015. Warn if over 250 bubbles per interval.
17-03-17 22:23:45.698 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 63, FrontChillerTemperature: 3.985358,
17-03-17 22:23:46.968 -07 000000459 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:23:46.968 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 62. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=994, R2=1021, Total=2015. Warn if over 250 bubbles per interval.
17-03-17 22:23:51.068 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 63, FrontChillerTemperature: 3.999021,
17-03-17 22:23:51.968 -07 000000482 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:23:51.968 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 62. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=994, R2=1021, Total=2015. Warn if over 250 bubbles per interval.
17-03-17 22:23:56.438 -07 000000476 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 63, FrontChillerTemperature: 4.008536,
17-03-17 22:23:56.998 -07 000000482 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:23:56.998 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 62. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=994, R2=1021, Total=2015. Warn if over 250 bubbles per interval.
17-03-17 22:24:01.968 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:24:01.968 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 62. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=994, R2=1021, Total=2015. Warn if over 250 bubbles per interval.
17-03-17 22:24:02.108 -07 000000610 INF: WaitCommand(30000) end
17-03-17 22:24:02.108 -07 000000610 INF: =================== Cycle #63, Pumping Reagent PR2 (3) ===================
17-03-17 22:24:02.108 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 5 µL, calling command Pumping to Flow Cell #1
17-03-17 22:24:02.208 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:24:02.238 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 22:24:02.238 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 22:24:02.238 -07 000000610 INF: =================== Cycle #63, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 22:24:02.318 -07 000000627 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 63, FrontChillerTemperature: 3.99219,
17-03-17 22:24:02.368 -07 000000610 INF: LanePump: Xmit /1V400IP30R\r
17-03-17 22:24:02.408 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:24:02.948 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:24:02.978 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:24:02.978 -07 000000610 INF: LanePump: Waited 569 ms for pump motion to complete
17-03-17 22:24:02.978 -07 000000610 INF: =================== Cycle #63, Pumping Reagent PR2 (3) ===================
17-03-17 22:24:03.108 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:24:03.138 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 22:24:03.138 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-17 22:24:03.268 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:24:03.298 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 22:24:03.298 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-17 22:24:03.298 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 22:24:03.428 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 22:24:03.458 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:24:03.888 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:24:03.918 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:24:03.918 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 22:24:03.918 -07 000000610 INF: =================== Cycle #63 ===================
17-03-17 22:24:03.918 -07 000000448 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 22:24:03.918 -07 000000438 INF: WaitCommand(30000) start
17-03-17 22:24:03.918 -07 000000448 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 22:24:05.138 -07 000000448 INF: AsyncDelayTimer waited 1214ms
17-03-17 22:24:05.138 -07 000000448 INF: LanePump: Xmit /1?\r
17-03-17 22:24:05.168 -07 000000448 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 22:24:05.168 -07 000000448 INF: LanePump: Current Position of Pump is: 1920
17-03-17 22:24:05.298 -07 000000448 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 22:24:05.338 -07 000000448 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:24:06.968 -07 000000431 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:24:06.968 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 62. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=994, R2=1021, Total=2015. Warn if over 250 bubbles per interval.
17-03-17 22:24:07.678 -07 000000448 INF: LanePump: Xmit /1Q\r
17-03-17 22:24:07.678 -07 000000476 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 63, FrontChillerTemperature: 4.009895,
17-03-17 22:24:07.708 -07 000000448 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:24:08.128 -07 000000448 INF: LanePump: Xmit /1Q\r
17-03-17 22:24:08.158 -07 000000448 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:24:08.158 -07 000000448 INF: LanePump: Waited 2819 ms for pump motion to complete
17-03-17 22:24:08.158 -07 000000448 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 22:24:08.158 -07 000000448 INF: ===================  ===================
17-03-17 22:24:11.968 -07 000000482 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:24:11.968 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 62. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=994, R2=1021, Total=2015. Warn if over 250 bubbles per interval.
17-03-17 22:24:13.048 -07 000000012 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 63, FrontChillerTemperature: 4.018051,
17-03-17 22:24:16.968 -07 000000459 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:24:16.968 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 62. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=994, R2=1021, Total=2015. Warn if over 250 bubbles per interval.
17-03-17 22:24:18.428 -07 000000476 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 63, FrontChillerTemperature: 4.015368,
17-03-17 22:24:21.968 -07 000000431 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:24:21.968 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 62. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=994, R2=1021, Total=2015. Warn if over 250 bubbles per interval.
17-03-17 22:24:23.788 -07 000000431 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 63, FrontChillerTemperature: 4.004458,
17-03-17 22:24:26.968 -07 000000482 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:24:26.968 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 62. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=994, R2=1021, Total=2015. Warn if over 250 bubbles per interval.
17-03-17 22:24:29.158 -07 000000431 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 63, FrontChillerTemperature: 3.988112,
17-03-17 22:24:31.968 -07 000000482 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:24:31.968 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 62. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=994, R2=1021, Total=2015. Warn if over 250 bubbles per interval.
17-03-17 22:24:33.928 -07 000000438 INF: WaitCommand(30000) end
17-03-17 22:24:33.928 -07 000000610 INF: =================== Cycle #63, Flow Cell Temp 22° ===================
17-03-17 22:24:33.928 -07 000000610 INF: =================== Cycle #63, Flow Cell Temp 22°, FC temperature to 22° ===================
17-03-17 22:24:33.928 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 22000000\n [FlowCellTempControl]
17-03-17 22:24:33.938 -07 000000012 INF: FPGA: Recv TEC2TEMP 
17-03-17 22:24:33.938 -07 000000610 INF: FPGA: 'TEC2TEMP 0 22000000' command took 1 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 22:24:33.938 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 22:24:33.938 -07 000000459 INF: FPGA: Recv TEC2EN 
17-03-17 22:24:33.948 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:24:33.948 -07 000000610 INF: =================== Cycle #63, Flow Cell Temp 22° ===================
17-03-17 22:24:33.948 -07 000000610 INF: =================== Cycle #63 ===================
17-03-17 22:24:33.948 -07 000000610 INF: =================== Cycle #63, Pumping Reagent PR2 (3) ===================
17-03-17 22:24:33.948 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-17 22:24:33.948 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:24:33.988 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 22:24:33.988 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 22:24:33.988 -07 000000610 INF: =================== Cycle #63, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 22:24:34.118 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-17 22:24:34.158 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:24:34.528 -07 000000482 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 63, FrontChillerTemperature: 3.986717,
17-03-17 22:24:36.968 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:24:36.968 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 62. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=994, R2=1021, Total=2015. Warn if over 250 bubbles per interval.
17-03-17 22:24:37.288 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:24:37.318 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:24:37.738 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:24:37.768 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:24:38.188 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:24:38.218 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:24:38.218 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-17 22:24:38.218 -07 000000610 INF: =================== Cycle #63, Pumping Reagent PR2 (3) ===================
17-03-17 22:24:38.348 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:24:38.378 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 22:24:38.378 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 22:24:38.508 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:24:38.538 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 22:24:38.538 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 22:24:38.538 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 22:24:38.668 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 22:24:38.698 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:24:39.128 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:24:39.158 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:24:39.158 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 22:24:39.158 -07 000000610 INF: =================== Cycle #63 ===================
17-03-17 22:24:39.898 -07 000000438 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 63, FrontChillerTemperature: 3.983999,
17-03-17 22:24:40.378 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 22:24:40.378 -07 000000610 INF: ReagentValve: Go to position 2 - PumpToFlowcell start
17-03-17 22:24:40.378 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 22:24:40.398 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 22:24:40.398 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 2. Moving 1 positions.
17-03-17 22:24:40.398 -07 000000610 INF: ReagentValve: Xmit -02\r
17-03-17 22:24:40.548 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 22:24:40.568 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-17 22:24:40.568 -07 000000610 INF: ReagentValve: Move- from 3 to 2 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-17 22:24:40.618 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 22:24:40.638 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-17 22:24:40.638 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 22:24:40.738 -07 000000610 INF: =================== Cycle #63, Pumping Reagent USM (2) ===================
17-03-17 22:24:40.738 -07 000000610 INF: LanePump: Pumping from 2, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 22:24:40.738 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:24:40.768 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 22:24:40.768 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 22:24:40.768 -07 000000610 INF: =================== Cycle #63, Pumping Reagent USM (2), Aspirating port InputPort ===================
17-03-17 22:24:40.898 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 22:24:40.938 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:24:41.968 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:24:41.968 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 62. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=994, R2=1021, Total=2015. Warn if over 250 bubbles per interval.
17-03-17 22:24:42.378 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:24:42.408 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:24:42.828 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:24:42.858 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:24:42.858 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-17 22:24:42.858 -07 000000610 INF: =================== Cycle #63, Pumping Reagent USM (2) ===================
17-03-17 22:24:42.988 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:24:43.018 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 22:24:43.018 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 22:24:43.148 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:24:43.178 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 22:24:43.178 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 22:24:43.178 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 22:24:43.308 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 22:24:43.338 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:24:43.768 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:24:43.798 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:24:43.798 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 22:24:43.798 -07 000000610 INF: =================== Cycle #63 ===================
17-03-17 22:24:45.018 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 22:24:45.018 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 22:24:45.018 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 22:24:45.038 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-17 22:24:45.038 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 2 to 3. Moving 1 positions.
17-03-17 22:24:45.038 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 22:24:45.188 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 22:24:45.208 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-17 22:24:45.208 -07 000000610 INF: ReagentValve: Move+ from 2 to 3 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-17 22:24:45.258 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 22:24:45.258 -07 000000438 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 63, FrontChillerTemperature: 3.959467,
17-03-17 22:24:45.278 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 22:24:45.278 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 22:24:45.378 -07 000000610 INF: =================== Cycle #63, Pumping Reagent PR2 (3) ===================
17-03-17 22:24:45.378 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 22:24:45.378 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:24:45.408 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 22:24:45.408 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 22:24:45.408 -07 000000610 INF: =================== Cycle #63, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 22:24:45.538 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 22:24:45.578 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:24:46.448 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:24:46.478 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:24:46.478 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-17 22:24:46.478 -07 000000610 INF: =================== Cycle #63, Pumping Reagent PR2 (3) ===================
17-03-17 22:24:46.608 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:24:46.638 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 22:24:46.638 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 22:24:46.768 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:24:46.798 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 22:24:46.798 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 22:24:46.798 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 22:24:46.928 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 22:24:46.958 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:24:46.968 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:24:46.968 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 62. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=994, R2=1021, Total=2015. Warn if over 250 bubbles per interval.
17-03-17 22:24:47.388 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:24:47.418 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:24:47.418 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 22:24:47.418 -07 000000610 INF: =================== Cycle #63 ===================
17-03-17 22:24:47.418 -07 000000431 INF: WaitCommand(10000) start
17-03-17 22:24:47.418 -07 000000501 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 22:24:47.418 -07 000000501 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 22:24:48.638 -07 000000501 INF: AsyncDelayTimer waited 1216ms
17-03-17 22:24:48.638 -07 000000501 INF: LanePump: Xmit /1?\r
17-03-17 22:24:48.668 -07 000000501 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 22:24:48.668 -07 000000501 INF: LanePump: Current Position of Pump is: 1110
17-03-17 22:24:48.798 -07 000000501 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 22:24:48.838 -07 000000501 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:24:50.368 -07 000000501 INF: LanePump: Xmit /1Q\r
17-03-17 22:24:50.398 -07 000000501 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:24:50.618 -07 000000482 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 63, FrontChillerTemperature: 3.978563,
17-03-17 22:24:50.818 -07 000000501 INF: LanePump: Xmit /1Q\r
17-03-17 22:24:50.848 -07 000000501 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:24:50.848 -07 000000501 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-17 22:24:50.848 -07 000000501 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 22:24:50.848 -07 000000501 INF: ===================  ===================
17-03-17 22:24:51.968 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:24:51.968 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 62. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=994, R2=1021, Total=2015. Warn if over 250 bubbles per interval.
17-03-17 22:24:55.978 -07 000000459 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 63, FrontChillerTemperature: 3.99219,
17-03-17 22:24:56.968 -07 000000482 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:24:56.968 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 62. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=994, R2=1021, Total=2015. Warn if over 250 bubbles per interval.
17-03-17 22:24:57.428 -07 000000431 INF: WaitCommand(10000) end
17-03-17 22:24:57.428 -07 000000610 INF: =================== Cycle #63, Imaging ===================
17-03-17 22:24:57.428 -07 000000610 INF: Imaging Cycle 63: ScanTilesCommand Cycle 63 time start.
17-03-17 22:24:57.428 -07 000000610 INF: ReagentValve: Go to position 24 (Plug) - Start of ScanTilesCommand
17-03-17 22:24:57.428 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 22:24:57.458 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 22:24:57.458 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 24. Moving 3 positions.
17-03-17 22:24:57.458 -07 000000610 INF: ReagentValve: Xmit -18\r
17-03-17 22:24:57.758 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 22:24:57.778 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-17 22:24:57.778 -07 000000610 INF: ReagentValve: Move- from 3 to 24 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-17 22:24:57.828 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 22:24:57.848 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-17 22:24:57.848 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:24:57.848 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:24:57.848 -07 000000482 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms start.
17-03-17 22:24:57.848 -07 000000482 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:24:57.848 -07 000000482 INF: FPGA: Xmit EXLED1ON\n [RedLED]
17-03-17 22:24:57.848 -07 000000431 INF: FPGA: Recv EXLED1ON 
17-03-17 22:24:57.858 -07 000000482 INF: FPGA: 'EXLED1ON' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 22:24:57.858 -07 000000482 INF: FPGA: Xmit EXLED1ADCR\n [RedLED]
17-03-17 22:24:57.858 -07 000000431 INF: FPGA: Recv EXLED1ADCR 23172
17-03-17 22:24:57.868 -07 000000482 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:24:57.868 -07 000000482 INF: RedLED: Using Red data: Photodiode ADC 23172 --> 7.4 mW (old method), or 205.4 mW (new method). Difference = 197.9 mW
17-03-17 22:24:57.868 -07 000000482 INF: FPGA: Xmit EXLED1OFF\n [RedLED]
17-03-17 22:24:57.868 -07 000000431 INF: FPGA: Recv EXLED1OFF 
17-03-17 22:24:57.878 -07 000000482 INF: FPGA: 'EXLED1OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:24:57.878 -07 000000482 INF: RedLED: LED was on for 20 ms
17-03-17 22:24:57.878 -07 000000482 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms end. Duration was 24 ms.
17-03-17 22:24:57.878 -07 000000482 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms start.
17-03-17 22:24:57.878 -07 000000482 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:24:57.878 -07 000000482 INF: FPGA: Xmit EXLED2ON\n [GreenLED]
17-03-17 22:24:57.878 -07 000000431 INF: FPGA: Recv EXLED2ON 
17-03-17 22:24:57.888 -07 000000482 INF: FPGA: 'EXLED2ON' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:24:57.888 -07 000000482 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-17 22:24:57.888 -07 000000431 INF: FPGA: Recv EXLED1ADCR 2099
17-03-17 22:24:57.898 -07 000000482 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:24:57.898 -07 000000482 INF: GreenLED: Using Green data: Photodiode ADC 2099 --> 0.9 mW (old method), or 182.4 mW (new method). Difference = 181.5 mW
17-03-17 22:24:57.898 -07 000000482 INF: FPGA: Xmit EXLED2OFF\n [GreenLED]
17-03-17 22:24:57.898 -07 000000431 INF: FPGA: Recv EXLED2OFF 
17-03-17 22:24:57.908 -07 000000482 INF: FPGA: 'EXLED2OFF' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:24:57.908 -07 000000482 INF: GreenLED: LED was on for 19 ms
17-03-17 22:24:57.908 -07 000000482 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms end. Duration was 28 ms.
17-03-17 22:24:57.908 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-17 22:24:57.908 -07 000000438 INF: FPGA: Recv EMCUR 
17-03-17 22:24:57.918 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:24:57.918 -07 000000610 INF: FPGA: Xmit EMOUT 20 70\n [Compensator]
17-03-17 22:24:58.418 -07 000000438 INF: FPGA: Recv EMOUT
17-03-17 22:24:58.418 -07 000000610 INF: FPGA: 'EMOUT 20 70' command took 0 ms to send, 493 ms to get response, and 502 ms overall
17-03-17 22:24:58.418 -07 000000610 INF: FPGA: Xmit EMCUR 75\n [Compensator]
17-03-17 22:24:58.418 -07 000000012 INF: FPGA: Recv EMCUR 
17-03-17 22:24:58.428 -07 000000610 INF: FPGA: 'EMCUR 75' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:24:58.428 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 22:24:58.428 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 75.38037109375, Z-Position -0.127871801277704. ------
17-03-17 22:24:58.428 -07 000000438 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:24:58.428 -07 000000012 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.17942 mm
17-03-17 22:24:58.428 -07 000000012 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:24:58.428 -07 000000431 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-17 22:24:58.428 -07 000000431 INF: Y Motor: Moving to 59.9126 mm, started at 75.3804 mm, delta = -15.4678 mm
17-03-17 22:24:58.438 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:24:58.438 -07 000000476 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:24:58.438 -07 000000438 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 22:24:58.438 -07 000000482 INF: Z Motor: Entering MoveAbsStepped (DAC = 39194, sync = True, waitForSettling = False)
17-03-17 22:24:58.438 -07 000000482 INF: Z Motor: Moving to -0.179419 mm, started at -0.127872 mm, distance = -51.55 um
17-03-17 22:24:58.438 -07 000000382 INF: FPGA: Recv YRDPOS 154380
17-03-17 22:24:58.448 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:24:58.448 -07 000000482 INF: FPGA: Xmit ZDACW 39194\n [Z Motor]
17-03-17 22:24:58.448 -07 000000431 INF: Y Motor: Encoder = 154380 = motor step 120609.4 = 75.3809 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:24:58.448 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 22:24:58.448 -07 000000431 INF: Y Motor: Last commanded position = 75.3806 mm (120608.9 steps), delta from last commanded position = -15.4680 mm (-24748.8 steps). UsingTableMove = False
17-03-17 22:24:58.448 -07 000000431 INF: Y Motor: Moving to 122701 encoder counts
17-03-17 22:24:58.458 -07 000000482 INF: FPGA: 'ZDACW 39194' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-17 22:24:58.458 -07 000000438 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:24:58.468 -07 000000431 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-17 22:24:58.478 -07 000000482 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:24:58.478 -07 000000476 INF: FPGA: Recv ZDACR 39194
17-03-17 22:24:58.488 -07 000000482 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:24:58.488 -07 000000482 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-17 22:24:58.658 -07 000000475 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:24:58.658 -07 000000438 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-17 22:25:00.148 -07 000000459 INF: FPGA: Recv YMVTO 122702 24777
17-03-17 22:25:00.148 -07 000000431 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1676 ms to get response, and 1703 ms overall
17-03-17 22:25:00.148 -07 000000431 INF: Y Motor: Position error before settling = 1 encoder counts (0.000 mm)
17-03-17 22:25:00.148 -07 000000431 INF: Y Motor: To move from 75.381 to 59.913 (-15.468 mm) should take 24749 steps, but required 24777 steps (15.486 mm). Slippage = 0.018 mm (0.00%).
17-03-17 22:25:00.148 -07 000000431 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1703 ms, distance = 15.468 mm, average velocity = 9.083 mm/sec
17-03-17 22:25:01.338 -07 000000475 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 63, FrontChillerTemperature: 3.985358,
17-03-17 22:25:01.968 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:25:01.968 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 62. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=994, R2=1021, Total=2015. Warn if over 250 bubbles per interval.
17-03-17 22:25:02.998 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:25:02.998 -07 000000459 INF: FPGA: Recv YRDPOS 122696
17-03-17 22:25:03.008 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:03.008 -07 000000431 INF: Y Motor: Encoder = 122696 = motor step 95856.3 = 59.9102 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:25:03.028 -07 000000431 INF: Y Motor: After move to 59.912609, error = -0.002453, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:25:03.028 -07 000000431 INF: Y Motor: Position error after settling = -5 encoder counts (-0.002 mm), Delta during settling = -6 counts (-0.003 mm)
17-03-17 22:25:03.028 -07 000000431 INF: Y Motor: Moved to 59.9102 after 4595 ms
17-03-17 22:25:03.028 -07 000000012 INF: Z Motor: EndOfMoveAbsStepped: target = -0.179419 mm (DAC = 39194)
17-03-17 22:25:03.028 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:03.038 -07 000000626 INF: FPGA: Recv ZSGSRD 37222
17-03-17 22:25:03.048 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:25:03.048 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:03.048 -07 000000626 INF: FPGA: Recv ZSGSRD 37222
17-03-17 22:25:03.058 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:03.058 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:03.058 -07 000000459 INF: FPGA: Recv ZSGSRD 37218
17-03-17 22:25:03.068 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:03.068 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:03.068 -07 000000459 INF: FPGA: Recv ZSGSRD 37216
17-03-17 22:25:03.078 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:03.078 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:03.078 -07 000000459 INF: FPGA: Recv ZSGSRD 37218
17-03-17 22:25:03.088 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:03.088 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:03.088 -07 000000459 INF: FPGA: Recv ZSGSRD 37223
17-03-17 22:25:03.098 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:03.098 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:03.098 -07 000000626 INF: FPGA: Recv ZSGSRD 37217
17-03-17 22:25:03.108 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:03.108 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:03.108 -07 000000482 INF: FPGA: Recv ZSGSRD 37222
17-03-17 22:25:03.118 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:03.118 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:03.118 -07 000000482 INF: FPGA: Recv ZSGSRD 37222
17-03-17 22:25:03.128 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:03.128 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:03.128 -07 000000626 INF: FPGA: Recv ZSGSRD 37219
17-03-17 22:25:03.138 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:03.138 -07 000000012 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:25:03.138 -07 000000438 INF: FPGA: Recv ZPIEZORD 33684
17-03-17 22:25:03.148 -07 000000012 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:03.148 -07 000000012 INF: Z Motor: Piezo is near 52.0 V (nominally 0 to 100 V), expect near 59.8 V, since DAC is at 5.981 V. Piezo Error = -7.8 V.
17-03-17 22:25:03.148 -07 000000012 INF: Z Motor: ReadAdcAverage: Commanded Z = -179.4 um, Read 10 ADC samples: Avg = 37220 (-178.5 uncal um), Error = 0.9 uncal um, Median = 37220 (-178.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 37216 (-178.5 uncal um), Max = 37223 (-178.6 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 22:25:03.148 -07 000000012 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37220, posNoise = 3, negNoise = 4
17-03-17 22:25:03.148 -07 000000012 INF: Z Motor: After move to -0.179419, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:25:03.148 -07 000000012 INF: Z Motor: Settle wait time = 4598 ms, measure time = 111 ms (allowed 150 ms), total time = 4709 ms
17-03-17 22:25:03.148 -07 000000012 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-17 22:25:03.188 -07 000000012 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4754 ms
17-03-17 22:25:03.188 -07 000000012 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:25:03.188 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:25:03.188 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:25:03.188 -07 000000476 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:25:03.188 -07 000000476 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:25:03.198 -07 000000476 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:25:03.198 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:25:03.198 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:25:03.198 -07 000000476 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-17 22:25:03.218 -07 000000476 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 23 ms.
17-03-17 22:25:03.218 -07 000000476 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:25:03.228 -07 000000476 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 22:25:03.228 -07 000000476 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:25:03.238 -07 000000476 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 22:25:03.238 -07 000000476 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 39 ms.
17-03-17 22:25:03.238 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:25:03.288 -07 000000476 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:25:03.488 -07 000000476 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:25:03.488 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:25:03.488 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:25:03.488 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 22:25:03.518 -07 000000476 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:25:03.528 -07 000000476 INF: FPGA: Recv CAMSNAP
17-03-17 22:25:03.528 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 284 ms overall
17-03-17 22:25:03.608 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 125 ms.
17-03-17 22:25:03.608 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:25:03.608 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:25:03.608 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 127 ms.
17-03-17 22:25:03.628 -07 000000476 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:25:04.168 -07 000000627 INF: Image SNR check: start
17-03-17 22:25:04.178 -07 000000627 INF: Image SNR check: pass  [peak (Max-Min)=59.95]
17-03-17 22:25:04.178 -07 000000627 INF: Autofocus start
17-03-17 22:25:04.178 -07 000000627 INF: MeasureProfile start
17-03-17 22:25:04.188 -07 000000627 INF: MeasureProfile done
17-03-17 22:25:04.188 -07 000000627 INF: X=0  Z correction [um]=-0.0713522
17-03-17 22:25:04.188 -07 000000627 INF: Autofocus finished
17-03-17 22:25:04.188 -07 000000627 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:25:04.188 -07 000000476 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 557 ms to get response, and 563 ms overall
17-03-17 22:25:04.188 -07 000000476 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:25:04.398 -07 000000627 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:25:04.398 -07 000000476 INF: FPGA: 'FOCMRRIMG' command took 1 ms to send, 200 ms to get response, and 202 ms overall
17-03-17 22:25:04.398 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.91015625, Z-position -0.179432527927478. ----------
17-03-17 22:25:04.398 -07 000000610 INF: Cycle	63	Tile	1	Exposure Settings		A	452	G	217	T	217	C	452
17-03-17 22:25:04.398 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37691, sync = True, waitForSettling = True)
17-03-17 22:25:04.398 -07 000000610 INF: Z Motor: Moving to -0.172538 mm, started at -0.179433 mm, distance = 6.89 um
17-03-17 22:25:04.398 -07 000000610 INF: FPGA: Xmit ZDACW 37691\n [Z Motor]
17-03-17 22:25:04.408 -07 000000627 INF: FPGA: Recv ZDACW
17-03-17 22:25:04.408 -07 000000610 INF: FPGA: 'ZDACW 37691' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 22:25:04.408 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:25:04.408 -07 000000476 INF: FPGA: Recv ZDACR 37691
17-03-17 22:25:04.418 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:25:04.418 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:25:04.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:04.568 -07 000000476 INF: FPGA: Recv ZSGSRD 36146
17-03-17 22:25:04.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:25:04.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:04.578 -07 000000627 INF: FPGA: Recv ZSGSRD 36150
17-03-17 22:25:04.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:04.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:04.588 -07 000000476 INF: FPGA: Recv ZSGSRD 36152
17-03-17 22:25:04.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:04.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:04.598 -07 000000627 INF: FPGA: Recv ZSGSRD 36146
17-03-17 22:25:04.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:04.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:04.608 -07 000000476 INF: FPGA: Recv ZSGSRD 36144
17-03-17 22:25:04.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:04.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:04.618 -07 000000476 INF: FPGA: Recv ZSGSRD 36153
17-03-17 22:25:04.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:04.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:04.628 -07 000000476 INF: FPGA: Recv ZSGSRD 36153
17-03-17 22:25:04.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:04.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:04.638 -07 000000627 INF: FPGA: Recv ZSGSRD 36149
17-03-17 22:25:04.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:04.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:04.648 -07 000000476 INF: FPGA: Recv ZSGSRD 36143
17-03-17 22:25:04.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:04.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:04.658 -07 000000627 INF: FPGA: Recv ZSGSRD 36149
17-03-17 22:25:04.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:04.668 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:25:04.668 -07 000000627 INF: FPGA: Recv ZPIEZORD 32237
17-03-17 22:25:04.678 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:04.678 -07 000000610 INF: Z Motor: Piezo is near 48.9 V (nominally 0 to 100 V), expect near 57.5 V, since DAC is at 5.751 V. Piezo Error = -8.6 V.
17-03-17 22:25:04.678 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.5 um, Read 10 ADC samples: Avg = 36148 (-171.7 uncal um), Error = 0.9 uncal um, Median = 36149 (-171.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 36143 (-171.6 uncal um), Max = 36153 (-171.7 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 22:25:04.678 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36148, posNoise = 5, negNoise = 5
17-03-17 22:25:04.678 -07 000000610 INF: Z Motor: After move to -0.172538, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:25:04.678 -07 000000610 INF: Z Motor: MoveAbsStepped took 273 ms)
17-03-17 22:25:04.678 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:25:04.678 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:25:04.678 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:25:04.678 -07 000000476 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:25:04.678 -07 000000627 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:25:04.678 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:25:04.678 -07 000000476 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:25:04.678 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:25:04.678 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:25:04.678 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:25:04.678 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:25:04.678 -07 000000476 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-17 22:25:04.688 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:25:04.688 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:25:04.698 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 22:25:04.698 -07 000000627 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 22:25:04.708 -07 000000476 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 22 ms.
17-03-17 22:25:04.708 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:25:04.708 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 22:25:04.708 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:25:04.718 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 12 ms.
17-03-17 22:25:04.718 -07 000000476 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 39 ms.
17-03-17 22:25:04.728 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 452 452 217 217 37868 150\n [Camera]
17-03-17 22:25:04.928 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:25:05.378 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 644
17-03-17 22:25:05.378 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 644
17-03-17 22:25:05.378 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:25:05.378 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:25:05.378 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 22:25:05.378 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 644
17-03-17 22:25:05.378 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 644
17-03-17 22:25:05.378 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:25:05.378 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:25:05.378 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) start.
17-03-17 22:25:05.568 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37868 837
17-03-17 22:25:05.718 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP turning grn on 987
17-03-17 22:25:05.758 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) end. Duration was 381 ms.
17-03-17 22:25:05.758 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-17 22:25:05.758 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:25:05.768 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 391 ms.
17-03-17 22:25:05.768 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 22:25:05.768 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:25:05.768 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 22:25:05.778 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 22:25:05.778 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 22:25:05.778 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 22:25:05.938 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1206
17-03-17 22:25:05.938 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1206
17-03-17 22:25:05.938 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:25:06.048 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1206
17-03-17 22:25:06.048 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1206
17-03-17 22:25:06.048 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:25:06.048 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-17 22:25:06.048 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:25:06.058 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:25:06.058 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 22:25:06.128 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP 1397
17-03-17 22:25:06.128 -07 000000501 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:25:06.128 -07 000000610 INF: FPGA: 'CAMDBLSNAP 452 452 217 217 37868 150' command took 2 ms to send, 1394 ms to get response, and 1404 ms overall
17-03-17 22:25:06.128 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 22:25:06.128 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.91015625, Z-Position -0.17254577251151. ------
17-03-17 22:25:06.128 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:25:06.128 -07 000000512 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.17881 mm
17-03-17 22:25:06.128 -07 000000512 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:25:06.138 -07 000000438 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-17 22:25:06.138 -07 000000438 INF: Y Motor: Moving to 60.7426 mm, started at 59.9102 mm, delta = 0.8325 mm
17-03-17 22:25:06.138 -07 000000476 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:25:06.138 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 22:25:06.138 -07 000000501 INF: Z Motor: Entering MoveAbsStepped (DAC = 39062, sync = True, waitForSettling = False)
17-03-17 22:25:06.138 -07 000000501 INF: Z Motor: Moving to -0.178814 mm, started at -0.172546 mm, distance = -6.27 um
17-03-17 22:25:06.138 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:25:06.138 -07 000000476 INF: FPGA: Recv YRDPOS 122696
17-03-17 22:25:06.148 -07 000000438 INF: FPGA: 'YRDPOS' command took 1 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:25:06.148 -07 000000438 INF: Y Motor: Encoder = 122696 = motor step 95856.3 = 59.9102 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:25:06.148 -07 000000438 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:25:06.148 -07 000000438 INF: Y Motor: Moving 1332 steps1
17-03-17 22:25:06.148 -07 000000626 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:25:06.158 -07 000000501 INF: FPGA: Xmit ZDACW 39062\n [Z Motor]
17-03-17 22:25:06.158 -07 000000431 INF: FPGA: Recv ZDACW
17-03-17 22:25:06.168 -07 000000438 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:25:06.168 -07 000000501 INF: FPGA: 'ZDACW 39062' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-17 22:25:06.178 -07 000000501 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:25:06.178 -07 000000382 INF: FPGA: Recv ZDACR 39062
17-03-17 22:25:06.188 -07 000000501 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:25:06.188 -07 000000501 INF: Z Motor: MoveAbsStepped took 47 ms (did NOT wait for settling yet))
17-03-17 22:25:06.348 -07 000000475 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:25:06.348 -07 000000626 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 210 ms overall
17-03-17 22:25:06.448 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 398 ms.
17-03-17 22:25:06.448 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 22:25:06.448 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:25:06.448 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 390 ms.
17-03-17 22:25:06.448 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 22:25:06.448 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:25:06.448 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:25:06.448 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 510 ms.
17-03-17 22:25:06.448 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:25:06.458 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-17 22:25:06.538 -07 000000382 INF: FPGA: Recv YMVTILE
17-03-17 22:25:06.538 -07 000000438 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 22:25:06.578 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:25:06.578 -07 000000547 INF: FPGA: Recv YRDPOS 124379
17-03-17 22:25:06.588 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:25:06.588 -07 000000438 INF: Y Motor: Encoder = 124379 = motor step 97171.1 = 60.7319 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:25:06.588 -07 000000438 INF: Y Motor: Position error before settling (table move) = -22 encoder counts (-0.011 mm)
17-03-17 22:25:06.588 -07 000000438 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.832 mm, average velocity = 2.092 mm/sec
17-03-17 22:25:06.698 -07 000000476 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 63, FrontChillerTemperature: 3.994908,
17-03-17 22:25:06.968 -07 000000475 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:25:06.968 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 62. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=994, R2=1021, Total=2015. Warn if over 250 bubbles per interval.
17-03-17 22:25:07.538 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:25:07.538 -07 000000012 INF: FPGA: Recv YRDPOS 124379
17-03-17 22:25:07.548 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:25:07.548 -07 000000438 INF: Y Motor: Encoder = 124379 = motor step 97171.1 = 60.7319 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:25:07.568 -07 000000438 INF: Y Motor: After move to 60.742607, error = -0.010674, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:25:07.568 -07 000000438 INF: Y Motor: Position error after settling (table move) = -22 encoder counts (-0.011 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:25:07.568 -07 000000438 INF: Y Motor: Moved to 60.7319 after 1434 ms (table move)
17-03-17 22:25:07.568 -07 000000512 INF: Z Motor: EndOfMoveAbsStepped: target = -0.178814 mm (DAC = 39062)
17-03-17 22:25:07.568 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:07.578 -07 000000438 INF: FPGA: Recv ZSGSRD 37129
17-03-17 22:25:07.588 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:25:07.588 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:07.588 -07 000000438 INF: FPGA: Recv ZSGSRD 37127
17-03-17 22:25:07.598 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:07.598 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:07.598 -07 000000012 INF: FPGA: Recv ZSGSRD 37128
17-03-17 22:25:07.608 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:07.608 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:07.608 -07 000000012 INF: FPGA: Recv ZSGSRD 37127
17-03-17 22:25:07.618 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:07.618 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:07.618 -07 000000012 INF: FPGA: Recv ZSGSRD 37115
17-03-17 22:25:07.628 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:07.628 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:07.628 -07 000000012 INF: FPGA: Recv ZSGSRD 37122
17-03-17 22:25:07.638 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:07.638 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:07.638 -07 000000476 INF: FPGA: Recv ZSGSRD 37120
17-03-17 22:25:07.648 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:07.648 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:08.228 -07 000000475 INF: FPGA: Recv ZSGSRD 37125
17-03-17 22:25:08.228 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 570 ms to get response, and 580 ms overall
17-03-17 22:25:08.248 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:08.248 -07 000000501 INF: FPGA: Recv ZSGSRD 37122
17-03-17 22:25:08.258 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-17 22:25:08.258 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:08.258 -07 000000626 INF: FPGA: Recv ZSGSRD 37134
17-03-17 22:25:08.268 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:25:08.278 -07 000000512 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:25:08.278 -07 000000431 INF: FPGA: Recv ZPIEZORD 33558
17-03-17 22:25:08.288 -07 000000512 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:25:08.288 -07 000000512 INF: Z Motor: Piezo is near 51.7 V (nominally 0 to 100 V), expect near 59.6 V, since DAC is at 5.960 V. Piezo Error = -7.9 V.
17-03-17 22:25:08.288 -07 000000512 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.8 um, Read 10 ADC samples: Avg = 37125 (-177.9 uncal um), Error = 0.9 uncal um, Median = 37126 (-177.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 19 (0.1 uncal um), Min = 37115 (-177.9 uncal um), Max = 37134 (-178.0 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-17 22:25:08.288 -07 000000512 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37125, posNoise = 9, negNoise = 10
17-03-17 22:25:08.288 -07 000000512 INF: Z Motor: After move to -0.178814, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:25:08.288 -07 000000512 INF: Z Motor: Settle wait time = 1436 ms, measure time = 711 ms (allowed 150 ms), total time = 2147 ms
17-03-17 22:25:08.288 -07 000000512 INF: Z Motor: Warning: Actual position measuring time = 711 ms, longer than max expected time of 150 ms
17-03-17 22:25:08.288 -07 000000512 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2151 ms
17-03-17 22:25:08.288 -07 000000512 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:25:08.288 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:25:08.288 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:25:08.288 -07 000000475 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:25:08.288 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:25:08.288 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:25:08.288 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:25:08.288 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:25:08.288 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:25:08.298 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:25:08.298 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:25:08.308 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 22:25:08.308 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-17 22:25:08.308 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:25:08.358 -07 000000512 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:25:08.558 -07 000000476 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:25:08.558 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:25:08.558 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:25:08.558 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 22:25:08.598 -07 000000382 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:25:08.598 -07 000000476 INF: FPGA: Recv CAMSNAP
17-03-17 22:25:08.598 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 285 ms overall
17-03-17 22:25:08.688 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 22:25:08.688 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:25:08.688 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:25:08.688 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 22:25:08.698 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:25:08.698 -07 000000501 INF: Autofocus start
17-03-17 22:25:08.698 -07 000000501 INF: MeasureProfile start
17-03-17 22:25:08.698 -07 000000459 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:25:08.708 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:25:08.708 -07 000000431 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:25:08.708 -07 000000501 INF: MeasureProfile done
17-03-17 22:25:08.708 -07 000000501 INF: X=-16  Z correction [um]=-0.1496812
17-03-17 22:25:08.708 -07 000000501 INF: Autofocus finished
17-03-17 22:25:08.908 -07 000000476 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:25:08.908 -07 000000431 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:25:08.908 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.73193359375, Z-position -0.17882222777401. ----------
17-03-17 22:25:08.908 -07 000000610 INF: Cycle	63	Tile	2	Exposure Settings		A	452	G	217	T	217	C	452
17-03-17 22:25:08.918 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37542, sync = True, waitForSettling = True)
17-03-17 22:25:08.918 -07 000000610 INF: Z Motor: Moving to -0.171856 mm, started at -0.178822 mm, distance = 6.97 um
17-03-17 22:25:08.918 -07 000000610 INF: FPGA: Xmit ZDACW 37542\n [Z Motor]
17-03-17 22:25:08.918 -07 000000012 INF: FPGA: Recv ZDACW
17-03-17 22:25:08.928 -07 000000610 INF: FPGA: 'ZDACW 37542' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:08.928 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:25:08.928 -07 000000476 INF: FPGA: Recv ZDACR 37542
17-03-17 22:25:08.938 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:08.938 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:25:09.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:09.088 -07 000000476 INF: FPGA: Recv ZSGSRD 36032
17-03-17 22:25:09.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:25:09.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:09.098 -07 000000012 INF: FPGA: Recv ZSGSRD 36043
17-03-17 22:25:09.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:09.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:09.108 -07 000000476 INF: FPGA: Recv ZSGSRD 36044
17-03-17 22:25:09.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:09.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:09.118 -07 000000012 INF: FPGA: Recv ZSGSRD 36049
17-03-17 22:25:09.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:09.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:09.128 -07 000000476 INF: FPGA: Recv ZSGSRD 36043
17-03-17 22:25:09.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:09.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:09.138 -07 000000459 INF: FPGA: Recv ZSGSRD 36043
17-03-17 22:25:09.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:09.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:09.148 -07 000000512 INF: FPGA: Recv ZSGSRD 36045
17-03-17 22:25:09.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:25:09.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:09.158 -07 000000512 INF: FPGA: Recv ZSGSRD 36041
17-03-17 22:25:09.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:09.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:09.168 -07 000000512 INF: FPGA: Recv ZSGSRD 36039
17-03-17 22:25:09.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:09.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:09.178 -07 000000012 INF: FPGA: Recv ZSGSRD 36044
17-03-17 22:25:09.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:09.188 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:25:09.188 -07 000000512 INF: FPGA: Recv ZPIEZORD 32065
17-03-17 22:25:09.198 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:09.198 -07 000000610 INF: Z Motor: Piezo is near 48.5 V (nominally 0 to 100 V), expect near 57.3 V, since DAC is at 5.729 V. Piezo Error = -8.8 V.
17-03-17 22:25:09.198 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.9 um, Read 10 ADC samples: Avg = 36042 (-171.0 uncal um), Error = 0.9 uncal um, Median = 36043 (-171.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 36032 (-170.9 uncal um), Max = 36049 (-171.0 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-17 22:25:09.198 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36042, posNoise = 7, negNoise = 10
17-03-17 22:25:09.198 -07 000000610 INF: Z Motor: After move to -0.171856, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:25:09.198 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 22:25:09.198 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:25:09.198 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:25:09.198 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:25:09.198 -07 000000476 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:25:09.198 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:25:09.198 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:25:09.198 -07 000000627 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:25:09.198 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:25:09.198 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:25:09.198 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:25:09.198 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:25:09.198 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:25:09.198 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 22:25:09.198 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:25:09.208 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 22:25:09.208 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:25:09.218 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 22:25:09.218 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 22:25:09.218 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 22:25:09.218 -07 000000627 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 22:25:09.228 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 452 452 217 217 37718 150\n [Camera]
17-03-17 22:25:09.428 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:25:09.878 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 644
17-03-17 22:25:09.878 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 644
17-03-17 22:25:09.878 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:25:09.878 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 644
17-03-17 22:25:09.878 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 644
17-03-17 22:25:09.878 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:25:09.878 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:25:09.878 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 1393576040, 0x0, 391868352) start.
17-03-17 22:25:09.888 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:25:09.888 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1428998304, 0x0, 418435064) start.
17-03-17 22:25:10.068 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37718 837
17-03-17 22:25:10.218 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP turning grn on 987
17-03-17 22:25:10.278 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 1393576040, 0x0, 391868352) end. Duration was 395 ms.
17-03-17 22:25:10.278 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 22:25:10.278 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:25:10.278 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:25:10.278 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 22:25:10.278 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1428998304, 0x0, 418435064) end. Duration was 396 ms.
17-03-17 22:25:10.278 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 22:25:10.278 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:25:10.288 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:25:10.288 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-17 22:25:10.438 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1204
17-03-17 22:25:10.438 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1204
17-03-17 22:25:10.438 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:25:10.438 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:25:10.438 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start.
17-03-17 22:25:10.438 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1204
17-03-17 22:25:10.438 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1204
17-03-17 22:25:10.438 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:25:10.438 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:25:10.438 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) start.
17-03-17 22:25:10.628 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP 1396
17-03-17 22:25:10.628 -07 000000382 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:25:10.628 -07 000000610 INF: FPGA: 'CAMDBLSNAP 452 452 217 217 37718 150' command took 2 ms to send, 1394 ms to get response, and 1403 ms overall
17-03-17 22:25:10.628 -07 000000610 INF: Skipping AutoFocus in Tile 3: adopting Best-Z from the cache: -0.172153
17-03-17 22:25:10.738 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.17215 mm
17-03-17 22:25:10.738 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:25:10.738 -07 000000382 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-17 22:25:10.738 -07 000000382 INF: Y Motor: Moving to 61.5726 mm, started at 60.7319 mm, delta = 0.8407 mm
17-03-17 22:25:10.738 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:25:10.738 -07 000000012 INF: Z Motor: Entering MoveAbsStepped (DAC = 37607, sync = True, waitForSettling = False)
17-03-17 22:25:10.738 -07 000000012 INF: Z Motor: Moving to -0.172154 mm, started at -0.171865 mm, distance = -0.29 um
17-03-17 22:25:10.738 -07 000000475 INF: FPGA: Recv YRDPOS 124379
17-03-17 22:25:10.748 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 22:25:10.748 -07 000000382 INF: Y Motor: Encoder = 124379 = motor step 97171.1 = 60.7319 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:25:10.748 -07 000000382 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:25:10.748 -07 000000382 INF: Y Motor: Moving 1345 steps-22
17-03-17 22:25:10.748 -07 000000012 INF: FPGA: Xmit ZDACW 37607\n [Z Motor]
17-03-17 22:25:10.748 -07 000000475 INF: FPGA: Recv ZDACW
17-03-17 22:25:10.758 -07 000000012 INF: FPGA: 'ZDACW 37607' command took 1 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 22:25:10.758 -07 000000012 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:25:10.758 -07 000000512 INF: FPGA: Recv ZDACR 37607
17-03-17 22:25:10.768 -07 000000012 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:10.768 -07 000000012 INF: Z Motor: MoveAbsStepped took 22 ms (did NOT wait for settling yet))
17-03-17 22:25:10.768 -07 000000382 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:25:10.828 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) end. Duration was 386 ms.
17-03-17 22:25:10.828 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 22:25:10.828 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:25:10.828 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 389 ms.
17-03-17 22:25:10.828 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 22:25:10.828 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:25:10.838 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:25:10.838 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 22:25:10.838 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 22:25:10.838 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 22:25:11.138 -07 000000475 INF: FPGA: Recv YMVTILE
17-03-17 22:25:11.138 -07 000000382 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 22:25:11.178 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:25:11.188 -07 000000431 INF: FPGA: Recv YRDPOS 126080
17-03-17 22:25:11.188 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 22:25:11.188 -07 000000382 INF: Y Motor: Encoder = 126080 = motor step 98500.0 = 61.5625 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:25:11.188 -07 000000382 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-17 22:25:11.188 -07 000000382 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.841 mm, average velocity = 2.112 mm/sec
17-03-17 22:25:11.968 -07 000000475 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:25:11.968 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 62. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=994, R2=1021, Total=2015. Warn if over 250 bubbles per interval.
17-03-17 22:25:12.058 -07 000000431 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 63, FrontChillerTemperature: 3.993549,
17-03-17 22:25:12.138 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:25:12.138 -07 000000475 INF: FPGA: Recv YRDPOS 126080
17-03-17 22:25:12.148 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:25:12.148 -07 000000382 INF: Y Motor: Encoder = 126080 = motor step 98500.0 = 61.5625 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:25:12.168 -07 000000382 INF: Y Motor: After move to 61.572609, error = -0.010109, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:25:12.168 -07 000000382 INF: Y Motor: Position error after settling (table move) = -21 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:25:12.168 -07 000000382 INF: Y Motor: Moved to 61.5625 after 1427 ms (table move)
17-03-17 22:25:12.168 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172154 mm (DAC = 37607)
17-03-17 22:25:12.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:12.178 -07 000000382 INF: FPGA: Recv ZSGSRD 36095
17-03-17 22:25:12.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 5 ms overall
17-03-17 22:25:12.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:12.178 -07 000000431 INF: FPGA: Recv ZSGSRD 36093
17-03-17 22:25:12.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:25:12.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:12.188 -07 000000626 INF: FPGA: Recv ZSGSRD 36086
17-03-17 22:25:12.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:12.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:12.198 -07 000000012 INF: FPGA: Recv ZSGSRD 36084
17-03-17 22:25:12.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:12.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:12.208 -07 000000012 INF: FPGA: Recv ZSGSRD 36096
17-03-17 22:25:12.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:12.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:12.218 -07 000000012 INF: FPGA: Recv ZSGSRD 36091
17-03-17 22:25:12.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:12.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:12.228 -07 000000012 INF: FPGA: Recv ZSGSRD 36090
17-03-17 22:25:12.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:12.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:12.238 -07 000000626 INF: FPGA: Recv ZSGSRD 36092
17-03-17 22:25:12.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:12.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:12.248 -07 000000626 INF: FPGA: Recv ZSGSRD 36085
17-03-17 22:25:12.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:12.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:12.258 -07 000000626 INF: FPGA: Recv ZSGSRD 36085
17-03-17 22:25:12.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:12.268 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:25:12.268 -07 000000012 INF: FPGA: Recv ZPIEZORD 32195
17-03-17 22:25:12.278 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:12.278 -07 000000610 INF: Z Motor: Piezo is near 48.8 V (nominally 0 to 100 V), expect near 57.4 V, since DAC is at 5.738 V. Piezo Error = -8.6 V.
17-03-17 22:25:12.278 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.2 um, Read 10 ADC samples: Avg = 36090 (-171.3 uncal um), Error = 0.9 uncal um, Median = 36090 (-171.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36084 (-171.3 uncal um), Max = 36096 (-171.3 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 22:25:12.278 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36090, posNoise = 6, negNoise = 6
17-03-17 22:25:12.278 -07 000000610 INF: Z Motor: After move to -0.172154, error = -0.000019, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:25:12.278 -07 000000610 INF: Z Motor: Settle wait time = 1429 ms, measure time = 103 ms (allowed 150 ms), total time = 1532 ms
17-03-17 22:25:12.278 -07 000000610 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 22:25:12.328 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1585 ms
17-03-17 22:25:12.328 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:25:12.328 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.5625, Z-position -0.172173168207288. ----------
17-03-17 22:25:12.328 -07 000000610 INF: Cycle	63	Tile	3	Exposure Settings		A	452	G	217	T	217	C	452
17-03-17 22:25:12.328 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37430, sync = True, waitForSettling = True)
17-03-17 22:25:12.328 -07 000000610 INF: Z Motor: Moving to -0.171344 mm, started at -0.172173 mm, distance = 0.83 um
17-03-17 22:25:12.328 -07 000000610 INF: FPGA: Xmit ZDACW 37430\n [Z Motor]
17-03-17 22:25:12.328 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 22:25:12.338 -07 000000610 INF: FPGA: 'ZDACW 37430' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 22:25:12.338 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:25:12.338 -07 000000627 INF: FPGA: Recv ZDACR 37430
17-03-17 22:25:12.348 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:12.348 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:25:12.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:12.498 -07 000000627 INF: FPGA: Recv ZSGSRD 35971
17-03-17 22:25:12.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:12.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:12.508 -07 000000501 INF: FPGA: Recv ZSGSRD 35958
17-03-17 22:25:12.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:12.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:12.518 -07 000000501 INF: FPGA: Recv ZSGSRD 35964
17-03-17 22:25:12.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:12.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:12.528 -07 000000501 INF: FPGA: Recv ZSGSRD 35962
17-03-17 22:25:12.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:12.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:12.538 -07 000000626 INF: FPGA: Recv ZSGSRD 35968
17-03-17 22:25:12.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:12.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:12.548 -07 000000501 INF: FPGA: Recv ZSGSRD 35965
17-03-17 22:25:12.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:12.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:12.558 -07 000000501 INF: FPGA: Recv ZSGSRD 35959
17-03-17 22:25:12.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:12.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:12.568 -07 000000501 INF: FPGA: Recv ZSGSRD 35964
17-03-17 22:25:12.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:12.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:12.578 -07 000000501 INF: FPGA: Recv ZSGSRD 35964
17-03-17 22:25:12.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:12.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:12.588 -07 000000626 INF: FPGA: Recv ZSGSRD 35965
17-03-17 22:25:12.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:12.598 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:25:12.598 -07 000000475 INF: FPGA: Recv ZPIEZORD 32036
17-03-17 22:25:12.608 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:12.608 -07 000000610 INF: Z Motor: Piezo is near 48.4 V (nominally 0 to 100 V), expect near 57.1 V, since DAC is at 5.711 V. Piezo Error = -8.7 V.
17-03-17 22:25:12.608 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.3 um, Read 10 ADC samples: Avg = 35964 (-170.5 uncal um), Error = 0.9 uncal um, Median = 35964 (-170.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35958 (-170.4 uncal um), Max = 35971 (-170.5 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 22:25:12.608 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35964, posNoise = 7, negNoise = 6
17-03-17 22:25:12.608 -07 000000610 INF: Z Motor: After move to -0.171344, error = -0.000020, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:25:12.608 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-17 22:25:12.608 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:25:12.608 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:25:12.608 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:25:12.608 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:25:12.608 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:25:12.608 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:25:12.608 -07 000000459 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:25:12.608 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:25:12.608 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:25:12.608 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:25:12.608 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:25:12.608 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:25:12.618 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:25:12.618 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:25:12.618 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:25:12.618 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:25:12.628 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 12 ms.
17-03-17 22:25:12.628 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 18 ms.
17-03-17 22:25:12.628 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 12 ms.
17-03-17 22:25:12.628 -07 000000459 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 18 ms.
17-03-17 22:25:12.628 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 452 452 217 217 37607 150\n [Camera]
17-03-17 22:25:12.828 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:25:13.288 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 644
17-03-17 22:25:13.288 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 644
17-03-17 22:25:13.288 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:25:13.288 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 644
17-03-17 22:25:13.288 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 644
17-03-17 22:25:13.288 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:25:13.288 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:25:13.288 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 22:25:13.298 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:25:13.298 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 22:25:13.478 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37607 837
17-03-17 22:25:13.628 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP turning grn on 987
17-03-17 22:25:13.668 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 22:25:13.668 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 22:25:13.668 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:25:13.668 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 377 ms.
17-03-17 22:25:13.668 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-17 22:25:13.668 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:25:13.678 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:25:13.678 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 22:25:13.678 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:25:13.688 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 22:25:13.848 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1204
17-03-17 22:25:13.848 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1204
17-03-17 22:25:13.848 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:25:13.848 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1204
17-03-17 22:25:13.848 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1204
17-03-17 22:25:13.848 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:25:13.848 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:25:13.848 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-17 22:25:13.858 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:25:13.858 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-17 22:25:14.038 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP 1400
17-03-17 22:25:14.038 -07 000000012 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:25:14.038 -07 000000610 INF: FPGA: 'CAMDBLSNAP 452 452 217 217 37607 150' command took 2 ms to send, 1396 ms to get response, and 1407 ms overall
17-03-17 22:25:14.038 -07 000000610 INF: Skipping AutoFocus in Tile 4: adopting Best-Z from the cache: -0.171688
17-03-17 22:25:14.048 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.17169 mm
17-03-17 22:25:14.048 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:25:14.048 -07 000000012 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-17 22:25:14.048 -07 000000012 INF: Y Motor: Moving to 62.4026 mm, started at 61.5625 mm, delta = 0.8401 mm
17-03-17 22:25:14.048 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:25:14.048 -07 000000475 INF: Z Motor: Entering MoveAbsStepped (DAC = 37505, sync = True, waitForSettling = False)
17-03-17 22:25:14.048 -07 000000475 INF: Z Motor: Moving to -0.171687 mm, started at -0.171364 mm, distance = -0.32 um
17-03-17 22:25:14.048 -07 000000626 INF: FPGA: Recv YRDPOS 126080
17-03-17 22:25:14.058 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:25:14.058 -07 000000012 INF: Y Motor: Encoder = 126080 = motor step 98500.0 = 61.5625 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:25:14.058 -07 000000012 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:25:14.058 -07 000000012 INF: Y Motor: Moving 1344 steps-21
17-03-17 22:25:14.058 -07 000000475 INF: FPGA: Xmit ZDACW 37505\n [Z Motor]
17-03-17 22:25:14.058 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 22:25:14.068 -07 000000475 INF: FPGA: 'ZDACW 37505' command took 1 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 22:25:14.068 -07 000000475 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:25:14.068 -07 000000382 INF: FPGA: Recv ZDACR 37505
17-03-17 22:25:14.078 -07 000000012 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:25:14.078 -07 000000475 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:14.078 -07 000000475 INF: Z Motor: MoveAbsStepped took 26 ms (did NOT wait for settling yet))
17-03-17 22:25:14.238 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 382 ms.
17-03-17 22:25:14.238 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-17 22:25:14.238 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:25:14.248 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:25:14.248 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 397 ms.
17-03-17 22:25:14.248 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 22:25:14.248 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:25:14.258 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 22:25:14.258 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-17 22:25:14.258 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-17 22:25:14.448 -07 000000382 INF: FPGA: Recv YMVTILE
17-03-17 22:25:14.448 -07 000000012 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 22:25:14.488 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:25:14.498 -07 000000512 INF: FPGA: Recv YRDPOS 127784
17-03-17 22:25:14.498 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:25:14.498 -07 000000012 INF: Y Motor: Encoder = 127784 = motor step 99831.3 = 62.3945 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:25:14.498 -07 000000012 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-17 22:25:14.498 -07 000000012 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.840 mm, average velocity = 2.116 mm/sec
17-03-17 22:25:15.448 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:25:15.448 -07 000000382 INF: FPGA: Recv YRDPOS 127784
17-03-17 22:25:15.458 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:15.458 -07 000000012 INF: Y Motor: Encoder = 127784 = motor step 99831.3 = 62.3945 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:25:15.478 -07 000000012 INF: Y Motor: After move to 62.402607, error = -0.008076, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:25:15.478 -07 000000012 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:25:15.478 -07 000000012 INF: Y Motor: Moved to 62.3945 after 1431 ms (table move)
17-03-17 22:25:15.478 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.171687 mm (DAC = 37505)
17-03-17 22:25:15.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:15.488 -07 000000627 INF: FPGA: Recv ZSGSRD 36020
17-03-17 22:25:15.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 22:25:15.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:15.488 -07 000000431 INF: FPGA: Recv ZSGSRD 36016
17-03-17 22:25:15.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:15.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:15.498 -07 000000012 INF: FPGA: Recv ZSGSRD 36015
17-03-17 22:25:15.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:15.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:15.508 -07 000000475 INF: FPGA: Recv ZSGSRD 36013
17-03-17 22:25:15.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:15.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:15.518 -07 000000382 INF: FPGA: Recv ZSGSRD 36018
17-03-17 22:25:15.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:15.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:15.528 -07 000000501 INF: FPGA: Recv ZSGSRD 36015
17-03-17 22:25:15.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:15.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:15.538 -07 000000012 INF: FPGA: Recv ZSGSRD 36015
17-03-17 22:25:15.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:15.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:15.548 -07 000000012 INF: FPGA: Recv ZSGSRD 36014
17-03-17 22:25:15.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:15.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:15.558 -07 000000475 INF: FPGA: Recv ZSGSRD 36015
17-03-17 22:25:15.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:15.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:15.568 -07 000000627 INF: FPGA: Recv ZSGSRD 36013
17-03-17 22:25:15.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:15.578 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:25:15.578 -07 000000501 INF: FPGA: Recv ZPIEZORD 32088
17-03-17 22:25:15.588 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:15.588 -07 000000610 INF: Z Motor: Piezo is near 48.5 V (nominally 0 to 100 V), expect near 57.2 V, since DAC is at 5.723 V. Piezo Error = -8.7 V.
17-03-17 22:25:15.588 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.7 um, Read 10 ADC samples: Avg = 36015 (-170.8 uncal um), Error = 0.9 uncal um, Median = 36015 (-170.8 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 36013 (-170.8 uncal um), Max = 36020 (-170.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 2 (0.0 uncal um)
17-03-17 22:25:15.588 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36015, posNoise = 5, negNoise = 2
17-03-17 22:25:15.588 -07 000000610 INF: Z Motor: After move to -0.171687, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:25:15.588 -07 000000610 INF: Z Motor: Settle wait time = 1433 ms, measure time = 104 ms (allowed 150 ms), total time = 1537 ms
17-03-17 22:25:15.588 -07 000000610 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 22:25:15.638 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1589 ms
17-03-17 22:25:15.638 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:25:15.638 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.39453125, Z-position -0.171691352296656. ----------
17-03-17 22:25:15.638 -07 000000610 INF: Cycle	63	Tile	4	Exposure Settings		A	452	G	217	T	217	C	452
17-03-17 22:25:15.638 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37329, sync = True, waitForSettling = True)
17-03-17 22:25:15.638 -07 000000610 INF: Z Motor: Moving to -0.170881 mm, started at -0.171691 mm, distance = 0.81 um
17-03-17 22:25:15.638 -07 000000610 INF: FPGA: Xmit ZDACW 37329\n [Z Motor]
17-03-17 22:25:15.638 -07 000000475 INF: FPGA: Recv ZDACW
17-03-17 22:25:15.648 -07 000000610 INF: FPGA: 'ZDACW 37329' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 22:25:15.648 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:25:15.648 -07 000000382 INF: FPGA: Recv ZDACR 37329
17-03-17 22:25:15.658 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:15.658 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:25:15.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:15.808 -07 000000459 INF: FPGA: Recv ZSGSRD 35888
17-03-17 22:25:15.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:25:15.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:15.818 -07 000000626 INF: FPGA: Recv ZSGSRD 35890
17-03-17 22:25:15.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:15.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:15.828 -07 000000627 INF: FPGA: Recv ZSGSRD 35888
17-03-17 22:25:15.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:15.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:15.838 -07 000000382 INF: FPGA: Recv ZSGSRD 35885
17-03-17 22:25:15.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:15.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:15.848 -07 000000459 INF: FPGA: Recv ZSGSRD 35893
17-03-17 22:25:15.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:15.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:15.858 -07 000000431 INF: FPGA: Recv ZSGSRD 35889
17-03-17 22:25:15.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:15.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:15.868 -07 000000459 INF: FPGA: Recv ZSGSRD 35890
17-03-17 22:25:15.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:25:15.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:15.878 -07 000000382 INF: FPGA: Recv ZSGSRD 35889
17-03-17 22:25:15.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:15.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:15.888 -07 000000512 INF: FPGA: Recv ZSGSRD 35895
17-03-17 22:25:15.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:15.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:15.898 -07 000000012 INF: FPGA: Recv ZSGSRD 35891
17-03-17 22:25:15.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:15.908 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:25:15.908 -07 000000627 INF: FPGA: Recv ZPIEZORD 31928
17-03-17 22:25:15.918 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:15.918 -07 000000610 INF: Z Motor: Piezo is near 48.2 V (nominally 0 to 100 V), expect near 57.0 V, since DAC is at 5.696 V. Piezo Error = -8.8 V.
17-03-17 22:25:15.918 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.9 um, Read 10 ADC samples: Avg = 35890 (-170.0 uncal um), Error = 0.9 uncal um, Median = 35890 (-170.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35885 (-170.0 uncal um), Max = 35895 (-170.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 22:25:15.918 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35890, posNoise = 5, negNoise = 5
17-03-17 22:25:15.918 -07 000000610 INF: Z Motor: After move to -0.170881, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:25:15.918 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 22:25:15.918 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:25:15.918 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:25:15.918 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:25:15.918 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:25:15.918 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:25:15.918 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:25:15.918 -07 000000459 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:25:15.918 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:25:15.918 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:25:15.918 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:25:15.918 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:25:15.918 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:25:15.918 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 22:25:15.918 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:25:15.928 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 22:25:15.928 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:25:15.938 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 22:25:15.938 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 22:25:15.938 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-17 22:25:15.938 -07 000000459 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 22:25:15.938 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 452 452 217 217 37505 150\n [Camera]
17-03-17 22:25:16.138 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:25:16.598 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 644
17-03-17 22:25:16.598 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 644
17-03-17 22:25:16.598 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:25:16.598 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:25:16.598 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 22:25:16.598 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 644
17-03-17 22:25:16.598 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 644
17-03-17 22:25:16.598 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:25:16.598 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:25:16.598 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 22:25:16.788 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37505 837
17-03-17 22:25:16.938 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP turning grn on 990
17-03-17 22:25:16.968 -07 000000431 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:25:16.968 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 62. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=994, R2=1021, Total=2015. Warn if over 250 bubbles per interval.
17-03-17 22:25:16.968 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 372 ms.
17-03-17 22:25:16.968 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-17 22:25:16.968 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:25:16.978 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 22:25:16.978 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 22:25:16.978 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:25:16.978 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:25:16.978 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:25:16.978 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 22:25:16.988 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 22:25:17.158 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1204
17-03-17 22:25:17.158 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1204
17-03-17 22:25:17.158 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:25:17.158 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:25:17.158 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-17 22:25:17.158 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1204
17-03-17 22:25:17.158 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1204
17-03-17 22:25:17.158 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:25:17.158 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:25:17.158 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 22:25:17.348 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP 1397
17-03-17 22:25:17.348 -07 000000627 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:25:17.348 -07 000000610 INF: FPGA: 'CAMDBLSNAP 452 452 217 217 37505 150' command took 4 ms to send, 1392 ms to get response, and 1403 ms overall
17-03-17 22:25:17.348 -07 000000610 INF: Skipping AutoFocus in Tile 5: adopting Best-Z from the cache: -0.171475
17-03-17 22:25:17.348 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.17147 mm
17-03-17 22:25:17.348 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:25:17.348 -07 000000512 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-17 22:25:17.348 -07 000000512 INF: Y Motor: Moving to 63.2326 mm, started at 62.3945 mm, delta = 0.8381 mm
17-03-17 22:25:17.348 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:25:17.358 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 37459, sync = True, waitForSettling = False)
17-03-17 22:25:17.358 -07 000000431 INF: Z Motor: Moving to -0.171476 mm, started at -0.170888 mm, distance = -0.59 um
17-03-17 22:25:17.358 -07 000000431 INF: FPGA: Xmit ZDACW 37459\n [Z Motor]
17-03-17 22:25:17.358 -07 000000012 INF: FPGA: Recv YRDPOS 127784
17-03-17 22:25:17.358 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-17 22:25:17.358 -07 000000512 INF: Y Motor: Encoder = 127784 = motor step 99831.3 = 62.3945 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:25:17.358 -07 000000512 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:25:17.358 -07 000000512 INF: Y Motor: Moving 1341 steps-17
17-03-17 22:25:17.358 -07 000000459 INF: FPGA: Recv ZDACW
17-03-17 22:25:17.368 -07 000000512 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:25:17.368 -07 000000431 INF: FPGA: 'ZDACW 37459' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:17.378 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:25:17.378 -07 000000459 INF: FPGA: Recv ZDACR 37459
17-03-17 22:25:17.388 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:25:17.388 -07 000000431 INF: Z Motor: MoveAbsStepped took 29 ms (did NOT wait for settling yet))
17-03-17 22:25:17.418 -07 000000547 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 63, FrontChillerTemperature: 4.018051,
17-03-17 22:25:17.538 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 383 ms.
17-03-17 22:25:17.538 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-17 22:25:17.538 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:25:17.538 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 386 ms.
17-03-17 22:25:17.538 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 22:25:17.538 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:25:17.548 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 22:25:17.548 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 22:25:17.548 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 22:25:17.558 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 22:25:17.738 -07 000000459 INF: FPGA: Recv YMVTILE
17-03-17 22:25:17.738 -07 000000512 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 385 ms overall
17-03-17 22:25:17.788 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:25:17.788 -07 000000627 INF: FPGA: Recv YRDPOS 129480
17-03-17 22:25:17.798 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:25:17.798 -07 000000512 INF: Y Motor: Encoder = 129480 = motor step 101156.3 = 63.2227 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:25:17.798 -07 000000512 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-17 22:25:17.798 -07 000000512 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 385 ms, distance = 0.838 mm, average velocity = 2.177 mm/sec
17-03-17 22:25:18.748 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:25:18.748 -07 000000012 INF: FPGA: Recv YRDPOS 129480
17-03-17 22:25:18.758 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:18.758 -07 000000512 INF: Y Motor: Encoder = 129480 = motor step 101156.3 = 63.2227 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:25:18.778 -07 000000512 INF: Y Motor: After move to 63.232609, error = -0.009953, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:25:18.778 -07 000000512 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:25:18.778 -07 000000512 INF: Y Motor: Moved to 63.2227 after 1425 ms (table move)
17-03-17 22:25:18.778 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.171476 mm (DAC = 37459)
17-03-17 22:25:18.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:18.788 -07 000000438 INF: FPGA: Recv ZSGSRD 35979
17-03-17 22:25:18.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 22:25:18.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:18.788 -07 000000476 INF: FPGA: Recv ZSGSRD 35980
17-03-17 22:25:18.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:18.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:18.798 -07 000000512 INF: FPGA: Recv ZSGSRD 35982
17-03-17 22:25:18.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:18.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:18.808 -07 000000438 INF: FPGA: Recv ZSGSRD 35975
17-03-17 22:25:18.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:18.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:18.818 -07 000000438 INF: FPGA: Recv ZSGSRD 35989
17-03-17 22:25:18.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:18.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:18.828 -07 000000626 INF: FPGA: Recv ZSGSRD 35984
17-03-17 22:25:18.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:18.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:18.838 -07 000000438 INF: FPGA: Recv ZSGSRD 35987
17-03-17 22:25:18.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:18.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:18.848 -07 000000627 INF: FPGA: Recv ZSGSRD 35983
17-03-17 22:25:18.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:25:18.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:18.858 -07 000000438 INF: FPGA: Recv ZSGSRD 35976
17-03-17 22:25:18.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:18.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:18.868 -07 000000626 INF: FPGA: Recv ZSGSRD 35980
17-03-17 22:25:18.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:18.878 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:25:18.878 -07 000000547 INF: FPGA: Recv ZPIEZORD 32024
17-03-17 22:25:18.888 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:18.888 -07 000000610 INF: Z Motor: Piezo is near 48.4 V (nominally 0 to 100 V), expect near 57.2 V, since DAC is at 5.716 V. Piezo Error = -8.7 V.
17-03-17 22:25:18.888 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.5 um, Read 10 ADC samples: Avg = 35982 (-170.6 uncal um), Error = 0.9 uncal um, Median = 35981 (-170.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 35975 (-170.6 uncal um), Max = 35989 (-170.6 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 22:25:18.888 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35982, posNoise = 7, negNoise = 7
17-03-17 22:25:18.888 -07 000000610 INF: Z Motor: After move to -0.171476, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:25:18.888 -07 000000610 INF: Z Motor: Settle wait time = 1427 ms, measure time = 103 ms (allowed 150 ms), total time = 1530 ms
17-03-17 22:25:18.888 -07 000000610 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 22:25:18.938 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1584 ms
17-03-17 22:25:18.938 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:25:18.938 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.22265625, Z-position -0.171479353295978. ----------
17-03-17 22:25:18.938 -07 000000610 INF: Cycle	63	Tile	5	Exposure Settings		A	452	G	217	T	217	C	452
17-03-17 22:25:18.938 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37282, sync = True, waitForSettling = True)
17-03-17 22:25:18.938 -07 000000610 INF: Z Motor: Moving to -0.170666 mm, started at -0.171479 mm, distance = 0.81 um
17-03-17 22:25:18.938 -07 000000610 INF: FPGA: Xmit ZDACW 37282\n [Z Motor]
17-03-17 22:25:18.938 -07 000000476 INF: FPGA: Recv ZDACW
17-03-17 22:25:18.948 -07 000000610 INF: FPGA: 'ZDACW 37282' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 22:25:18.948 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:25:18.948 -07 000000475 INF: FPGA: Recv ZDACR 37282
17-03-17 22:25:18.958 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:18.958 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:25:19.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:19.108 -07 000000547 INF: FPGA: Recv ZSGSRD 35854
17-03-17 22:25:19.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:25:19.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:19.118 -07 000000626 INF: FPGA: Recv ZSGSRD 35862
17-03-17 22:25:19.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:19.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:19.128 -07 000000547 INF: FPGA: Recv ZSGSRD 35861
17-03-17 22:25:19.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:19.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:19.138 -07 000000626 INF: FPGA: Recv ZSGSRD 35855
17-03-17 22:25:19.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:19.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:19.148 -07 000000438 INF: FPGA: Recv ZSGSRD 35855
17-03-17 22:25:19.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:19.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:19.158 -07 000000476 INF: FPGA: Recv ZSGSRD 35854
17-03-17 22:25:19.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:19.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:19.168 -07 000000438 INF: FPGA: Recv ZSGSRD 35854
17-03-17 22:25:19.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:19.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:19.178 -07 000000382 INF: FPGA: Recv ZSGSRD 35853
17-03-17 22:25:19.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:25:19.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:19.188 -07 000000459 INF: FPGA: Recv ZSGSRD 35856
17-03-17 22:25:19.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:19.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:19.198 -07 000000475 INF: FPGA: Recv ZSGSRD 35858
17-03-17 22:25:19.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:19.208 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:25:19.208 -07 000000459 INF: FPGA: Recv ZPIEZORD 31856
17-03-17 22:25:19.218 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:19.218 -07 000000610 INF: Z Motor: Piezo is near 48.1 V (nominally 0 to 100 V), expect near 56.9 V, since DAC is at 5.689 V. Piezo Error = -8.8 V.
17-03-17 22:25:19.218 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.7 um, Read 10 ADC samples: Avg = 35856 (-169.8 uncal um), Error = 0.9 uncal um, Median = 35855 (-169.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35853 (-169.8 uncal um), Max = 35862 (-169.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 22:25:19.218 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35856, posNoise = 6, negNoise = 3
17-03-17 22:25:19.218 -07 000000610 INF: Z Motor: After move to -0.170666, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:25:19.218 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 22:25:19.218 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:25:19.218 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:25:19.218 -07 000000476 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:25:19.218 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:25:19.218 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:25:19.218 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:25:19.218 -07 000000431 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:25:19.218 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:25:19.218 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:25:19.218 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:25:19.218 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:25:19.218 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:25:19.228 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:25:19.228 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:25:19.228 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 22:25:19.228 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:25:19.238 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 22:25:19.238 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 22:25:19.238 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 22:25:19.238 -07 000000431 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 22:25:19.248 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 452 452 217 217 37459 150\n [Camera]
17-03-17 22:25:19.438 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:25:19.898 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 644
17-03-17 22:25:19.898 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 644
17-03-17 22:25:19.898 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:25:19.898 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:25:19.898 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start.
17-03-17 22:25:19.898 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 644
17-03-17 22:25:19.898 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 644
17-03-17 22:25:19.898 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:25:19.898 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:25:19.898 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) start.
17-03-17 22:25:20.088 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37459 837
17-03-17 22:25:20.238 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning grn on 990
17-03-17 22:25:20.278 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 22:25:20.278 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-17 22:25:20.278 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:25:20.278 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 22:25:20.278 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 22:25:20.278 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:25:20.278 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:25:20.278 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 22:25:20.278 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:25:20.288 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 22:25:20.458 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1204
17-03-17 22:25:20.458 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1204
17-03-17 22:25:20.458 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:25:20.578 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1204
17-03-17 22:25:20.578 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1204
17-03-17 22:25:20.578 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:25:20.588 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:25:20.588 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 22:25:20.588 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:25:20.588 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 22:25:20.648 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP 1396
17-03-17 22:25:20.648 -07 000000438 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:25:20.648 -07 000000610 INF: FPGA: 'CAMDBLSNAP 452 452 217 217 37459 150' command took 2 ms to send, 1394 ms to get response, and 1403 ms overall
17-03-17 22:25:20.648 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 22:25:20.648 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.22265625, Z-Position -0.170669902566116. ------
17-03-17 22:25:20.648 -07 000000547 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.17706 mm
17-03-17 22:25:20.648 -07 000000547 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:25:20.648 -07 000000482 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:25:20.658 -07 000000512 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-17 22:25:20.658 -07 000000512 INF: Y Motor: Moving to 64.0626 mm, started at 63.2227 mm, delta = 0.8400 mm
17-03-17 22:25:20.658 -07 000000459 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:25:20.658 -07 000000438 INF: Z Motor: Entering MoveAbsStepped (DAC = 38680, sync = True, waitForSettling = False)
17-03-17 22:25:20.658 -07 000000438 INF: Z Motor: Moving to -0.177066 mm, started at -0.170670 mm, distance = -6.40 um
17-03-17 22:25:20.668 -07 000000482 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:25:20.668 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:25:20.668 -07 000000459 INF: FPGA: Recv YRDPOS 129481
17-03-17 22:25:20.678 -07 000000438 INF: FPGA: Xmit ZDACW 38680\n [Z Motor]
17-03-17 22:25:20.678 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-17 22:25:20.678 -07 000000512 INF: Y Motor: Encoder = 129481 = motor step 101157.0 = 63.2231 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:25:20.678 -07 000000459 INF: FPGA: Recv ZDACW
17-03-17 22:25:20.678 -07 000000512 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:25:20.678 -07 000000512 INF: Y Motor: Moving 1343 steps-20
17-03-17 22:25:20.688 -07 000000482 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:25:20.688 -07 000000438 INF: FPGA: 'ZDACW 38680' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 22:25:20.698 -07 000000512 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:25:20.708 -07 000000438 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:25:20.708 -07 000000459 INF: FPGA: Recv ZDACR 38680
17-03-17 22:25:20.718 -07 000000438 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:25:20.718 -07 000000438 INF: Z Motor: MoveAbsStepped took 56 ms (did NOT wait for settling yet))
17-03-17 22:25:20.888 -07 000000438 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:25:20.888 -07 000000482 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 22:25:20.958 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 373 ms.
17-03-17 22:25:20.958 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-17 22:25:20.958 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:25:20.968 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 22:25:20.968 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-17 22:25:20.968 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:25:20.968 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:25:20.968 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:25:20.968 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 513 ms.
17-03-17 22:25:20.978 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 22:25:21.068 -07 000000438 INF: FPGA: Recv YMVTILE
17-03-17 22:25:21.068 -07 000000512 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 391 ms overall
17-03-17 22:25:21.118 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:25:21.128 -07 000000382 INF: FPGA: Recv YRDPOS 131186
17-03-17 22:25:21.128 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 22:25:21.128 -07 000000512 INF: Y Motor: Encoder = 131186 = motor step 102489.1 = 64.0557 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:25:21.128 -07 000000512 INF: Y Motor: Position error before settling (table move) = -14 encoder counts (-0.007 mm)
17-03-17 22:25:21.128 -07 000000512 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 393 ms, distance = 0.840 mm, average velocity = 2.137 mm/sec
17-03-17 22:25:21.968 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:25:21.968 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 62. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=994, R2=1021, Total=2015. Warn if over 250 bubbles per interval.
17-03-17 22:25:22.078 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:25:22.078 -07 000000438 INF: FPGA: Recv YRDPOS 131186
17-03-17 22:25:22.088 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:22.088 -07 000000512 INF: Y Motor: Encoder = 131186 = motor step 102489.1 = 64.0557 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:25:22.108 -07 000000512 INF: Y Motor: After move to 64.062607, error = -0.006943, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:25:22.108 -07 000000512 INF: Y Motor: Position error after settling (table move) = -14 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:25:22.108 -07 000000512 INF: Y Motor: Moved to 64.0557 after 1451 ms (table move)
17-03-17 22:25:22.108 -07 000000547 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177066 mm (DAC = 38680)
17-03-17 22:25:22.108 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:22.118 -07 000000626 INF: FPGA: Recv ZSGSRD 36852
17-03-17 22:25:22.118 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 22:25:22.118 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:22.118 -07 000000482 INF: FPGA: Recv ZSGSRD 36858
17-03-17 22:25:22.128 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:22.128 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:22.128 -07 000000438 INF: FPGA: Recv ZSGSRD 36858
17-03-17 22:25:22.138 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:22.138 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:22.138 -07 000000512 INF: FPGA: Recv ZSGSRD 36849
17-03-17 22:25:22.148 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:22.148 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:22.148 -07 000000438 INF: FPGA: Recv ZSGSRD 36857
17-03-17 22:25:22.158 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:22.158 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:22.158 -07 000000512 INF: FPGA: Recv ZSGSRD 36852
17-03-17 22:25:22.168 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:22.168 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:22.168 -07 000000438 INF: FPGA: Recv ZSGSRD 36845
17-03-17 22:25:22.178 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:22.178 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:22.178 -07 000000459 INF: FPGA: Recv ZSGSRD 36855
17-03-17 22:25:22.188 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:22.188 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:22.188 -07 000000482 INF: FPGA: Recv ZSGSRD 36854
17-03-17 22:25:22.198 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:22.198 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:22.198 -07 000000382 INF: FPGA: Recv ZSGSRD 36862
17-03-17 22:25:22.208 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:22.208 -07 000000547 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:25:22.208 -07 000000482 INF: FPGA: Recv ZPIEZORD 33178
17-03-17 22:25:22.218 -07 000000547 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:22.218 -07 000000547 INF: Z Motor: Piezo is near 50.9 V (nominally 0 to 100 V), expect near 59.0 V, since DAC is at 5.902 V. Piezo Error = -8.1 V.
17-03-17 22:25:22.218 -07 000000547 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.1 um, Read 10 ADC samples: Avg = 36854 (-176.2 uncal um), Error = 0.9 uncal um, Median = 36854 (-176.2 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 36845 (-176.1 uncal um), Max = 36862 (-176.2 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 22:25:22.218 -07 000000547 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36854, posNoise = 8, negNoise = 9
17-03-17 22:25:22.218 -07 000000547 INF: Z Motor: After move to -0.177066, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:25:22.218 -07 000000547 INF: Z Motor: Settle wait time = 1453 ms, measure time = 105 ms (allowed 150 ms), total time = 1558 ms
17-03-17 22:25:22.218 -07 000000547 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 22:25:22.268 -07 000000547 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1610 ms
17-03-17 22:25:22.268 -07 000000547 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:25:22.268 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:25:22.268 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:25:22.268 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:25:22.268 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:25:22.268 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:25:22.268 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:25:22.268 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:25:22.268 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:25:22.278 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:25:22.278 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:25:22.288 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 22:25:22.288 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 22:25:22.288 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:25:22.338 -07 000000382 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:25:22.538 -07 000000482 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:25:22.538 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:25:22.538 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:25:22.538 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1424593000, 0x0, 559484976) start.
17-03-17 22:25:22.578 -07 000000482 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:25:22.578 -07 000000512 INF: FPGA: Recv CAMSNAP
17-03-17 22:25:22.578 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 285 ms overall
17-03-17 22:25:22.668 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1424593000, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 22:25:22.668 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:25:22.668 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:25:22.668 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 22:25:22.678 -07 000000438 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:25:22.678 -07 000000547 INF: Autofocus start
17-03-17 22:25:22.678 -07 000000547 INF: MeasureProfile start
17-03-17 22:25:22.678 -07 000000459 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:25:22.688 -07 000000438 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:25:22.688 -07 000000438 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:25:22.688 -07 000000547 INF: MeasureProfile done
17-03-17 22:25:22.688 -07 000000547 INF: X=32  Z correction [um]=0.09220707
17-03-17 22:25:22.688 -07 000000547 INF: Autofocus finished
17-03-17 22:25:22.778 -07 000000547 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 63, FrontChillerTemperature: 4.016692,
17-03-17 22:25:22.888 -07 000000459 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:25:22.888 -07 000000438 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:25:22.888 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.0556640625, Z-position -0.177081266283593. ----------
17-03-17 22:25:22.888 -07 000000610 INF: Cycle	63	Tile	6	Exposure Settings		A	452	G	217	T	217	C	452
17-03-17 22:25:22.888 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37212, sync = True, waitForSettling = True)
17-03-17 22:25:22.888 -07 000000610 INF: Z Motor: Moving to -0.170346 mm, started at -0.177081 mm, distance = 6.74 um
17-03-17 22:25:22.898 -07 000000610 INF: FPGA: Xmit ZDACW 37212\n [Z Motor]
17-03-17 22:25:22.898 -07 000000459 INF: FPGA: Recv ZDACW
17-03-17 22:25:22.908 -07 000000610 INF: FPGA: 'ZDACW 37212' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:25:22.908 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:25:22.908 -07 000000438 INF: FPGA: Recv ZDACR 37212
17-03-17 22:25:22.918 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:25:22.918 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:25:23.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:23.068 -07 000000547 INF: FPGA: Recv ZSGSRD 35809
17-03-17 22:25:23.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:25:23.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:23.078 -07 000000459 INF: FPGA: Recv ZSGSRD 35808
17-03-17 22:25:23.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:23.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:23.088 -07 000000482 INF: FPGA: Recv ZSGSRD 35805
17-03-17 22:25:23.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:23.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:23.098 -07 000000512 INF: FPGA: Recv ZSGSRD 35809
17-03-17 22:25:23.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:23.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:23.108 -07 000000382 INF: FPGA: Recv ZSGSRD 35807
17-03-17 22:25:23.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:23.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:23.118 -07 000000438 INF: FPGA: Recv ZSGSRD 35807
17-03-17 22:25:23.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:23.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:23.128 -07 000000501 INF: FPGA: Recv ZSGSRD 35807
17-03-17 22:25:23.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:23.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:23.138 -07 000000512 INF: FPGA: Recv ZSGSRD 35810
17-03-17 22:25:23.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:23.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:23.148 -07 000000482 INF: FPGA: Recv ZSGSRD 35810
17-03-17 22:25:23.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:23.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:23.158 -07 000000438 INF: FPGA: Recv ZSGSRD 35805
17-03-17 22:25:23.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:23.168 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:25:23.168 -07 000000501 INF: FPGA: Recv ZPIEZORD 31767
17-03-17 22:25:23.178 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:23.178 -07 000000610 INF: Z Motor: Piezo is near 47.9 V (nominally 0 to 100 V), expect near 56.8 V, since DAC is at 5.678 V. Piezo Error = -8.9 V.
17-03-17 22:25:23.178 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.3 um, Read 10 ADC samples: Avg = 35808 (-169.5 uncal um), Error = 0.9 uncal um, Median = 35808 (-169.5 uncal um), StdDev = 2 (0.0 uncal um), Range = 5 (0.0 uncal um), Min = 35805 (-169.5 uncal um), Max = 35810 (-169.5 uncal um), Pos Noise = 2 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 22:25:23.178 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35808, posNoise = 2, negNoise = 3
17-03-17 22:25:23.178 -07 000000610 INF: Z Motor: After move to -0.170346, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:25:23.178 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 22:25:23.178 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:25:23.178 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:25:23.178 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:25:23.178 -07 000000482 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:25:23.178 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:25:23.178 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:25:23.178 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:25:23.178 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:25:23.178 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:25:23.178 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:25:23.178 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:25:23.178 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:25:23.188 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:25:23.188 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:25:23.188 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:25:23.188 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:25:23.198 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-17 22:25:23.198 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 22:25:23.198 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-17 22:25:23.198 -07 000000482 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 22:25:23.198 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 452 452 217 217 37389 150\n [Camera]
17-03-17 22:25:23.398 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:25:23.848 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 644
17-03-17 22:25:23.848 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 644
17-03-17 22:25:23.858 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:25:23.858 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:25:23.858 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-17 22:25:23.858 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 644
17-03-17 22:25:23.858 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 644
17-03-17 22:25:23.858 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:25:23.858 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:25:23.858 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-17 22:25:24.048 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37389 837
17-03-17 22:25:24.198 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning grn on 987
17-03-17 22:25:24.228 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 22:25:24.228 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 22:25:24.228 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:25:24.228 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 376 ms.
17-03-17 22:25:24.228 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 22:25:24.228 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:25:24.238 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:25:24.238 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 22:25:24.238 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:25:24.248 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 22:25:24.408 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1204
17-03-17 22:25:24.408 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1204
17-03-17 22:25:24.418 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:25:24.528 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1204
17-03-17 22:25:24.528 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1204
17-03-17 22:25:24.528 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:25:24.538 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:25:24.538 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 22:25:24.538 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:25:24.538 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 22:25:24.608 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP 1397
17-03-17 22:25:24.608 -07 000000627 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:25:24.608 -07 000000610 INF: FPGA: 'CAMDBLSNAP 452 452 217 217 37389 150' command took 2 ms to send, 1391 ms to get response, and 1403 ms overall
17-03-17 22:25:24.608 -07 000000610 INF: Skipping AutoFocus in Tile 7: adopting Best-Z from the cache: -0.170825
17-03-17 22:25:24.608 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.17083 mm
17-03-17 22:25:24.608 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:25:24.608 -07 000000512 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-17 22:25:24.608 -07 000000512 INF: Y Motor: Moving to 64.8926 mm, started at 64.0557 mm, delta = 0.8369 mm
17-03-17 22:25:24.608 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:25:24.608 -07 000000438 INF: Z Motor: Entering MoveAbsStepped (DAC = 37317, sync = True, waitForSettling = False)
17-03-17 22:25:24.608 -07 000000438 INF: Z Motor: Moving to -0.170826 mm, started at -0.170362 mm, distance = -0.46 um
17-03-17 22:25:24.608 -07 000000501 INF: FPGA: Recv YRDPOS 131187
17-03-17 22:25:24.618 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:25:24.618 -07 000000512 INF: Y Motor: Encoder = 131187 = motor step 102489.8 = 64.0562 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:25:24.618 -07 000000438 INF: FPGA: Xmit ZDACW 37317\n [Z Motor]
17-03-17 22:25:24.618 -07 000000626 INF: FPGA: Recv ZDACW
17-03-17 22:25:24.618 -07 000000512 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:25:24.618 -07 000000512 INF: Y Motor: Moving 1338 steps-14
17-03-17 22:25:24.628 -07 000000438 INF: FPGA: 'ZDACW 37317' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 22:25:24.628 -07 000000512 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:25:24.638 -07 000000438 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:25:24.638 -07 000000626 INF: FPGA: Recv ZDACR 37317
17-03-17 22:25:24.648 -07 000000438 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:25:24.648 -07 000000438 INF: Z Motor: MoveAbsStepped took 32 ms (did NOT wait for settling yet))
17-03-17 22:25:24.918 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 379 ms.
17-03-17 22:25:24.918 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 22:25:24.918 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:25:24.918 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 380 ms.
17-03-17 22:25:24.918 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-17 22:25:24.918 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:25:24.918 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:25:24.918 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 508 ms.
17-03-17 22:25:24.918 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:25:24.928 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 22:25:24.998 -07 000000627 INF: FPGA: Recv YMVTILE
17-03-17 22:25:24.998 -07 000000512 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 385 ms overall
17-03-17 22:25:25.038 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:25:25.048 -07 000000547 INF: FPGA: Recv YRDPOS 132869
17-03-17 22:25:25.058 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:25:25.058 -07 000000512 INF: Y Motor: Encoder = 132869 = motor step 103803.9 = 64.8774 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:25:25.058 -07 000000512 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-17 22:25:25.058 -07 000000512 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 385 ms, distance = 0.837 mm, average velocity = 2.174 mm/sec
17-03-17 22:25:26.008 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:25:26.008 -07 000000482 INF: FPGA: Recv YRDPOS 132869
17-03-17 22:25:26.018 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:25:26.018 -07 000000512 INF: Y Motor: Encoder = 132869 = motor step 103803.9 = 64.8774 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:25:26.038 -07 000000512 INF: Y Motor: After move to 64.892609, error = -0.015167, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:25:26.038 -07 000000512 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:25:26.038 -07 000000512 INF: Y Motor: Moved to 64.8774 after 1428 ms (table move)
17-03-17 22:25:26.038 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.170826 mm (DAC = 37317)
17-03-17 22:25:26.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:26.048 -07 000000459 INF: FPGA: Recv ZSGSRD 35887
17-03-17 22:25:26.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 22:25:26.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:26.048 -07 000000482 INF: FPGA: Recv ZSGSRD 35877
17-03-17 22:25:26.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:25:26.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:26.058 -07 000000482 INF: FPGA: Recv ZSGSRD 35882
17-03-17 22:25:26.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:26.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:26.068 -07 000000482 INF: FPGA: Recv ZSGSRD 35883
17-03-17 22:25:26.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:26.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:26.078 -07 000000482 INF: FPGA: Recv ZSGSRD 35887
17-03-17 22:25:26.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:26.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:26.088 -07 000000482 INF: FPGA: Recv ZSGSRD 35885
17-03-17 22:25:26.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:26.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:26.098 -07 000000482 INF: FPGA: Recv ZSGSRD 35871
17-03-17 22:25:26.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:26.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:26.108 -07 000000482 INF: FPGA: Recv ZSGSRD 35878
17-03-17 22:25:26.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:26.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:26.118 -07 000000482 INF: FPGA: Recv ZSGSRD 35885
17-03-17 22:25:26.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:26.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:26.128 -07 000000482 INF: FPGA: Recv ZSGSRD 35885
17-03-17 22:25:26.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:26.138 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:25:26.138 -07 000000438 INF: FPGA: Recv ZPIEZORD 31896
17-03-17 22:25:26.148 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:26.148 -07 000000610 INF: Z Motor: Piezo is near 48.1 V (nominally 0 to 100 V), expect near 56.9 V, since DAC is at 5.694 V. Piezo Error = -8.8 V.
17-03-17 22:25:26.148 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.8 um, Read 10 ADC samples: Avg = 35882 (-170.0 uncal um), Error = 0.9 uncal um, Median = 35884 (-170.0 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 35871 (-169.9 uncal um), Max = 35887 (-170.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 11 (0.1 uncal um)
17-03-17 22:25:26.148 -07 000000610 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35882, posNoise = 5, negNoise = 11
17-03-17 22:25:26.148 -07 000000610 INF: Z Motor: After move to -0.170826, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:25:26.148 -07 000000610 INF: Z Motor: Settle wait time = 1430 ms, measure time = 102 ms (allowed 150 ms), total time = 1532 ms
17-03-17 22:25:26.148 -07 000000610 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 22:25:26.198 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1586 ms
17-03-17 22:25:26.198 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:25:26.198 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87744140625, Z-position -0.170836932081802. ----------
17-03-17 22:25:26.198 -07 000000610 INF: Cycle	63	Tile	7	Exposure Settings		A	452	G	217	T	217	C	452
17-03-17 22:25:26.198 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37140, sync = True, waitForSettling = True)
17-03-17 22:25:26.198 -07 000000610 INF: Z Motor: Moving to -0.170016 mm, started at -0.170837 mm, distance = 0.82 um
17-03-17 22:25:26.198 -07 000000610 INF: FPGA: Xmit ZDACW 37140\n [Z Motor]
17-03-17 22:25:26.198 -07 000000547 INF: FPGA: Recv ZDACW
17-03-17 22:25:26.208 -07 000000610 INF: FPGA: 'ZDACW 37140' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 22:25:26.208 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:25:26.208 -07 000000501 INF: FPGA: Recv ZDACR 37140
17-03-17 22:25:26.218 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:25:26.218 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:25:26.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:26.368 -07 000000012 INF: FPGA: Recv ZSGSRD 35756
17-03-17 22:25:26.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:25:26.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:26.378 -07 000000501 INF: FPGA: Recv ZSGSRD 35757
17-03-17 22:25:26.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:26.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:26.388 -07 000000012 INF: FPGA: Recv ZSGSRD 35756
17-03-17 22:25:26.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:26.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:26.398 -07 000000438 INF: FPGA: Recv ZSGSRD 35759
17-03-17 22:25:26.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:26.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:26.408 -07 000000012 INF: FPGA: Recv ZSGSRD 35755
17-03-17 22:25:26.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:26.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:26.418 -07 000000438 INF: FPGA: Recv ZSGSRD 35750
17-03-17 22:25:26.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:26.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:26.428 -07 000000459 INF: FPGA: Recv ZSGSRD 35760
17-03-17 22:25:26.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:26.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:26.438 -07 000000012 INF: FPGA: Recv ZSGSRD 35756
17-03-17 22:25:26.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:26.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:26.448 -07 000000459 INF: FPGA: Recv ZSGSRD 35764
17-03-17 22:25:26.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:26.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:26.458 -07 000000501 INF: FPGA: Recv ZSGSRD 35761
17-03-17 22:25:26.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:26.468 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:25:26.468 -07 000000482 INF: FPGA: Recv ZPIEZORD 31769
17-03-17 22:25:26.478 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:26.478 -07 000000610 INF: Z Motor: Piezo is near 47.9 V (nominally 0 to 100 V), expect near 56.7 V, since DAC is at 5.667 V. Piezo Error = -8.8 V.
17-03-17 22:25:26.478 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.0 um, Read 10 ADC samples: Avg = 35757 (-169.2 uncal um), Error = 0.9 uncal um, Median = 35756 (-169.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 35750 (-169.1 uncal um), Max = 35764 (-169.2 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 22:25:26.478 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35757, posNoise = 7, negNoise = 7
17-03-17 22:25:26.478 -07 000000610 INF: Z Motor: After move to -0.170016, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:25:26.478 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 22:25:26.478 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:25:26.478 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:25:26.478 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:25:26.478 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:25:26.478 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:25:26.478 -07 000000482 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:25:26.478 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:25:26.478 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:25:26.478 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 22:25:26.478 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:25:26.478 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:25:26.478 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:25:26.488 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 6 ms.
17-03-17 22:25:26.488 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:25:26.488 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 22:25:26.488 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:25:26.498 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 22:25:26.498 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 22:25:26.498 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 22:25:26.498 -07 000000482 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 22:25:26.498 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 452 452 217 217 37317 150\n [Camera]
17-03-17 22:25:26.698 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:25:26.968 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:25:26.968 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 62. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=994, R2=1021, Total=2015. Warn if over 250 bubbles per interval.
17-03-17 22:25:27.148 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 644
17-03-17 22:25:27.148 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 644
17-03-17 22:25:27.148 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:25:27.148 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 644
17-03-17 22:25:27.148 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 644
17-03-17 22:25:27.158 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:25:27.158 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:25:27.158 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-17 22:25:27.168 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:25:27.168 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 1439269080, 0x0, 391868352) start.
17-03-17 22:25:27.348 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37317 838
17-03-17 22:25:27.488 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning grn on 987
17-03-17 22:25:27.528 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 377 ms.
17-03-17 22:25:27.528 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-17 22:25:27.528 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:25:27.538 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:25:27.548 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 22:25:27.548 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 1439269080, 0x0, 391868352) end. Duration was 382 ms.
17-03-17 22:25:27.548 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 22:25:27.548 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:25:27.558 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:25:27.558 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 22:25:27.718 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1207
17-03-17 22:25:27.718 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1207
17-03-17 22:25:27.718 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:25:27.718 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:25:27.718 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start.
17-03-17 22:25:27.718 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1208
17-03-17 22:25:27.718 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1208
17-03-17 22:25:27.718 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:25:27.838 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:25:27.838 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 22:25:27.898 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP 1397
17-03-17 22:25:27.898 -07 000000475 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:25:27.898 -07 000000610 INF: FPGA: 'CAMDBLSNAP 452 452 217 217 37317 150' command took 2 ms to send, 1398 ms to get response, and 1403 ms overall
17-03-17 22:25:27.908 -07 000000610 INF: Skipping AutoFocus in Tile 8: adopting Best-Z from the cache: -0.170468
17-03-17 22:25:27.908 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.17047 mm
17-03-17 22:25:27.908 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:25:27.908 -07 000000012 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-17 22:25:27.908 -07 000000012 INF: Y Motor: Moving to 65.7226 mm, started at 64.8774 mm, delta = 0.8452 mm
17-03-17 22:25:27.908 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:25:27.908 -07 000000501 INF: Z Motor: Entering MoveAbsStepped (DAC = 37239, sync = True, waitForSettling = False)
17-03-17 22:25:27.908 -07 000000501 INF: Z Motor: Moving to -0.170469 mm, started at -0.170034 mm, distance = -0.44 um
17-03-17 22:25:27.908 -07 000000475 INF: FPGA: Recv YRDPOS 132870
17-03-17 22:25:27.918 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:25:27.918 -07 000000012 INF: Y Motor: Encoder = 132870 = motor step 103804.7 = 64.8779 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:25:27.918 -07 000000501 INF: FPGA: Xmit ZDACW 37239\n [Z Motor]
17-03-17 22:25:27.918 -07 000000431 INF: FPGA: Recv ZDACW
17-03-17 22:25:27.918 -07 000000012 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:25:27.918 -07 000000012 INF: Y Motor: Moving 1351 steps-31
17-03-17 22:25:27.928 -07 000000501 INF: FPGA: 'ZDACW 37239' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 22:25:27.928 -07 000000501 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:25:27.928 -07 000000475 INF: FPGA: Recv ZDACR 37239
17-03-17 22:25:27.938 -07 000000012 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:25:27.938 -07 000000501 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:27.938 -07 000000501 INF: Z Motor: MoveAbsStepped took 25 ms (did NOT wait for settling yet))
17-03-17 22:25:28.098 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 22:25:28.098 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 22:25:28.098 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:25:28.098 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:25:28.098 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 22:25:28.158 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 63, FrontChillerTemperature: 4.000345,
17-03-17 22:25:28.208 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 373 ms.
17-03-17 22:25:28.208 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-17 22:25:28.208 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:25:28.218 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:25:28.218 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 503 ms.
17-03-17 22:25:28.308 -07 000000482 INF: FPGA: Recv YMVTILE
17-03-17 22:25:28.308 -07 000000012 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-17 22:25:28.348 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:25:28.358 -07 000000547 INF: FPGA: Recv YRDPOS 134580
17-03-17 22:25:28.358 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 22:25:28.358 -07 000000012 INF: Y Motor: Encoder = 134580 = motor step 105140.6 = 65.7129 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:25:28.358 -07 000000012 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-17 22:25:28.358 -07 000000012 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.845 mm, average velocity = 2.145 mm/sec
17-03-17 22:25:29.308 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:25:29.308 -07 000000482 INF: FPGA: Recv YRDPOS 134580
17-03-17 22:25:29.318 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:29.318 -07 000000012 INF: Y Motor: Encoder = 134580 = motor step 105140.6 = 65.7129 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:25:29.348 -07 000000012 INF: Y Motor: After move to 65.722610, error = -0.009720, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:25:29.348 -07 000000012 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:25:29.348 -07 000000012 INF: Y Motor: Moved to 65.7129 after 1438 ms (table move)
17-03-17 22:25:29.348 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.170469 mm (DAC = 37239)
17-03-17 22:25:29.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:29.348 -07 000000012 INF: FPGA: Recv ZSGSRD 35830
17-03-17 22:25:29.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 22:25:29.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:29.358 -07 000000547 INF: FPGA: Recv ZSGSRD 35829
17-03-17 22:25:29.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:29.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:29.368 -07 000000459 INF: FPGA: Recv ZSGSRD 35829
17-03-17 22:25:29.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:29.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:29.388 -07 000000476 INF: FPGA: Recv ZSGSRD 35826
17-03-17 22:25:29.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:25:29.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:29.398 -07 000000501 INF: FPGA: Recv ZSGSRD 35823
17-03-17 22:25:29.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:29.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:29.408 -07 000000431 INF: FPGA: Recv ZSGSRD 35818
17-03-17 22:25:29.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:29.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:29.418 -07 000000438 INF: FPGA: Recv ZSGSRD 35826
17-03-17 22:25:29.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:29.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:29.428 -07 000000438 INF: FPGA: Recv ZSGSRD 35827
17-03-17 22:25:29.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:29.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:29.438 -07 000000476 INF: FPGA: Recv ZSGSRD 35832
17-03-17 22:25:29.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:29.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:29.448 -07 000000431 INF: FPGA: Recv ZSGSRD 35828
17-03-17 22:25:29.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:29.458 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:25:29.458 -07 000000512 INF: FPGA: Recv ZPIEZORD 31855
17-03-17 22:25:29.468 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:29.468 -07 000000610 INF: Z Motor: Piezo is near 48.1 V (nominally 0 to 100 V), expect near 56.8 V, since DAC is at 5.682 V. Piezo Error = -8.8 V.
17-03-17 22:25:29.468 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.5 um, Read 10 ADC samples: Avg = 35827 (-169.6 uncal um), Error = 0.9 uncal um, Median = 35828 (-169.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 35818 (-169.6 uncal um), Max = 35832 (-169.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 22:25:29.468 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35827, posNoise = 5, negNoise = 9
17-03-17 22:25:29.468 -07 000000610 INF: Z Motor: After move to -0.170469, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:25:29.468 -07 000000610 INF: Z Motor: Settle wait time = 1439 ms, measure time = 116 ms (allowed 150 ms), total time = 1555 ms
17-03-17 22:25:29.468 -07 000000610 INF: Z Motor: Waiting extra 34 ms after reading position to reach expected total of 150 ms
17-03-17 22:25:29.508 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1599 ms
17-03-17 22:25:29.508 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:25:29.508 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.712890625, Z-position -0.170483600414005. ----------
17-03-17 22:25:29.508 -07 000000610 INF: Cycle	63	Tile	8	Exposure Settings		A	452	G	217	T	217	C	452
17-03-17 22:25:29.508 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37062, sync = True, waitForSettling = True)
17-03-17 22:25:29.508 -07 000000610 INF: Z Motor: Moving to -0.169659 mm, started at -0.170484 mm, distance = 0.82 um
17-03-17 22:25:29.508 -07 000000610 INF: FPGA: Xmit ZDACW 37062\n [Z Motor]
17-03-17 22:25:29.508 -07 000000476 INF: FPGA: Recv ZDACW
17-03-17 22:25:29.518 -07 000000610 INF: FPGA: 'ZDACW 37062' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 22:25:29.518 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:25:29.518 -07 000000424 INF: FPGA: Recv ZDACR 37062
17-03-17 22:25:29.528 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:29.528 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:25:29.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:29.678 -07 000000438 INF: FPGA: Recv ZSGSRD 35702
17-03-17 22:25:29.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:25:29.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:29.698 -07 000000424 INF: FPGA: Recv ZSGSRD 35700
17-03-17 22:25:29.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:25:29.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:29.708 -07 000000501 INF: FPGA: Recv ZSGSRD 35697
17-03-17 22:25:29.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:29.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:29.738 -07 000000438 INF: FPGA: Recv ZSGSRD 35701
17-03-17 22:25:29.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:25:29.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:29.748 -07 000000547 INF: FPGA: Recv ZSGSRD 35699
17-03-17 22:25:29.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:29.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:29.768 -07 000000512 INF: FPGA: Recv ZSGSRD 35701
17-03-17 22:25:29.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:25:29.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:29.778 -07 000000424 INF: FPGA: Recv ZSGSRD 35698
17-03-17 22:25:29.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:29.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:29.798 -07 000000627 INF: FPGA: Recv ZSGSRD 35697
17-03-17 22:25:29.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:25:29.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:29.808 -07 000000475 INF: FPGA: Recv ZSGSRD 35701
17-03-17 22:25:29.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:29.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:29.818 -07 000000512 INF: FPGA: Recv ZSGSRD 35699
17-03-17 22:25:29.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:29.828 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:25:29.828 -07 000000627 INF: FPGA: Recv ZPIEZORD 31712
17-03-17 22:25:29.838 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:25:29.838 -07 000000610 INF: Z Motor: Piezo is near 47.7 V (nominally 0 to 100 V), expect near 56.6 V, since DAC is at 5.655 V. Piezo Error = -8.8 V.
17-03-17 22:25:29.838 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.7 um, Read 10 ADC samples: Avg = 35700 (-168.8 uncal um), Error = 0.9 uncal um, Median = 35700 (-168.8 uncal um), StdDev = 2 (0.0 uncal um), Range = 5 (0.0 uncal um), Min = 35697 (-168.8 uncal um), Max = 35702 (-168.8 uncal um), Pos Noise = 2 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 22:25:29.838 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35700, posNoise = 2, negNoise = 3
17-03-17 22:25:29.838 -07 000000610 INF: Z Motor: After move to -0.169659, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:25:29.838 -07 000000610 INF: Z Motor: MoveAbsStepped took 326 ms)
17-03-17 22:25:29.838 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:25:29.838 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:25:29.838 -07 000000482 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:25:29.838 -07 000000476 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:25:29.838 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:25:29.838 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:25:29.838 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:25:29.838 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:25:29.838 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 22:25:29.838 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:25:29.838 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 22:25:29.838 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:25:29.848 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:25:29.848 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:25:29.848 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:25:29.848 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:25:29.858 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 22:25:29.858 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 22:25:29.858 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 22:25:29.858 -07 000000476 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 22:25:29.858 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 452 452 217 217 37239 150\n [Camera]
17-03-17 22:25:30.058 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:25:30.518 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 644
17-03-17 22:25:30.518 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 644
17-03-17 22:25:30.518 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:25:30.518 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 644
17-03-17 22:25:30.518 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 644
17-03-17 22:25:30.518 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:25:30.518 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:25:30.518 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 22:25:30.518 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:25:30.528 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 22:25:30.708 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37239 837
17-03-17 22:25:30.858 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning grn on 987
17-03-17 22:25:30.888 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 372 ms.
17-03-17 22:25:30.888 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 372 ms.
17-03-17 22:25:30.888 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:25:30.898 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 370 ms.
17-03-17 22:25:30.898 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-17 22:25:30.898 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:25:30.898 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:25:30.898 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 22:25:30.898 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:25:30.908 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 22:25:31.078 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1204
17-03-17 22:25:31.078 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1204
17-03-17 22:25:31.078 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:25:31.078 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1204
17-03-17 22:25:31.078 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1204
17-03-17 22:25:31.078 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:25:31.078 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:25:31.078 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) start.
17-03-17 22:25:31.078 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:25:31.078 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-17 22:25:31.268 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP 1397
17-03-17 22:25:31.268 -07 000000482 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:25:31.268 -07 000000610 INF: FPGA: 'CAMDBLSNAP 452 452 217 217 37239 150' command took 2 ms to send, 1392 ms to get response, and 1403 ms overall
17-03-17 22:25:31.268 -07 000000610 INF: Skipping AutoFocus in Tile 9: adopting Best-Z from the cache: -0.169981
17-03-17 22:25:31.268 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.16998 mm
17-03-17 22:25:31.268 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:25:31.268 -07 000000501 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-17 22:25:31.268 -07 000000501 INF: Y Motor: Moving to 66.5526 mm, started at 65.7129 mm, delta = 0.8397 mm
17-03-17 22:25:31.268 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:25:31.268 -07 000000424 INF: Z Motor: Entering MoveAbsStepped (DAC = 37132, sync = True, waitForSettling = False)
17-03-17 22:25:31.268 -07 000000424 INF: Z Motor: Moving to -0.169979 mm, started at -0.169668 mm, distance = -0.31 um
17-03-17 22:25:31.278 -07 000000424 INF: FPGA: Xmit ZDACW 37132\n [Z Motor]
17-03-17 22:25:31.278 -07 000000482 INF: FPGA: Recv YRDPOS 134580
17-03-17 22:25:31.278 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 22:25:31.278 -07 000000501 INF: Y Motor: Encoder = 134580 = motor step 105140.6 = 65.7129 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:25:31.278 -07 000000501 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:25:31.278 -07 000000501 INF: Y Motor: Moving 1344 steps-20
17-03-17 22:25:31.278 -07 000000482 INF: FPGA: Recv ZDACW
17-03-17 22:25:31.288 -07 000000424 INF: FPGA: 'ZDACW 37132' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:25:31.288 -07 000000501 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:25:31.298 -07 000000424 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:25:31.458 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 22:25:31.458 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 22:25:31.458 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:25:31.458 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 374 ms.
17-03-17 22:25:31.458 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 375 ms.
17-03-17 22:25:31.458 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:25:31.458 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 22:25:31.468 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 22:25:31.468 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 22:25:31.468 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 22:25:31.478 -07 000000476 INF: FPGA: Recv ZDACR 37132
17-03-17 22:25:31.478 -07 000000424 INF: FPGA: 'ZDACR' command took 0 ms to send, 171 ms to get response, and 191 ms overall
17-03-17 22:25:31.478 -07 000000424 INF: Z Motor: MoveAbsStepped took 202 ms (did NOT wait for settling yet))
17-03-17 22:25:31.658 -07 000000476 INF: FPGA: Recv YMVTILE
17-03-17 22:25:31.658 -07 000000501 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 386 ms overall
17-03-17 22:25:31.698 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:25:31.708 -07 000000476 INF: FPGA: Recv YRDPOS 136270
17-03-17 22:25:31.708 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 22:25:31.708 -07 000000501 INF: Y Motor: Encoder = 136270 = motor step 106460.9 = 66.5381 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:25:31.708 -07 000000501 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-17 22:25:31.708 -07 000000501 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 386 ms, distance = 0.840 mm, average velocity = 2.175 mm/sec
17-03-17 22:25:31.968 -07 000000476 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:25:31.968 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 62. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=994, R2=1021, Total=2015. Warn if over 250 bubbles per interval.
17-03-17 22:25:32.658 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:25:32.658 -07 000000424 INF: FPGA: Recv YRDPOS 136270
17-03-17 22:25:32.668 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:25:32.668 -07 000000501 INF: Y Motor: Encoder = 136270 = motor step 106460.9 = 66.5381 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:25:32.688 -07 000000501 INF: Y Motor: After move to 66.552605, error = -0.014519, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:25:32.688 -07 000000501 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:25:32.688 -07 000000501 INF: Y Motor: Moved to 66.5381 after 1416 ms (table move)
17-03-17 22:25:32.688 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.169979 mm (DAC = 37132)
17-03-17 22:25:32.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:32.698 -07 000000424 INF: FPGA: Recv ZSGSRD 35750
17-03-17 22:25:32.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 22:25:32.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:32.698 -07 000000501 INF: FPGA: Recv ZSGSRD 35742
17-03-17 22:25:32.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:25:32.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:32.708 -07 000000012 INF: FPGA: Recv ZSGSRD 35756
17-03-17 22:25:32.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:32.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:32.718 -07 000000501 INF: FPGA: Recv ZSGSRD 35757
17-03-17 22:25:32.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:32.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:32.728 -07 000000012 INF: FPGA: Recv ZSGSRD 35751
17-03-17 22:25:32.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:32.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:32.738 -07 000000424 INF: FPGA: Recv ZSGSRD 35749
17-03-17 22:25:32.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:32.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:32.748 -07 000000501 INF: FPGA: Recv ZSGSRD 35752
17-03-17 22:25:32.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:32.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:32.758 -07 000000424 INF: FPGA: Recv ZSGSRD 35746
17-03-17 22:25:32.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:32.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:32.768 -07 000000012 INF: FPGA: Recv ZSGSRD 35746
17-03-17 22:25:32.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:25:32.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:32.778 -07 000000501 INF: FPGA: Recv ZSGSRD 35746
17-03-17 22:25:32.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:32.788 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:25:32.788 -07 000000627 INF: FPGA: Recv ZPIEZORD 31796
17-03-17 22:25:32.798 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:32.798 -07 000000610 INF: Z Motor: Piezo is near 47.9 V (nominally 0 to 100 V), expect near 56.7 V, since DAC is at 5.666 V. Piezo Error = -8.7 V.
17-03-17 22:25:32.798 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.0 um, Read 10 ADC samples: Avg = 35750 (-169.1 uncal um), Error = 0.9 uncal um, Median = 35750 (-169.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 35742 (-169.1 uncal um), Max = 35757 (-169.2 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 22:25:32.798 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35750, posNoise = 7, negNoise = 8
17-03-17 22:25:32.798 -07 000000610 INF: Z Motor: After move to -0.169979, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:25:32.798 -07 000000610 INF: Z Motor: Settle wait time = 1418 ms, measure time = 103 ms (allowed 150 ms), total time = 1521 ms
17-03-17 22:25:32.798 -07 000000610 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 22:25:32.848 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1574 ms
17-03-17 22:25:32.848 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:25:32.848 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.5380859375, Z-position -0.169988936079089. ----------
17-03-17 22:25:32.848 -07 000000610 INF: Cycle	63	Tile	9	Exposure Settings		A	452	G	217	T	217	C	452
17-03-17 22:25:32.848 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36956, sync = True, waitForSettling = True)
17-03-17 22:25:32.848 -07 000000610 INF: Z Motor: Moving to -0.169174 mm, started at -0.169989 mm, distance = 0.82 um
17-03-17 22:25:32.848 -07 000000610 INF: FPGA: Xmit ZDACW 36956\n [Z Motor]
17-03-17 22:25:32.848 -07 000000627 INF: FPGA: Recv ZDACW
17-03-17 22:25:32.858 -07 000000610 INF: FPGA: 'ZDACW 36956' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 22:25:32.858 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:25:32.858 -07 000000476 INF: FPGA: Recv ZDACR 36956
17-03-17 22:25:32.868 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:32.868 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:25:33.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:33.018 -07 000000626 INF: FPGA: Recv ZSGSRD 35626
17-03-17 22:25:33.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:25:33.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:33.028 -07 000000476 INF: FPGA: Recv ZSGSRD 35628
17-03-17 22:25:33.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:33.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:33.038 -07 000000627 INF: FPGA: Recv ZSGSRD 35621
17-03-17 22:25:33.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:33.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:33.048 -07 000000501 INF: FPGA: Recv ZSGSRD 35626
17-03-17 22:25:33.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:33.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:33.058 -07 000000627 INF: FPGA: Recv ZSGSRD 35624
17-03-17 22:25:33.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:33.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:33.068 -07 000000012 INF: FPGA: Recv ZSGSRD 35627
17-03-17 22:25:33.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:33.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:33.078 -07 000000424 INF: FPGA: Recv ZSGSRD 35623
17-03-17 22:25:33.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:33.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:33.088 -07 000000012 INF: FPGA: Recv ZSGSRD 35623
17-03-17 22:25:33.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:33.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:33.098 -07 000000627 INF: FPGA: Recv ZSGSRD 35626
17-03-17 22:25:33.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:33.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:33.108 -07 000000626 INF: FPGA: Recv ZSGSRD 35627
17-03-17 22:25:33.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:33.118 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:25:33.118 -07 000000627 INF: FPGA: Recv ZPIEZORD 31626
17-03-17 22:25:33.128 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:33.128 -07 000000610 INF: Z Motor: Piezo is near 47.6 V (nominally 0 to 100 V), expect near 56.4 V, since DAC is at 5.639 V. Piezo Error = -8.8 V.
17-03-17 22:25:33.128 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.2 um, Read 10 ADC samples: Avg = 35625 (-168.3 uncal um), Error = 0.9 uncal um, Median = 35626 (-168.3 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 35621 (-168.3 uncal um), Max = 35628 (-168.3 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 22:25:33.128 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35625, posNoise = 3, negNoise = 4
17-03-17 22:25:33.128 -07 000000610 INF: Z Motor: After move to -0.169174, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:25:33.128 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-17 22:25:33.128 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:25:33.128 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:25:33.128 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:25:33.128 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:25:33.128 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:25:33.128 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:25:33.128 -07 000000627 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:25:33.128 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:25:33.128 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 22:25:33.128 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:25:33.128 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:25:33.128 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:25:33.138 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 22:25:33.138 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:25:33.138 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:25:33.138 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:25:33.148 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 22:25:33.148 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 22:25:33.148 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 22:25:33.148 -07 000000627 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 22:25:33.158 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 452 452 217 217 37132 150\n [Camera]
17-03-17 22:25:33.348 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:25:33.518 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 63, FrontChillerTemperature: 3.971733,
17-03-17 22:25:33.808 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 644
17-03-17 22:25:33.808 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 644
17-03-17 22:25:33.808 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:25:33.808 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:25:33.808 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 22:25:33.808 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 644
17-03-17 22:25:33.808 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 644
17-03-17 22:25:33.808 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:25:33.808 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:25:33.808 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 22:25:33.998 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37132 837
17-03-17 22:25:34.148 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP turning grn on 987
17-03-17 22:25:34.188 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 22:25:34.188 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-17 22:25:34.188 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:25:34.188 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 22:25:34.188 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 22:25:34.188 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:25:34.188 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:25:34.188 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 22:25:34.188 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:25:34.198 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 22:25:34.368 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1204
17-03-17 22:25:34.368 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1204
17-03-17 22:25:34.368 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:25:34.368 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:25:34.368 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-17 22:25:34.368 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1204
17-03-17 22:25:34.368 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1204
17-03-17 22:25:34.368 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:25:34.368 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:25:34.368 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 22:25:34.558 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP 1396
17-03-17 22:25:34.558 -07 000000431 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:25:34.558 -07 000000610 INF: FPGA: 'CAMDBLSNAP 452 452 217 217 37132 150' command took 2 ms to send, 1394 ms to get response, and 1403 ms overall
17-03-17 22:25:34.558 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 22:25:34.558 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.5380859375, Z-Position -0.169185909561369. ------
17-03-17 22:25:34.568 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:25:34.568 -07 000000626 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.17599 mm
17-03-17 22:25:34.568 -07 000000626 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:25:34.568 -07 000000512 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-17 22:25:34.568 -07 000000512 INF: Y Motor: Moving to 67.3826 mm, started at 66.5381 mm, delta = 0.8445 mm
17-03-17 22:25:34.568 -07 000000012 INF: Z Motor: Entering MoveAbsStepped (DAC = 38445, sync = True, waitForSettling = False)
17-03-17 22:25:34.568 -07 000000012 INF: Z Motor: Moving to -0.175990 mm, started at -0.169186 mm, distance = -6.80 um
17-03-17 22:25:34.568 -07 000000459 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:25:34.578 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:25:34.578 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:25:34.578 -07 000000459 INF: FPGA: Recv YRDPOS 136270
17-03-17 22:25:34.588 -07 000000012 INF: FPGA: Xmit ZDACW 38445\n [Z Motor]
17-03-17 22:25:34.588 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 22:25:34.588 -07 000000512 INF: Y Motor: Encoder = 136270 = motor step 106460.9 = 66.5381 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:25:34.588 -07 000000512 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:25:34.588 -07 000000512 INF: Y Motor: Moving 1351 steps-30
17-03-17 22:25:34.588 -07 000000547 INF: FPGA: Recv ZDACW
17-03-17 22:25:34.598 -07 000000012 INF: FPGA: 'ZDACW 38445' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-17 22:25:34.598 -07 000000501 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:25:34.608 -07 000000512 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:25:34.618 -07 000000012 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:25:34.618 -07 000000547 INF: FPGA: Recv ZDACR 38445
17-03-17 22:25:34.628 -07 000000012 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:25:34.628 -07 000000012 INF: Z Motor: MoveAbsStepped took 55 ms (did NOT wait for settling yet))
17-03-17 22:25:34.748 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 22:25:34.748 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 22:25:34.748 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:25:34.748 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 22:25:34.748 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 22:25:34.748 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:25:34.758 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:25:34.758 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 22:25:34.758 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:25:34.758 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 22:25:34.798 -07 000000475 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:25:34.798 -07 000000501 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 199 ms to get response, and 228 ms overall
17-03-17 22:25:34.978 -07 000000476 INF: FPGA: Recv YMVTILE
17-03-17 22:25:34.978 -07 000000512 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 22:25:35.018 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:25:35.028 -07 000000476 INF: FPGA: Recv YRDPOS 137976
17-03-17 22:25:35.028 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 22:25:35.028 -07 000000512 INF: Y Motor: Encoder = 137976 = motor step 107793.8 = 67.3711 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:25:35.028 -07 000000512 INF: Y Motor: Position error before settling (table move) = -24 encoder counts (-0.012 mm)
17-03-17 22:25:35.028 -07 000000512 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.845 mm, average velocity = 2.127 mm/sec
17-03-17 22:25:35.978 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:25:35.978 -07 000000431 INF: FPGA: Recv YRDPOS 137976
17-03-17 22:25:35.988 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:35.988 -07 000000512 INF: Y Motor: Encoder = 137976 = motor step 107793.8 = 67.3711 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:25:36.008 -07 000000512 INF: Y Motor: After move to 67.382607, error = -0.011513, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:25:36.008 -07 000000512 INF: Y Motor: Position error after settling (table move) = -24 encoder counts (-0.012 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:25:36.008 -07 000000512 INF: Y Motor: Moved to 67.3711 after 1440 ms (table move)
17-03-17 22:25:36.008 -07 000000626 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175990 mm (DAC = 38445)
17-03-17 22:25:36.008 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:36.018 -07 000000476 INF: FPGA: Recv ZSGSRD 36697
17-03-17 22:25:36.018 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 22:25:36.018 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:36.018 -07 000000476 INF: FPGA: Recv ZSGSRD 36685
17-03-17 22:25:36.028 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:25:36.028 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:36.028 -07 000000476 INF: FPGA: Recv ZSGSRD 36686
17-03-17 22:25:36.038 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:36.038 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:36.038 -07 000000431 INF: FPGA: Recv ZSGSRD 36684
17-03-17 22:25:36.048 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:36.048 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:36.048 -07 000000476 INF: FPGA: Recv ZSGSRD 36687
17-03-17 22:25:36.058 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:36.058 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:36.058 -07 000000476 INF: FPGA: Recv ZSGSRD 36686
17-03-17 22:25:36.068 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:36.068 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:36.068 -07 000000476 INF: FPGA: Recv ZSGSRD 36680
17-03-17 22:25:36.078 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:36.078 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:36.078 -07 000000431 INF: FPGA: Recv ZSGSRD 36675
17-03-17 22:25:36.088 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:36.088 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:36.088 -07 000000476 INF: FPGA: Recv ZSGSRD 36686
17-03-17 22:25:36.098 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:36.098 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:36.098 -07 000000512 INF: FPGA: Recv ZSGSRD 36688
17-03-17 22:25:36.108 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:36.108 -07 000000626 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:25:36.108 -07 000000431 INF: FPGA: Recv ZPIEZORD 33021
17-03-17 22:25:36.118 -07 000000626 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:36.118 -07 000000626 INF: Z Motor: Piezo is near 50.5 V (nominally 0 to 100 V), expect near 58.7 V, since DAC is at 5.866 V. Piezo Error = -8.1 V.
17-03-17 22:25:36.118 -07 000000626 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.0 um, Read 10 ADC samples: Avg = 36685 (-175.1 uncal um), Error = 0.9 uncal um, Median = 36686 (-175.1 uncal um), StdDev = 6 (0.0 uncal um), Range = 22 (0.1 uncal um), Min = 36675 (-175.0 uncal um), Max = 36697 (-175.2 uncal um), Pos Noise = 12 (0.1 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-17 22:25:36.118 -07 000000626 INF: Z Motor: ADC noise = 12, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36685, posNoise = 12, negNoise = 10
17-03-17 22:25:36.118 -07 000000626 INF: Z Motor: After move to -0.175990, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:25:36.118 -07 000000626 INF: Z Motor: Settle wait time = 1443 ms, measure time = 102 ms (allowed 150 ms), total time = 1545 ms
17-03-17 22:25:36.118 -07 000000626 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 22:25:36.168 -07 000000626 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1597 ms
17-03-17 22:25:36.168 -07 000000626 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:25:36.168 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:25:36.168 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:25:36.168 -07 000000431 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:25:36.168 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:25:36.168 -07 000000476 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:25:36.168 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:25:36.168 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:25:36.168 -07 000000476 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:25:36.178 -07 000000476 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:25:36.178 -07 000000476 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:25:36.178 -07 000000476 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 22:25:36.178 -07 000000476 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 22:25:36.188 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:25:36.228 -07 000000476 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:25:36.428 -07 000000512 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:25:36.428 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:25:36.428 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:25:36.548 -07 000000476 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:25:36.548 -07 000000476 INF: FPGA: Recv CAMSNAP
17-03-17 22:25:36.548 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1460015264, 0x0, 559484976) start.
17-03-17 22:25:36.548 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 355 ms to get response, and 363 ms overall
17-03-17 22:25:36.678 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1460015264, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 22:25:36.678 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:25:36.678 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:25:36.678 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 245 ms.
17-03-17 22:25:36.748 -07 000000482 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:25:36.748 -07 000000431 INF: Autofocus start
17-03-17 22:25:36.748 -07 000000431 INF: MeasureProfile start
17-03-17 22:25:36.748 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:25:36.758 -07 000000482 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:25:36.758 -07 000000482 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:25:36.758 -07 000000431 INF: MeasureProfile done
17-03-17 22:25:36.758 -07 000000431 INF: X=16  Z correction [um]=0.01042744
17-03-17 22:25:36.758 -07 000000431 INF: Autofocus finished
17-03-17 22:25:36.958 -07 000000626 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:25:36.958 -07 000000482 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:25:36.958 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.37109375, Z-position -0.175995574431636. ----------
17-03-17 22:25:36.958 -07 000000610 INF: Cycle	63	Tile	10	Exposure Settings		A	452	G	217	T	217	C	452
17-03-17 22:25:36.968 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36959, sync = True, waitForSettling = True)
17-03-17 22:25:36.968 -07 000000610 INF: Z Motor: Moving to -0.169187 mm, started at -0.175996 mm, distance = 6.81 um
17-03-17 22:25:36.968 -07 000000610 INF: FPGA: Xmit ZDACW 36959\n [Z Motor]
17-03-17 22:25:36.968 -07 000000382 INF: FPGA: Recv ZDACW
17-03-17 22:25:36.968 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:25:36.968 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 62. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=994, R2=1021, Total=2015. Warn if over 250 bubbles per interval.
17-03-17 22:25:36.978 -07 000000610 INF: FPGA: 'ZDACW 36959' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:25:36.978 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:25:36.978 -07 000000482 INF: FPGA: Recv ZDACR 36959
17-03-17 22:25:36.988 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:36.988 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:25:37.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:37.138 -07 000000382 INF: FPGA: Recv ZSGSRD 35627
17-03-17 22:25:37.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:25:37.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:37.148 -07 000000512 INF: FPGA: Recv ZSGSRD 35628
17-03-17 22:25:37.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:37.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:37.158 -07 000000626 INF: FPGA: Recv ZSGSRD 35625
17-03-17 22:25:37.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:37.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:37.168 -07 000000424 INF: FPGA: Recv ZSGSRD 35624
17-03-17 22:25:37.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:37.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:37.178 -07 000000626 INF: FPGA: Recv ZSGSRD 35623
17-03-17 22:25:37.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:37.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:37.188 -07 000000512 INF: FPGA: Recv ZSGSRD 35627
17-03-17 22:25:37.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:37.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:37.198 -07 000000438 INF: FPGA: Recv ZSGSRD 35631
17-03-17 22:25:37.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:37.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:37.208 -07 000000512 INF: FPGA: Recv ZSGSRD 35625
17-03-17 22:25:37.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:37.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:37.218 -07 000000438 INF: FPGA: Recv ZSGSRD 35625
17-03-17 22:25:37.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:37.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:37.228 -07 000000424 INF: FPGA: Recv ZSGSRD 35628
17-03-17 22:25:37.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:37.238 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:25:37.238 -07 000000512 INF: FPGA: Recv ZPIEZORD 31615
17-03-17 22:25:37.248 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 1 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:25:37.248 -07 000000610 INF: Z Motor: Piezo is near 47.5 V (nominally 0 to 100 V), expect near 56.4 V, since DAC is at 5.640 V. Piezo Error = -8.9 V.
17-03-17 22:25:37.248 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.2 um, Read 10 ADC samples: Avg = 35626 (-168.3 uncal um), Error = 0.9 uncal um, Median = 35626 (-168.3 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35623 (-168.3 uncal um), Max = 35631 (-168.4 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 22:25:37.248 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35626, posNoise = 5, negNoise = 3
17-03-17 22:25:37.248 -07 000000610 INF: Z Motor: After move to -0.169187, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:25:37.248 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 22:25:37.248 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:25:37.248 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:25:37.248 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:25:37.248 -07 000000476 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:25:37.248 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:25:37.248 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:25:37.248 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:25:37.248 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:25:37.248 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:25:37.248 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:25:37.248 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:25:37.248 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:25:37.258 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:25:37.258 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:25:37.258 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:25:37.258 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:25:37.268 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 22:25:37.268 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 22:25:37.268 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 22:25:37.268 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 22:25:37.278 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 452 452 217 217 37136 150\n [Camera]
17-03-17 22:25:37.468 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:25:37.928 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 644
17-03-17 22:25:37.928 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 644
17-03-17 22:25:37.928 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:25:37.928 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 644
17-03-17 22:25:37.928 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 644
17-03-17 22:25:37.928 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:25:37.928 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:25:37.928 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 22:25:37.938 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:25:37.938 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 22:25:38.118 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37136 837
17-03-17 22:25:38.268 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning grn on 987
17-03-17 22:25:38.308 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 372 ms.
17-03-17 22:25:38.308 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-17 22:25:38.308 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:25:38.308 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 370 ms.
17-03-17 22:25:38.308 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 370 ms.
17-03-17 22:25:38.308 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:25:38.308 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 22:25:38.308 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 22:25:38.308 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 22:25:38.318 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 22:25:38.488 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1204
17-03-17 22:25:38.488 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1204
17-03-17 22:25:38.488 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:25:38.488 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1204
17-03-17 22:25:38.488 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1204
17-03-17 22:25:38.488 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:25:38.488 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:25:38.488 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-17 22:25:38.608 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:25:38.608 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-17 22:25:38.678 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP 1397
17-03-17 22:25:38.678 -07 000000424 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:25:38.678 -07 000000610 INF: FPGA: 'CAMDBLSNAP 452 452 217 217 37136 150' command took 2 ms to send, 1394 ms to get response, and 1404 ms overall
17-03-17 22:25:38.678 -07 000000610 INF: Skipping AutoFocus in Tile 11: adopting Best-Z from the cache: -0.169480
17-03-17 22:25:38.678 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.16948 mm
17-03-17 22:25:38.678 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:25:38.678 -07 000000438 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-17 22:25:38.678 -07 000000438 INF: Y Motor: Moving to 68.2126 mm, started at 67.3711 mm, delta = 0.8415 mm
17-03-17 22:25:38.678 -07 000000476 INF: Z Motor: Entering MoveAbsStepped (DAC = 37023, sync = True, waitForSettling = False)
17-03-17 22:25:38.678 -07 000000476 INF: Z Motor: Moving to -0.169480 mm, started at -0.169192 mm, distance = -0.29 um
17-03-17 22:25:38.678 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:25:38.688 -07 000000476 INF: FPGA: Xmit ZDACW 37023\n [Z Motor]
17-03-17 22:25:38.688 -07 000000627 INF: FPGA: Recv YRDPOS 137976
17-03-17 22:25:38.688 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 22:25:38.688 -07 000000438 INF: Y Motor: Encoder = 137976 = motor step 107793.8 = 67.3711 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:25:38.688 -07 000000438 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:25:38.688 -07 000000438 INF: Y Motor: Moving 1346 steps-24
17-03-17 22:25:38.688 -07 000000382 INF: FPGA: Recv ZDACW
17-03-17 22:25:38.698 -07 000000476 INF: FPGA: 'ZDACW 37023' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:25:38.698 -07 000000476 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:25:38.698 -07 000000627 INF: FPGA: Recv ZDACR 37023
17-03-17 22:25:38.708 -07 000000438 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:25:38.708 -07 000000476 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:38.708 -07 000000476 INF: Z Motor: MoveAbsStepped took 21 ms (did NOT wait for settling yet))
17-03-17 22:25:38.868 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 377 ms.
17-03-17 22:25:38.868 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-17 22:25:38.868 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:25:38.868 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:25:38.878 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 22:25:38.918 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 63, FrontChillerTemperature: 3.975845,
17-03-17 22:25:38.988 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 22:25:38.988 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 22:25:38.988 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:25:38.988 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:25:38.988 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 503 ms.
17-03-17 22:25:39.078 -07 000000626 INF: FPGA: Recv YMVTILE
17-03-17 22:25:39.078 -07 000000438 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-17 22:25:39.118 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:25:39.128 -07 000000501 INF: FPGA: Recv YRDPOS 139681
17-03-17 22:25:39.128 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 22:25:39.128 -07 000000438 INF: Y Motor: Encoder = 139681 = motor step 109125.8 = 68.2036 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:25:39.128 -07 000000438 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-17 22:25:39.128 -07 000000438 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 396 ms, distance = 0.842 mm, average velocity = 2.125 mm/sec
17-03-17 22:25:40.078 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:25:40.078 -07 000000424 INF: FPGA: Recv YRDPOS 139682
17-03-17 22:25:40.088 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:40.088 -07 000000438 INF: Y Motor: Encoder = 139682 = motor step 109126.6 = 68.2041 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:25:40.108 -07 000000438 INF: Y Motor: After move to 68.212608, error = -0.008507, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:25:40.108 -07 000000438 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 22:25:40.108 -07 000000438 INF: Y Motor: Moved to 68.2041 after 1425 ms (table move)
17-03-17 22:25:40.108 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.169480 mm (DAC = 37023)
17-03-17 22:25:40.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:40.118 -07 000000438 INF: FPGA: Recv ZSGSRD 35672
17-03-17 22:25:40.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 5 ms overall
17-03-17 22:25:40.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:40.118 -07 000000438 INF: FPGA: Recv ZSGSRD 35666
17-03-17 22:25:40.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:25:40.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:40.128 -07 000000382 INF: FPGA: Recv ZSGSRD 35673
17-03-17 22:25:40.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:40.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:40.138 -07 000000438 INF: FPGA: Recv ZSGSRD 35679
17-03-17 22:25:40.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:40.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:40.148 -07 000000382 INF: FPGA: Recv ZSGSRD 35676
17-03-17 22:25:40.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:40.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:40.168 -07 000000424 INF: FPGA: Recv ZSGSRD 35669
17-03-17 22:25:40.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:25:40.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:40.178 -07 000000424 INF: FPGA: Recv ZSGSRD 35670
17-03-17 22:25:40.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:40.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:40.188 -07 000000438 INF: FPGA: Recv ZSGSRD 35670
17-03-17 22:25:40.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:40.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:40.198 -07 000000424 INF: FPGA: Recv ZSGSRD 35676
17-03-17 22:25:40.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:40.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:40.208 -07 000000424 INF: FPGA: Recv ZSGSRD 35676
17-03-17 22:25:40.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:40.218 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:25:40.218 -07 000000382 INF: FPGA: Recv ZPIEZORD 31697
17-03-17 22:25:40.228 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:40.228 -07 000000610 INF: Z Motor: Piezo is near 47.7 V (nominally 0 to 100 V), expect near 56.5 V, since DAC is at 5.649 V. Piezo Error = -8.8 V.
17-03-17 22:25:40.228 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.5 um, Read 10 ADC samples: Avg = 35673 (-168.6 uncal um), Error = 0.9 uncal um, Median = 35672 (-168.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35666 (-168.6 uncal um), Max = 35679 (-168.7 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 22:25:40.228 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35673, posNoise = 6, negNoise = 7
17-03-17 22:25:40.228 -07 000000610 INF: Z Motor: After move to -0.169480, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:25:40.228 -07 000000610 INF: Z Motor: Settle wait time = 1428 ms, measure time = 113 ms (allowed 150 ms), total time = 1541 ms
17-03-17 22:25:40.228 -07 000000610 INF: Z Motor: Waiting extra 37 ms after reading position to reach expected total of 150 ms
17-03-17 22:25:40.268 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1583 ms
17-03-17 22:25:40.268 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:25:40.268 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.2041015625, Z-position -0.169494271744174. ----------
17-03-17 22:25:40.268 -07 000000610 INF: Cycle	63	Tile	11	Exposure Settings		A	452	G	217	T	217	C	452
17-03-17 22:25:40.268 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36846, sync = True, waitForSettling = True)
17-03-17 22:25:40.268 -07 000000610 INF: Z Motor: Moving to -0.168670 mm, started at -0.169494 mm, distance = 0.82 um
17-03-17 22:25:40.268 -07 000000610 INF: FPGA: Xmit ZDACW 36846\n [Z Motor]
17-03-17 22:25:40.268 -07 000000438 INF: FPGA: Recv ZDACW
17-03-17 22:25:40.278 -07 000000610 INF: FPGA: 'ZDACW 36846' command took 1 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 22:25:40.278 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:25:40.278 -07 000000438 INF: FPGA: Recv ZDACR 36846
17-03-17 22:25:40.288 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:40.288 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:25:40.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:40.438 -07 000000424 INF: FPGA: Recv ZSGSRD 35544
17-03-17 22:25:40.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:25:40.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:40.448 -07 000000438 INF: FPGA: Recv ZSGSRD 35554
17-03-17 22:25:40.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:40.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:40.458 -07 000000424 INF: FPGA: Recv ZSGSRD 35548
17-03-17 22:25:40.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:40.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:40.478 -07 000000424 INF: FPGA: Recv ZSGSRD 35547
17-03-17 22:25:40.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:25:40.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:40.508 -07 000000482 INF: FPGA: Recv ZSGSRD 35547
17-03-17 22:25:40.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:25:40.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:40.538 -07 000000482 INF: FPGA: Recv ZSGSRD 35550
17-03-17 22:25:40.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-17 22:25:40.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:40.548 -07 000000438 INF: FPGA: Recv ZSGSRD 35540
17-03-17 22:25:40.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:40.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:40.558 -07 000000482 INF: FPGA: Recv ZSGSRD 35545
17-03-17 22:25:40.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:40.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:40.568 -07 000000438 INF: FPGA: Recv ZSGSRD 35547
17-03-17 22:25:40.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:40.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:40.578 -07 000000482 INF: FPGA: Recv ZSGSRD 35548
17-03-17 22:25:40.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:40.588 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:25:40.588 -07 000000482 INF: FPGA: Recv ZPIEZORD 31504
17-03-17 22:25:40.598 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:40.598 -07 000000610 INF: Z Motor: Piezo is near 47.3 V (nominally 0 to 100 V), expect near 56.2 V, since DAC is at 5.622 V. Piezo Error = -8.9 V.
17-03-17 22:25:40.598 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.7 um, Read 10 ADC samples: Avg = 35547 (-167.8 uncal um), Error = 0.9 uncal um, Median = 35547 (-167.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 35540 (-167.8 uncal um), Max = 35554 (-167.9 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 22:25:40.598 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35547, posNoise = 7, negNoise = 7
17-03-17 22:25:40.598 -07 000000610 INF: Z Motor: After move to -0.168670, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:25:40.598 -07 000000610 INF: Z Motor: MoveAbsStepped took 326 ms)
17-03-17 22:25:40.598 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:25:40.598 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:25:40.598 -07 000000482 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:25:40.598 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:25:40.598 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:25:40.598 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:25:40.598 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:25:40.598 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:25:40.598 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 22:25:40.598 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:25:40.598 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:25:40.598 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:25:40.608 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:25:40.608 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:25:40.608 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:25:40.608 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:25:40.618 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-17 22:25:40.618 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 22:25:40.618 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 22:25:40.618 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 22:25:40.618 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 452 452 217 217 37023 150\n [Camera]
17-03-17 22:25:40.818 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:25:41.278 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 644
17-03-17 22:25:41.278 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 644
17-03-17 22:25:41.278 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:25:41.278 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 644
17-03-17 22:25:41.278 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 644
17-03-17 22:25:41.278 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:25:41.278 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:25:41.278 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 22:25:41.288 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:25:41.288 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 22:25:41.468 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37023 837
17-03-17 22:25:41.618 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning grn on 987
17-03-17 22:25:41.648 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 372 ms.
17-03-17 22:25:41.648 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 372 ms.
17-03-17 22:25:41.648 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:25:41.658 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 371 ms.
17-03-17 22:25:41.658 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-17 22:25:41.658 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:25:41.658 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:25:41.658 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 22:25:41.658 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:25:41.668 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 22:25:41.838 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1204
17-03-17 22:25:41.838 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1204
17-03-17 22:25:41.838 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:25:41.838 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:25:41.838 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start.
17-03-17 22:25:41.838 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1204
17-03-17 22:25:41.838 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1204
17-03-17 22:25:41.838 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:25:41.838 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:25:41.838 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) start.
17-03-17 22:25:41.968 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:25:41.968 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 62. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=994, R2=1021, Total=2015. Warn if over 250 bubbles per interval.
17-03-17 22:25:42.028 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP 1396
17-03-17 22:25:42.028 -07 000000512 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:25:42.028 -07 000000610 INF: FPGA: 'CAMDBLSNAP 452 452 217 217 37023 150' command took 2 ms to send, 1391 ms to get response, and 1403 ms overall
17-03-17 22:25:42.028 -07 000000610 INF: Skipping AutoFocus in Tile 12: adopting Best-Z from the cache: -0.169374
17-03-17 22:25:42.028 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.16937 mm
17-03-17 22:25:42.028 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:25:42.028 -07 000000576 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-17 22:25:42.028 -07 000000576 INF: Y Motor: Moving to 69.0426 mm, started at 68.2041 mm, delta = 0.8385 mm
17-03-17 22:25:42.028 -07 000000459 INF: Z Motor: Entering MoveAbsStepped (DAC = 37000, sync = True, waitForSettling = False)
17-03-17 22:25:42.028 -07 000000459 INF: Z Motor: Moving to -0.169375 mm, started at -0.168685 mm, distance = -0.69 um
17-03-17 22:25:42.028 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:25:42.038 -07 000000512 INF: FPGA: Recv YRDPOS 139682
17-03-17 22:25:42.038 -07 000000459 INF: FPGA: Xmit ZDACW 37000\n [Z Motor]
17-03-17 22:25:42.038 -07 000000576 INF: FPGA: 'YRDPOS' command took 1 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:25:42.038 -07 000000576 INF: Y Motor: Encoder = 139682 = motor step 109126.6 = 68.2041 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:25:42.038 -07 000000576 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:25:42.038 -07 000000576 INF: Y Motor: Moving 1342 steps-18
17-03-17 22:25:42.038 -07 000000475 INF: FPGA: Recv ZDACW
17-03-17 22:25:42.048 -07 000000459 INF: FPGA: 'ZDACW 37000' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 22:25:42.048 -07 000000576 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:25:42.058 -07 000000459 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:25:42.058 -07 000000424 INF: FPGA: Recv ZDACR 37000
17-03-17 22:25:42.068 -07 000000459 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:25:42.068 -07 000000459 INF: Z Motor: MoveAbsStepped took 33 ms (did NOT wait for settling yet))
17-03-17 22:25:42.218 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 387 ms.
17-03-17 22:25:42.218 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 22:25:42.218 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:25:42.228 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:25:42.228 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 22:25:42.228 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) end. Duration was 393 ms.
17-03-17 22:25:42.228 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 22:25:42.228 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:25:42.238 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:25:42.248 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-17 22:25:42.418 -07 000000626 INF: FPGA: Recv YMVTILE
17-03-17 22:25:42.418 -07 000000576 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-17 22:25:42.458 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:25:42.468 -07 000000424 INF: FPGA: Recv YRDPOS 141365
17-03-17 22:25:42.468 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 22:25:42.468 -07 000000576 INF: Y Motor: Encoder = 141365 = motor step 110441.4 = 69.0259 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:25:42.468 -07 000000576 INF: Y Motor: Position error before settling (table move) = -34 encoder counts (-0.017 mm)
17-03-17 22:25:42.468 -07 000000576 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.839 mm, average velocity = 2.167 mm/sec
17-03-17 22:25:43.418 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:25:43.418 -07 000000475 INF: FPGA: Recv YRDPOS 141365
17-03-17 22:25:43.428 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:25:43.428 -07 000000576 INF: Y Motor: Encoder = 141365 = motor step 110441.4 = 69.0259 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:25:43.448 -07 000000576 INF: Y Motor: After move to 69.042610, error = -0.016731, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:25:43.448 -07 000000576 INF: Y Motor: Position error after settling (table move) = -34 encoder counts (-0.017 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:25:43.448 -07 000000576 INF: Y Motor: Moved to 69.0259 after 1417 ms (table move)
17-03-17 22:25:43.448 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.169375 mm (DAC = 37000)
17-03-17 22:25:43.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:43.458 -07 000000459 INF: FPGA: Recv ZSGSRD 35655
17-03-17 22:25:43.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 22:25:43.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:43.458 -07 000000482 INF: FPGA: Recv ZSGSRD 35653
17-03-17 22:25:43.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:43.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:43.468 -07 000000626 INF: FPGA: Recv ZSGSRD 35658
17-03-17 22:25:43.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:43.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:43.478 -07 000000424 INF: FPGA: Recv ZSGSRD 35657
17-03-17 22:25:43.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:43.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:43.488 -07 000000576 INF: FPGA: Recv ZSGSRD 35651
17-03-17 22:25:43.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:43.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:43.498 -07 000000512 INF: FPGA: Recv ZSGSRD 35657
17-03-17 22:25:43.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:43.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:43.508 -07 000000482 INF: FPGA: Recv ZSGSRD 35649
17-03-17 22:25:43.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:43.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:43.518 -07 000000626 INF: FPGA: Recv ZSGSRD 35653
17-03-17 22:25:43.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:43.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:43.528 -07 000000576 INF: FPGA: Recv ZSGSRD 35658
17-03-17 22:25:43.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:43.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:43.538 -07 000000482 INF: FPGA: Recv ZSGSRD 35659
17-03-17 22:25:43.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:43.548 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:25:43.548 -07 000000438 INF: FPGA: Recv ZPIEZORD 31657
17-03-17 22:25:43.558 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:43.558 -07 000000610 INF: Z Motor: Piezo is near 47.6 V (nominally 0 to 100 V), expect near 56.5 V, since DAC is at 5.646 V. Piezo Error = -8.8 V.
17-03-17 22:25:43.558 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.4 um, Read 10 ADC samples: Avg = 35655 (-168.5 uncal um), Error = 0.9 uncal um, Median = 35656 (-168.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35649 (-168.5 uncal um), Max = 35659 (-168.5 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 22:25:43.558 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35655, posNoise = 4, negNoise = 6
17-03-17 22:25:43.558 -07 000000610 INF: Z Motor: After move to -0.169375, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:25:43.558 -07 000000610 INF: Z Motor: Settle wait time = 1420 ms, measure time = 103 ms (allowed 150 ms), total time = 1523 ms
17-03-17 22:25:43.558 -07 000000610 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 22:25:43.608 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1575 ms
17-03-17 22:25:43.608 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:25:43.608 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02587890625, Z-position -0.169378635925622. ----------
17-03-17 22:25:43.608 -07 000000610 INF: Cycle	63	Tile	12	Exposure Settings		A	452	G	217	T	217	C	452
17-03-17 22:25:43.608 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36823, sync = True, waitForSettling = True)
17-03-17 22:25:43.608 -07 000000610 INF: Z Motor: Moving to -0.168565 mm, started at -0.169379 mm, distance = 0.81 um
17-03-17 22:25:43.608 -07 000000610 INF: FPGA: Xmit ZDACW 36823\n [Z Motor]
17-03-17 22:25:43.618 -07 000000382 INF: FPGA: Recv ZDACW
17-03-17 22:25:43.618 -07 000000610 INF: FPGA: 'ZDACW 36823' command took 0 ms to send, 1 ms to get response, and 6 ms overall
17-03-17 22:25:43.618 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:25:43.618 -07 000000626 INF: FPGA: Recv ZDACR 36823
17-03-17 22:25:43.628 -07 000000610 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:25:43.628 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:25:43.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:43.778 -07 000000382 INF: FPGA: Recv ZSGSRD 35532
17-03-17 22:25:43.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:25:43.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:43.788 -07 000000382 INF: FPGA: Recv ZSGSRD 35533
17-03-17 22:25:43.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:43.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:43.798 -07 000000626 INF: FPGA: Recv ZSGSRD 35528
17-03-17 22:25:43.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:43.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:43.808 -07 000000382 INF: FPGA: Recv ZSGSRD 35532
17-03-17 22:25:43.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:43.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:43.818 -07 000000626 INF: FPGA: Recv ZSGSRD 35530
17-03-17 22:25:43.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:43.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:43.828 -07 000000626 INF: FPGA: Recv ZSGSRD 35529
17-03-17 22:25:43.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:43.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:43.838 -07 000000382 INF: FPGA: Recv ZSGSRD 35535
17-03-17 22:25:43.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:43.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:43.848 -07 000000382 INF: FPGA: Recv ZSGSRD 35529
17-03-17 22:25:43.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:43.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:43.858 -07 000000382 INF: FPGA: Recv ZSGSRD 35532
17-03-17 22:25:43.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:43.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:43.868 -07 000000626 INF: FPGA: Recv ZSGSRD 35531
17-03-17 22:25:43.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:43.878 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:25:43.878 -07 000000382 INF: FPGA: Recv ZPIEZORD 31496
17-03-17 22:25:43.888 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:43.888 -07 000000610 INF: Z Motor: Piezo is near 47.3 V (nominally 0 to 100 V), expect near 56.2 V, since DAC is at 5.619 V. Piezo Error = -8.9 V.
17-03-17 22:25:43.888 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.6 um, Read 10 ADC samples: Avg = 35531 (-167.7 uncal um), Error = 0.9 uncal um, Median = 35532 (-167.7 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 35528 (-167.7 uncal um), Max = 35535 (-167.7 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 22:25:43.888 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35531, posNoise = 4, negNoise = 3
17-03-17 22:25:43.888 -07 000000610 INF: Z Motor: After move to -0.168565, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:25:43.888 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 22:25:43.888 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:25:43.888 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:25:43.888 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:25:43.888 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:25:43.888 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:25:43.888 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:25:43.888 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:25:43.888 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:25:43.888 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:25:43.888 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:25:43.888 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:25:43.888 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:25:43.888 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 22:25:43.898 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:25:43.898 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 5 ms.
17-03-17 22:25:43.898 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:25:43.908 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 22:25:43.908 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 22:25:43.908 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-17 22:25:43.908 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 22:25:43.918 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 452 452 217 217 37000 150\n [Camera]
17-03-17 22:25:44.118 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning red on 196
17-03-17 22:25:44.278 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 63, FrontChillerTemperature: 3.978563,
17-03-17 22:25:44.568 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 644
17-03-17 22:25:44.568 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 644
17-03-17 22:25:44.568 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:25:44.568 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:25:44.568 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 22:25:44.568 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 644
17-03-17 22:25:44.568 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 644
17-03-17 22:25:44.568 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:25:44.568 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:25:44.568 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 22:25:44.758 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37000 837
17-03-17 22:25:44.908 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning grn on 987
17-03-17 22:25:44.948 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 22:25:44.948 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-17 22:25:44.948 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:25:44.948 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 22:25:44.948 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 22:25:44.948 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:25:44.948 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:25:44.948 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 22:25:44.948 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:25:44.958 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 22:25:45.128 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1204
17-03-17 22:25:45.128 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1204
17-03-17 22:25:45.128 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:25:45.128 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:25:45.128 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-17 22:25:45.128 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1204
17-03-17 22:25:45.128 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1204
17-03-17 22:25:45.128 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:25:45.128 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:25:45.128 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 22:25:45.318 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP 1396
17-03-17 22:25:45.318 -07 000000627 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:25:45.318 -07 000000610 INF: FPGA: 'CAMDBLSNAP 452 452 217 217 37000 150' command took 2 ms to send, 1394 ms to get response, and 1403 ms overall
17-03-17 22:25:45.318 -07 000000610 INF: Skipping AutoFocus in Tile 13: adopting Best-Z from the cache: -0.168841
17-03-17 22:25:45.318 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.16884 mm
17-03-17 22:25:45.318 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:25:45.318 -07 000000012 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-17 22:25:45.318 -07 000000012 INF: Y Motor: Moving to 69.8726 mm, started at 69.0259 mm, delta = 0.8467 mm
17-03-17 22:25:45.318 -07 000000382 INF: Z Motor: Entering MoveAbsStepped (DAC = 36883, sync = True, waitForSettling = False)
17-03-17 22:25:45.318 -07 000000382 INF: Z Motor: Moving to -0.168840 mm, started at -0.168582 mm, distance = -0.26 um
17-03-17 22:25:45.318 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:25:45.328 -07 000000382 INF: FPGA: Xmit ZDACW 36883\n [Z Motor]
17-03-17 22:25:45.328 -07 000000475 INF: FPGA: Recv YRDPOS 141365
17-03-17 22:25:45.328 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 22:25:45.328 -07 000000012 INF: Y Motor: Encoder = 141365 = motor step 110441.4 = 69.0259 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:25:45.328 -07 000000012 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:25:45.328 -07 000000012 INF: Y Motor: Moving 1355 steps-34
17-03-17 22:25:45.328 -07 000000576 INF: FPGA: Recv ZDACW
17-03-17 22:25:45.338 -07 000000382 INF: FPGA: 'ZDACW 36883' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:25:45.338 -07 000000012 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:25:45.348 -07 000000382 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:25:45.348 -07 000000576 INF: FPGA: Recv ZDACR 36883
17-03-17 22:25:45.358 -07 000000382 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:25:45.358 -07 000000382 INF: Z Motor: MoveAbsStepped took 31 ms (did NOT wait for settling yet))
17-03-17 22:25:45.508 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 22:25:45.508 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 22:25:45.508 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:25:45.508 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 22:25:45.508 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 22:25:45.508 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:25:45.508 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:25:45.508 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 22:25:45.518 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 22:25:45.518 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 22:25:45.718 -07 000000547 INF: FPGA: Recv YMVTILE
17-03-17 22:25:45.718 -07 000000012 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 372 ms to get response, and 389 ms overall
17-03-17 22:25:45.758 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:25:45.758 -07 000000501 INF: FPGA: Recv YRDPOS 143077
17-03-17 22:25:45.768 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:25:45.768 -07 000000012 INF: Y Motor: Encoder = 143077 = motor step 111778.9 = 69.8618 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:25:45.768 -07 000000012 INF: Y Motor: Position error before settling (table move) = -22 encoder counts (-0.011 mm)
17-03-17 22:25:45.768 -07 000000012 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 390 ms, distance = 0.847 mm, average velocity = 2.171 mm/sec
17-03-17 22:25:46.718 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:25:46.718 -07 000000431 INF: FPGA: Recv YRDPOS 143077
17-03-17 22:25:46.728 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:25:46.728 -07 000000012 INF: Y Motor: Encoder = 143077 = motor step 111778.9 = 69.8618 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:25:46.748 -07 000000012 INF: Y Motor: After move to 69.872612, error = -0.010796, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:25:46.748 -07 000000012 INF: Y Motor: Position error after settling (table move) = -22 encoder counts (-0.011 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:25:46.748 -07 000000012 INF: Y Motor: Moved to 69.8618 after 1426 ms (table move)
17-03-17 22:25:46.748 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.168840 mm (DAC = 36883)
17-03-17 22:25:46.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:46.758 -07 000000482 INF: FPGA: Recv ZSGSRD 35565
17-03-17 22:25:46.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 22:25:46.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:46.758 -07 000000482 INF: FPGA: Recv ZSGSRD 35578
17-03-17 22:25:46.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:46.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:46.768 -07 000000482 INF: FPGA: Recv ZSGSRD 35577
17-03-17 22:25:46.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:46.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:46.778 -07 000000482 INF: FPGA: Recv ZSGSRD 35571
17-03-17 22:25:46.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:46.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:46.788 -07 000000482 INF: FPGA: Recv ZSGSRD 35568
17-03-17 22:25:46.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:46.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:46.798 -07 000000482 INF: FPGA: Recv ZSGSRD 35571
17-03-17 22:25:46.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:46.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:46.808 -07 000000482 INF: FPGA: Recv ZSGSRD 35572
17-03-17 22:25:46.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:46.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:46.818 -07 000000626 INF: FPGA: Recv ZSGSRD 35570
17-03-17 22:25:46.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:46.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:46.828 -07 000000626 INF: FPGA: Recv ZSGSRD 35573
17-03-17 22:25:46.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:46.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:46.838 -07 000000626 INF: FPGA: Recv ZSGSRD 35577
17-03-17 22:25:46.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:46.848 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:25:46.848 -07 000000626 INF: FPGA: Recv ZPIEZORD 31560
17-03-17 22:25:46.858 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:46.858 -07 000000610 INF: Z Motor: Piezo is near 47.4 V (nominally 0 to 100 V), expect near 56.3 V, since DAC is at 5.628 V. Piezo Error = -8.9 V.
17-03-17 22:25:46.858 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.8 um, Read 10 ADC samples: Avg = 35572 (-168.0 uncal um), Error = 0.9 uncal um, Median = 35572 (-168.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35565 (-167.9 uncal um), Max = 35578 (-168.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 22:25:46.858 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35572, posNoise = 6, negNoise = 7
17-03-17 22:25:46.858 -07 000000610 INF: Z Motor: After move to -0.168840, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:25:46.858 -07 000000610 INF: Z Motor: Settle wait time = 1428 ms, measure time = 103 ms (allowed 150 ms), total time = 1531 ms
17-03-17 22:25:46.858 -07 000000610 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 22:25:46.908 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1583 ms
17-03-17 22:25:46.908 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:25:46.908 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86181640625, Z-position -0.168845426317856. ----------
17-03-17 22:25:46.908 -07 000000610 INF: Cycle	63	Tile	13	Exposure Settings		A	452	G	217	T	217	C	452
17-03-17 22:25:46.908 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36707, sync = True, waitForSettling = True)
17-03-17 22:25:46.908 -07 000000610 INF: Z Motor: Moving to -0.168034 mm, started at -0.168845 mm, distance = 0.81 um
17-03-17 22:25:46.908 -07 000000610 INF: FPGA: Xmit ZDACW 36707\n [Z Motor]
17-03-17 22:25:46.918 -07 000000626 INF: FPGA: Recv ZDACW
17-03-17 22:25:46.918 -07 000000610 INF: FPGA: 'ZDACW 36707' command took 0 ms to send, 2 ms to get response, and 5 ms overall
17-03-17 22:25:46.918 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:25:46.918 -07 000000626 INF: FPGA: Recv ZDACR 36707
17-03-17 22:25:46.928 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:25:46.928 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:25:46.968 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:25:46.968 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 62. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=994, R2=1021, Total=2015. Warn if over 250 bubbles per interval.
17-03-17 22:25:47.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:47.078 -07 000000626 INF: FPGA: Recv ZSGSRD 35446
17-03-17 22:25:47.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:25:47.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:47.088 -07 000000626 INF: FPGA: Recv ZSGSRD 35451
17-03-17 22:25:47.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:47.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:47.098 -07 000000626 INF: FPGA: Recv ZSGSRD 35450
17-03-17 22:25:47.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:47.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:47.108 -07 000000626 INF: FPGA: Recv ZSGSRD 35446
17-03-17 22:25:47.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:47.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:47.118 -07 000000626 INF: FPGA: Recv ZSGSRD 35445
17-03-17 22:25:47.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:47.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:47.128 -07 000000626 INF: FPGA: Recv ZSGSRD 35450
17-03-17 22:25:47.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:47.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:47.138 -07 000000626 INF: FPGA: Recv ZSGSRD 35450
17-03-17 22:25:47.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:47.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:47.148 -07 000000626 INF: FPGA: Recv ZSGSRD 35444
17-03-17 22:25:47.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:47.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:47.158 -07 000000626 INF: FPGA: Recv ZSGSRD 35449
17-03-17 22:25:47.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:47.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:47.168 -07 000000626 INF: FPGA: Recv ZSGSRD 35446
17-03-17 22:25:47.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:47.178 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:25:47.178 -07 000000626 INF: FPGA: Recv ZPIEZORD 31408
17-03-17 22:25:47.188 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:47.188 -07 000000610 INF: Z Motor: Piezo is near 47.1 V (nominally 0 to 100 V), expect near 56.0 V, since DAC is at 5.601 V. Piezo Error = -8.9 V.
17-03-17 22:25:47.188 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.0 um, Read 10 ADC samples: Avg = 35448 (-167.2 uncal um), Error = 0.9 uncal um, Median = 35448 (-167.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 35444 (-167.2 uncal um), Max = 35451 (-167.2 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 22:25:47.188 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35448, posNoise = 3, negNoise = 4
17-03-17 22:25:47.188 -07 000000610 INF: Z Motor: After move to -0.168034, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:25:47.188 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-17 22:25:47.188 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:25:47.188 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:25:47.188 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:25:47.188 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:25:47.188 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:25:47.188 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:25:47.198 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:25:47.198 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:25:47.198 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 22:25:47.198 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:25:47.208 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 22:25:47.208 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 22:25:47.218 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:25:47.218 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:25:47.218 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:25:47.218 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:25:47.218 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:25:47.218 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:25:47.228 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 12 ms.
17-03-17 22:25:47.228 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms.
17-03-17 22:25:47.238 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 452 452 217 217 36883 150\n [Camera]
17-03-17 22:25:47.438 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:25:47.888 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 644
17-03-17 22:25:47.888 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 644
17-03-17 22:25:47.888 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:25:47.888 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:25:47.888 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start.
17-03-17 22:25:47.888 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 644
17-03-17 22:25:47.888 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 644
17-03-17 22:25:47.888 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:25:47.888 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:25:47.888 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) start.
17-03-17 22:25:48.078 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36883 837
17-03-17 22:25:48.228 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning grn on 987
17-03-17 22:25:48.268 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 22:25:48.268 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-17 22:25:48.268 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:25:48.268 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 378 ms.
17-03-17 22:25:48.268 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-17 22:25:48.268 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:25:48.268 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:25:48.268 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:25:48.268 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 22:25:48.278 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 22:25:48.448 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1204
17-03-17 22:25:48.448 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1204
17-03-17 22:25:48.448 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:25:48.448 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:25:48.448 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-17 22:25:48.448 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1204
17-03-17 22:25:48.448 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1204
17-03-17 22:25:48.458 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:25:48.458 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:25:48.458 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-17 22:25:48.638 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP 1396
17-03-17 22:25:48.638 -07 000000431 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:25:48.638 -07 000000610 INF: FPGA: 'CAMDBLSNAP 452 452 217 217 36883 150' command took 2 ms to send, 1394 ms to get response, and 1403 ms overall
17-03-17 22:25:48.638 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 22:25:48.638 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.86181640625, Z-Position -0.168048824012277. ------
17-03-17 22:25:48.648 -07 000000424 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.17450 mm
17-03-17 22:25:48.648 -07 000000424 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:25:48.648 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:25:48.648 -07 000000438 INF: Z Motor: Entering MoveAbsStepped (DAC = 38120, sync = True, waitForSettling = False)
17-03-17 22:25:48.648 -07 000000438 INF: Z Motor: Moving to -0.174502 mm, started at -0.168049 mm, distance = -6.45 um
17-03-17 22:25:48.648 -07 000000431 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-17 22:25:48.648 -07 000000431 INF: Y Motor: Moving to 70.7026 mm, started at 69.8618 mm, delta = 0.8408 mm
17-03-17 22:25:48.648 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:25:48.658 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:25:48.658 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:48.658 -07 000000576 INF: FPGA: Recv YRDPOS 143077
17-03-17 22:25:48.668 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 22:25:48.668 -07 000000431 INF: Y Motor: Encoder = 143077 = motor step 111778.9 = 69.8618 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:25:48.668 -07 000000431 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:25:48.668 -07 000000431 INF: Y Motor: Moving 1345 steps-22
17-03-17 22:25:48.668 -07 000000512 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:25:48.678 -07 000000438 INF: FPGA: Xmit ZDACW 38120\n [Z Motor]
17-03-17 22:25:48.678 -07 000000576 INF: FPGA: Recv ZDACW
17-03-17 22:25:48.688 -07 000000431 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:25:48.688 -07 000000438 INF: FPGA: 'ZDACW 38120' command took 0 ms to send, 0 ms to get response, and 35 ms overall
17-03-17 22:25:48.698 -07 000000438 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:25:48.698 -07 000000576 INF: FPGA: Recv ZDACR 38120
17-03-17 22:25:48.708 -07 000000438 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:25:48.708 -07 000000438 INF: Z Motor: MoveAbsStepped took 55 ms (did NOT wait for settling yet))
17-03-17 22:25:48.828 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 22:25:48.828 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 22:25:48.828 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:25:48.828 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 22:25:48.828 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 22:25:48.828 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:25:48.838 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:25:48.838 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 22:25:48.838 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:25:48.848 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 22:25:48.868 -07 000000626 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:25:48.868 -07 000000512 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 211 ms overall
17-03-17 22:25:49.058 -07 000000012 INF: FPGA: Recv YMVTILE
17-03-17 22:25:49.058 -07 000000431 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 22:25:49.098 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:25:49.108 -07 000000476 INF: FPGA: Recv YRDPOS 144768
17-03-17 22:25:49.108 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 22:25:49.108 -07 000000431 INF: Y Motor: Encoder = 144768 = motor step 113100.0 = 70.6875 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:25:49.108 -07 000000431 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-17 22:25:49.108 -07 000000431 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.841 mm, average velocity = 2.118 mm/sec
17-03-17 22:25:49.638 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 63, FrontChillerTemperature: 4.005817,
17-03-17 22:25:50.058 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:25:50.058 -07 000000459 INF: FPGA: Recv YRDPOS 144768
17-03-17 22:25:50.068 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:50.068 -07 000000431 INF: Y Motor: Encoder = 144768 = motor step 113100.0 = 70.6875 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:25:50.088 -07 000000431 INF: Y Motor: After move to 70.702606, error = -0.015106, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:25:50.088 -07 000000431 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:25:50.088 -07 000000431 INF: Y Motor: Moved to 70.6875 after 1440 ms (table move)
17-03-17 22:25:50.088 -07 000000424 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174502 mm (DAC = 38120)
17-03-17 22:25:50.088 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:50.098 -07 000000476 INF: FPGA: Recv ZSGSRD 36458
17-03-17 22:25:50.098 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 22:25:50.098 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:50.098 -07 000000576 INF: FPGA: Recv ZSGSRD 36453
17-03-17 22:25:50.108 -07 000000424 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:25:50.108 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:50.728 -07 000000476 INF: FPGA: Recv ZSGSRD 36457
17-03-17 22:25:50.728 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 610 ms to get response, and 620 ms overall
17-03-17 22:25:50.728 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:50.728 -07 000000626 INF: FPGA: Recv ZSGSRD 36454
17-03-17 22:25:50.738 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:50.738 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:50.738 -07 000000512 INF: FPGA: Recv ZSGSRD 36457
17-03-17 22:25:50.748 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:50.748 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:50.748 -07 000000459 INF: FPGA: Recv ZSGSRD 36452
17-03-17 22:25:50.758 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:50.758 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:50.758 -07 000000626 INF: FPGA: Recv ZSGSRD 36454
17-03-17 22:25:50.768 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:50.768 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:50.768 -07 000000626 INF: FPGA: Recv ZSGSRD 36453
17-03-17 22:25:50.778 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:50.778 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:50.778 -07 000000576 INF: FPGA: Recv ZSGSRD 36452
17-03-17 22:25:50.788 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:50.788 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:50.788 -07 000000476 INF: FPGA: Recv ZSGSRD 36452
17-03-17 22:25:50.798 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:50.798 -07 000000424 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:25:50.798 -07 000000512 INF: FPGA: Recv ZPIEZORD 32720
17-03-17 22:25:50.808 -07 000000424 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:50.808 -07 000000424 INF: Z Motor: Piezo is near 49.9 V (nominally 0 to 100 V), expect near 58.2 V, since DAC is at 5.817 V. Piezo Error = -8.3 V.
17-03-17 22:25:50.808 -07 000000424 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.5 um, Read 10 ADC samples: Avg = 36454 (-173.6 uncal um), Error = 0.9 uncal um, Median = 36454 (-173.6 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 36452 (-173.6 uncal um), Max = 36458 (-173.7 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 2 (0.0 uncal um)
17-03-17 22:25:50.808 -07 000000424 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36454, posNoise = 4, negNoise = 2
17-03-17 22:25:50.808 -07 000000424 INF: Z Motor: After move to -0.174502, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:25:50.808 -07 000000424 INF: Z Motor: Settle wait time = 1443 ms, measure time = 712 ms (allowed 150 ms), total time = 2155 ms
17-03-17 22:25:50.808 -07 000000424 INF: Z Motor: Warning: Actual position measuring time = 712 ms, longer than max expected time of 150 ms
17-03-17 22:25:50.808 -07 000000424 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2158 ms
17-03-17 22:25:50.808 -07 000000424 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:25:50.808 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:25:50.808 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:25:50.808 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:25:50.808 -07 000000459 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:25:50.808 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:25:50.808 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:25:50.808 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 22:25:50.808 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:25:50.818 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:25:50.818 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:25:50.818 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 22:25:50.818 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-17 22:25:50.828 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:25:50.868 -07 000000475 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:25:51.068 -07 000000424 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:25:51.068 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:25:51.068 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:25:51.068 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 596199184, 0x0, 559484976) start.
17-03-17 22:25:51.108 -07 000000626 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:25:51.108 -07 000000512 INF: FPGA: Recv CAMSNAP
17-03-17 22:25:51.108 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 284 ms overall
17-03-17 22:25:51.188 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 596199184, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 22:25:51.188 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:25:51.188 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:25:51.188 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-17 22:25:51.208 -07 000000459 INF: Autofocus start
17-03-17 22:25:51.208 -07 000000459 INF: MeasureProfile start
17-03-17 22:25:51.218 -07 000000475 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:25:51.218 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:25:51.228 -07 000000475 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 22:25:51.228 -07 000000459 INF: MeasureProfile done
17-03-17 22:25:51.228 -07 000000459 INF: X=0  Z correction [um]=-0.0713522
17-03-17 22:25:51.228 -07 000000459 INF: Autofocus finished
17-03-17 22:25:51.248 -07 000000475 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:25:51.448 -07 000000424 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:25:51.448 -07 000000475 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 224 ms overall
17-03-17 22:25:51.448 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.6875, Z-position -0.174511581426889. ----------
17-03-17 22:25:51.458 -07 000000610 INF: Cycle	63	Tile	14	Exposure Settings		A	452	G	217	T	217	C	452
17-03-17 22:25:51.458 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36617, sync = True, waitForSettling = True)
17-03-17 22:25:51.458 -07 000000610 INF: Z Motor: Moving to -0.167622 mm, started at -0.174512 mm, distance = 6.89 um
17-03-17 22:25:51.458 -07 000000610 INF: FPGA: Xmit ZDACW 36617\n [Z Motor]
17-03-17 22:25:51.458 -07 000000476 INF: FPGA: Recv ZDACW
17-03-17 22:25:51.468 -07 000000610 INF: FPGA: 'ZDACW 36617' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:25:51.468 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:25:51.468 -07 000000576 INF: FPGA: Recv ZDACR 36617
17-03-17 22:25:51.478 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:51.478 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:25:51.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:51.628 -07 000000459 INF: FPGA: Recv ZSGSRD 35377
17-03-17 22:25:51.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:25:51.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:51.638 -07 000000424 INF: FPGA: Recv ZSGSRD 35385
17-03-17 22:25:51.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:51.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:51.648 -07 000000459 INF: FPGA: Recv ZSGSRD 35382
17-03-17 22:25:51.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:51.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:51.658 -07 000000476 INF: FPGA: Recv ZSGSRD 35383
17-03-17 22:25:51.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:51.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:51.668 -07 000000459 INF: FPGA: Recv ZSGSRD 35383
17-03-17 22:25:51.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:51.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:51.678 -07 000000476 INF: FPGA: Recv ZSGSRD 35382
17-03-17 22:25:51.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:51.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:51.688 -07 000000459 INF: FPGA: Recv ZSGSRD 35387
17-03-17 22:25:51.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:51.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:51.698 -07 000000476 INF: FPGA: Recv ZSGSRD 35385
17-03-17 22:25:51.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:51.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:51.708 -07 000000459 INF: FPGA: Recv ZSGSRD 35383
17-03-17 22:25:51.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:51.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:51.718 -07 000000475 INF: FPGA: Recv ZSGSRD 35384
17-03-17 22:25:51.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:51.728 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:25:51.728 -07 000000459 INF: FPGA: Recv ZPIEZORD 31269
17-03-17 22:25:51.738 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:51.738 -07 000000610 INF: Z Motor: Piezo is near 46.8 V (nominally 0 to 100 V), expect near 55.9 V, since DAC is at 5.587 V. Piezo Error = -9.1 V.
17-03-17 22:25:51.738 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.6 um, Read 10 ADC samples: Avg = 35383 (-166.8 uncal um), Error = 0.9 uncal um, Median = 35383 (-166.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35377 (-166.7 uncal um), Max = 35387 (-166.8 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 22:25:51.738 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35383, posNoise = 4, negNoise = 6
17-03-17 22:25:51.738 -07 000000610 INF: Z Motor: After move to -0.167622, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:25:51.738 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-17 22:25:51.738 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:25:51.738 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:25:51.738 -07 000000475 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:25:51.738 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:25:51.738 -07 000000459 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:25:51.738 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:25:51.738 -07 000000476 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:25:51.738 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:25:51.738 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:25:51.738 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:25:51.738 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:25:51.738 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:25:51.748 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:25:51.748 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:25:51.748 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:25:51.748 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:25:51.758 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 22:25:51.758 -07 000000459 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 22:25:51.758 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 22:25:51.758 -07 000000476 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 22:25:51.758 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 452 452 217 217 36794 150\n [Camera]
17-03-17 22:25:51.958 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:25:51.968 -07 000000476 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:25:51.968 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 62. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=994, R2=1021, Total=2015. Warn if over 250 bubbles per interval.
17-03-17 22:25:52.408 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 644
17-03-17 22:25:52.408 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 644
17-03-17 22:25:52.408 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:25:52.408 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:25:52.408 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) start.
17-03-17 22:25:52.408 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 644
17-03-17 22:25:52.408 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 644
17-03-17 22:25:52.408 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:25:52.408 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:25:52.408 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-17 22:25:52.598 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36794 837
17-03-17 22:25:52.748 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP turning grn on 987
17-03-17 22:25:52.808 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) end. Duration was 395 ms.
17-03-17 22:25:52.808 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 22:25:52.808 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:25:52.808 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 393 ms.
17-03-17 22:25:52.808 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 22:25:52.808 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:25:52.808 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:25:52.808 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 22:25:52.808 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:25:52.818 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-17 22:25:52.968 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1204
17-03-17 22:25:52.968 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1204
17-03-17 22:25:52.968 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:25:52.968 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:25:52.968 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) start.
17-03-17 22:25:52.968 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1204
17-03-17 22:25:52.968 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1204
17-03-17 22:25:52.968 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:25:52.968 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:25:52.968 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2620985504, 0x0, 418435064) start.
17-03-17 22:25:53.158 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP 1396
17-03-17 22:25:53.158 -07 000000424 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:25:53.158 -07 000000610 INF: FPGA: 'CAMDBLSNAP 452 452 217 217 36794 150' command took 2 ms to send, 1397 ms to get response, and 1403 ms overall
17-03-17 22:25:53.158 -07 000000610 INF: Skipping AutoFocus in Tile 15: adopting Best-Z from the cache: -0.167993
17-03-17 22:25:53.158 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.16799 mm
17-03-17 22:25:53.158 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:25:53.168 -07 000000476 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-17 22:25:53.168 -07 000000476 INF: Y Motor: Moving to 71.5326 mm, started at 70.6875 mm, delta = 0.8451 mm
17-03-17 22:25:53.168 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:25:53.168 -07 000000512 INF: Z Motor: Entering MoveAbsStepped (DAC = 36698, sync = True, waitForSettling = False)
17-03-17 22:25:53.168 -07 000000512 INF: Z Motor: Moving to -0.167993 mm, started at -0.167631 mm, distance = -0.36 um
17-03-17 22:25:53.168 -07 000000475 INF: FPGA: Recv YRDPOS 144768
17-03-17 22:25:53.178 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:25:53.178 -07 000000476 INF: Y Motor: Encoder = 144768 = motor step 113100.0 = 70.6875 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:25:53.178 -07 000000476 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:25:53.178 -07 000000476 INF: Y Motor: Moving 1352 steps-31
17-03-17 22:25:53.178 -07 000000476 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:25:53.188 -07 000000512 INF: FPGA: Xmit ZDACW 36698\n [Z Motor]
17-03-17 22:25:53.188 -07 000000424 INF: FPGA: Recv ZDACW
17-03-17 22:25:53.198 -07 000000512 INF: FPGA: 'ZDACW 36698' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-17 22:25:53.198 -07 000000512 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:25:53.198 -07 000000627 INF: FPGA: Recv ZDACR 36698
17-03-17 22:25:53.208 -07 000000512 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:53.208 -07 000000512 INF: Z Motor: MoveAbsStepped took 37 ms (did NOT wait for settling yet))
17-03-17 22:25:53.378 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) end. Duration was 403 ms.
17-03-17 22:25:53.378 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 22:25:53.378 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:25:53.378 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2620985504, 0x0, 418435064) end. Duration was 402 ms.
17-03-17 22:25:53.378 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-17 22:25:53.378 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:25:53.378 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:25:53.378 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 22:25:53.378 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-17 22:25:53.388 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-17 22:25:53.548 -07 000000512 INF: FPGA: Recv YMVTILE
17-03-17 22:25:53.548 -07 000000476 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 378 ms overall
17-03-17 22:25:53.588 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:25:53.598 -07 000000627 INF: FPGA: Recv YRDPOS 146468
17-03-17 22:25:53.598 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 22:25:53.598 -07 000000476 INF: Y Motor: Encoder = 146468 = motor step 114428.1 = 71.5176 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:25:53.598 -07 000000476 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-17 22:25:53.598 -07 000000476 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.845 mm, average velocity = 2.236 mm/sec
17-03-17 22:25:54.548 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:25:54.548 -07 000000512 INF: FPGA: Recv YRDPOS 146468
17-03-17 22:25:54.558 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:54.558 -07 000000476 INF: Y Motor: Encoder = 146468 = motor step 114428.1 = 71.5176 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:25:54.578 -07 000000476 INF: Y Motor: After move to 71.532608, error = -0.015030, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:25:54.578 -07 000000476 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:25:54.578 -07 000000476 INF: Y Motor: Moved to 71.5176 after 1414 ms (table move)
17-03-17 22:25:54.578 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.167993 mm (DAC = 36698)
17-03-17 22:25:54.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:54.588 -07 000000547 INF: FPGA: Recv ZSGSRD 35442
17-03-17 22:25:54.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-17 22:25:54.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:54.588 -07 000000576 INF: FPGA: Recv ZSGSRD 35443
17-03-17 22:25:54.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:25:54.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:54.598 -07 000000627 INF: FPGA: Recv ZSGSRD 35448
17-03-17 22:25:54.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:54.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:54.608 -07 000000547 INF: FPGA: Recv ZSGSRD 35442
17-03-17 22:25:54.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:54.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:54.618 -07 000000576 INF: FPGA: Recv ZSGSRD 35439
17-03-17 22:25:54.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:54.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:54.628 -07 000000459 INF: FPGA: Recv ZSGSRD 35442
17-03-17 22:25:54.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:54.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:54.638 -07 000000512 INF: FPGA: Recv ZSGSRD 35438
17-03-17 22:25:54.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:54.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:54.648 -07 000000576 INF: FPGA: Recv ZSGSRD 35440
17-03-17 22:25:54.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:54.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:54.658 -07 000000459 INF: FPGA: Recv ZSGSRD 35439
17-03-17 22:25:54.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:54.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:54.668 -07 000000627 INF: FPGA: Recv ZSGSRD 35445
17-03-17 22:25:54.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:54.688 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:25:54.688 -07 000000576 INF: FPGA: Recv ZPIEZORD 31408
17-03-17 22:25:54.698 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:25:54.698 -07 000000610 INF: Z Motor: Piezo is near 47.1 V (nominally 0 to 100 V), expect near 56.0 V, since DAC is at 5.600 V. Piezo Error = -8.9 V.
17-03-17 22:25:54.698 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.0 um, Read 10 ADC samples: Avg = 35442 (-167.1 uncal um), Error = 0.9 uncal um, Median = 35442 (-167.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35438 (-167.1 uncal um), Max = 35448 (-167.2 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 22:25:54.698 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35442, posNoise = 6, negNoise = 4
17-03-17 22:25:54.698 -07 000000610 INF: Z Motor: After move to -0.167993, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:25:54.698 -07 000000610 INF: Z Motor: Settle wait time = 1416 ms, measure time = 112 ms (allowed 150 ms), total time = 1528 ms
17-03-17 22:25:54.698 -07 000000610 INF: Z Motor: Waiting extra 38 ms after reading position to reach expected total of 150 ms
17-03-17 22:25:54.738 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1570 ms
17-03-17 22:25:54.738 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:25:54.738 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.517578125, Z-position -0.168010278739427. ----------
17-03-17 22:25:54.738 -07 000000610 INF: Cycle	63	Tile	15	Exposure Settings		A	452	G	217	T	217	C	452
17-03-17 22:25:54.748 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36521, sync = True, waitForSettling = True)
17-03-17 22:25:54.748 -07 000000610 INF: Z Motor: Moving to -0.167182 mm, started at -0.168010 mm, distance = 0.83 um
17-03-17 22:25:54.748 -07 000000610 INF: FPGA: Xmit ZDACW 36521\n [Z Motor]
17-03-17 22:25:54.748 -07 000000459 INF: FPGA: Recv ZDACW
17-03-17 22:25:54.758 -07 000000610 INF: FPGA: 'ZDACW 36521' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:25:54.758 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:25:54.758 -07 000000424 INF: FPGA: Recv ZDACR 36521
17-03-17 22:25:54.768 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:54.768 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:25:54.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:54.918 -07 000000576 INF: FPGA: Recv ZSGSRD 35314
17-03-17 22:25:54.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:54.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:54.928 -07 000000459 INF: FPGA: Recv ZSGSRD 35316
17-03-17 22:25:54.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:54.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:54.938 -07 000000576 INF: FPGA: Recv ZSGSRD 35308
17-03-17 22:25:54.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:54.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:54.948 -07 000000482 INF: FPGA: Recv ZSGSRD 35314
17-03-17 22:25:54.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:54.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:54.958 -07 000000476 INF: FPGA: Recv ZSGSRD 35314
17-03-17 22:25:54.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:54.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:54.968 -07 000000482 INF: FPGA: Recv ZSGSRD 35310
17-03-17 22:25:54.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:54.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:54.978 -07 000000476 INF: FPGA: Recv ZSGSRD 35316
17-03-17 22:25:54.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:54.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:54.998 -07 000000475 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 63, FrontChillerTemperature: 4.020806,
17-03-17 22:25:54.998 -07 000000475 INF: FPGA: Recv ZSGSRD 35320
17-03-17 22:25:55.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:25:55.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:55.018 -07 000000512 INF: FPGA: Recv ZSGSRD 35316
17-03-17 22:25:55.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:25:55.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:55.038 -07 000000475 INF: FPGA: Recv ZSGSRD 35311
17-03-17 22:25:55.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:25:55.068 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:25:55.068 -07 000000627 INF: FPGA: Recv ZPIEZORD 31244
17-03-17 22:25:55.078 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:25:55.078 -07 000000610 INF: Z Motor: Piezo is near 46.7 V (nominally 0 to 100 V), expect near 55.7 V, since DAC is at 5.573 V. Piezo Error = -9.0 V.
17-03-17 22:25:55.078 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.2 um, Read 10 ADC samples: Avg = 35314 (-166.3 uncal um), Error = 0.9 uncal um, Median = 35314 (-166.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35308 (-166.3 uncal um), Max = 35320 (-166.4 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 22:25:55.078 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35314, posNoise = 6, negNoise = 6
17-03-17 22:25:55.078 -07 000000610 INF: Z Motor: After move to -0.167182, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:25:55.078 -07 000000610 INF: Z Motor: MoveAbsStepped took 328 ms)
17-03-17 22:25:55.078 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:25:55.078 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:25:55.078 -07 000000475 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:25:55.078 -07 000000627 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:25:55.078 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:25:55.078 -07 000000459 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:25:55.078 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 3 ms.
17-03-17 22:25:55.078 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:25:55.078 -07 000000475 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:25:55.078 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:25:55.088 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:25:55.088 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:25:55.088 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:25:55.088 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:25:55.088 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:25:55.088 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:25:55.098 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 12 ms.
17-03-17 22:25:55.098 -07 000000627 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 22:25:55.098 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 12 ms.
17-03-17 22:25:55.098 -07 000000475 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 18 ms.
17-03-17 22:25:55.098 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 452 452 217 217 36698 150\n [Camera]
17-03-17 22:25:55.298 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:25:55.758 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 644
17-03-17 22:25:55.758 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 644
17-03-17 22:25:55.758 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:25:55.758 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:25:55.758 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) start.
17-03-17 22:25:55.758 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 644
17-03-17 22:25:55.758 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 644
17-03-17 22:25:55.758 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:25:55.758 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:25:55.758 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 2719780968, 0x0, 418435064) start.
17-03-17 22:25:56.148 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) end. Duration was 389 ms.
17-03-17 22:25:56.148 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 22:25:56.148 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:25:56.148 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 2719780968, 0x0, 418435064) end. Duration was 387 ms.
17-03-17 22:25:56.148 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 22:25:56.148 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:25:56.148 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:25:56.148 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 22:25:56.148 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:25:56.158 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 22:25:56.158 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36698 837
17-03-17 22:25:56.158 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP turning grn on 987
17-03-17 22:25:56.318 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1204
17-03-17 22:25:56.318 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1204
17-03-17 22:25:56.318 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:25:56.318 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:25:56.318 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 2755203232, 0x0, 391868352) start.
17-03-17 22:25:56.318 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1204
17-03-17 22:25:56.318 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1204
17-03-17 22:25:56.318 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:25:56.318 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:25:56.318 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 2818576432, 0x0, 418435064) start.
17-03-17 22:25:56.718 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 2755203232, 0x0, 391868352) end. Duration was 403 ms.
17-03-17 22:25:56.718 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 22:25:56.718 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:25:56.718 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:25:56.718 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-17 22:25:56.718 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 2818576432, 0x0, 418435064) end. Duration was 401 ms.
17-03-17 22:25:56.718 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 22:25:56.718 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:25:56.728 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:25:56.728 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-17 22:25:56.738 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP 1397
17-03-17 22:25:56.738 -07 000000475 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:25:56.738 -07 000000610 INF: FPGA: 'CAMDBLSNAP 452 452 217 217 36698 150' command took 2 ms to send, 1622 ms to get response, and 1633 ms overall
17-03-17 22:25:56.738 -07 000000610 INF: Skipping AutoFocus in Tile 16: adopting Best-Z from the cache: -0.167538
17-03-17 22:25:56.738 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.16754 mm
17-03-17 22:25:56.738 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:25:56.738 -07 000000626 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-17 22:25:56.738 -07 000000626 INF: Y Motor: Moving to 72.3626 mm, started at 71.5176 mm, delta = 0.8450 mm
17-03-17 22:25:56.738 -07 000000482 INF: Z Motor: Entering MoveAbsStepped (DAC = 36599, sync = True, waitForSettling = False)
17-03-17 22:25:56.738 -07 000000482 INF: Z Motor: Moving to -0.167539 mm, started at -0.167188 mm, distance = -0.35 um
17-03-17 22:25:56.748 -07 000000482 INF: FPGA: Xmit ZDACW 36599\n [Z Motor]
17-03-17 22:25:56.748 -07 000000012 INF: FPGA: Recv ZDACW
17-03-17 22:25:56.758 -07 000000482 INF: FPGA: 'ZDACW 36599' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 22:25:56.758 -07 000000482 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:25:56.758 -07 000000547 INF: FPGA: Recv ZDACR 36599
17-03-17 22:25:56.768 -07 000000482 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:56.768 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:25:56.768 -07 000000482 INF: Z Motor: MoveAbsStepped took 21 ms (did NOT wait for settling yet))
17-03-17 22:25:56.768 -07 000000431 INF: FPGA: Recv YRDPOS 146469
17-03-17 22:25:56.778 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 31 ms overall
17-03-17 22:25:56.778 -07 000000626 INF: Y Motor: Encoder = 146469 = motor step 114428.9 = 71.5181 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:25:56.778 -07 000000626 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:25:56.778 -07 000000626 INF: Y Motor: Moving 1351 steps-31
17-03-17 22:25:56.798 -07 000000626 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:25:56.968 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:25:56.968 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 62. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=994, R2=1021, Total=2015. Warn if over 250 bubbles per interval.
17-03-17 22:25:57.168 -07 000000547 INF: FPGA: Recv YMVTILE
17-03-17 22:25:57.168 -07 000000626 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-17 22:25:57.208 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:25:57.218 -07 000000501 INF: FPGA: Recv YRDPOS 148170
17-03-17 22:25:57.218 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 22:25:57.218 -07 000000626 INF: Y Motor: Encoder = 148170 = motor step 115757.8 = 72.3486 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:25:57.218 -07 000000626 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-17 22:25:57.218 -07 000000626 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.845 mm, average velocity = 2.145 mm/sec
17-03-17 22:25:58.168 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:25:58.168 -07 000000501 INF: FPGA: Recv YRDPOS 148170
17-03-17 22:25:58.178 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:25:58.178 -07 000000626 INF: Y Motor: Encoder = 148170 = motor step 115757.8 = 72.3486 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:25:58.198 -07 000000626 INF: Y Motor: After move to 72.362610, error = -0.013977, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:25:58.198 -07 000000626 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:25:58.198 -07 000000626 INF: Y Motor: Moved to 72.3486 after 1457 ms (table move)
17-03-17 22:25:58.198 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.167539 mm (DAC = 36599)
17-03-17 22:25:58.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:58.208 -07 000000547 INF: FPGA: Recv ZSGSRD 35371
17-03-17 22:25:58.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 22:25:58.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:58.208 -07 000000626 INF: FPGA: Recv ZSGSRD 35364
17-03-17 22:25:58.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:25:58.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:58.218 -07 000000431 INF: FPGA: Recv ZSGSRD 35363
17-03-17 22:25:58.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:58.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:58.228 -07 000000438 INF: FPGA: Recv ZSGSRD 35376
17-03-17 22:25:58.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:58.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:58.238 -07 000000438 INF: FPGA: Recv ZSGSRD 35371
17-03-17 22:25:58.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:58.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:58.248 -07 000000438 INF: FPGA: Recv ZSGSRD 35370
17-03-17 22:25:58.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:58.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:58.258 -07 000000626 INF: FPGA: Recv ZSGSRD 35366
17-03-17 22:25:58.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:58.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:58.268 -07 000000438 INF: FPGA: Recv ZSGSRD 35370
17-03-17 22:25:58.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:58.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:58.278 -07 000000438 INF: FPGA: Recv ZSGSRD 35373
17-03-17 22:25:58.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:58.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:58.288 -07 000000438 INF: FPGA: Recv ZSGSRD 35367
17-03-17 22:25:58.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:58.298 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:25:58.298 -07 000000438 INF: FPGA: Recv ZPIEZORD 31309
17-03-17 22:25:58.308 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:58.308 -07 000000610 INF: Z Motor: Piezo is near 46.9 V (nominally 0 to 100 V), expect near 55.8 V, since DAC is at 5.585 V. Piezo Error = -9.0 V.
17-03-17 22:25:58.308 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.5 um, Read 10 ADC samples: Avg = 35369 (-166.7 uncal um), Error = 0.9 uncal um, Median = 35370 (-166.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35363 (-166.6 uncal um), Max = 35376 (-166.7 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 22:25:58.308 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35369, posNoise = 7, negNoise = 6
17-03-17 22:25:58.308 -07 000000610 INF: Z Motor: After move to -0.167539, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:25:58.308 -07 000000610 INF: Z Motor: Settle wait time = 1459 ms, measure time = 104 ms (allowed 150 ms), total time = 1563 ms
17-03-17 22:25:58.308 -07 000000610 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 22:25:58.358 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1614 ms
17-03-17 22:25:58.358 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:25:58.358 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.3486328125, Z-position -0.167541311253078. ----------
17-03-17 22:25:58.358 -07 000000610 INF: Cycle	63	Tile	16	Exposure Settings		A	452	G	217	T	217	C	452
17-03-17 22:25:58.358 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36422, sync = True, waitForSettling = True)
17-03-17 22:25:58.358 -07 000000610 INF: Z Motor: Moving to -0.166729 mm, started at -0.167541 mm, distance = 0.81 um
17-03-17 22:25:58.358 -07 000000610 INF: FPGA: Xmit ZDACW 36422\n [Z Motor]
17-03-17 22:25:58.358 -07 000000431 INF: FPGA: Recv ZDACW
17-03-17 22:25:58.368 -07 000000610 INF: FPGA: 'ZDACW 36422' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 22:25:58.368 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:25:58.368 -07 000000431 INF: FPGA: Recv ZDACR 36422
17-03-17 22:25:58.378 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:58.378 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:25:58.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:58.528 -07 000000482 INF: FPGA: Recv ZSGSRD 35250
17-03-17 22:25:58.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:25:58.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:58.538 -07 000000482 INF: FPGA: Recv ZSGSRD 35244
17-03-17 22:25:58.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:58.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:58.548 -07 000000482 INF: FPGA: Recv ZSGSRD 35245
17-03-17 22:25:58.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:58.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:58.558 -07 000000431 INF: FPGA: Recv ZSGSRD 35249
17-03-17 22:25:58.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:58.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:58.568 -07 000000482 INF: FPGA: Recv ZSGSRD 35240
17-03-17 22:25:58.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:58.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:58.578 -07 000000482 INF: FPGA: Recv ZSGSRD 35241
17-03-17 22:25:58.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:58.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:58.588 -07 000000482 INF: FPGA: Recv ZSGSRD 35245
17-03-17 22:25:58.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:58.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:58.598 -07 000000482 INF: FPGA: Recv ZSGSRD 35245
17-03-17 22:25:58.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:58.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:58.608 -07 000000482 INF: FPGA: Recv ZSGSRD 35242
17-03-17 22:25:58.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:58.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:25:58.618 -07 000000431 INF: FPGA: Recv ZSGSRD 35237
17-03-17 22:25:58.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:58.628 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:25:58.628 -07 000000438 INF: FPGA: Recv ZPIEZORD 31133
17-03-17 22:25:58.638 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:25:58.638 -07 000000610 INF: Z Motor: Piezo is near 46.5 V (nominally 0 to 100 V), expect near 55.6 V, since DAC is at 5.558 V. Piezo Error = -9.1 V.
17-03-17 22:25:58.638 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.7 um, Read 10 ADC samples: Avg = 35244 (-165.9 uncal um), Error = 0.9 uncal um, Median = 35244 (-165.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35237 (-165.8 uncal um), Max = 35250 (-165.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 22:25:58.638 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35244, posNoise = 6, negNoise = 7
17-03-17 22:25:58.638 -07 000000610 INF: Z Motor: After move to -0.166729, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:25:58.638 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-17 22:25:58.638 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:25:58.638 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:25:58.638 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:25:58.648 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:25:58.648 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:25:58.648 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:25:58.648 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:25:58.648 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:25:58.648 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 22:25:58.648 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:25:58.658 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 22:25:58.658 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 22:25:58.668 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:25:58.668 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:25:58.668 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 22:25:58.668 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:25:58.668 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 22:25:58.668 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:25:58.678 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 22:25:58.678 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 12 ms.
17-03-17 22:25:58.678 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 452 452 217 217 36599 150\n [Camera]
17-03-17 22:25:58.878 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:25:59.328 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 644
17-03-17 22:25:59.328 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 644
17-03-17 22:25:59.328 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:25:59.328 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:25:59.328 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2853998696, 0x0, 391868352) start.
17-03-17 22:25:59.708 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2853998696, 0x0, 391868352) end. Duration was 375 ms.
17-03-17 22:25:59.708 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 375 ms.
17-03-17 22:25:59.708 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:25:59.708 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:25:59.708 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-17 22:25:59.768 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 644
17-03-17 22:25:59.768 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36599 837
17-03-17 22:25:59.768 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning grn on 987
17-03-17 22:25:59.768 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 644
17-03-17 22:25:59.768 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:25:59.778 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:25:59.778 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2889420960, 0x0, 418435064) start.
17-03-17 22:26:00.148 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2889420960, 0x0, 418435064) end. Duration was 373 ms.
17-03-17 22:26:00.148 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-17 22:26:00.148 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:26:00.148 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 22:26:00.158 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-17 22:26:00.168 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1204
17-03-17 22:26:00.168 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1204
17-03-17 22:26:00.168 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP 1396
17-03-17 22:26:00.168 -07 000000438 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:26:00.168 -07 000000610 INF: FPGA: 'CAMDBLSNAP 452 452 217 217 36599 150' command took 2 ms to send, 1482 ms to get response, and 1487 ms overall
17-03-17 22:26:00.168 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1204
17-03-17 22:26:00.168 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1204
17-03-17 22:26:00.168 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:26:00.168 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:26:00.168 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2952794160, 0x0, 391868352) start.
17-03-17 22:26:00.268 -07 000000610 INF: Skipping AutoFocus in Tile 17: adopting Best-Z from the cache: -0.167251
17-03-17 22:26:00.268 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.16725 mm
17-03-17 22:26:00.268 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:26:00.558 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2952794160, 0x0, 391868352) end. Duration was 388 ms.
17-03-17 22:26:00.558 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 22:26:00.558 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:26:00.558 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:26:00.558 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 22:26:00.718 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:26:00.718 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:26:00.718 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 22:26:01.118 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 398 ms.
17-03-17 22:26:01.118 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 22:26:01.118 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:26:01.118 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 22:26:01.128 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-17 22:26:01.138 -07 000000438 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-17 22:26:01.138 -07 000000438 INF: Y Motor: Moving to 73.1926 mm, started at 72.3486 mm, delta = 0.8440 mm
17-03-17 22:26:01.138 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:26:01.728 -07 000000424 INF: FPGA: Recv YRDPOS 148170
17-03-17 22:26:01.728 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 580 ms to get response, and 587 ms overall
17-03-17 22:26:01.728 -07 000000438 INF: Y Motor: Encoder = 148170 = motor step 115757.8 = 72.3486 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:26:01.728 -07 000000438 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:26:01.728 -07 000000438 INF: Y Motor: Moving 1350 steps-29
17-03-17 22:26:01.728 -07 000000438 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:26:01.728 -07 000000424 INF: Z Motor: Entering MoveAbsStepped (DAC = 36536, sync = True, waitForSettling = False)
17-03-17 22:26:01.728 -07 000000424 INF: Z Motor: Moving to -0.167251 mm, started at -0.166738 mm, distance = -0.51 um
17-03-17 22:26:01.738 -07 000000424 INF: FPGA: Xmit ZDACW 36536\n [Z Motor]
17-03-17 22:26:02.728 -07 000000512 INF: FPGA: Recv ZDACW
17-03-17 22:26:02.728 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:26:02.728 -07 000000512 INF: FPGA: Recv YMVTILE
17-03-17 22:26:02.728 -07 000000438 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 990 ms to get response, and 999 ms overall
17-03-17 22:26:02.728 -07 000000424 INF: FPGA: 'ZDACW 36536' command took 0 ms to send, 980 ms to get response, and 998 ms overall
17-03-17 22:26:02.728 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 62. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=994, R2=1021, Total=2015. Warn if over 250 bubbles per interval.
17-03-17 22:26:02.728 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 63, FrontChillerTemperature: 4.015368,
17-03-17 22:26:02.738 -07 000000424 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:26:02.738 -07 000000512 INF: FPGA: Recv ZDACR 36536
17-03-17 22:26:02.748 -07 000000424 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-17 22:26:02.748 -07 000000424 INF: Z Motor: MoveAbsStepped took 1018 ms (did NOT wait for settling yet))
17-03-17 22:26:02.778 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:26:02.778 -07 000000576 INF: FPGA: Recv YRDPOS 149863
17-03-17 22:26:02.788 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 22:26:02.788 -07 000000438 INF: Y Motor: Encoder = 149863 = motor step 117080.5 = 73.1753 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:26:02.788 -07 000000438 INF: Y Motor: Position error before settling (table move) = -35 encoder counts (-0.017 mm)
17-03-17 22:26:02.788 -07 000000438 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 999 ms, distance = 0.844 mm, average velocity = 0.845 mm/sec
17-03-17 22:26:03.738 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:26:03.738 -07 000000501 INF: FPGA: Recv YRDPOS 149863
17-03-17 22:26:03.748 -07 000000438 INF: FPGA: 'YRDPOS' command took 1 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:26:03.748 -07 000000438 INF: Y Motor: Encoder = 149863 = motor step 117080.5 = 73.1753 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:26:03.768 -07 000000438 INF: Y Motor: After move to 73.192604, error = -0.017311, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:26:03.768 -07 000000438 INF: Y Motor: Position error after settling (table move) = -35 encoder counts (-0.017 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:26:03.768 -07 000000438 INF: Y Motor: Moved to 73.1753 after 2631 ms (table move)
17-03-17 22:26:03.768 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.167251 mm (DAC = 36536)
17-03-17 22:26:03.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:03.778 -07 000000576 INF: FPGA: Recv ZSGSRD 35327
17-03-17 22:26:03.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 22:26:03.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:03.778 -07 000000512 INF: FPGA: Recv ZSGSRD 35328
17-03-17 22:26:03.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:03.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:03.788 -07 000000382 INF: FPGA: Recv ZSGSRD 35325
17-03-17 22:26:03.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:03.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:03.798 -07 000000501 INF: FPGA: Recv ZSGSRD 35320
17-03-17 22:26:03.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:03.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:03.808 -07 000000382 INF: FPGA: Recv ZSGSRD 35325
17-03-17 22:26:03.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:03.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:03.818 -07 000000501 INF: FPGA: Recv ZSGSRD 35331
17-03-17 22:26:03.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:03.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:03.828 -07 000000382 INF: FPGA: Recv ZSGSRD 35327
17-03-17 22:26:03.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:03.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:03.838 -07 000000501 INF: FPGA: Recv ZSGSRD 35321
17-03-17 22:26:03.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:03.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:03.848 -07 000000512 INF: FPGA: Recv ZSGSRD 35328
17-03-17 22:26:03.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:03.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:03.858 -07 000000501 INF: FPGA: Recv ZSGSRD 35325
17-03-17 22:26:03.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:03.868 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:26:03.868 -07 000000382 INF: FPGA: Recv ZPIEZORD 31258
17-03-17 22:26:03.878 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:03.878 -07 000000610 INF: Z Motor: Piezo is near 46.8 V (nominally 0 to 100 V), expect near 55.8 V, since DAC is at 5.575 V. Piezo Error = -9.0 V.
17-03-17 22:26:03.878 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.3 um, Read 10 ADC samples: Avg = 35326 (-166.4 uncal um), Error = 0.9 uncal um, Median = 35326 (-166.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35320 (-166.4 uncal um), Max = 35331 (-166.4 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 22:26:03.878 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35326, posNoise = 5, negNoise = 6
17-03-17 22:26:03.878 -07 000000610 INF: Z Motor: After move to -0.167251, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:26:03.878 -07 000000610 INF: Z Motor: Settle wait time = 2045 ms, measure time = 103 ms (allowed 150 ms), total time = 2148 ms
17-03-17 22:26:03.878 -07 000000610 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 22:26:03.928 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 3657 ms
17-03-17 22:26:03.928 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:26:03.928 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.17529296875, Z-position -0.167265070130983. ----------
17-03-17 22:26:03.928 -07 000000610 INF: Cycle	63	Tile	17	Exposure Settings		A	452	G	217	T	217	C	452
17-03-17 22:26:03.928 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36359, sync = True, waitForSettling = True)
17-03-17 22:26:03.928 -07 000000610 INF: Z Motor: Moving to -0.166441 mm, started at -0.167265 mm, distance = 0.82 um
17-03-17 22:26:03.928 -07 000000610 INF: FPGA: Xmit ZDACW 36359\n [Z Motor]
17-03-17 22:26:03.928 -07 000000475 INF: FPGA: Recv ZDACW
17-03-17 22:26:03.938 -07 000000610 INF: FPGA: 'ZDACW 36359' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 22:26:03.938 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:26:03.938 -07 000000438 INF: FPGA: Recv ZDACR 36359
17-03-17 22:26:03.948 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:03.948 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:26:04.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:04.098 -07 000000626 INF: FPGA: Recv ZSGSRD 35208
17-03-17 22:26:04.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:26:04.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:04.108 -07 000000438 INF: FPGA: Recv ZSGSRD 35201
17-03-17 22:26:04.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:04.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:04.118 -07 000000475 INF: FPGA: Recv ZSGSRD 35197
17-03-17 22:26:04.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:04.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:04.128 -07 000000626 INF: FPGA: Recv ZSGSRD 35201
17-03-17 22:26:04.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:04.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:04.138 -07 000000476 INF: FPGA: Recv ZSGSRD 35197
17-03-17 22:26:04.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:04.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:04.148 -07 000000512 INF: FPGA: Recv ZSGSRD 35200
17-03-17 22:26:04.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:04.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:04.158 -07 000000626 INF: FPGA: Recv ZSGSRD 35195
17-03-17 22:26:04.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:04.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:04.168 -07 000000512 INF: FPGA: Recv ZSGSRD 35198
17-03-17 22:26:04.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:04.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:04.178 -07 000000626 INF: FPGA: Recv ZSGSRD 35206
17-03-17 22:26:04.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:04.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:04.188 -07 000000512 INF: FPGA: Recv ZSGSRD 35202
17-03-17 22:26:04.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:04.198 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:26:04.198 -07 000000626 INF: FPGA: Recv ZPIEZORD 31120
17-03-17 22:26:04.208 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:04.208 -07 000000610 INF: Z Motor: Piezo is near 46.5 V (nominally 0 to 100 V), expect near 55.5 V, since DAC is at 5.548 V. Piezo Error = -9.0 V.
17-03-17 22:26:04.208 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.4 um, Read 10 ADC samples: Avg = 35200 (-165.6 uncal um), Error = 0.9 uncal um, Median = 35200 (-165.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35195 (-165.6 uncal um), Max = 35208 (-165.6 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 22:26:04.208 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35200, posNoise = 8, negNoise = 5
17-03-17 22:26:04.208 -07 000000610 INF: Z Motor: After move to -0.166441, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:26:04.208 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 22:26:04.208 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:26:04.208 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:26:04.208 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:26:04.208 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:26:04.208 -07 000000547 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:26:04.208 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:26:04.208 -07 000000475 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:26:04.208 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:26:04.208 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:26:04.208 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:26:04.208 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:26:04.208 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:26:04.208 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:26:04.208 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:26:04.218 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:26:04.218 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:26:04.228 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 22:26:04.228 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 22:26:04.228 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 22:26:04.228 -07 000000475 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 22:26:04.228 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 452 452 217 217 36536 150\n [Camera]
17-03-17 22:26:04.428 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:26:04.888 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 644
17-03-17 22:26:04.888 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 644
17-03-17 22:26:04.888 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:26:04.888 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 644
17-03-17 22:26:04.888 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 644
17-03-17 22:26:04.888 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:26:04.888 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:26:04.888 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 22:26:04.898 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:26:04.898 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 22:26:05.078 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36536 837
17-03-17 22:26:05.288 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 395 ms.
17-03-17 22:26:05.288 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 22:26:05.288 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:26:05.288 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 395 ms.
17-03-17 22:26:05.288 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 22:26:05.288 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:26:05.288 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:26:05.288 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 22:26:05.298 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:26:05.298 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-17 22:26:05.318 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning grn on 987
17-03-17 22:26:05.448 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1204
17-03-17 22:26:05.448 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1204
17-03-17 22:26:05.448 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:26:05.448 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:26:05.448 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-17 22:26:05.448 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1204
17-03-17 22:26:05.448 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1204
17-03-17 22:26:05.448 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:26:05.558 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:26:05.558 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 22:26:05.838 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 392 ms.
17-03-17 22:26:05.838 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 22:26:05.838 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:26:05.838 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 22:26:05.838 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 22:26:05.848 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP 1396
17-03-17 22:26:05.848 -07 000000476 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:26:05.848 -07 000000610 INF: FPGA: 'CAMDBLSNAP 452 452 217 217 36536 150' command took 2 ms to send, 1608 ms to get response, and 1619 ms overall
17-03-17 22:26:05.858 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 22:26:05.858 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.17529296875, Z-Position -0.166455619401121. ------
17-03-17 22:26:05.858 -07 000000476 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:26:05.948 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 388 ms.
17-03-17 22:26:05.948 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 22:26:05.948 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:26:05.948 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 22:26:05.958 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 508 ms.
17-03-17 22:26:05.968 -07 000000626 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.17282 mm
17-03-17 22:26:05.968 -07 000000626 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:26:06.898 -07 000000431 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:26:06.898 -07 000000476 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1030 ms to get response, and 1036 ms overall
17-03-17 22:26:06.898 -07 000000476 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:26:06.898 -07 000000431 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-17 22:26:06.898 -07 000000431 INF: Y Motor: Moving to 74.0226 mm, started at 73.1753 mm, delta = 0.8473 mm
17-03-17 22:26:06.908 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:26:07.438 -07 000000482 INF: Z Motor: Entering MoveAbsStepped (DAC = 37753, sync = True, waitForSettling = False)
17-03-17 22:26:07.438 -07 000000482 INF: Z Motor: Moving to -0.172822 mm, started at -0.166456 mm, distance = -6.37 um
17-03-17 22:26:07.438 -07 000000482 INF: FPGA: Xmit ZDACW 37753\n [Z Motor]
17-03-17 22:26:07.968 -07 000000627 INF: FPGA: Recv YRDPOS 149863
17-03-17 22:26:07.968 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:26:07.968 -07 000000627 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:26:07.968 -07 000000627 INF: FPGA: Recv ZDACW
17-03-17 22:26:07.968 -07 000000482 INF: FPGA: 'ZDACW 37753' command took 0 ms to send, 521 ms to get response, and 529 ms overall
17-03-17 22:26:07.968 -07 000000482 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:26:07.968 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 62. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=994, R2=1021, Total=2015. Warn if over 250 bubbles per interval.
17-03-17 22:26:07.968 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1050 ms to get response, and 1066 ms overall
17-03-17 22:26:07.968 -07 000000431 INF: Y Motor: Encoder = 149863 = motor step 117080.5 = 73.1753 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:26:07.968 -07 000000431 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:26:07.968 -07 000000431 INF: Y Motor: Moving 1356 steps-35
17-03-17 22:26:07.968 -07 000000476 INF: FPGA: 'FOCMRRFOC' command took 2 ms to send, 1061 ms to get response, and 1069 ms overall
17-03-17 22:26:07.968 -07 000000627 INF: FPGA: Recv ZDACR 37753
17-03-17 22:26:07.978 -07 000000482 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:26:07.978 -07 000000431 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:26:07.978 -07 000000482 INF: Z Motor: MoveAbsStepped took 538 ms (did NOT wait for settling yet))
17-03-17 22:26:08.278 -07 000000482 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 63, FrontChillerTemperature: 4.015368,
17-03-17 22:26:08.348 -07 000000482 INF: FPGA: Recv YMVTILE
17-03-17 22:26:08.348 -07 000000431 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 386 ms overall
17-03-17 22:26:08.388 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:26:08.388 -07 000000627 INF: FPGA: Recv YRDPOS 151567
17-03-17 22:26:08.398 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:26:08.398 -07 000000431 INF: Y Motor: Encoder = 151567 = motor step 118411.7 = 74.0073 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:26:08.398 -07 000000431 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-17 22:26:08.398 -07 000000431 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 386 ms, distance = 0.847 mm, average velocity = 2.195 mm/sec
17-03-17 22:26:09.348 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:26:09.348 -07 000000424 INF: FPGA: Recv YRDPOS 151567
17-03-17 22:26:09.358 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:26:09.358 -07 000000431 INF: Y Motor: Encoder = 151567 = motor step 118411.7 = 74.0073 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:26:09.368 -07 000000431 INF: Y Motor: After move to 74.022606, error = -0.015282, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:26:09.368 -07 000000431 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:26:09.368 -07 000000431 INF: Y Motor: Moved to 74.0073 after 2474 ms (table move)
17-03-17 22:26:09.378 -07 000000626 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172822 mm (DAC = 37753)
17-03-17 22:26:09.378 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:09.378 -07 000000482 INF: FPGA: Recv ZSGSRD 36190
17-03-17 22:26:09.388 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:26:09.388 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:09.388 -07 000000482 INF: FPGA: Recv ZSGSRD 36191
17-03-17 22:26:09.398 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:09.398 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:09.398 -07 000000431 INF: FPGA: Recv ZSGSRD 36195
17-03-17 22:26:09.408 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:09.408 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:09.408 -07 000000431 INF: FPGA: Recv ZSGSRD 36194
17-03-17 22:26:09.418 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:09.418 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:09.418 -07 000000431 INF: FPGA: Recv ZSGSRD 36194
17-03-17 22:26:09.428 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:09.428 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:09.428 -07 000000482 INF: FPGA: Recv ZSGSRD 36195
17-03-17 22:26:09.438 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:09.438 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:09.438 -07 000000482 INF: FPGA: Recv ZSGSRD 36190
17-03-17 22:26:09.448 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:09.448 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:09.448 -07 000000431 INF: FPGA: Recv ZSGSRD 36190
17-03-17 22:26:09.458 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:09.458 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:09.458 -07 000000482 INF: FPGA: Recv ZSGSRD 36190
17-03-17 22:26:09.468 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:09.468 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:09.468 -07 000000382 INF: FPGA: Recv ZSGSRD 36194
17-03-17 22:26:09.478 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:09.478 -07 000000626 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:26:09.478 -07 000000382 INF: FPGA: Recv ZPIEZORD 32403
17-03-17 22:26:09.488 -07 000000626 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:09.488 -07 000000626 INF: Z Motor: Piezo is near 49.2 V (nominally 0 to 100 V), expect near 57.6 V, since DAC is at 5.761 V. Piezo Error = -8.4 V.
17-03-17 22:26:09.488 -07 000000626 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.8 um, Read 10 ADC samples: Avg = 36192 (-171.9 uncal um), Error = 0.9 uncal um, Median = 36192 (-171.9 uncal um), StdDev = 2 (0.0 uncal um), Range = 5 (0.0 uncal um), Min = 36190 (-171.9 uncal um), Max = 36195 (-172.0 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 2 (0.0 uncal um)
17-03-17 22:26:09.488 -07 000000626 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36192, posNoise = 3, negNoise = 2
17-03-17 22:26:09.488 -07 000000626 INF: Z Motor: After move to -0.172822, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:26:09.488 -07 000000626 INF: Z Motor: Settle wait time = 1941 ms, measure time = 108 ms (allowed 150 ms), total time = 2049 ms
17-03-17 22:26:09.488 -07 000000626 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-17 22:26:09.538 -07 000000626 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 3565 ms
17-03-17 22:26:09.538 -07 000000626 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:26:09.538 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:26:09.538 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:26:09.538 -07 000000431 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:26:09.538 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:26:09.538 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:26:09.538 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:26:09.538 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:26:09.538 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:26:09.548 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 22:26:09.548 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:26:09.558 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 22:26:09.558 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 19 ms.
17-03-17 22:26:09.558 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:26:09.608 -07 000000476 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:26:09.808 -07 000000476 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:26:09.808 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:26:09.808 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:26:09.808 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 22:26:09.848 -07 000000626 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:26:09.848 -07 000000476 INF: FPGA: Recv CAMSNAP
17-03-17 22:26:09.848 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 283 ms to get response, and 284 ms overall
17-03-17 22:26:09.938 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 125 ms.
17-03-17 22:26:09.938 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:26:09.938 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:26:09.938 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-17 22:26:09.948 -07 000000012 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:26:09.948 -07 000000382 INF: Autofocus start
17-03-17 22:26:09.948 -07 000000382 INF: MeasureProfile start
17-03-17 22:26:09.948 -07 000000475 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:26:09.958 -07 000000012 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 22:26:09.958 -07 000000012 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:26:09.958 -07 000000382 INF: MeasureProfile done
17-03-17 22:26:09.958 -07 000000382 INF: X=112  Z correction [um]=0.5011052
17-03-17 22:26:09.958 -07 000000382 INF: Autofocus finished
17-03-17 22:26:10.158 -07 000000576 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:26:10.158 -07 000000012 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:26:10.158 -07 000000610 INF: Suspending Skipping AutoFocus for the next 6 cycles.
17-03-17 22:26:10.158 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.00732421875, Z-position -0.172828437845748. ----------
17-03-17 22:26:10.158 -07 000000610 INF: Cycle	63	Tile	18	Exposure Settings		A	452	G	217	T	217	C	452
17-03-17 22:26:10.168 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36375, sync = True, waitForSettling = True)
17-03-17 22:26:10.168 -07 000000610 INF: Z Motor: Moving to -0.166514 mm, started at -0.172828 mm, distance = 6.31 um
17-03-17 22:26:10.168 -07 000000610 INF: FPGA: Xmit ZDACW 36375\n [Z Motor]
17-03-17 22:26:10.168 -07 000000475 INF: FPGA: Recv ZDACW
17-03-17 22:26:10.178 -07 000000610 INF: FPGA: 'ZDACW 36375' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:26:10.178 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:26:10.178 -07 000000475 INF: FPGA: Recv ZDACR 36375
17-03-17 22:26:10.188 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:10.188 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:26:10.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:10.338 -07 000000382 INF: FPGA: Recv ZSGSRD 35206
17-03-17 22:26:10.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:26:10.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:10.348 -07 000000382 INF: FPGA: Recv ZSGSRD 35214
17-03-17 22:26:10.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:10.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:10.358 -07 000000382 INF: FPGA: Recv ZSGSRD 35212
17-03-17 22:26:10.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:10.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:10.368 -07 000000382 INF: FPGA: Recv ZSGSRD 35212
17-03-17 22:26:10.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:10.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:10.378 -07 000000382 INF: FPGA: Recv ZSGSRD 35209
17-03-17 22:26:10.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:10.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:10.388 -07 000000382 INF: FPGA: Recv ZSGSRD 35213
17-03-17 22:26:10.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:10.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:10.398 -07 000000475 INF: FPGA: Recv ZSGSRD 35214
17-03-17 22:26:10.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:10.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:10.408 -07 000000382 INF: FPGA: Recv ZSGSRD 35209
17-03-17 22:26:10.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:10.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:10.418 -07 000000482 INF: FPGA: Recv ZSGSRD 35209
17-03-17 22:26:10.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:10.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:10.428 -07 000000012 INF: FPGA: Recv ZSGSRD 35210
17-03-17 22:26:10.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:10.438 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:26:10.438 -07 000000012 INF: FPGA: Recv ZPIEZORD 31114
17-03-17 22:26:10.448 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:10.448 -07 000000610 INF: Z Motor: Piezo is near 46.5 V (nominally 0 to 100 V), expect near 55.5 V, since DAC is at 5.550 V. Piezo Error = -9.0 V.
17-03-17 22:26:10.448 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.5 um, Read 10 ADC samples: Avg = 35211 (-165.7 uncal um), Error = 0.9 uncal um, Median = 35211 (-165.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35206 (-165.6 uncal um), Max = 35214 (-165.7 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 22:26:10.448 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35211, posNoise = 3, negNoise = 5
17-03-17 22:26:10.448 -07 000000610 INF: Z Motor: After move to -0.166514, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:26:10.448 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 22:26:10.448 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:26:10.448 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:26:10.448 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:26:10.448 -07 000000459 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:26:10.448 -07 000000475 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:26:10.448 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:26:10.448 -07 000000627 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:26:10.448 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:26:10.448 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:26:10.448 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:26:10.448 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:26:10.448 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:26:10.458 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:26:10.458 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:26:10.458 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:26:10.458 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:26:10.468 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 22:26:10.468 -07 000000475 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 22:26:10.468 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 22:26:10.468 -07 000000627 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 22:26:10.478 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 452 452 217 217 36551 150\n [Camera]
17-03-17 22:26:10.678 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:26:11.128 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 645
17-03-17 22:26:11.128 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 645
17-03-17 22:26:11.128 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:26:11.128 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 645
17-03-17 22:26:11.128 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 645
17-03-17 22:26:11.128 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:26:11.128 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:26:11.128 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 22:26:11.138 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:26:11.138 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 22:26:11.318 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36551 837
17-03-17 22:26:11.468 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP turning grn on 987
17-03-17 22:26:11.508 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 370 ms.
17-03-17 22:26:11.508 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 370 ms.
17-03-17 22:26:11.508 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:26:11.508 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 373 ms.
17-03-17 22:26:11.508 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 374 ms.
17-03-17 22:26:11.508 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:26:11.508 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:26:11.508 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:26:11.508 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 22:26:11.518 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 22:26:11.688 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1204
17-03-17 22:26:11.688 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1204
17-03-17 22:26:11.688 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:26:11.688 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1204
17-03-17 22:26:11.688 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1204
17-03-17 22:26:11.688 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:26:11.688 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start.
17-03-17 22:26:11.688 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:26:11.688 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:26:11.688 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) start.
17-03-17 22:26:11.878 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP 1397
17-03-17 22:26:11.878 -07 000000012 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:26:11.878 -07 000000610 INF: FPGA: 'CAMDBLSNAP 452 452 217 217 36551 150' command took 2 ms to send, 1394 ms to get response, and 1403 ms overall
17-03-17 22:26:11.878 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 22:26:11.878 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.00732421875, Z-Position -0.16652628573468. ------
17-03-17 22:26:11.888 -07 000000482 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:26:11.888 -07 000000627 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.17292 mm
17-03-17 22:26:11.888 -07 000000627 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:26:11.888 -07 000000459 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:26:11.888 -07 000000475 INF: Z Motor: Entering MoveAbsStepped (DAC = 37775, sync = True, waitForSettling = False)
17-03-17 22:26:11.888 -07 000000475 INF: Z Motor: Moving to -0.172923 mm, started at -0.166526 mm, distance = -6.40 um
17-03-17 22:26:11.888 -07 000000626 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-17 22:26:11.888 -07 000000626 INF: Y Motor: Moving to 74.8526 mm, started at 74.0073 mm, delta = 0.8453 mm
17-03-17 22:26:11.898 -07 000000475 INF: FPGA: Xmit ZDACW 37775\n [Z Motor]
17-03-17 22:26:11.898 -07 000000482 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:11.898 -07 000000459 INF: FPGA: Recv ZDACW
17-03-17 22:26:11.908 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:26:11.908 -07 000000475 INF: FPGA: 'ZDACW 37775' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 22:26:11.908 -07 000000382 INF: FPGA: Recv YRDPOS 151567
17-03-17 22:26:11.918 -07 000000482 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:26:11.918 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-17 22:26:11.918 -07 000000626 INF: Y Motor: Encoder = 151567 = motor step 118411.7 = 74.0073 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:26:11.918 -07 000000626 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:26:11.918 -07 000000626 INF: Y Motor: Moving 1352 steps-31
17-03-17 22:26:11.928 -07 000000475 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:26:11.938 -07 000000626 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:26:12.068 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 22:26:12.068 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 22:26:12.068 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:26:12.068 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) end. Duration was 380 ms.
17-03-17 22:26:12.068 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-17 22:26:12.068 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:26:12.078 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:26:12.078 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 22:26:12.078 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:26:12.088 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 22:26:12.088 -07 000000459 INF: FPGA: Recv ZDACR 37775
17-03-17 22:26:12.088 -07 000000459 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:26:12.088 -07 000000475 INF: FPGA: 'ZDACR' command took 0 ms to send, 159 ms to get response, and 188 ms overall
17-03-17 22:26:12.088 -07 000000475 INF: Z Motor: MoveAbsStepped took 203 ms (did NOT wait for settling yet))
17-03-17 22:26:12.088 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 62. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=994, R2=1021, Total=2015. Warn if over 250 bubbles per interval.
17-03-17 22:26:12.118 -07 000000459 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:26:12.118 -07 000000482 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 221 ms overall
17-03-17 22:26:12.308 -07 000000482 INF: FPGA: Recv YMVTILE
17-03-17 22:26:12.308 -07 000000626 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 22:26:12.338 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:26:12.338 -07 000000475 INF: FPGA: Recv YRDPOS 153254
17-03-17 22:26:12.348 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 22:26:12.348 -07 000000626 INF: Y Motor: Encoder = 153254 = motor step 119729.7 = 74.8311 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:26:12.348 -07 000000626 INF: Y Motor: Position error before settling (table move) = -44 encoder counts (-0.021 mm)
17-03-17 22:26:12.348 -07 000000626 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.845 mm, average velocity = 2.129 mm/sec
17-03-17 22:26:13.298 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:26:13.298 -07 000000475 INF: FPGA: Recv YRDPOS 153254
17-03-17 22:26:13.308 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:26:13.308 -07 000000626 INF: Y Motor: Encoder = 153254 = motor step 119729.7 = 74.8311 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:26:13.318 -07 000000626 INF: Y Motor: After move to 74.852608, error = -0.021553, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:26:13.318 -07 000000626 INF: Y Motor: Position error after settling (table move) = -44 encoder counts (-0.021 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:26:13.318 -07 000000626 INF: Y Motor: Moved to 74.8311 after 1429 ms (table move)
17-03-17 22:26:13.328 -07 000000627 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172923 mm (DAC = 37775)
17-03-17 22:26:13.328 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:13.328 -07 000000459 INF: FPGA: Recv ZSGSRD 36213
17-03-17 22:26:13.338 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:26:13.338 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:13.338 -07 000000475 INF: FPGA: Recv ZSGSRD 36207
17-03-17 22:26:13.348 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:13.348 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:13.348 -07 000000459 INF: FPGA: Recv ZSGSRD 36209
17-03-17 22:26:13.358 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:13.358 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:13.358 -07 000000482 INF: FPGA: Recv ZSGSRD 36211
17-03-17 22:26:13.368 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:13.368 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:13.368 -07 000000459 INF: FPGA: Recv ZSGSRD 36210
17-03-17 22:26:13.378 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:13.378 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:13.378 -07 000000475 INF: FPGA: Recv ZSGSRD 36212
17-03-17 22:26:13.388 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:13.388 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:13.388 -07 000000475 INF: FPGA: Recv ZSGSRD 36215
17-03-17 22:26:13.398 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:13.398 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:13.398 -07 000000459 INF: FPGA: Recv ZSGSRD 36206
17-03-17 22:26:13.408 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:13.408 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:13.408 -07 000000626 INF: FPGA: Recv ZSGSRD 36201
17-03-17 22:26:13.418 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:13.418 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:13.418 -07 000000626 INF: FPGA: Recv ZSGSRD 36209
17-03-17 22:26:13.428 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:13.428 -07 000000627 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:26:13.428 -07 000000459 INF: FPGA: Recv ZPIEZORD 32455
17-03-17 22:26:13.438 -07 000000627 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:13.438 -07 000000627 INF: Z Motor: Piezo is near 49.3 V (nominally 0 to 100 V), expect near 57.6 V, since DAC is at 5.764 V. Piezo Error = -8.3 V.
17-03-17 22:26:13.438 -07 000000627 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.9 um, Read 10 ADC samples: Avg = 36209 (-172.1 uncal um), Error = 0.9 uncal um, Median = 36210 (-172.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36201 (-172.0 uncal um), Max = 36215 (-172.1 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 22:26:13.438 -07 000000627 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36209, posNoise = 6, negNoise = 8
17-03-17 22:26:13.438 -07 000000627 INF: Z Motor: After move to -0.172923, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:26:13.438 -07 000000627 INF: Z Motor: Settle wait time = 1435 ms, measure time = 109 ms (allowed 150 ms), total time = 1544 ms
17-03-17 22:26:13.438 -07 000000627 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-17 22:26:13.488 -07 000000627 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1599 ms
17-03-17 22:26:13.488 -07 000000627 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:26:13.488 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:26:13.488 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:26:13.488 -07 000000475 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:26:13.488 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:26:13.488 -07 000000482 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:26:13.488 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:26:13.498 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:26:13.498 -07 000000482 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:26:13.498 -07 000000482 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:26:13.498 -07 000000482 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:26:13.508 -07 000000482 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 22:26:13.508 -07 000000482 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 22:26:13.508 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:26:13.558 -07 000000626 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:26:13.648 -07 000000459 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 63, FrontChillerTemperature: 3.994908,
17-03-17 22:26:13.758 -07 000000459 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:26:13.758 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:26:13.758 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:26:13.758 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 594000200, 0x0, 559484976) start.
17-03-17 22:26:13.798 -07 000000627 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:26:13.798 -07 000000459 INF: FPGA: Recv CAMSNAP
17-03-17 22:26:13.798 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 273 ms to get response, and 284 ms overall
17-03-17 22:26:13.888 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 594000200, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 22:26:13.888 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:26:13.888 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:26:13.888 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-17 22:26:13.898 -07 000000627 INF: Autofocus start
17-03-17 22:26:13.898 -07 000000627 INF: MeasureProfile start
17-03-17 22:26:13.898 -07 000000482 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:26:13.898 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:26:13.908 -07 000000482 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:26:13.908 -07 000000482 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:26:13.908 -07 000000627 INF: MeasureProfile done
17-03-17 22:26:13.908 -07 000000627 INF: X=0  Z correction [um]=-0.0713522
17-03-17 22:26:13.908 -07 000000627 INF: Autofocus finished
17-03-17 22:26:14.108 -07 000000475 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:26:14.108 -07 000000482 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:26:14.108 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.8310546875, Z-position -0.172937649452157. ----------
17-03-17 22:26:14.108 -07 000000610 INF: Cycle	63	Tile	19	Exposure Settings		A	452	G	217	T	217	C	452
17-03-17 22:26:14.118 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36272, sync = True, waitForSettling = True)
17-03-17 22:26:14.118 -07 000000610 INF: Z Motor: Moving to -0.166043 mm, started at -0.172938 mm, distance = 6.90 um
17-03-17 22:26:14.118 -07 000000610 INF: FPGA: Xmit ZDACW 36272\n [Z Motor]
17-03-17 22:26:14.118 -07 000000459 INF: FPGA: Recv ZDACW
17-03-17 22:26:14.128 -07 000000610 INF: FPGA: 'ZDACW 36272' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:26:14.128 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:26:14.128 -07 000000626 INF: FPGA: Recv ZDACR 36272
17-03-17 22:26:14.138 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:14.138 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:26:14.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:14.288 -07 000000459 INF: FPGA: Recv ZSGSRD 35135
17-03-17 22:26:14.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:26:14.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:14.298 -07 000000626 INF: FPGA: Recv ZSGSRD 35138
17-03-17 22:26:14.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:14.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:14.308 -07 000000482 INF: FPGA: Recv ZSGSRD 35139
17-03-17 22:26:14.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:14.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:14.318 -07 000000627 INF: FPGA: Recv ZSGSRD 35139
17-03-17 22:26:14.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:14.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:14.328 -07 000000482 INF: FPGA: Recv ZSGSRD 35140
17-03-17 22:26:14.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:14.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:14.338 -07 000000459 INF: FPGA: Recv ZSGSRD 35137
17-03-17 22:26:14.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:14.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:14.348 -07 000000512 INF: FPGA: Recv ZSGSRD 35140
17-03-17 22:26:14.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:14.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:14.358 -07 000000475 INF: FPGA: Recv ZSGSRD 35141
17-03-17 22:26:14.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:14.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:14.368 -07 000000627 INF: FPGA: Recv ZSGSRD 35136
17-03-17 22:26:14.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:14.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:14.378 -07 000000482 INF: FPGA: Recv ZSGSRD 35138
17-03-17 22:26:14.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:14.388 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:26:14.388 -07 000000627 INF: FPGA: Recv ZPIEZORD 31033
17-03-17 22:26:14.398 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:14.398 -07 000000610 INF: Z Motor: Piezo is near 46.3 V (nominally 0 to 100 V), expect near 55.3 V, since DAC is at 5.535 V. Piezo Error = -9.1 V.
17-03-17 22:26:14.398 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.0 um, Read 10 ADC samples: Avg = 35138 (-165.2 uncal um), Error = 0.9 uncal um, Median = 35138 (-165.2 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 35135 (-165.2 uncal um), Max = 35141 (-165.2 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 22:26:14.398 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35138, posNoise = 3, negNoise = 3
17-03-17 22:26:14.398 -07 000000610 INF: Z Motor: After move to -0.166043, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:26:14.398 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 22:26:14.398 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:26:14.398 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:26:14.398 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:26:14.398 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:26:14.398 -07 000000482 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:26:14.398 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:26:14.398 -07 000000475 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:26:14.398 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:26:14.398 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:26:14.398 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:26:14.398 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:26:14.398 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:26:14.408 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 22:26:14.408 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:26:14.408 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 22:26:14.408 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:26:14.418 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 22:26:14.418 -07 000000482 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 22:26:14.418 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 22:26:14.418 -07 000000475 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 22:26:14.428 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 452 452 217 217 36449 150\n [Camera]
17-03-17 22:26:14.628 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:26:15.078 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 644
17-03-17 22:26:15.078 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 644
17-03-17 22:26:15.078 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:26:15.078 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:26:15.078 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 22:26:15.078 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 644
17-03-17 22:26:15.078 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 644
17-03-17 22:26:15.078 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:26:15.078 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:26:15.078 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 22:26:15.268 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36449 837
17-03-17 22:26:15.418 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP turning grn on 987
17-03-17 22:26:15.468 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 384 ms.
17-03-17 22:26:15.468 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-17 22:26:15.468 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:26:15.468 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:26:15.468 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 392 ms.
17-03-17 22:26:15.468 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 22:26:15.468 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:26:15.468 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:26:15.468 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 22:26:15.478 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 22:26:15.638 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1204
17-03-17 22:26:15.638 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1204
17-03-17 22:26:15.638 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:26:15.638 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:26:15.638 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-17 22:26:15.638 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1204
17-03-17 22:26:15.638 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1204
17-03-17 22:26:15.638 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:26:15.638 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:26:15.638 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 22:26:15.828 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP 1397
17-03-17 22:26:15.828 -07 000000627 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:26:15.828 -07 000000610 INF: FPGA: 'CAMDBLSNAP 452 452 217 217 36449 150' command took 2 ms to send, 1394 ms to get response, and 1404 ms overall
17-03-17 22:26:16.038 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 405 ms.
17-03-17 22:26:16.038 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 22:26:16.038 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:26:16.048 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 404 ms.
17-03-17 22:26:16.048 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-17 22:26:16.048 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:26:16.048 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:26:16.048 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 22:26:16.048 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 413 ms.
17-03-17 22:26:16.048 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-17 22:26:16.058 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-17 22:26:16.098 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 43 ms.
17-03-17 22:26:16.098 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-17 22:26:16.138 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 42 ms.
17-03-17 22:26:16.138 -07 000000610 INF: Move compensator for Bottom-surface imaging.
17-03-17 22:26:16.138 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-17 22:26:16.138 -07 000000627 INF: FPGA: Recv EMCUR 
17-03-17 22:26:16.148 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 22:26:16.148 -07 000000610 INF: FPGA: Xmit EMIN 20 40\n [Compensator]
17-03-17 22:26:16.648 -07 000000501 INF: FPGA: Recv EMIN
17-03-17 22:26:16.648 -07 000000610 INF: FPGA: 'EMIN 20 40' command took 0 ms to send, 493 ms to get response, and 502 ms overall
17-03-17 22:26:16.648 -07 000000610 INF: FPGA: Xmit EMCUR 60\n [Compensator]
17-03-17 22:26:16.648 -07 000000512 INF: FPGA: Recv EMCUR 
17-03-17 22:26:16.658 -07 000000610 INF: FPGA: 'EMCUR 60' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:26:16.658 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 22:26:16.658 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 74.8310546875, Z-Position -0.166057318248331. ------
17-03-17 22:26:16.658 -07 000000438 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:26:16.658 -07 000000475 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.14032 mm
17-03-17 22:26:16.658 -07 000000475 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:26:16.668 -07 000000512 INF: Z Motor: Entering MoveAbsStepped (DAC = 30653, sync = True, waitForSettling = False)
17-03-17 22:26:16.668 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:26:16.668 -07 000000438 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 22:26:16.668 -07 000000512 INF: Z Motor: Moving to -0.140320 mm, started at -0.166057 mm, distance = 25.74 um
17-03-17 22:26:16.668 -07 000000512 INF: FPGA: Xmit ZDACW 30653\n [Z Motor]
17-03-17 22:26:16.668 -07 000000501 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-17 22:26:16.668 -07 000000501 INF: Y Motor: Moving to 59.9126 mm, started at 74.8311 mm, delta = -14.9184 mm
17-03-17 22:26:16.668 -07 000000482 INF: FPGA: Recv ZDACW
17-03-17 22:26:16.678 -07 000000512 INF: FPGA: 'ZDACW 30653' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:26:16.678 -07 000000438 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:26:16.688 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:26:16.688 -07 000000424 INF: FPGA: Recv YRDPOS 153255
17-03-17 22:26:16.698 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-17 22:26:16.698 -07 000000501 INF: Y Motor: Encoder = 153255 = motor step 119730.5 = 74.8315 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:26:16.698 -07 000000512 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:26:16.698 -07 000000627 INF: FPGA: Recv ZDACR 30653
17-03-17 22:26:16.698 -07 000000501 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = -14.9400 mm (-23904.0 steps). UsingTableMove = False
17-03-17 22:26:16.698 -07 000000501 INF: Y Motor: Moving to 122701 encoder counts
17-03-17 22:26:16.708 -07 000000501 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-17 22:26:16.708 -07 000000512 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:26:16.708 -07 000000512 INF: Z Motor: MoveAbsStepped took 39 ms (did NOT wait for settling yet))
17-03-17 22:26:16.878 -07 000000012 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:26:16.878 -07 000000438 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 211 ms overall
17-03-17 22:26:16.968 -07 000000459 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:26:16.968 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 62. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=994, R2=1021, Total=2015. Warn if over 250 bubbles per interval.
17-03-17 22:26:18.328 -07 000000576 INF: FPGA: Recv YMVTO 122703 23902
17-03-17 22:26:18.328 -07 000000501 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1618 ms to get response, and 1633 ms overall
17-03-17 22:26:18.328 -07 000000501 INF: Y Motor: Position error before settling = 2 encoder counts (0.001 mm)
17-03-17 22:26:18.328 -07 000000501 INF: Y Motor: To move from 74.832 to 59.913 (-14.918 mm) should take 23870 steps, but required 23902 steps (14.939 mm). Slippage = 0.020 mm (0.00%).
17-03-17 22:26:18.328 -07 000000501 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1633 ms, distance = 14.918 mm, average velocity = 9.136 mm/sec
17-03-17 22:26:19.008 -07 000000459 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 63, FrontChillerTemperature: 3.994908,
17-03-17 22:26:21.178 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:26:21.178 -07 000000459 INF: FPGA: Recv YRDPOS 122698
17-03-17 22:26:21.188 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:26:21.188 -07 000000501 INF: Y Motor: Encoder = 122698 = motor step 95857.8 = 59.9111 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:26:21.218 -07 000000501 INF: Y Motor: After move to 59.912609, error = -0.001476, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:26:21.218 -07 000000501 INF: Y Motor: Position error after settling = -3 encoder counts (-0.001 mm), Delta during settling = -5 counts (-0.002 mm)
17-03-17 22:26:21.218 -07 000000501 INF: Y Motor: Moved to 59.9111 after 4550 ms
17-03-17 22:26:21.218 -07 000000475 INF: Z Motor: EndOfMoveAbsStepped: target = -0.140320 mm (DAC = 30653)
17-03-17 22:26:21.218 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:21.218 -07 000000576 INF: FPGA: Recv ZSGSRD 31137
17-03-17 22:26:21.228 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 22:26:21.228 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:21.228 -07 000000382 INF: FPGA: Recv ZSGSRD 31135
17-03-17 22:26:21.238 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:21.238 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:21.238 -07 000000576 INF: FPGA: Recv ZSGSRD 31133
17-03-17 22:26:21.248 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:21.248 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:21.248 -07 000000476 INF: FPGA: Recv ZSGSRD 31133
17-03-17 22:26:21.258 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:26:21.258 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:21.258 -07 000000547 INF: FPGA: Recv ZSGSRD 31136
17-03-17 22:26:21.268 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:21.268 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:21.268 -07 000000476 INF: FPGA: Recv ZSGSRD 31133
17-03-17 22:26:21.278 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:21.278 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:21.278 -07 000000382 INF: FPGA: Recv ZSGSRD 31131
17-03-17 22:26:21.288 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:21.288 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:21.288 -07 000000501 INF: FPGA: Recv ZSGSRD 31135
17-03-17 22:26:21.298 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:21.298 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:21.298 -07 000000547 INF: FPGA: Recv ZSGSRD 31134
17-03-17 22:26:21.308 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:21.308 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:21.308 -07 000000382 INF: FPGA: Recv ZSGSRD 31135
17-03-17 22:26:21.318 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:21.318 -07 000000475 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:26:21.318 -07 000000476 INF: FPGA: Recv ZPIEZORD 26797
17-03-17 22:26:21.328 -07 000000475 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:21.328 -07 000000475 INF: Z Motor: Piezo is near 37.2 V (nominally 0 to 100 V), expect near 46.8 V, since DAC is at 4.677 V. Piezo Error = -9.5 V.
17-03-17 22:26:21.328 -07 000000475 INF: Z Motor: ReadAdcAverage: Commanded Z = -140.3 um, Read 10 ADC samples: Avg = 31134 (-139.5 uncal um), Error = 0.8 uncal um, Median = 31134 (-139.5 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 31131 (-139.5 uncal um), Max = 31137 (-139.6 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 22:26:21.328 -07 000000475 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31134, posNoise = 3, negNoise = 3
17-03-17 22:26:21.328 -07 000000475 INF: Z Motor: After move to -0.140320, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:26:21.328 -07 000000475 INF: Z Motor: Settle wait time = 4554 ms, measure time = 105 ms (allowed 150 ms), total time = 4659 ms
17-03-17 22:26:21.328 -07 000000475 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 22:26:21.378 -07 000000475 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4713 ms
17-03-17 22:26:21.378 -07 000000475 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:26:21.378 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:26:21.378 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:26:21.378 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:26:21.378 -07 000000547 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:26:21.378 -07 000000459 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:26:21.378 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:26:21.378 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 22:26:21.378 -07 000000459 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-17 22:26:21.398 -07 000000459 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 20 ms.
17-03-17 22:26:21.398 -07 000000459 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:26:21.408 -07 000000459 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:26:21.408 -07 000000459 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:26:21.408 -07 000000459 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 22:26:21.408 -07 000000459 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 32 ms.
17-03-17 22:26:21.418 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:26:21.458 -07 000000576 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:26:21.658 -07 000000476 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:26:21.658 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:26:21.658 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:26:21.658 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1201016592, 0x0, 559484976) start.
17-03-17 22:26:21.698 -07 000000547 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:26:21.698 -07 000000576 INF: FPGA: Recv CAMSNAP
17-03-17 22:26:21.698 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 284 ms overall
17-03-17 22:26:21.778 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1201016592, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 22:26:21.778 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:26:21.778 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 22:26:21.778 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 22:26:21.798 -07 000000547 INF: Image SNR check: start
17-03-17 22:26:21.798 -07 000000476 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:26:21.798 -07 000000475 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:26:21.808 -07 000000476 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:26:21.808 -07 000000476 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:26:21.818 -07 000000547 INF: Image SNR check: pass  [peak (Max-Min)=58.74]
17-03-17 22:26:21.818 -07 000000547 INF: Autofocus start
17-03-17 22:26:21.818 -07 000000547 INF: MeasureProfile start
17-03-17 22:26:21.828 -07 000000547 INF: MeasureProfile done
17-03-17 22:26:21.828 -07 000000547 INF: X=0  Z correction [um]=-0.02394831
17-03-17 22:26:21.828 -07 000000547 INF: Autofocus finished
17-03-17 22:26:21.968 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:26:21.968 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 62. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=994, R2=1021, Total=2015. Warn if over 250 bubbles per interval.
17-03-17 22:26:22.008 -07 000000547 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:26:22.008 -07 000000476 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:26:22.008 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.9111328125, Z-position -0.140334772832721. ----------
17-03-17 22:26:22.008 -07 000000610 INF: Cycle	63	Tile	1	Exposure Settings		A	452	G	217	T	217	C	452
17-03-17 22:26:22.018 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 29160, sync = True, waitForSettling = True)
17-03-17 22:26:22.018 -07 000000610 INF: Z Motor: Moving to -0.133486 mm, started at -0.140335 mm, distance = 6.85 um
17-03-17 22:26:22.018 -07 000000610 INF: FPGA: Xmit ZDACW 29160\n [Z Motor]
17-03-17 22:26:22.018 -07 000000627 INF: FPGA: Recv ZDACW
17-03-17 22:26:22.028 -07 000000610 INF: FPGA: 'ZDACW 29160' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:26:22.028 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:26:22.028 -07 000000424 INF: FPGA: Recv ZDACR 29160
17-03-17 22:26:22.038 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:22.038 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:26:22.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:22.188 -07 000000501 INF: FPGA: Recv ZSGSRD 30062
17-03-17 22:26:22.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:22.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:22.198 -07 000000424 INF: FPGA: Recv ZSGSRD 30071
17-03-17 22:26:22.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:22.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:22.208 -07 000000475 INF: FPGA: Recv ZSGSRD 30072
17-03-17 22:26:22.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:22.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:22.218 -07 000000627 INF: FPGA: Recv ZSGSRD 30067
17-03-17 22:26:22.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:22.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:22.228 -07 000000382 INF: FPGA: Recv ZSGSRD 30066
17-03-17 22:26:22.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:22.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:22.238 -07 000000576 INF: FPGA: Recv ZSGSRD 30071
17-03-17 22:26:22.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:22.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:22.248 -07 000000475 INF: FPGA: Recv ZSGSRD 30071
17-03-17 22:26:22.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:22.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:22.258 -07 000000476 INF: FPGA: Recv ZSGSRD 30067
17-03-17 22:26:22.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:22.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:22.268 -07 000000459 INF: FPGA: Recv ZSGSRD 30067
17-03-17 22:26:22.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:22.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:22.278 -07 000000576 INF: FPGA: Recv ZSGSRD 30072
17-03-17 22:26:22.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:22.288 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:26:22.288 -07 000000459 INF: FPGA: Recv ZPIEZORD 25666
17-03-17 22:26:22.298 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:22.298 -07 000000610 INF: Z Motor: Piezo is near 34.8 V (nominally 0 to 100 V), expect near 44.5 V, since DAC is at 4.450 V. Piezo Error = -9.7 V.
17-03-17 22:26:22.298 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.5 um, Read 10 ADC samples: Avg = 30069 (-132.7 uncal um), Error = 0.8 uncal um, Median = 30069 (-132.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 30062 (-132.7 uncal um), Max = 30072 (-132.7 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 22:26:22.298 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30069, posNoise = 3, negNoise = 7
17-03-17 22:26:22.298 -07 000000610 INF: Z Motor: After move to -0.133486, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:26:22.298 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 22:26:22.298 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:26:22.298 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:26:22.298 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:26:22.298 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:26:22.298 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:26:22.298 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:26:22.298 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:26:22.298 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:26:22.298 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 22:26:22.298 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:26:22.298 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:26:22.298 -07 000000382 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-17 22:26:22.308 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:26:22.308 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:26:22.318 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 22:26:22.318 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 22:26:22.318 -07 000000382 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 20 ms.
17-03-17 22:26:22.328 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:26:22.328 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 22:26:22.328 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:26:22.338 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 22:26:22.338 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 33 ms.
17-03-17 22:26:22.338 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 452 452 217 217 29337 150\n [Camera]
17-03-17 22:26:22.538 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:26:22.988 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 644
17-03-17 22:26:22.988 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 644
17-03-17 22:26:22.988 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:26:22.988 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:26:22.988 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start.
17-03-17 22:26:22.988 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 644
17-03-17 22:26:22.988 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 644
17-03-17 22:26:22.988 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:26:22.988 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:26:22.988 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) start.
17-03-17 22:26:23.178 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29337 837
17-03-17 22:26:23.328 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP turning grn on 987
17-03-17 22:26:23.378 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 388 ms.
17-03-17 22:26:23.378 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 22:26:23.378 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:26:23.378 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) end. Duration was 388 ms.
17-03-17 22:26:23.378 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 22:26:23.378 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:26:23.378 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:26:23.378 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 22:26:23.388 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 22:26:23.388 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 22:26:23.548 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1204
17-03-17 22:26:23.548 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1204
17-03-17 22:26:23.548 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:26:23.548 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:26:23.548 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-17 22:26:23.548 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1204
17-03-17 22:26:23.548 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1204
17-03-17 22:26:23.548 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:26:23.548 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:26:23.548 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-17 22:26:23.738 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP 1397
17-03-17 22:26:23.738 -07 000000476 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:26:23.738 -07 000000610 INF: FPGA: 'CAMDBLSNAP 452 452 217 217 29337 150' command took 2 ms to send, 1396 ms to get response, and 1403 ms overall
17-03-17 22:26:23.738 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 22:26:23.738 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.9111328125, Z-Position -0.133492986901745. ------
17-03-17 22:26:23.748 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:26:23.748 -07 000000459 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.13991 mm
17-03-17 22:26:23.748 -07 000000459 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:26:23.868 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:26:23.868 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 124 ms overall
17-03-17 22:26:23.868 -07 000000476 INF: Z Motor: Entering MoveAbsStepped (DAC = 30564, sync = True, waitForSettling = False)
17-03-17 22:26:23.868 -07 000000476 INF: Z Motor: Moving to -0.139913 mm, started at -0.133493 mm, distance = -6.42 um
17-03-17 22:26:23.868 -07 000000382 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:26:23.868 -07 000000501 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-17 22:26:23.868 -07 000000501 INF: Y Motor: Moving to 60.7426 mm, started at 59.9111 mm, delta = 0.8315 mm
17-03-17 22:26:23.878 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:26:23.878 -07 000000431 INF: FPGA: Recv YRDPOS 122698
17-03-17 22:26:23.888 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 22:26:23.888 -07 000000501 INF: Y Motor: Encoder = 122698 = motor step 95857.8 = 59.9111 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:26:23.888 -07 000000501 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:26:23.888 -07 000000501 INF: Y Motor: Moving 1330 steps2
17-03-17 22:26:23.888 -07 000000476 INF: FPGA: Xmit ZDACW 30564\n [Z Motor]
17-03-17 22:26:23.888 -07 000000438 INF: FPGA: Recv ZDACW
17-03-17 22:26:23.898 -07 000000476 INF: FPGA: 'ZDACW 30564' command took 1 ms to send, 0 ms to get response, and 22 ms overall
17-03-17 22:26:23.898 -07 000000476 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:26:23.898 -07 000000438 INF: FPGA: Recv ZDACR 30564
17-03-17 22:26:23.908 -07 000000501 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:26:23.908 -07 000000476 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:23.908 -07 000000476 INF: Z Motor: MoveAbsStepped took 33 ms (did NOT wait for settling yet))
17-03-17 22:26:23.958 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 406 ms.
17-03-17 22:26:23.958 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-17 22:26:23.958 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:26:23.958 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 406 ms.
17-03-17 22:26:23.958 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-17 22:26:23.958 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:26:23.958 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:26:23.968 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 22:26:23.968 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 415 ms.
17-03-17 22:26:23.968 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 417 ms.
17-03-17 22:26:24.068 -07 000000512 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:26:24.078 -07 000000382 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 199 ms to get response, and 202 ms overall
17-03-17 22:26:24.278 -07 000000512 INF: FPGA: Recv YMVTILE
17-03-17 22:26:24.278 -07 000000501 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 22:26:24.318 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:26:24.318 -07 000000382 INF: FPGA: Recv YRDPOS 124381
17-03-17 22:26:24.328 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:26:24.328 -07 000000501 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:26:24.328 -07 000000501 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-17 22:26:24.328 -07 000000501 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.831 mm, average velocity = 2.094 mm/sec
17-03-17 22:26:24.378 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 63, FrontChillerTemperature: 4.015368,
17-03-17 22:26:25.278 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:26:25.278 -07 000000512 INF: FPGA: Recv YRDPOS 124381
17-03-17 22:26:25.288 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:25.288 -07 000000501 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:26:25.308 -07 000000501 INF: Y Motor: After move to 60.742607, error = -0.009697, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:26:25.308 -07 000000501 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:26:25.308 -07 000000501 INF: Y Motor: Moved to 60.7329 after 1438 ms (table move)
17-03-17 22:26:25.308 -07 000000459 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139913 mm (DAC = 30564)
17-03-17 22:26:25.308 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:25.318 -07 000000512 INF: FPGA: Recv ZSGSRD 31071
17-03-17 22:26:25.318 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-17 22:26:25.318 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:25.318 -07 000000512 INF: FPGA: Recv ZSGSRD 31071
17-03-17 22:26:25.328 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:26:25.328 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:25.328 -07 000000512 INF: FPGA: Recv ZSGSRD 31059
17-03-17 22:26:25.338 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:25.338 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:25.338 -07 000000501 INF: FPGA: Recv ZSGSRD 31071
17-03-17 22:26:25.348 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:25.348 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:25.348 -07 000000512 INF: FPGA: Recv ZSGSRD 31069
17-03-17 22:26:25.358 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:25.358 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:25.358 -07 000000424 INF: FPGA: Recv ZSGSRD 31065
17-03-17 22:26:25.368 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:25.368 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:25.368 -07 000000424 INF: FPGA: Recv ZSGSRD 31067
17-03-17 22:26:25.378 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:25.378 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:25.378 -07 000000512 INF: FPGA: Recv ZSGSRD 31069
17-03-17 22:26:25.388 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:25.388 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:25.388 -07 000000424 INF: FPGA: Recv ZSGSRD 31067
17-03-17 22:26:25.398 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:25.398 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:25.398 -07 000000512 INF: FPGA: Recv ZSGSRD 31067
17-03-17 22:26:25.408 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:25.408 -07 000000459 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:26:25.408 -07 000000424 INF: FPGA: Recv ZPIEZORD 26998
17-03-17 22:26:25.418 -07 000000459 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:25.418 -07 000000459 INF: Z Motor: Piezo is near 37.7 V (nominally 0 to 100 V), expect near 46.6 V, since DAC is at 4.664 V. Piezo Error = -9.0 V.
17-03-17 22:26:25.418 -07 000000459 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.9 um, Read 10 ADC samples: Avg = 31068 (-139.1 uncal um), Error = 0.8 uncal um, Median = 31068 (-139.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 31059 (-139.1 uncal um), Max = 31071 (-139.1 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 22:26:25.418 -07 000000459 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31068, posNoise = 3, negNoise = 9
17-03-17 22:26:25.418 -07 000000459 INF: Z Motor: After move to -0.139913, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:26:25.418 -07 000000459 INF: Z Motor: Settle wait time = 1442 ms, measure time = 103 ms (allowed 150 ms), total time = 1545 ms
17-03-17 22:26:25.418 -07 000000459 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 22:26:25.468 -07 000000459 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1717 ms
17-03-17 22:26:25.468 -07 000000459 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:26:25.468 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:26:25.468 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:26:25.468 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:26:25.468 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:26:25.468 -07 000000482 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:26:25.468 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:26:25.468 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:26:25.468 -07 000000482 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:26:25.478 -07 000000482 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 22:26:25.478 -07 000000482 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:26:25.488 -07 000000482 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 22:26:25.488 -07 000000482 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 22:26:25.488 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:26:25.538 -07 000000569 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:26:25.738 -07 000000424 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:26:25.738 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:26:25.738 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:26:25.738 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 22:26:25.778 -07 000000569 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:26:25.778 -07 000000512 INF: FPGA: Recv CAMSNAP
17-03-17 22:26:25.778 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 285 ms overall
17-03-17 22:26:25.868 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 22:26:25.868 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:26:25.868 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:26:25.868 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 22:26:25.878 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:26:25.878 -07 000000424 INF: Autofocus start
17-03-17 22:26:25.878 -07 000000424 INF: MeasureProfile start
17-03-17 22:26:25.878 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:26:25.888 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:26:25.888 -07 000000501 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:26:25.888 -07 000000424 INF: MeasureProfile done
17-03-17 22:26:25.888 -07 000000424 INF: X=-48  Z correction [um]=-0.2370583
17-03-17 22:26:25.888 -07 000000424 INF: Autofocus finished
17-03-17 22:26:26.088 -07 000000569 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:26:26.088 -07 000000501 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:26:26.088 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.73291015625, Z-position -0.139910774831364. ----------
17-03-17 22:26:26.088 -07 000000610 INF: Cycle	63	Tile	2	Exposure Settings		A	452	G	217	T	217	C	452
17-03-17 22:26:26.098 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 29025, sync = True, waitForSettling = True)
17-03-17 22:26:26.098 -07 000000610 INF: Z Motor: Moving to -0.132868 mm, started at -0.139911 mm, distance = 7.04 um
17-03-17 22:26:26.098 -07 000000610 INF: FPGA: Xmit ZDACW 29025\n [Z Motor]
17-03-17 22:26:26.098 -07 000000569 INF: FPGA: Recv ZDACW
17-03-17 22:26:26.108 -07 000000610 INF: FPGA: 'ZDACW 29025' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:26.108 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:26:26.108 -07 000000382 INF: FPGA: Recv ZDACR 29025
17-03-17 22:26:26.118 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:26.118 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:26:26.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:26.268 -07 000000501 INF: FPGA: Recv ZSGSRD 29978
17-03-17 22:26:26.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:26:26.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:26.278 -07 000000424 INF: FPGA: Recv ZSGSRD 29977
17-03-17 22:26:26.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:26.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:26.288 -07 000000459 INF: FPGA: Recv ZSGSRD 29974
17-03-17 22:26:26.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:26.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:26.298 -07 000000424 INF: FPGA: Recv ZSGSRD 29971
17-03-17 22:26:26.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:26.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:26.308 -07 000000512 INF: FPGA: Recv ZSGSRD 29970
17-03-17 22:26:26.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:26.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:26.318 -07 000000576 INF: FPGA: Recv ZSGSRD 29977
17-03-17 22:26:26.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:26.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:26.328 -07 000000382 INF: FPGA: Recv ZSGSRD 29964
17-03-17 22:26:26.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:26.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:26.338 -07 000000424 INF: FPGA: Recv ZSGSRD 29971
17-03-17 22:26:26.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:26.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:26.348 -07 000000512 INF: FPGA: Recv ZSGSRD 29979
17-03-17 22:26:26.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:26.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:26.358 -07 000000569 INF: FPGA: Recv ZSGSRD 29978
17-03-17 22:26:26.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:26.368 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:26:26.368 -07 000000459 INF: FPGA: Recv ZPIEZORD 25592
17-03-17 22:26:26.378 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:26.378 -07 000000610 INF: Z Motor: Piezo is near 34.7 V (nominally 0 to 100 V), expect near 44.3 V, since DAC is at 4.429 V. Piezo Error = -9.6 V.
17-03-17 22:26:26.378 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.9 um, Read 10 ADC samples: Avg = 29974 (-132.1 uncal um), Error = 0.8 uncal um, Median = 29976 (-132.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 29964 (-132.0 uncal um), Max = 29979 (-132.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-17 22:26:26.378 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29974, posNoise = 5, negNoise = 10
17-03-17 22:26:26.378 -07 000000610 INF: Z Motor: After move to -0.132868, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:26:26.378 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 22:26:26.378 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:26:26.378 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:26:26.378 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:26:26.378 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:26:26.378 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:26:26.378 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:26:26.378 -07 000000459 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:26:26.378 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:26:26.378 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:26:26.378 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:26:26.378 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:26:26.378 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:26:26.378 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 22:26:26.378 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:26:26.378 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:26:26.388 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:26:26.398 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-17 22:26:26.398 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 18 ms.
17-03-17 22:26:26.398 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-17 22:26:26.398 -07 000000459 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 22:26:26.398 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 452 452 217 217 29202 150\n [Camera]
17-03-17 22:26:26.598 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:26:26.968 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:26:26.968 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 62. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=994, R2=1021, Total=2015. Warn if over 250 bubbles per interval.
17-03-17 22:26:27.048 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 644
17-03-17 22:26:27.048 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 644
17-03-17 22:26:27.048 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:26:27.058 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:26:27.058 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 22:26:27.058 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 644
17-03-17 22:26:27.058 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 644
17-03-17 22:26:27.058 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:26:27.058 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:26:27.058 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 22:26:27.248 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29202 837
17-03-17 22:26:27.398 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP turning grn on 987
17-03-17 22:26:27.448 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 395 ms.
17-03-17 22:26:27.448 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 22:26:27.448 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:26:27.458 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:26:27.458 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 22:26:27.458 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 394 ms.
17-03-17 22:26:27.458 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 22:26:27.458 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:26:27.458 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:26:27.468 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-17 22:26:27.608 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1204
17-03-17 22:26:27.608 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1204
17-03-17 22:26:27.608 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:26:27.618 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1204
17-03-17 22:26:27.618 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1204
17-03-17 22:26:27.618 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:26:27.728 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:26:27.738 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-17 22:26:27.738 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:26:27.738 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 22:26:27.798 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP 1396
17-03-17 22:26:27.808 -07 000000424 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:26:27.808 -07 000000610 INF: FPGA: 'CAMDBLSNAP 452 452 217 217 29202 150' command took 2 ms to send, 1400 ms to get response, and 1403 ms overall
17-03-17 22:26:27.808 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 22:26:27.808 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.73291015625, Z-Position -0.132882686748278. ------
17-03-17 22:26:27.808 -07 000000459 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:26:27.808 -07 000000482 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.13924 mm
17-03-17 22:26:27.808 -07 000000482 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:26:27.808 -07 000000424 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-17 22:26:27.808 -07 000000424 INF: Y Motor: Moving to 61.5726 mm, started at 60.7329 mm, delta = 0.8397 mm
17-03-17 22:26:27.808 -07 000000501 INF: Z Motor: Entering MoveAbsStepped (DAC = 30417, sync = True, waitForSettling = False)
17-03-17 22:26:27.808 -07 000000501 INF: Z Motor: Moving to -0.139240 mm, started at -0.132883 mm, distance = -6.36 um
17-03-17 22:26:27.818 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:26:27.818 -07 000000459 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:26:27.818 -07 000000501 INF: FPGA: Xmit ZDACW 30417\n [Z Motor]
17-03-17 22:26:27.818 -07 000000476 INF: FPGA: Recv ZDACW
17-03-17 22:26:27.828 -07 000000501 INF: FPGA: 'ZDACW 30417' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:26:27.828 -07 000000501 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:26:27.828 -07 000000627 INF: FPGA: Recv ZDACR 30417
17-03-17 22:26:27.838 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:26:27.838 -07 000000501 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:27.838 -07 000000501 INF: Z Motor: MoveAbsStepped took 20 ms (did NOT wait for settling yet))
17-03-17 22:26:27.838 -07 000000627 INF: FPGA: Recv YRDPOS 124382
17-03-17 22:26:27.848 -07 000000459 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:26:27.848 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-17 22:26:27.848 -07 000000424 INF: Y Motor: Encoder = 124382 = motor step 97173.4 = 60.7334 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:26:27.848 -07 000000424 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:26:27.848 -07 000000424 INF: Y Motor: Moving 1343 steps-20
17-03-17 22:26:27.858 -07 000000424 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:26:28.048 -07 000000476 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:26:28.048 -07 000000459 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 232 ms overall
17-03-17 22:26:28.128 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 397 ms.
17-03-17 22:26:28.128 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 510 ms.
17-03-17 22:26:28.128 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:26:28.128 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 394 ms.
17-03-17 22:26:28.128 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 22:26:28.128 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:26:28.138 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:26:28.138 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 523 ms.
17-03-17 22:26:28.138 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:26:28.138 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 523 ms.
17-03-17 22:26:28.228 -07 000000626 INF: FPGA: Recv YMVTILE
17-03-17 22:26:28.228 -07 000000424 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 383 ms overall
17-03-17 22:26:28.268 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:26:28.278 -07 000000476 INF: FPGA: Recv YRDPOS 126083
17-03-17 22:26:28.278 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 22:26:28.278 -07 000000424 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:26:28.278 -07 000000424 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-17 22:26:28.278 -07 000000424 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 383 ms, distance = 0.840 mm, average velocity = 2.192 mm/sec
17-03-17 22:26:29.228 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:26:29.228 -07 000000475 INF: FPGA: Recv YRDPOS 126083
17-03-17 22:26:29.238 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:29.238 -07 000000424 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:26:29.258 -07 000000424 INF: Y Motor: After move to 61.572609, error = -0.008644, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:26:29.258 -07 000000424 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:26:29.258 -07 000000424 INF: Y Motor: Moved to 61.5640 after 1448 ms (table move)
17-03-17 22:26:29.268 -07 000000482 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139240 mm (DAC = 30417)
17-03-17 22:26:29.268 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:29.268 -07 000000424 INF: FPGA: Recv ZSGSRD 30966
17-03-17 22:26:29.278 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:26:29.278 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:29.278 -07 000000475 INF: FPGA: Recv ZSGSRD 30976
17-03-17 22:26:29.288 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:29.288 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:29.288 -07 000000424 INF: FPGA: Recv ZSGSRD 30961
17-03-17 22:26:29.298 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:29.298 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:29.298 -07 000000424 INF: FPGA: Recv ZSGSRD 30969
17-03-17 22:26:29.308 -07 000000482 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:29.308 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:29.308 -07 000000475 INF: FPGA: Recv ZSGSRD 30963
17-03-17 22:26:29.318 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:29.318 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:29.318 -07 000000424 INF: FPGA: Recv ZSGSRD 30959
17-03-17 22:26:29.328 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:29.328 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:29.328 -07 000000476 INF: FPGA: Recv ZSGSRD 30964
17-03-17 22:26:29.338 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:29.338 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:29.338 -07 000000476 INF: FPGA: Recv ZSGSRD 30964
17-03-17 22:26:29.348 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:29.348 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:29.348 -07 000000475 INF: FPGA: Recv ZSGSRD 30974
17-03-17 22:26:29.358 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:29.358 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:29.358 -07 000000476 INF: FPGA: Recv ZSGSRD 30961
17-03-17 22:26:29.368 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:29.368 -07 000000482 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:26:29.368 -07 000000475 INF: FPGA: Recv ZPIEZORD 26885
17-03-17 22:26:29.378 -07 000000482 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:29.378 -07 000000482 INF: Z Motor: Piezo is near 37.4 V (nominally 0 to 100 V), expect near 46.4 V, since DAC is at 4.641 V. Piezo Error = -9.0 V.
17-03-17 22:26:29.378 -07 000000482 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.2 um, Read 10 ADC samples: Avg = 30966 (-138.5 uncal um), Error = 0.8 uncal um, Median = 30964 (-138.4 uncal um), StdDev = 6 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 30959 (-138.4 uncal um), Max = 30976 (-138.5 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 22:26:29.378 -07 000000482 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30966, posNoise = 10, negNoise = 7
17-03-17 22:26:29.378 -07 000000482 INF: Z Motor: After move to -0.139240, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:26:29.378 -07 000000482 INF: Z Motor: Settle wait time = 1451 ms, measure time = 109 ms (allowed 150 ms), total time = 1560 ms
17-03-17 22:26:29.378 -07 000000482 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-17 22:26:29.428 -07 000000482 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1613 ms
17-03-17 22:26:29.428 -07 000000482 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:26:29.428 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:26:29.428 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:26:29.428 -07 000000475 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:26:29.428 -07 000000482 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:26:29.428 -07 000000476 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:26:29.428 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:26:29.428 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 22:26:29.428 -07 000000476 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:26:29.438 -07 000000476 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 22:26:29.438 -07 000000476 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:26:29.448 -07 000000476 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 22:26:29.448 -07 000000476 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 22:26:29.448 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:26:29.498 -07 000000482 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:26:29.698 -07 000000424 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:26:29.698 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:26:29.698 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:26:29.698 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 22:26:29.728 -07 000000482 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:26:29.738 -07 000000476 INF: FPGA: Recv CAMSNAP
17-03-17 22:26:29.738 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 284 ms overall
17-03-17 22:26:29.748 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 63, FrontChillerTemperature: 4.014009,
17-03-17 22:26:29.818 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 123 ms.
17-03-17 22:26:29.818 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:26:29.818 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:26:29.818 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 126 ms.
17-03-17 22:26:29.838 -07 000000475 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:26:29.838 -07 000000476 INF: Autofocus start
17-03-17 22:26:29.838 -07 000000476 INF: MeasureProfile start
17-03-17 22:26:29.838 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:26:29.848 -07 000000475 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 22:26:29.848 -07 000000475 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:26:29.848 -07 000000476 INF: MeasureProfile done
17-03-17 22:26:29.848 -07 000000476 INF: X=64  Z correction [um]=0.2839165
17-03-17 22:26:29.848 -07 000000476 INF: Autofocus finished
17-03-17 22:26:30.048 -07 000000547 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:26:30.048 -07 000000475 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:26:30.048 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.56396484375, Z-position -0.139255505192905. ----------
17-03-17 22:26:30.048 -07 000000610 INF: Cycle	63	Tile	3	Exposure Settings		A	452	G	217	T	217	C	452
17-03-17 22:26:30.058 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28992, sync = True, waitForSettling = True)
17-03-17 22:26:30.058 -07 000000610 INF: Z Motor: Moving to -0.132717 mm, started at -0.139256 mm, distance = 6.54 um
17-03-17 22:26:30.068 -07 000000610 INF: FPGA: Xmit ZDACW 28992\n [Z Motor]
17-03-17 22:26:30.068 -07 000000431 INF: FPGA: Recv ZDACW
17-03-17 22:26:30.078 -07 000000610 INF: FPGA: 'ZDACW 28992' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-17 22:26:30.078 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:26:30.078 -07 000000476 INF: FPGA: Recv ZDACR 28992
17-03-17 22:26:30.088 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:30.088 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:26:30.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:30.238 -07 000000476 INF: FPGA: Recv ZSGSRD 29948
17-03-17 22:26:30.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:26:30.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:30.248 -07 000000501 INF: FPGA: Recv ZSGSRD 29950
17-03-17 22:26:30.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:30.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:30.258 -07 000000547 INF: FPGA: Recv ZSGSRD 29952
17-03-17 22:26:30.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:30.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:30.268 -07 000000547 INF: FPGA: Recv ZSGSRD 29949
17-03-17 22:26:30.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:30.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:30.278 -07 000000501 INF: FPGA: Recv ZSGSRD 29949
17-03-17 22:26:30.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:30.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:30.288 -07 000000431 INF: FPGA: Recv ZSGSRD 29952
17-03-17 22:26:30.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:30.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:30.298 -07 000000476 INF: FPGA: Recv ZSGSRD 29954
17-03-17 22:26:30.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:30.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:30.308 -07 000000424 INF: FPGA: Recv ZSGSRD 29943
17-03-17 22:26:30.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:30.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:30.318 -07 000000547 INF: FPGA: Recv ZSGSRD 29946
17-03-17 22:26:30.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:30.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:30.328 -07 000000482 INF: FPGA: Recv ZSGSRD 29948
17-03-17 22:26:30.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:30.338 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:26:30.338 -07 000000547 INF: FPGA: Recv ZPIEZORD 25601
17-03-17 22:26:30.348 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:30.348 -07 000000610 INF: Z Motor: Piezo is near 34.7 V (nominally 0 to 100 V), expect near 44.2 V, since DAC is at 4.424 V. Piezo Error = -9.5 V.
17-03-17 22:26:30.348 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.7 um, Read 10 ADC samples: Avg = 29949 (-131.9 uncal um), Error = 0.8 uncal um, Median = 29949 (-131.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29943 (-131.9 uncal um), Max = 29954 (-132.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 22:26:30.348 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29949, posNoise = 5, negNoise = 6
17-03-17 22:26:30.348 -07 000000610 INF: Z Motor: After move to -0.132717, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:26:30.348 -07 000000610 INF: Z Motor: MoveAbsStepped took 289 ms)
17-03-17 22:26:30.348 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:26:30.348 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:26:30.348 -07 000000431 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:26:30.348 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:26:30.348 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:26:30.348 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:26:30.348 -07 000000547 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:26:30.348 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:26:30.348 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 22:26:30.348 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:26:30.348 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:26:30.348 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:26:30.358 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 22:26:30.358 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:26:30.358 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 22:26:30.358 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:26:30.368 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 22:26:30.368 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 22:26:30.368 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 22:26:30.368 -07 000000547 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 22:26:30.368 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 452 452 217 217 29169 150\n [Camera]
17-03-17 22:26:30.568 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:26:31.018 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 644
17-03-17 22:26:31.018 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 644
17-03-17 22:26:31.018 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:26:31.018 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 644
17-03-17 22:26:31.018 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 644
17-03-17 22:26:31.018 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:26:31.018 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:26:31.018 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-17 22:26:31.028 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:26:31.028 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 22:26:31.208 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29169 837
17-03-17 22:26:31.358 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP turning grn on 987
17-03-17 22:26:31.398 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 373 ms.
17-03-17 22:26:31.398 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-17 22:26:31.398 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:26:31.398 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 22:26:31.398 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-17 22:26:31.398 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:26:31.398 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:26:31.408 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:26:31.408 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 22:26:31.408 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-17 22:26:31.578 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1204
17-03-17 22:26:31.578 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1204
17-03-17 22:26:31.578 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:26:31.578 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:26:31.578 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start.
17-03-17 22:26:31.578 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1204
17-03-17 22:26:31.578 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1204
17-03-17 22:26:31.578 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:26:31.578 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:26:31.578 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) start.
17-03-17 22:26:31.768 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP 1396
17-03-17 22:26:31.768 -07 000000459 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:26:31.768 -07 000000610 INF: FPGA: 'CAMDBLSNAP 452 452 217 217 29169 150' command took 2 ms to send, 1397 ms to get response, and 1403 ms overall
17-03-17 22:26:31.768 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 22:26:31.768 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.56396484375, Z-Position -0.132722081444734. ------
17-03-17 22:26:31.778 -07 000000424 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.13914 mm
17-03-17 22:26:31.778 -07 000000424 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:26:31.778 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:26:31.778 -07 000000501 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-17 22:26:31.778 -07 000000501 INF: Y Motor: Moving to 62.4026 mm, started at 61.5640 mm, delta = 0.8386 mm
17-03-17 22:26:31.778 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:26:31.778 -07 000000459 INF: Z Motor: Entering MoveAbsStepped (DAC = 30394, sync = True, waitForSettling = False)
17-03-17 22:26:31.778 -07 000000459 INF: Z Motor: Moving to -0.139135 mm, started at -0.132722 mm, distance = -6.41 um
17-03-17 22:26:31.788 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:26:31.788 -07 000000459 INF: FPGA: Xmit ZDACW 30394\n [Z Motor]
17-03-17 22:26:31.788 -07 000000382 INF: FPGA: Recv ZDACW
17-03-17 22:26:31.798 -07 000000459 INF: FPGA: 'ZDACW 30394' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:26:31.798 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:26:31.798 -07 000000012 INF: FPGA: Recv YRDPOS 126083
17-03-17 22:26:31.808 -07 000000431 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:26:31.808 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-17 22:26:31.808 -07 000000501 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:26:31.808 -07 000000501 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:26:31.808 -07 000000501 INF: Y Motor: Moving 1342 steps-18
17-03-17 22:26:31.818 -07 000000459 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:26:31.818 -07 000000569 INF: FPGA: Recv ZDACR 30394
17-03-17 22:26:31.828 -07 000000501 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:26:31.828 -07 000000459 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:26:31.828 -07 000000459 INF: Z Motor: MoveAbsStepped took 42 ms (did NOT wait for settling yet))
17-03-17 22:26:31.968 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) end. Duration was 387 ms.
17-03-17 22:26:31.968 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 22:26:31.968 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:26:31.968 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 392 ms.
17-03-17 22:26:31.968 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:26:31.968 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 22:26:31.968 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:26:31.968 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 62. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=994, R2=1021, Total=2015. Warn if over 250 bubbles per interval.
17-03-17 22:26:31.978 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:26:31.978 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 22:26:31.978 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 22:26:31.978 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 22:26:32.008 -07 000000475 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:26:32.008 -07 000000431 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 22:26:32.208 -07 000000012 INF: FPGA: Recv YMVTILE
17-03-17 22:26:32.208 -07 000000501 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 400 ms overall
17-03-17 22:26:32.248 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:26:32.248 -07 000000459 INF: FPGA: Recv YRDPOS 127786
17-03-17 22:26:32.258 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:26:32.258 -07 000000501 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:26:32.258 -07 000000501 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-17 22:26:32.258 -07 000000501 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 401 ms, distance = 0.839 mm, average velocity = 2.091 mm/sec
17-03-17 22:26:33.208 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:26:33.208 -07 000000459 INF: FPGA: Recv YRDPOS 127786
17-03-17 22:26:33.218 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:26:33.218 -07 000000501 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:26:33.238 -07 000000501 INF: Y Motor: After move to 62.402607, error = -0.007099, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:26:33.238 -07 000000501 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:26:33.238 -07 000000501 INF: Y Motor: Moved to 62.3955 after 1458 ms (table move)
17-03-17 22:26:33.238 -07 000000424 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139135 mm (DAC = 30394)
17-03-17 22:26:33.238 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:33.248 -07 000000431 INF: FPGA: Recv ZSGSRD 30961
17-03-17 22:26:33.248 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 22:26:33.248 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:33.248 -07 000000482 INF: FPGA: Recv ZSGSRD 30940
17-03-17 22:26:33.258 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:33.258 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:33.258 -07 000000482 INF: FPGA: Recv ZSGSRD 30949
17-03-17 22:26:33.268 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:33.268 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:33.268 -07 000000431 INF: FPGA: Recv ZSGSRD 30956
17-03-17 22:26:33.278 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:33.278 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:33.278 -07 000000482 INF: FPGA: Recv ZSGSRD 30947
17-03-17 22:26:33.288 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:33.288 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:33.288 -07 000000438 INF: FPGA: Recv ZSGSRD 30953
17-03-17 22:26:33.298 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:33.298 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:33.298 -07 000000431 INF: FPGA: Recv ZSGSRD 30952
17-03-17 22:26:33.308 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:33.308 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:33.308 -07 000000482 INF: FPGA: Recv ZSGSRD 30948
17-03-17 22:26:33.318 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:33.318 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:33.318 -07 000000431 INF: FPGA: Recv ZSGSRD 30951
17-03-17 22:26:33.328 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:26:33.328 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:33.328 -07 000000482 INF: FPGA: Recv ZSGSRD 30937
17-03-17 22:26:33.338 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:33.338 -07 000000424 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:26:33.338 -07 000000482 INF: FPGA: Recv ZPIEZORD 26910
17-03-17 22:26:33.348 -07 000000424 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:33.348 -07 000000424 INF: Z Motor: Piezo is near 37.5 V (nominally 0 to 100 V), expect near 46.4 V, since DAC is at 4.638 V. Piezo Error = -8.9 V.
17-03-17 22:26:33.348 -07 000000424 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.1 um, Read 10 ADC samples: Avg = 30949 (-138.3 uncal um), Error = 0.8 uncal um, Median = 30950 (-138.4 uncal um), StdDev = 7 (0.0 uncal um), Range = 24 (0.2 uncal um), Min = 30937 (-138.3 uncal um), Max = 30961 (-138.4 uncal um), Pos Noise = 12 (0.1 uncal um), Neg Noise = 12 (0.1 uncal um)
17-03-17 22:26:33.348 -07 000000424 INF: Z Motor: ADC noise = 12, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30949, posNoise = 12, negNoise = 12
17-03-17 22:26:33.348 -07 000000424 INF: Z Motor: After move to -0.139135, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:26:33.348 -07 000000424 INF: Z Motor: Settle wait time = 1458 ms, measure time = 103 ms (allowed 150 ms), total time = 1561 ms
17-03-17 22:26:33.348 -07 000000424 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 22:26:33.398 -07 000000424 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1616 ms
17-03-17 22:26:33.398 -07 000000424 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:26:33.398 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:26:33.398 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:26:33.398 -07 000000431 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:26:33.398 -07 000000482 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:26:33.398 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:26:33.398 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:26:33.398 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 22:26:33.398 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:26:33.408 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:26:33.408 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:26:33.408 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 22:26:33.408 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-17 22:26:33.418 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:26:33.458 -07 000000482 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:26:33.658 -07 000000482 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:26:33.658 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:26:33.658 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:26:33.658 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 594000200, 0x0, 559484976) start.
17-03-17 22:26:33.698 -07 000000482 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:26:33.698 -07 000000424 INF: FPGA: Recv CAMSNAP
17-03-17 22:26:33.698 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 284 ms overall
17-03-17 22:26:33.778 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 594000200, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 22:26:33.778 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:26:33.778 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:26:33.778 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 22:26:33.798 -07 000000424 INF: Autofocus start
17-03-17 22:26:33.798 -07 000000424 INF: MeasureProfile start
17-03-17 22:26:33.798 -07 000000438 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:26:33.798 -07 000000482 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:26:33.808 -07 000000438 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:26:33.808 -07 000000438 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:26:33.808 -07 000000424 INF: MeasureProfile done
17-03-17 22:26:33.808 -07 000000424 INF: X=16  Z correction [um]=0.0530179
17-03-17 22:26:33.808 -07 000000424 INF: Autofocus finished
17-03-17 22:26:34.008 -07 000000424 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:26:34.008 -07 000000438 INF: FPGA: 'FOCMRRIMG' command took 1 ms to send, 194 ms to get response, and 204 ms overall
17-03-17 22:26:34.008 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.3955078125, Z-position -0.139146293586495. ----------
17-03-17 22:26:34.008 -07 000000610 INF: Cycle	63	Tile	4	Exposure Settings		A	452	G	217	T	217	C	452
17-03-17 22:26:34.018 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28918, sync = True, waitForSettling = True)
17-03-17 22:26:34.018 -07 000000610 INF: Z Motor: Moving to -0.132378 mm, started at -0.139146 mm, distance = 6.77 um
17-03-17 22:26:34.018 -07 000000610 INF: FPGA: Xmit ZDACW 28918\n [Z Motor]
17-03-17 22:26:34.018 -07 000000438 INF: FPGA: Recv ZDACW
17-03-17 22:26:34.028 -07 000000610 INF: FPGA: 'ZDACW 28918' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:26:34.028 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:26:34.028 -07 000000424 INF: FPGA: Recv ZDACR 28918
17-03-17 22:26:34.038 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:34.038 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:26:34.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:34.188 -07 000000424 INF: FPGA: Recv ZSGSRD 29895
17-03-17 22:26:34.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:26:34.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:34.198 -07 000000438 INF: FPGA: Recv ZSGSRD 29904
17-03-17 22:26:34.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:34.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:34.208 -07 000000424 INF: FPGA: Recv ZSGSRD 29897
17-03-17 22:26:34.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:34.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:34.218 -07 000000431 INF: FPGA: Recv ZSGSRD 29893
17-03-17 22:26:34.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:34.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:34.228 -07 000000482 INF: FPGA: Recv ZSGSRD 29893
17-03-17 22:26:34.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:26:34.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:34.238 -07 000000438 INF: FPGA: Recv ZSGSRD 29902
17-03-17 22:26:34.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:34.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:34.248 -07 000000482 INF: FPGA: Recv ZSGSRD 29894
17-03-17 22:26:34.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:34.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:34.258 -07 000000482 INF: FPGA: Recv ZSGSRD 29898
17-03-17 22:26:34.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:34.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:34.268 -07 000000482 INF: FPGA: Recv ZSGSRD 29896
17-03-17 22:26:34.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:34.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:34.278 -07 000000438 INF: FPGA: Recv ZSGSRD 29894
17-03-17 22:26:34.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:34.288 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:26:34.288 -07 000000424 INF: FPGA: Recv ZPIEZORD 25550
17-03-17 22:26:34.298 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:34.298 -07 000000610 INF: Z Motor: Piezo is near 34.6 V (nominally 0 to 100 V), expect near 44.1 V, since DAC is at 4.413 V. Piezo Error = -9.5 V.
17-03-17 22:26:34.298 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.4 um, Read 10 ADC samples: Avg = 29897 (-131.6 uncal um), Error = 0.8 uncal um, Median = 29896 (-131.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29893 (-131.6 uncal um), Max = 29904 (-131.6 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 22:26:34.298 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29897, posNoise = 7, negNoise = 4
17-03-17 22:26:34.298 -07 000000610 INF: Z Motor: After move to -0.132378, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:26:34.298 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 22:26:34.298 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:26:34.298 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:26:34.298 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:26:34.298 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:26:34.298 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:26:34.298 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:26:34.298 -07 000000482 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:26:34.298 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:26:34.298 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 22:26:34.298 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:26:34.298 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 22:26:34.298 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:26:34.298 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 22:26:34.298 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:26:34.298 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:26:34.308 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:26:34.308 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 22:26:34.308 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 22:26:34.308 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 22:26:34.308 -07 000000482 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 22:26:34.318 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 452 452 217 217 29095 150\n [Camera]
17-03-17 22:26:34.518 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:26:34.968 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 644
17-03-17 22:26:34.968 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 644
17-03-17 22:26:34.968 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:26:34.968 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:26:34.968 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 22:26:34.968 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 644
17-03-17 22:26:34.968 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 644
17-03-17 22:26:34.968 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:26:35.088 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:26:35.088 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 22:26:35.118 -07 000000482 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 63, FrontChillerTemperature: 4.000345,
17-03-17 22:26:35.158 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29095 838
17-03-17 22:26:35.308 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP turning grn on 987
17-03-17 22:26:35.358 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 383 ms.
17-03-17 22:26:35.358 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 22:26:35.358 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:26:35.358 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:26:35.358 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 22:26:35.468 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 22:26:35.468 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-17 22:26:35.468 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:26:35.478 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:26:35.478 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 509 ms.
17-03-17 22:26:35.528 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1204
17-03-17 22:26:35.528 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1204
17-03-17 22:26:35.528 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:26:35.538 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1204
17-03-17 22:26:35.538 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1204
17-03-17 22:26:35.538 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:26:35.538 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:26:35.538 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 22:26:35.538 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:26:35.538 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) start.
17-03-17 22:26:35.718 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP 1397
17-03-17 22:26:35.718 -07 000000626 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:26:35.718 -07 000000610 INF: FPGA: 'CAMDBLSNAP 452 452 217 217 29095 150' command took 2 ms to send, 1397 ms to get response, and 1404 ms overall
17-03-17 22:26:35.718 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 22:26:35.718 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.3955078125, Z-Position -0.132388022413362. ------
17-03-17 22:26:35.728 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:26:35.728 -07 000000482 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.13915 mm
17-03-17 22:26:35.728 -07 000000482 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:26:35.728 -07 000000576 INF: Z Motor: Entering MoveAbsStepped (DAC = 30397, sync = True, waitForSettling = False)
17-03-17 22:26:35.728 -07 000000576 INF: Z Motor: Moving to -0.139149 mm, started at -0.132388 mm, distance = -6.76 um
17-03-17 22:26:35.728 -07 000000431 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-17 22:26:35.728 -07 000000431 INF: Y Motor: Moving to 63.2326 mm, started at 62.3955 mm, delta = 0.8371 mm
17-03-17 22:26:35.728 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:26:35.738 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 22:26:35.738 -07 000000576 INF: FPGA: Xmit ZDACW 30397\n [Z Motor]
17-03-17 22:26:35.738 -07 000000569 INF: FPGA: Recv ZDACW
17-03-17 22:26:35.748 -07 000000576 INF: FPGA: 'ZDACW 30397' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 22:26:35.748 -07 000000576 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:26:35.748 -07 000000501 INF: FPGA: Recv ZDACR 30397
17-03-17 22:26:35.758 -07 000000576 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:26:35.758 -07 000000576 INF: Z Motor: MoveAbsStepped took 21 ms (did NOT wait for settling yet))
17-03-17 22:26:35.758 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:26:35.758 -07 000000501 INF: FPGA: Recv YRDPOS 127787
17-03-17 22:26:35.768 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-17 22:26:35.768 -07 000000431 INF: Y Motor: Encoder = 127787 = motor step 99833.6 = 62.3960 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:26:35.768 -07 000000424 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:26:35.768 -07 000000431 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:26:35.768 -07 000000431 INF: Y Motor: Moving 1339 steps-15
17-03-17 22:26:35.778 -07 000000431 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:26:35.928 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 394 ms.
17-03-17 22:26:35.928 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 22:26:35.928 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:26:35.938 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:26:35.938 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 22:26:35.938 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) end. Duration was 395 ms.
17-03-17 22:26:35.938 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 22:26:35.938 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:26:35.938 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:26:35.948 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-17 22:26:35.968 -07 000000512 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:26:35.968 -07 000000424 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 233 ms overall
17-03-17 22:26:36.148 -07 000000627 INF: FPGA: Recv YMVTILE
17-03-17 22:26:36.148 -07 000000431 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 384 ms overall
17-03-17 22:26:36.188 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:26:36.198 -07 000000626 INF: FPGA: Recv YRDPOS 129483
17-03-17 22:26:36.198 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:26:36.198 -07 000000431 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:26:36.198 -07 000000431 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-17 22:26:36.198 -07 000000431 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 384 ms, distance = 0.837 mm, average velocity = 2.180 mm/sec
17-03-17 22:26:36.968 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:26:36.968 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 62. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=994, R2=1021, Total=2015. Warn if over 250 bubbles per interval.
17-03-17 22:26:37.148 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:26:37.148 -07 000000424 INF: FPGA: Recv YRDPOS 129483
17-03-17 22:26:37.158 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:26:37.158 -07 000000431 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:26:37.178 -07 000000431 INF: Y Motor: After move to 63.232609, error = -0.008488, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:26:37.178 -07 000000431 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:26:37.178 -07 000000431 INF: Y Motor: Moved to 63.2241 after 1446 ms (table move)
17-03-17 22:26:37.178 -07 000000482 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139149 mm (DAC = 30397)
17-03-17 22:26:37.178 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:37.188 -07 000000626 INF: FPGA: Recv ZSGSRD 30962
17-03-17 22:26:37.188 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 22:26:37.188 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:37.188 -07 000000626 INF: FPGA: Recv ZSGSRD 30945
17-03-17 22:26:37.198 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:26:37.198 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:37.198 -07 000000626 INF: FPGA: Recv ZSGSRD 30943
17-03-17 22:26:37.208 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:37.208 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:37.208 -07 000000569 INF: FPGA: Recv ZSGSRD 30956
17-03-17 22:26:37.218 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:37.218 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:37.218 -07 000000512 INF: FPGA: Recv ZSGSRD 30953
17-03-17 22:26:37.228 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:37.228 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:37.228 -07 000000512 INF: FPGA: Recv ZSGSRD 30959
17-03-17 22:26:37.238 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:37.238 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:37.238 -07 000000569 INF: FPGA: Recv ZSGSRD 30957
17-03-17 22:26:37.248 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:37.248 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:37.248 -07 000000512 INF: FPGA: Recv ZSGSRD 30947
17-03-17 22:26:37.258 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:37.258 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:37.258 -07 000000626 INF: FPGA: Recv ZSGSRD 30946
17-03-17 22:26:37.268 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:37.268 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:37.268 -07 000000512 INF: FPGA: Recv ZSGSRD 30949
17-03-17 22:26:37.278 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:37.278 -07 000000482 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:26:37.278 -07 000000512 INF: FPGA: Recv ZPIEZORD 26939
17-03-17 22:26:37.288 -07 000000482 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:37.288 -07 000000482 INF: Z Motor: Piezo is near 37.5 V (nominally 0 to 100 V), expect near 46.4 V, since DAC is at 4.638 V. Piezo Error = -8.8 V.
17-03-17 22:26:37.288 -07 000000482 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.1 um, Read 10 ADC samples: Avg = 30952 (-138.4 uncal um), Error = 0.8 uncal um, Median = 30951 (-138.4 uncal um), StdDev = 7 (0.0 uncal um), Range = 19 (0.1 uncal um), Min = 30943 (-138.3 uncal um), Max = 30962 (-138.4 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 22:26:37.288 -07 000000482 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30952, posNoise = 10, negNoise = 9
17-03-17 22:26:37.288 -07 000000482 INF: Z Motor: After move to -0.139149, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:26:37.288 -07 000000482 INF: Z Motor: Settle wait time = 1449 ms, measure time = 102 ms (allowed 150 ms), total time = 1551 ms
17-03-17 22:26:37.288 -07 000000482 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 22:26:37.338 -07 000000482 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1604 ms
17-03-17 22:26:37.338 -07 000000482 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:26:37.338 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:26:37.338 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:26:37.338 -07 000000482 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:26:37.338 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:26:37.338 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:26:37.338 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:26:37.338 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:26:37.338 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:26:37.348 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:26:37.348 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:26:37.358 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 22:26:37.358 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-17 22:26:37.358 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:26:37.408 -07 000000626 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:26:37.598 -07 000000626 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:26:37.598 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:26:37.608 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:26:37.608 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 22:26:37.638 -07 000000626 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:26:37.638 -07 000000482 INF: FPGA: Recv CAMSNAP
17-03-17 22:26:37.648 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 285 ms overall
17-03-17 22:26:37.738 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 22:26:37.738 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:26:37.738 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:26:37.738 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 22:26:37.748 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:26:37.748 -07 000000482 INF: Autofocus start
17-03-17 22:26:37.748 -07 000000482 INF: MeasureProfile start
17-03-17 22:26:37.748 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:26:37.758 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:26:37.758 -07 000000626 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:26:37.758 -07 000000482 INF: MeasureProfile done
17-03-17 22:26:37.758 -07 000000482 INF: X=0  Z correction [um]=-0.02394831
17-03-17 22:26:37.758 -07 000000482 INF: Autofocus finished
17-03-17 22:26:37.958 -07 000000512 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:26:37.958 -07 000000626 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:26:37.968 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.22412109375, Z-position -0.13916556622292. ----------
17-03-17 22:26:37.968 -07 000000610 INF: Cycle	63	Tile	5	Exposure Settings		A	452	G	217	T	217	C	452
17-03-17 22:26:37.968 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28904, sync = True, waitForSettling = True)
17-03-17 22:26:37.968 -07 000000610 INF: Z Motor: Moving to -0.132314 mm, started at -0.139166 mm, distance = 6.85 um
17-03-17 22:26:37.968 -07 000000610 INF: FPGA: Xmit ZDACW 28904\n [Z Motor]
17-03-17 22:26:37.968 -07 000000626 INF: FPGA: Recv ZDACW
17-03-17 22:26:37.978 -07 000000610 INF: FPGA: 'ZDACW 28904' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:26:37.978 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:26:37.978 -07 000000512 INF: FPGA: Recv ZDACR 28904
17-03-17 22:26:37.988 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:37.988 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:26:38.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:38.138 -07 000000626 INF: FPGA: Recv ZSGSRD 29885
17-03-17 22:26:38.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:38.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:38.148 -07 000000482 INF: FPGA: Recv ZSGSRD 29887
17-03-17 22:26:38.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:38.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:38.158 -07 000000626 INF: FPGA: Recv ZSGSRD 29889
17-03-17 22:26:38.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:38.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:38.168 -07 000000482 INF: FPGA: Recv ZSGSRD 29882
17-03-17 22:26:38.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:38.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:38.178 -07 000000626 INF: FPGA: Recv ZSGSRD 29881
17-03-17 22:26:38.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:38.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:38.188 -07 000000482 INF: FPGA: Recv ZSGSRD 29894
17-03-17 22:26:38.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:38.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:38.198 -07 000000626 INF: FPGA: Recv ZSGSRD 29889
17-03-17 22:26:38.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:38.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:38.208 -07 000000569 INF: FPGA: Recv ZSGSRD 29881
17-03-17 22:26:38.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:38.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:38.218 -07 000000626 INF: FPGA: Recv ZSGSRD 29885
17-03-17 22:26:38.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:38.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:38.228 -07 000000512 INF: FPGA: Recv ZSGSRD 29885
17-03-17 22:26:38.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:38.238 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:26:38.238 -07 000000512 INF: FPGA: Recv ZPIEZORD 25579
17-03-17 22:26:38.248 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:38.248 -07 000000610 INF: Z Motor: Piezo is near 34.6 V (nominally 0 to 100 V), expect near 44.1 V, since DAC is at 4.410 V. Piezo Error = -9.5 V.
17-03-17 22:26:38.248 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.3 um, Read 10 ADC samples: Avg = 29886 (-131.5 uncal um), Error = 0.8 uncal um, Median = 29885 (-131.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29881 (-131.5 uncal um), Max = 29894 (-131.6 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 22:26:38.248 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29886, posNoise = 8, negNoise = 5
17-03-17 22:26:38.248 -07 000000610 INF: Z Motor: After move to -0.132314, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:26:38.248 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 22:26:38.248 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:26:38.248 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:26:38.248 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:26:38.248 -07 000000547 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:26:38.248 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:26:38.248 -07 000000482 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:26:38.248 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:26:38.248 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:26:38.248 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:26:38.248 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:26:38.248 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:26:38.248 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:26:38.258 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:26:38.258 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:26:38.258 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:26:38.258 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:26:38.268 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 22:26:38.268 -07 000000547 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 22:26:38.268 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 22:26:38.268 -07 000000482 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 22:26:38.268 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 452 452 217 217 29081 150\n [Camera]
17-03-17 22:26:38.468 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:26:38.918 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 644
17-03-17 22:26:38.918 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 644
17-03-17 22:26:38.918 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:26:38.918 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:26:38.918 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-17 22:26:38.928 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 644
17-03-17 22:26:38.928 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 644
17-03-17 22:26:38.928 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:26:39.038 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:26:39.038 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 22:26:39.118 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29081 837
17-03-17 22:26:39.258 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning grn on 987
17-03-17 22:26:39.298 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 22:26:39.298 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 22:26:39.298 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:26:39.308 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:26:39.308 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 22:26:39.418 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 373 ms.
17-03-17 22:26:39.418 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-17 22:26:39.418 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:26:39.418 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:26:39.428 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 498 ms.
17-03-17 22:26:39.478 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1204
17-03-17 22:26:39.478 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1204
17-03-17 22:26:39.478 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:26:39.488 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1204
17-03-17 22:26:39.488 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1204
17-03-17 22:26:39.488 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:26:39.488 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:26:39.488 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:26:39.488 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 22:26:39.488 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 22:26:39.668 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP 1397
17-03-17 22:26:39.668 -07 000000476 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:26:39.668 -07 000000610 INF: FPGA: 'CAMDBLSNAP 452 452 217 217 29081 150' command took 2 ms to send, 1399 ms to get response, and 1404 ms overall
17-03-17 22:26:39.678 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 22:26:39.678 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.22412109375, Z-Position -0.132317356079803. ------
17-03-17 22:26:39.678 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:26:39.678 -07 000000382 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.13882 mm
17-03-17 22:26:39.678 -07 000000382 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:26:39.678 -07 000000547 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:26:39.678 -07 000000476 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-17 22:26:39.678 -07 000000476 INF: Y Motor: Moving to 64.0626 mm, started at 63.2241 mm, delta = 0.8385 mm
17-03-17 22:26:39.678 -07 000000475 INF: Z Motor: Entering MoveAbsStepped (DAC = 30324, sync = True, waitForSettling = False)
17-03-17 22:26:39.678 -07 000000475 INF: Z Motor: Moving to -0.138814 mm, started at -0.132317 mm, distance = -6.50 um
17-03-17 22:26:39.688 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 22:26:39.688 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:26:39.688 -07 000000512 INF: FPGA: Recv YRDPOS 129484
17-03-17 22:26:39.698 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:26:39.698 -07 000000476 INF: Y Motor: Encoder = 129484 = motor step 101159.4 = 63.2246 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:26:39.698 -07 000000475 INF: FPGA: Xmit ZDACW 30324\n [Z Motor]
17-03-17 22:26:39.698 -07 000000424 INF: FPGA: Recv ZDACW
17-03-17 22:26:39.698 -07 000000476 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:26:39.698 -07 000000476 INF: Y Motor: Moving 1341 steps-17
17-03-17 22:26:39.708 -07 000000569 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:26:39.708 -07 000000475 INF: FPGA: 'ZDACW 30324' command took 0 ms to send, 0 ms to get response, and 20 ms overall
17-03-17 22:26:39.718 -07 000000476 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:26:39.728 -07 000000475 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:26:39.728 -07 000000576 INF: FPGA: Recv ZDACR 30324
17-03-17 22:26:39.738 -07 000000475 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:26:39.738 -07 000000475 INF: Z Motor: MoveAbsStepped took 50 ms (did NOT wait for settling yet))
17-03-17 22:26:39.868 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 377 ms.
17-03-17 22:26:39.868 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-17 22:26:39.868 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:26:39.878 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:26:39.878 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 382 ms.
17-03-17 22:26:39.878 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 22:26:39.878 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:26:39.878 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:26:39.878 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 22:26:39.878 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 22:26:39.908 -07 000000012 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:26:39.908 -07 000000569 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 22:26:40.088 -07 000000569 INF: FPGA: Recv YMVTILE
17-03-17 22:26:40.088 -07 000000476 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-17 22:26:40.128 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:26:40.138 -07 000000501 INF: FPGA: Recv YRDPOS 131188
17-03-17 22:26:40.138 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 5 ms overall
17-03-17 22:26:40.138 -07 000000476 INF: Y Motor: Encoder = 131188 = motor step 102490.6 = 64.0566 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:26:40.138 -07 000000476 INF: Y Motor: Position error before settling (table move) = -12 encoder counts (-0.006 mm)
17-03-17 22:26:40.138 -07 000000476 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.838 mm, average velocity = 2.128 mm/sec
17-03-17 22:26:40.488 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 63, FrontChillerTemperature: 3.997626,
17-03-17 22:26:41.088 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:26:41.088 -07 000000512 INF: FPGA: Recv YRDPOS 131189
17-03-17 22:26:41.098 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:41.098 -07 000000476 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:26:41.118 -07 000000476 INF: Y Motor: After move to 64.062607, error = -0.005478, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:26:41.118 -07 000000476 INF: Y Motor: Position error after settling (table move) = -11 encoder counts (-0.005 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 22:26:41.118 -07 000000476 INF: Y Motor: Moved to 64.0571 after 1432 ms (table move)
17-03-17 22:26:41.118 -07 000000382 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138814 mm (DAC = 30324)
17-03-17 22:26:41.118 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:41.118 -07 000000012 INF: FPGA: Recv ZSGSRD 30895
17-03-17 22:26:41.128 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:26:41.128 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:41.128 -07 000000627 INF: FPGA: Recv ZSGSRD 30893
17-03-17 22:26:41.138 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:41.138 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:41.138 -07 000000512 INF: FPGA: Recv ZSGSRD 30896
17-03-17 22:26:41.148 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:41.148 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:41.148 -07 000000482 INF: FPGA: Recv ZSGSRD 30906
17-03-17 22:26:41.158 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:41.158 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:41.158 -07 000000512 INF: FPGA: Recv ZSGSRD 30906
17-03-17 22:26:41.168 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:41.168 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:41.168 -07 000000459 INF: FPGA: Recv ZSGSRD 30898
17-03-17 22:26:41.178 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:41.178 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:41.178 -07 000000512 INF: FPGA: Recv ZSGSRD 30894
17-03-17 22:26:41.188 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:41.188 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:41.188 -07 000000512 INF: FPGA: Recv ZSGSRD 30900
17-03-17 22:26:41.198 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:41.198 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:41.198 -07 000000459 INF: FPGA: Recv ZSGSRD 30890
17-03-17 22:26:41.208 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:41.208 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:41.208 -07 000000459 INF: FPGA: Recv ZSGSRD 30894
17-03-17 22:26:41.218 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:41.218 -07 000000382 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:26:41.218 -07 000000459 INF: FPGA: Recv ZPIEZORD 26885
17-03-17 22:26:41.228 -07 000000382 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:41.228 -07 000000382 INF: Z Motor: Piezo is near 37.4 V (nominally 0 to 100 V), expect near 46.3 V, since DAC is at 4.627 V. Piezo Error = -8.8 V.
17-03-17 22:26:41.228 -07 000000382 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.8 um, Read 10 ADC samples: Avg = 30897 (-138.0 uncal um), Error = 0.8 uncal um, Median = 30896 (-138.0 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 30890 (-138.0 uncal um), Max = 30906 (-138.1 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 22:26:41.228 -07 000000382 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30897, posNoise = 9, negNoise = 7
17-03-17 22:26:41.228 -07 000000382 INF: Z Motor: After move to -0.138814, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:26:41.228 -07 000000382 INF: Z Motor: Settle wait time = 1436 ms, measure time = 105 ms (allowed 150 ms), total time = 1541 ms
17-03-17 22:26:41.228 -07 000000382 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 22:26:41.278 -07 000000382 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1595 ms
17-03-17 22:26:41.278 -07 000000382 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:26:41.278 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:26:41.278 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:26:41.278 -07 000000459 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:26:41.278 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:26:41.278 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:26:41.278 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:26:41.278 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:26:41.278 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:26:41.288 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:26:41.288 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:26:41.298 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 22:26:41.298 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-17 22:26:41.298 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:26:41.338 -07 000000459 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:26:41.538 -07 000000012 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:26:41.538 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:26:41.548 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:26:41.548 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 22:26:41.578 -07 000000459 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:26:41.578 -07 000000512 INF: FPGA: Recv CAMSNAP
17-03-17 22:26:41.578 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 284 ms overall
17-03-17 22:26:41.658 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 22:26:41.658 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:26:41.658 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:26:41.658 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 22:26:41.678 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:26:41.678 -07 000000459 INF: Autofocus start
17-03-17 22:26:41.678 -07 000000459 INF: MeasureProfile start
17-03-17 22:26:41.678 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:26:41.688 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 22:26:41.688 -07 000000382 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:26:41.688 -07 000000459 INF: MeasureProfile done
17-03-17 22:26:41.688 -07 000000459 INF: X=-16  Z correction [um]=-0.08128808
17-03-17 22:26:41.688 -07 000000459 INF: Autofocus finished
17-03-17 22:26:41.888 -07 000000459 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:26:41.888 -07 000000382 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:26:41.888 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.05712890625, Z-position -0.138812234555123. ----------
17-03-17 22:26:41.888 -07 000000610 INF: Cycle	63	Tile	6	Exposure Settings		A	452	G	217	T	217	C	452
17-03-17 22:26:41.898 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28819, sync = True, waitForSettling = True)
17-03-17 22:26:41.898 -07 000000610 INF: Z Motor: Moving to -0.131925 mm, started at -0.138812 mm, distance = 6.89 um
17-03-17 22:26:41.898 -07 000000610 INF: FPGA: Xmit ZDACW 28819\n [Z Motor]
17-03-17 22:26:41.898 -07 000000512 INF: FPGA: Recv ZDACW
17-03-17 22:26:41.908 -07 000000610 INF: FPGA: 'ZDACW 28819' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:26:41.908 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:26:41.908 -07 000000012 INF: FPGA: Recv ZDACR 28819
17-03-17 22:26:41.918 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:41.918 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:26:41.968 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:26:41.968 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 62. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=994, R2=1021, Total=2015. Warn if over 250 bubbles per interval.
17-03-17 22:26:42.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:42.068 -07 000000459 INF: FPGA: Recv ZSGSRD 29824
17-03-17 22:26:42.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:26:42.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:42.078 -07 000000382 INF: FPGA: Recv ZSGSRD 29828
17-03-17 22:26:42.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:42.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:42.088 -07 000000012 INF: FPGA: Recv ZSGSRD 29821
17-03-17 22:26:42.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:42.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:42.098 -07 000000512 INF: FPGA: Recv ZSGSRD 29825
17-03-17 22:26:42.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:42.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:42.108 -07 000000459 INF: FPGA: Recv ZSGSRD 29828
17-03-17 22:26:42.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:42.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:42.118 -07 000000012 INF: FPGA: Recv ZSGSRD 29826
17-03-17 22:26:42.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:42.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:42.128 -07 000000382 INF: FPGA: Recv ZSGSRD 29825
17-03-17 22:26:42.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:42.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:42.138 -07 000000459 INF: FPGA: Recv ZSGSRD 29825
17-03-17 22:26:42.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:42.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:42.148 -07 000000459 INF: FPGA: Recv ZSGSRD 29825
17-03-17 22:26:42.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:42.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:42.158 -07 000000512 INF: FPGA: Recv ZSGSRD 29827
17-03-17 22:26:42.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:42.168 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:26:42.168 -07 000000382 INF: FPGA: Recv ZPIEZORD 25493
17-03-17 22:26:42.178 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:42.178 -07 000000610 INF: Z Motor: Piezo is near 34.5 V (nominally 0 to 100 V), expect near 44.0 V, since DAC is at 4.397 V. Piezo Error = -9.5 V.
17-03-17 22:26:42.178 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.9 um, Read 10 ADC samples: Avg = 29825 (-131.1 uncal um), Error = 0.8 uncal um, Median = 29825 (-131.1 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 29821 (-131.1 uncal um), Max = 29828 (-131.2 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 22:26:42.178 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29825, posNoise = 3, negNoise = 4
17-03-17 22:26:42.178 -07 000000610 INF: Z Motor: After move to -0.131925, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:26:42.178 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 22:26:42.178 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:26:42.178 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:26:42.178 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:26:42.178 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:26:42.178 -07 000000459 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:26:42.178 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:26:42.178 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:26:42.178 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:26:42.178 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:26:42.178 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:26:42.178 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:26:42.178 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:26:42.188 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 22:26:42.188 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:26:42.188 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 22:26:42.188 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:26:42.198 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 22:26:42.198 -07 000000459 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 22:26:42.198 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 22:26:42.198 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 22:26:42.198 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 452 452 217 217 28996 150\n [Camera]
17-03-17 22:26:42.398 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:26:42.848 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 644
17-03-17 22:26:42.848 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 644
17-03-17 22:26:42.848 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:26:42.848 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 644
17-03-17 22:26:42.848 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 644
17-03-17 22:26:42.858 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:26:42.858 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:26:42.858 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-17 22:26:42.858 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:26:42.858 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 22:26:43.038 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28996 837
17-03-17 22:26:43.188 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning grn on 987
17-03-17 22:26:43.228 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 372 ms.
17-03-17 22:26:43.228 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-17 22:26:43.228 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:26:43.228 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:26:43.238 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 373 ms.
17-03-17 22:26:43.238 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 374 ms.
17-03-17 22:26:43.238 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:26:43.238 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:26:43.238 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 22:26:43.238 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 22:26:43.408 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1204
17-03-17 22:26:43.408 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1204
17-03-17 22:26:43.408 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:26:43.518 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1204
17-03-17 22:26:43.518 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1204
17-03-17 22:26:43.528 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:26:43.528 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-17 22:26:43.528 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:26:43.528 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:26:43.528 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 22:26:43.598 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP 1397
17-03-17 22:26:43.598 -07 000000382 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:26:43.598 -07 000000610 INF: FPGA: 'CAMDBLSNAP 452 452 217 217 28996 150' command took 2 ms to send, 1398 ms to get response, and 1404 ms overall
17-03-17 22:26:43.608 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 22:26:43.608 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.05712890625, Z-Position -0.131925479139156. ------
17-03-17 22:26:43.608 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:26:43.608 -07 000000501 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.13846 mm
17-03-17 22:26:43.608 -07 000000501 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:26:43.608 -07 000000459 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-17 22:26:43.608 -07 000000459 INF: Y Motor: Moving to 64.8926 mm, started at 64.0571 mm, delta = 0.8355 mm
17-03-17 22:26:43.608 -07 000000382 INF: Z Motor: Entering MoveAbsStepped (DAC = 30247, sync = True, waitForSettling = False)
17-03-17 22:26:43.608 -07 000000382 INF: Z Motor: Moving to -0.138462 mm, started at -0.131925 mm, distance = -6.54 um
17-03-17 22:26:43.608 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:26:43.618 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 22:26:43.618 -07 000000382 INF: FPGA: Xmit ZDACW 30247\n [Z Motor]
17-03-17 22:26:43.618 -07 000000626 INF: FPGA: Recv ZDACW
17-03-17 22:26:43.628 -07 000000382 INF: FPGA: 'ZDACW 30247' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 22:26:43.628 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:26:43.628 -07 000000626 INF: FPGA: Recv YRDPOS 131189
17-03-17 22:26:43.638 -07 000000431 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:26:43.638 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-17 22:26:43.638 -07 000000459 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:26:43.638 -07 000000459 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:26:43.638 -07 000000459 INF: Y Motor: Moving 1337 steps-12
17-03-17 22:26:43.648 -07 000000382 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:26:43.648 -07 000000626 INF: FPGA: Recv ZDACR 30247
17-03-17 22:26:43.658 -07 000000382 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:26:43.658 -07 000000459 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:26:43.658 -07 000000382 INF: Z Motor: MoveAbsStepped took 42 ms (did NOT wait for settling yet))
17-03-17 22:26:43.838 -07 000000382 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:26:43.838 -07 000000431 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 22:26:43.908 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 380 ms.
17-03-17 22:26:43.908 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-17 22:26:43.908 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:26:43.908 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:26:43.918 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 393 ms.
17-03-17 22:26:43.918 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 22:26:43.918 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:26:43.918 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 22:26:43.918 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:26:43.918 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 511 ms.
17-03-17 22:26:44.038 -07 000000438 INF: FPGA: Recv YMVTILE
17-03-17 22:26:44.038 -07 000000459 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 398 ms overall
17-03-17 22:26:44.068 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:26:44.078 -07 000000626 INF: FPGA: Recv YRDPOS 132872
17-03-17 22:26:44.078 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 22:26:44.078 -07 000000459 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:26:44.078 -07 000000459 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 22:26:44.078 -07 000000459 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.835 mm, average velocity = 2.099 mm/sec
17-03-17 22:26:45.028 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:26:45.028 -07 000000431 INF: FPGA: Recv YRDPOS 132872
17-03-17 22:26:45.038 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:45.038 -07 000000459 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:26:45.068 -07 000000459 INF: Y Motor: After move to 64.892609, error = -0.013702, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:26:45.068 -07 000000459 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:26:45.068 -07 000000459 INF: Y Motor: Moved to 64.8789 after 1460 ms (table move)
17-03-17 22:26:45.078 -07 000000501 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138462 mm (DAC = 30247)
17-03-17 22:26:45.078 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:45.078 -07 000000626 INF: FPGA: Recv ZSGSRD 30850
17-03-17 22:26:45.088 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:26:45.088 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:45.088 -07 000000424 INF: FPGA: Recv ZSGSRD 30844
17-03-17 22:26:45.098 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:45.098 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:45.098 -07 000000459 INF: FPGA: Recv ZSGSRD 30846
17-03-17 22:26:45.108 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:45.108 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:45.108 -07 000000475 INF: FPGA: Recv ZSGSRD 30840
17-03-17 22:26:45.118 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:45.118 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:45.118 -07 000000576 INF: FPGA: Recv ZSGSRD 30836
17-03-17 22:26:45.128 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:45.128 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:45.128 -07 000000424 INF: FPGA: Recv ZSGSRD 30838
17-03-17 22:26:45.138 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:45.138 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:45.138 -07 000000424 INF: FPGA: Recv ZSGSRD 30847
17-03-17 22:26:45.148 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:45.148 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:45.148 -07 000000424 INF: FPGA: Recv ZSGSRD 30843
17-03-17 22:26:45.158 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:45.158 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:45.158 -07 000000512 INF: FPGA: Recv ZSGSRD 30845
17-03-17 22:26:45.168 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:45.168 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:45.168 -07 000000512 INF: FPGA: Recv ZSGSRD 30851
17-03-17 22:26:45.178 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:45.178 -07 000000501 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:26:45.178 -07 000000512 INF: FPGA: Recv ZPIEZORD 26843
17-03-17 22:26:45.188 -07 000000501 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:45.188 -07 000000501 INF: Z Motor: Piezo is near 37.3 V (nominally 0 to 100 V), expect near 46.2 V, since DAC is at 4.615 V. Piezo Error = -8.8 V.
17-03-17 22:26:45.188 -07 000000501 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.5 um, Read 10 ADC samples: Avg = 30844 (-137.7 uncal um), Error = 0.8 uncal um, Median = 30844 (-137.7 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30836 (-137.6 uncal um), Max = 30851 (-137.7 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 22:26:45.188 -07 000000501 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30844, posNoise = 7, negNoise = 8
17-03-17 22:26:45.188 -07 000000501 INF: Z Motor: After move to -0.138462, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:26:45.188 -07 000000501 INF: Z Motor: Settle wait time = 1465 ms, measure time = 109 ms (allowed 150 ms), total time = 1574 ms
17-03-17 22:26:45.188 -07 000000501 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-17 22:26:45.238 -07 000000501 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1625 ms
17-03-17 22:26:45.238 -07 000000501 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:26:45.238 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:26:45.238 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:26:45.238 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:26:45.238 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:26:45.238 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:26:45.238 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:26:45.238 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 22:26:45.238 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:26:45.248 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:26:45.248 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:26:45.248 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 22:26:45.248 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 22:26:45.258 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:26:45.308 -07 000000512 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:26:45.508 -07 000000424 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:26:45.508 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:26:45.508 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:26:45.508 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1424593000, 0x0, 559484976) start.
17-03-17 22:26:45.538 -07 000000569 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:26:45.548 -07 000000512 INF: FPGA: Recv CAMSNAP
17-03-17 22:26:45.548 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 288 ms overall
17-03-17 22:26:45.618 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1424593000, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 22:26:45.618 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:26:45.618 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:26:45.618 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 22:26:45.648 -07 000000475 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:26:45.648 -07 000000431 INF: Autofocus start
17-03-17 22:26:45.648 -07 000000431 INF: MeasureProfile start
17-03-17 22:26:45.648 -07 000000459 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:26:45.658 -07 000000475 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:26:45.658 -07 000000475 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:26:45.668 -07 000000431 INF: MeasureProfile done
17-03-17 22:26:45.668 -07 000000431 INF: X=-48  Z correction [um]=-0.2370583
17-03-17 22:26:45.668 -07 000000431 INF: Autofocus finished
17-03-17 22:26:45.858 -07 000000459 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 63, FrontChillerTemperature: 4.016692,
17-03-17 22:26:45.868 -07 000000626 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:26:45.868 -07 000000475 INF: FPGA: 'FOCMRRIMG' command took 2 ms to send, 201 ms to get response, and 210 ms overall
17-03-17 22:26:45.868 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87890625, Z-position -0.13847175131161. ----------
17-03-17 22:26:45.868 -07 000000610 INF: Cycle	63	Tile	7	Exposure Settings		A	452	G	217	T	217	C	452
17-03-17 22:26:45.868 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28708, sync = True, waitForSettling = True)
17-03-17 22:26:45.868 -07 000000610 INF: Z Motor: Moving to -0.131417 mm, started at -0.138472 mm, distance = 7.05 um
17-03-17 22:26:45.888 -07 000000610 INF: FPGA: Xmit ZDACW 28708\n [Z Motor]
17-03-17 22:26:45.888 -07 000000626 INF: FPGA: Recv ZDACW
17-03-17 22:26:45.898 -07 000000610 INF: FPGA: 'ZDACW 28708' command took 1 ms to send, 0 ms to get response, and 21 ms overall
17-03-17 22:26:45.918 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:26:45.918 -07 000000626 INF: FPGA: Recv ZDACR 28708
17-03-17 22:26:45.928 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:26:45.928 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:26:46.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:46.078 -07 000000475 INF: FPGA: Recv ZSGSRD 29747
17-03-17 22:26:46.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:26:46.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:46.088 -07 000000626 INF: FPGA: Recv ZSGSRD 29746
17-03-17 22:26:46.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:46.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:46.098 -07 000000475 INF: FPGA: Recv ZSGSRD 29748
17-03-17 22:26:46.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:46.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:46.108 -07 000000501 INF: FPGA: Recv ZSGSRD 29747
17-03-17 22:26:46.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:46.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:46.118 -07 000000626 INF: FPGA: Recv ZSGSRD 29754
17-03-17 22:26:46.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:46.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:46.128 -07 000000626 INF: FPGA: Recv ZSGSRD 29750
17-03-17 22:26:46.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:46.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:46.138 -07 000000626 INF: FPGA: Recv ZSGSRD 29739
17-03-17 22:26:46.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:46.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:46.148 -07 000000501 INF: FPGA: Recv ZSGSRD 29742
17-03-17 22:26:46.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:46.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:46.158 -07 000000626 INF: FPGA: Recv ZSGSRD 29742
17-03-17 22:26:46.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:46.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:46.178 -07 000000475 INF: FPGA: Recv ZSGSRD 29748
17-03-17 22:26:46.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:26:46.198 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:26:46.198 -07 000000501 INF: FPGA: Recv ZPIEZORD 25383
17-03-17 22:26:46.208 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:26:46.208 -07 000000610 INF: Z Motor: Piezo is near 34.2 V (nominally 0 to 100 V), expect near 43.8 V, since DAC is at 4.381 V. Piezo Error = -9.6 V.
17-03-17 22:26:46.208 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.4 um, Read 10 ADC samples: Avg = 29746 (-130.6 uncal um), Error = 0.8 uncal um, Median = 29747 (-130.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 29739 (-130.6 uncal um), Max = 29754 (-130.7 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 22:26:46.208 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29746, posNoise = 8, negNoise = 7
17-03-17 22:26:46.208 -07 000000610 INF: Z Motor: After move to -0.131417, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:26:46.208 -07 000000610 INF: Z Motor: MoveAbsStepped took 332 ms)
17-03-17 22:26:46.208 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:26:46.208 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:26:46.208 -07 000000475 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:26:46.208 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:26:46.208 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:26:46.208 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:26:46.208 -07 000000475 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:26:46.208 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:26:46.218 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:26:46.218 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:26:46.218 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 4 ms.
17-03-17 22:26:46.218 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:26:46.218 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:26:46.218 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:26:46.218 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:26:46.218 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:26:46.228 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 22:26:46.228 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 22:26:46.228 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 22:26:46.228 -07 000000475 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 18 ms.
17-03-17 22:26:46.238 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 452 452 217 217 28884 150\n [Camera]
17-03-17 22:26:46.438 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:26:46.888 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 644
17-03-17 22:26:46.888 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 644
17-03-17 22:26:46.888 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:26:46.888 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:26:46.888 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start.
17-03-17 22:26:46.888 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 644
17-03-17 22:26:46.888 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 644
17-03-17 22:26:46.888 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:26:46.888 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:26:46.888 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) start.
17-03-17 22:26:46.968 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:26:46.968 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 62. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=994, R2=1021, Total=2015. Warn if over 250 bubbles per interval.
17-03-17 22:26:47.078 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28884 837
17-03-17 22:26:47.228 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP turning grn on 987
17-03-17 22:26:47.288 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) end. Duration was 394 ms.
17-03-17 22:26:47.288 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 22:26:47.288 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 397 ms.
17-03-17 22:26:47.288 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 22:26:47.288 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:26:47.288 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:26:47.288 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:26:47.288 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 22:26:47.288 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 22:26:47.298 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-17 22:26:47.448 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1204
17-03-17 22:26:47.448 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1204
17-03-17 22:26:47.448 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:26:47.558 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1204
17-03-17 22:26:47.558 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1204
17-03-17 22:26:47.558 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:26:47.558 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 22:26:47.558 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:26:47.558 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:26:47.558 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 22:26:47.638 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP 1397
17-03-17 22:26:47.638 -07 000000476 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:26:47.638 -07 000000610 INF: FPGA: 'CAMDBLSNAP 452 452 217 217 28884 150' command took 2 ms to send, 1394 ms to get response, and 1406 ms overall
17-03-17 22:26:47.638 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 22:26:47.638 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.87890625, Z-Position -0.131417966379956. ------
17-03-17 22:26:47.638 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:26:47.638 -07 000000012 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.13768 mm
17-03-17 22:26:47.638 -07 000000012 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:26:47.648 -07 000000431 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:26:47.648 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 22:26:47.648 -07 000000482 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-17 22:26:47.648 -07 000000482 INF: Y Motor: Moving to 65.7226 mm, started at 64.8789 mm, delta = 0.8437 mm
17-03-17 22:26:47.648 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:26:47.648 -07 000000476 INF: Z Motor: Entering MoveAbsStepped (DAC = 30077, sync = True, waitForSettling = False)
17-03-17 22:26:47.648 -07 000000476 INF: Z Motor: Moving to -0.137684 mm, started at -0.131418 mm, distance = -6.27 um
17-03-17 22:26:47.648 -07 000000431 INF: FPGA: Recv YRDPOS 132872
17-03-17 22:26:47.658 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:26:47.658 -07 000000482 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:26:47.658 -07 000000482 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:26:47.658 -07 000000482 INF: Y Motor: Moving 1350 steps-28
17-03-17 22:26:47.658 -07 000000569 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:26:47.668 -07 000000476 INF: FPGA: Xmit ZDACW 30077\n [Z Motor]
17-03-17 22:26:47.668 -07 000000431 INF: FPGA: Recv ZDACW
17-03-17 22:26:47.678 -07 000000476 INF: FPGA: 'ZDACW 30077' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 22:26:47.678 -07 000000482 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:26:47.688 -07 000000476 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:26:47.688 -07 000000512 INF: FPGA: Recv ZDACR 30077
17-03-17 22:26:47.698 -07 000000476 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 22:26:47.698 -07 000000476 INF: Z Motor: MoveAbsStepped took 46 ms (did NOT wait for settling yet))
17-03-17 22:26:47.858 -07 000000438 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:26:47.858 -07 000000569 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 193 ms to get response, and 211 ms overall
17-03-17 22:26:47.958 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 397 ms.
17-03-17 22:26:47.958 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 22:26:47.958 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:26:47.958 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 402 ms.
17-03-17 22:26:47.958 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 22:26:47.958 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:26:47.958 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:26:47.968 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:26:47.968 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 517 ms.
17-03-17 22:26:47.968 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-17 22:26:48.058 -07 000000626 INF: FPGA: Recv YMVTILE
17-03-17 22:26:48.058 -07 000000482 INF: FPGA: 'YMVTILE 1327' command took 3 ms to send, 371 ms to get response, and 400 ms overall
17-03-17 22:26:48.098 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:26:48.098 -07 000000476 INF: FPGA: Recv YRDPOS 134582
17-03-17 22:26:48.108 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:48.108 -07 000000482 INF: Y Motor: Encoder = 134582 = motor step 105142.2 = 65.7139 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:26:48.108 -07 000000482 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-17 22:26:48.108 -07 000000482 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 400 ms, distance = 0.844 mm, average velocity = 2.109 mm/sec
17-03-17 22:26:49.058 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:26:49.058 -07 000000501 INF: FPGA: Recv YRDPOS 134583
17-03-17 22:26:49.068 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:26:49.068 -07 000000482 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:26:49.088 -07 000000482 INF: Y Motor: After move to 65.722610, error = -0.008255, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:26:49.088 -07 000000482 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 22:26:49.088 -07 000000482 INF: Y Motor: Moved to 65.7144 after 1444 ms (table move)
17-03-17 22:26:49.098 -07 000000012 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137684 mm (DAC = 30077)
17-03-17 22:26:49.098 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:49.098 -07 000000482 INF: FPGA: Recv ZSGSRD 30723
17-03-17 22:26:49.108 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:49.108 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:49.108 -07 000000627 INF: FPGA: Recv ZSGSRD 30722
17-03-17 22:26:49.118 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:49.118 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:49.118 -07 000000475 INF: FPGA: Recv ZSGSRD 30718
17-03-17 22:26:49.128 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:49.128 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:49.128 -07 000000547 INF: FPGA: Recv ZSGSRD 30717
17-03-17 22:26:49.138 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:26:49.138 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:49.138 -07 000000627 INF: FPGA: Recv ZSGSRD 30728
17-03-17 22:26:49.148 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:49.148 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:49.148 -07 000000431 INF: FPGA: Recv ZSGSRD 30730
17-03-17 22:26:49.158 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:49.158 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:49.158 -07 000000431 INF: FPGA: Recv ZSGSRD 30726
17-03-17 22:26:49.168 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:49.168 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:49.168 -07 000000627 INF: FPGA: Recv ZSGSRD 30724
17-03-17 22:26:49.178 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:49.178 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:49.178 -07 000000627 INF: FPGA: Recv ZSGSRD 30719
17-03-17 22:26:49.188 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:49.188 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:49.188 -07 000000627 INF: FPGA: Recv ZSGSRD 30722
17-03-17 22:26:49.198 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:49.198 -07 000000012 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:26:49.198 -07 000000569 INF: FPGA: Recv ZPIEZORD 26717
17-03-17 22:26:49.208 -07 000000012 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:49.208 -07 000000012 INF: Z Motor: Piezo is near 37.1 V (nominally 0 to 100 V), expect near 45.9 V, since DAC is at 4.589 V. Piezo Error = -8.8 V.
17-03-17 22:26:49.208 -07 000000012 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.7 um, Read 10 ADC samples: Avg = 30723 (-136.9 uncal um), Error = 0.8 uncal um, Median = 30722 (-136.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30717 (-136.9 uncal um), Max = 30730 (-136.9 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 22:26:49.208 -07 000000012 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30723, posNoise = 7, negNoise = 6
17-03-17 22:26:49.208 -07 000000012 INF: Z Motor: After move to -0.137684, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:26:49.208 -07 000000012 INF: Z Motor: Settle wait time = 1447 ms, measure time = 110 ms (allowed 150 ms), total time = 1557 ms
17-03-17 22:26:49.208 -07 000000012 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-17 22:26:49.248 -07 000000012 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1600 ms
17-03-17 22:26:49.248 -07 000000012 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:26:49.248 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:26:49.248 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:26:49.248 -07 000000482 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:26:49.248 -07 000000431 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:26:49.248 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:26:49.248 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:26:49.248 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 22:26:49.248 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:26:49.258 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:26:49.258 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:26:49.268 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 22:26:49.268 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 22:26:49.268 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:26:49.308 -07 000000501 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:26:49.508 -07 000000547 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:26:49.508 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:26:49.518 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:26:49.518 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 22:26:49.548 -07 000000626 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:26:49.548 -07 000000501 INF: FPGA: Recv CAMSNAP
17-03-17 22:26:49.548 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 285 ms overall
17-03-17 22:26:49.638 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 119 ms.
17-03-17 22:26:49.638 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:26:49.638 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:26:49.638 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 122 ms.
17-03-17 22:26:49.648 -07 000000012 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:26:49.648 -07 000000512 INF: Autofocus start
17-03-17 22:26:49.648 -07 000000512 INF: MeasureProfile start
17-03-17 22:26:49.648 -07 000000476 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:26:49.658 -07 000000012 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:26:49.658 -07 000000012 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:26:49.668 -07 000000512 INF: MeasureProfile done
17-03-17 22:26:49.668 -07 000000512 INF: X=56  Z correction [um]=0.2454334
17-03-17 22:26:49.668 -07 000000512 INF: Autofocus finished
17-03-17 22:26:49.858 -07 000000438 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:26:49.858 -07 000000012 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:26:49.858 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.71435546875, Z-position -0.137694421642457. ----------
17-03-17 22:26:49.868 -07 000000610 INF: Cycle	63	Tile	8	Exposure Settings		A	452	G	217	T	217	C	452
17-03-17 22:26:49.868 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28643, sync = True, waitForSettling = True)
17-03-17 22:26:49.868 -07 000000610 INF: Z Motor: Moving to -0.131119 mm, started at -0.137694 mm, distance = 6.58 um
17-03-17 22:26:49.868 -07 000000610 INF: FPGA: Xmit ZDACW 28643\n [Z Motor]
17-03-17 22:26:49.868 -07 000000482 INF: FPGA: Recv ZDACW
17-03-17 22:26:49.878 -07 000000610 INF: FPGA: 'ZDACW 28643' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 22:26:49.878 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:26:49.878 -07 000000475 INF: FPGA: Recv ZDACR 28643
17-03-17 22:26:49.888 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:49.888 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:26:50.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:50.038 -07 000000512 INF: FPGA: Recv ZSGSRD 29698
17-03-17 22:26:50.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:26:50.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:50.048 -07 000000512 INF: FPGA: Recv ZSGSRD 29698
17-03-17 22:26:50.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:50.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:50.058 -07 000000512 INF: FPGA: Recv ZSGSRD 29703
17-03-17 22:26:50.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:50.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:50.068 -07 000000512 INF: FPGA: Recv ZSGSRD 29701
17-03-17 22:26:50.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:50.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:50.078 -07 000000512 INF: FPGA: Recv ZSGSRD 29705
17-03-17 22:26:50.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:50.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:50.088 -07 000000512 INF: FPGA: Recv ZSGSRD 29701
17-03-17 22:26:50.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:50.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:50.098 -07 000000512 INF: FPGA: Recv ZSGSRD 29699
17-03-17 22:26:50.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:50.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:50.108 -07 000000512 INF: FPGA: Recv ZSGSRD 29701
17-03-17 22:26:50.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:50.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:50.118 -07 000000512 INF: FPGA: Recv ZSGSRD 29698
17-03-17 22:26:50.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:50.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:50.128 -07 000000512 INF: FPGA: Recv ZSGSRD 29701
17-03-17 22:26:50.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:50.138 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:26:50.138 -07 000000512 INF: FPGA: Recv ZPIEZORD 25375
17-03-17 22:26:50.148 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:50.148 -07 000000610 INF: Z Motor: Piezo is near 34.2 V (nominally 0 to 100 V), expect near 43.7 V, since DAC is at 4.371 V. Piezo Error = -9.5 V.
17-03-17 22:26:50.148 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.1 um, Read 10 ADC samples: Avg = 29700 (-130.3 uncal um), Error = 0.8 uncal um, Median = 29701 (-130.3 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 29698 (-130.3 uncal um), Max = 29705 (-130.4 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 2 (0.0 uncal um)
17-03-17 22:26:50.148 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29700, posNoise = 5, negNoise = 2
17-03-17 22:26:50.148 -07 000000610 INF: Z Motor: After move to -0.131119, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:26:50.148 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-17 22:26:50.148 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:26:50.148 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:26:50.148 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:26:50.148 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:26:50.158 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:26:50.158 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:26:50.158 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:26:50.158 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:26:50.158 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 22:26:50.158 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:26:50.168 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 22:26:50.168 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 12 ms.
17-03-17 22:26:50.168 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:26:50.168 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:26:50.168 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 22:26:50.168 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:26:50.168 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 22:26:50.168 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:26:50.178 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 22:26:50.178 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 12 ms.
17-03-17 22:26:50.178 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 452 452 217 217 28820 150\n [Camera]
17-03-17 22:26:50.378 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:26:50.838 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 644
17-03-17 22:26:50.838 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 644
17-03-17 22:26:50.838 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:26:50.838 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:26:50.838 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 22:26:51.218 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 373 ms.
17-03-17 22:26:51.218 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-17 22:26:51.218 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:26:51.218 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:26:51.218 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 22:26:51.228 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 644
17-03-17 22:26:51.238 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28820 837
17-03-17 22:26:51.238 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning grn on 987
17-03-17 22:26:51.238 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 644
17-03-17 22:26:51.238 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:26:51.248 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:26:51.248 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1439269080, 0x0, 418435064) start.
17-03-17 22:26:51.618 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1439269080, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 22:26:51.618 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-17 22:26:51.618 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:26:51.618 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 22:26:51.628 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 22:26:51.638 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1204
17-03-17 22:26:51.638 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1204
17-03-17 22:26:51.638 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP 1397
17-03-17 22:26:51.638 -07 000000576 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:26:51.638 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1204
17-03-17 22:26:51.638 -07 000000610 INF: FPGA: 'CAMDBLSNAP 452 452 217 217 28820 150' command took 2 ms to send, 1444 ms to get response, and 1455 ms overall
17-03-17 22:26:51.638 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1204
17-03-17 22:26:51.638 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:26:51.638 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:26:51.638 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:26:51.638 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 22:26:51.638 -07 000000459 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 63, FrontChillerTemperature: 3.989471,
17-03-17 22:26:51.638 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:26:51.638 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-17 22:26:51.738 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 22:26:51.738 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.71435546875, Z-Position -0.131122452621435. ------
17-03-17 22:26:51.738 -07 000000459 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:26:51.738 -07 000000626 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.13750 mm
17-03-17 22:26:51.738 -07 000000626 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:26:51.848 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:26:51.848 -07 000000459 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 109 ms overall
17-03-17 22:26:51.848 -07 000000459 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:26:51.848 -07 000000424 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-17 22:26:51.848 -07 000000424 INF: Y Motor: Moving to 66.5526 mm, started at 65.7144 mm, delta = 0.8382 mm
17-03-17 22:26:51.848 -07 000000569 INF: Z Motor: Entering MoveAbsStepped (DAC = 30036, sync = True, waitForSettling = False)
17-03-17 22:26:51.848 -07 000000569 INF: Z Motor: Moving to -0.137496 mm, started at -0.131122 mm, distance = -6.37 um
17-03-17 22:26:51.858 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:26:51.858 -07 000000576 INF: FPGA: Recv YRDPOS 134583
17-03-17 22:26:51.868 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 22:26:51.868 -07 000000569 INF: FPGA: Xmit ZDACW 30036\n [Z Motor]
17-03-17 22:26:51.868 -07 000000424 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:26:51.868 -07 000000424 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:26:51.868 -07 000000424 INF: Y Motor: Moving 1341 steps-18
17-03-17 22:26:51.868 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 22:26:51.878 -07 000000569 INF: FPGA: 'ZDACW 30036' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-17 22:26:51.878 -07 000000569 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:26:51.878 -07 000000501 INF: FPGA: Recv ZDACR 30036
17-03-17 22:26:51.888 -07 000000424 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:26:51.888 -07 000000569 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:51.888 -07 000000569 INF: Z Motor: MoveAbsStepped took 33 ms (did NOT wait for settling yet))
17-03-17 22:26:51.968 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:26:51.978 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 62. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=994, R2=1021, Total=2015. Warn if over 250 bubbles per interval.
17-03-17 22:26:52.028 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 390 ms.
17-03-17 22:26:52.028 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 22:26:52.028 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:26:52.038 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 392 ms.
17-03-17 22:26:52.038 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 22:26:52.038 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:26:52.038 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:26:52.038 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 22:26:52.038 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 22:26:52.038 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 22:26:52.048 -07 000000438 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:26:52.048 -07 000000459 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 198 ms to get response, and 202 ms overall
17-03-17 22:26:52.268 -07 000000512 INF: FPGA: Recv YMVTILE
17-03-17 22:26:52.268 -07 000000424 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 399 ms overall
17-03-17 22:26:52.298 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:26:52.308 -07 000000576 INF: FPGA: Recv YRDPOS 136272
17-03-17 22:26:52.308 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 22:26:52.308 -07 000000424 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:26:52.308 -07 000000424 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 22:26:52.308 -07 000000424 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 400 ms, distance = 0.838 mm, average velocity = 2.096 mm/sec
17-03-17 22:26:53.258 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:26:53.258 -07 000000501 INF: FPGA: Recv YRDPOS 136273
17-03-17 22:26:53.268 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:26:53.268 -07 000000424 INF: Y Motor: Encoder = 136273 = motor step 106463.3 = 66.5396 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:26:53.288 -07 000000424 INF: Y Motor: After move to 66.552605, error = -0.013054, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:26:53.288 -07 000000424 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 22:26:53.288 -07 000000424 INF: Y Motor: Moved to 66.5396 after 1442 ms (table move)
17-03-17 22:26:53.298 -07 000000626 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137496 mm (DAC = 30036)
17-03-17 22:26:53.298 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:53.298 -07 000000459 INF: FPGA: Recv ZSGSRD 30699
17-03-17 22:26:53.308 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:26:53.308 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:53.308 -07 000000501 INF: FPGA: Recv ZSGSRD 30691
17-03-17 22:26:53.318 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:53.318 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:53.318 -07 000000512 INF: FPGA: Recv ZSGSRD 30697
17-03-17 22:26:53.328 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:53.328 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:53.328 -07 000000501 INF: FPGA: Recv ZSGSRD 30696
17-03-17 22:26:53.338 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:53.338 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:54.298 -07 000000424 INF: FPGA: Recv ZSGSRD 30700
17-03-17 22:26:54.298 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 950 ms to get response, and 960 ms overall
17-03-17 22:26:54.298 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:54.298 -07 000000512 INF: FPGA: Recv ZSGSRD 30693
17-03-17 22:26:54.308 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:54.308 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:54.308 -07 000000576 INF: FPGA: Recv ZSGSRD 30691
17-03-17 22:26:54.318 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:54.318 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:54.318 -07 000000512 INF: FPGA: Recv ZSGSRD 30689
17-03-17 22:26:54.328 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:54.328 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:54.328 -07 000000576 INF: FPGA: Recv ZSGSRD 30691
17-03-17 22:26:54.338 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:54.338 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:54.338 -07 000000459 INF: FPGA: Recv ZSGSRD 30694
17-03-17 22:26:54.348 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:54.348 -07 000000626 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:26:54.348 -07 000000576 INF: FPGA: Recv ZPIEZORD 26731
17-03-17 22:26:54.358 -07 000000626 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:54.358 -07 000000626 INF: Z Motor: Piezo is near 37.1 V (nominally 0 to 100 V), expect near 45.8 V, since DAC is at 4.583 V. Piezo Error = -8.7 V.
17-03-17 22:26:54.358 -07 000000626 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.5 um, Read 10 ADC samples: Avg = 30694 (-136.7 uncal um), Error = 0.8 uncal um, Median = 30694 (-136.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30689 (-136.7 uncal um), Max = 30700 (-136.7 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 22:26:54.358 -07 000000626 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30694, posNoise = 6, negNoise = 5
17-03-17 22:26:54.358 -07 000000626 INF: Z Motor: After move to -0.137496, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:26:54.358 -07 000000626 INF: Z Motor: Settle wait time = 1446 ms, measure time = 1058 ms (allowed 150 ms), total time = 2504 ms
17-03-17 22:26:54.358 -07 000000626 INF: Z Motor: Warning: Actual position measuring time = 1058 ms, longer than max expected time of 150 ms
17-03-17 22:26:54.358 -07 000000626 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2615 ms
17-03-17 22:26:54.358 -07 000000626 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:26:54.358 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:26:54.358 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:26:54.358 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:26:54.358 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:26:54.358 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:26:54.358 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:26:54.358 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 22:26:54.358 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:26:54.368 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:26:54.368 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:26:54.378 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 22:26:54.378 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 22:26:54.378 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:26:54.418 -07 000000576 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:26:54.618 -07 000000459 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:26:54.618 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:26:54.618 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:26:54.618 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 22:26:54.658 -07 000000512 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:26:54.658 -07 000000438 INF: FPGA: Recv CAMSNAP
17-03-17 22:26:54.658 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 284 ms overall
17-03-17 22:26:54.738 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 119 ms.
17-03-17 22:26:54.738 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:26:54.748 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:26:54.748 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 122 ms.
17-03-17 22:26:54.758 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:26:54.758 -07 000000501 INF: Autofocus start
17-03-17 22:26:54.758 -07 000000501 INF: MeasureProfile start
17-03-17 22:26:54.758 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:26:54.768 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:26:54.768 -07 000000576 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:26:54.768 -07 000000501 INF: MeasureProfile done
17-03-17 22:26:54.768 -07 000000501 INF: X=32  Z correction [um]=0.1299841
17-03-17 22:26:54.768 -07 000000501 INF: Autofocus finished
17-03-17 22:26:54.968 -07 000000438 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:26:54.968 -07 000000576 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:26:54.968 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.53955078125, Z-position -0.137508119490346. ----------
17-03-17 22:26:54.968 -07 000000610 INF: Cycle	63	Tile	9	Exposure Settings		A	452	G	217	T	217	C	452
17-03-17 22:26:54.978 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28577, sync = True, waitForSettling = True)
17-03-17 22:26:54.978 -07 000000610 INF: Z Motor: Moving to -0.130817 mm, started at -0.137508 mm, distance = 6.69 um
17-03-17 22:26:54.978 -07 000000610 INF: FPGA: Xmit ZDACW 28577\n [Z Motor]
17-03-17 22:26:54.978 -07 000000626 INF: FPGA: Recv ZDACW
17-03-17 22:26:54.988 -07 000000610 INF: FPGA: 'ZDACW 28577' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:26:54.988 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:26:54.988 -07 000000576 INF: FPGA: Recv ZDACR 28577
17-03-17 22:26:54.998 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:54.998 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:26:55.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:55.148 -07 000000626 INF: FPGA: Recv ZSGSRD 29650
17-03-17 22:26:55.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:26:55.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:55.158 -07 000000459 INF: FPGA: Recv ZSGSRD 29653
17-03-17 22:26:55.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:55.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:55.168 -07 000000438 INF: FPGA: Recv ZSGSRD 29656
17-03-17 22:26:55.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:55.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:55.178 -07 000000576 INF: FPGA: Recv ZSGSRD 29656
17-03-17 22:26:55.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:55.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:55.188 -07 000000512 INF: FPGA: Recv ZSGSRD 29651
17-03-17 22:26:55.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:55.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:55.198 -07 000000626 INF: FPGA: Recv ZSGSRD 29655
17-03-17 22:26:55.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:55.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:55.208 -07 000000512 INF: FPGA: Recv ZSGSRD 29654
17-03-17 22:26:55.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:55.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:55.218 -07 000000576 INF: FPGA: Recv ZSGSRD 29656
17-03-17 22:26:55.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:55.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:55.228 -07 000000512 INF: FPGA: Recv ZSGSRD 29656
17-03-17 22:26:55.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:55.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:55.238 -07 000000501 INF: FPGA: Recv ZSGSRD 29649
17-03-17 22:26:55.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:55.248 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:26:55.248 -07 000000424 INF: FPGA: Recv ZPIEZORD 25321
17-03-17 22:26:55.258 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:55.258 -07 000000610 INF: Z Motor: Piezo is near 34.1 V (nominally 0 to 100 V), expect near 43.6 V, since DAC is at 4.361 V. Piezo Error = -9.5 V.
17-03-17 22:26:55.258 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.8 um, Read 10 ADC samples: Avg = 29654 (-130.0 uncal um), Error = 0.8 uncal um, Median = 29654 (-130.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 29649 (-130.0 uncal um), Max = 29656 (-130.1 uncal um), Pos Noise = 2 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 22:26:55.258 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29654, posNoise = 2, negNoise = 5
17-03-17 22:26:55.258 -07 000000610 INF: Z Motor: After move to -0.130817, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:26:55.258 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 22:26:55.258 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:26:55.258 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:26:55.258 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:26:55.258 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:26:55.258 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:26:55.258 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:26:55.258 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:26:55.258 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:26:55.258 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:26:55.258 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:26:55.258 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:26:55.258 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:26:55.268 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:26:55.268 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:26:55.268 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 22:26:55.268 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:26:55.278 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 22:26:55.278 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 22:26:55.278 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 22:26:55.278 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 22:26:55.278 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 452 452 217 217 28754 150\n [Camera]
17-03-17 22:26:55.478 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:26:55.938 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 644
17-03-17 22:26:55.938 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 644
17-03-17 22:26:55.938 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:26:55.938 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 644
17-03-17 22:26:55.938 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 644
17-03-17 22:26:55.938 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:26:55.938 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:26:55.948 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 22:26:55.948 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:26:55.948 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 22:26:56.128 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28754 837
17-03-17 22:26:56.278 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning grn on 987
17-03-17 22:26:56.348 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 398 ms.
17-03-17 22:26:56.348 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 22:26:56.348 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:26:56.348 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 398 ms.
17-03-17 22:26:56.348 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 22:26:56.348 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:26:56.348 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:26:56.348 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-17 22:26:56.348 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:26:56.358 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-17 22:26:56.498 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1204
17-03-17 22:26:56.498 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1204
17-03-17 22:26:56.498 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:26:56.498 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1204
17-03-17 22:26:56.498 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1204
17-03-17 22:26:56.498 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:26:56.508 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:26:56.508 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-17 22:26:56.508 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:26:56.508 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 22:26:56.688 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP 1397
17-03-17 22:26:56.688 -07 000000438 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:26:56.688 -07 000000610 INF: FPGA: 'CAMDBLSNAP 452 452 217 217 28754 150' command took 2 ms to send, 1393 ms to get response, and 1404 ms overall
17-03-17 22:26:56.688 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 22:26:56.688 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.53955078125, Z-Position -0.130826938862914. ------
17-03-17 22:26:56.688 -07 000000476 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:26:56.688 -07 000000626 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.13754 mm
17-03-17 22:26:56.688 -07 000000626 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:26:56.698 -07 000000547 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:26:56.698 -07 000000476 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:26:56.698 -07 000000476 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:26:56.698 -07 000000547 INF: Z Motor: Entering MoveAbsStepped (DAC = 30046, sync = True, waitForSettling = False)
17-03-17 22:26:56.698 -07 000000547 INF: Z Motor: Moving to -0.137542 mm, started at -0.130827 mm, distance = -6.71 um
17-03-17 22:26:56.698 -07 000000482 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-17 22:26:56.698 -07 000000482 INF: Y Motor: Moving to 67.3826 mm, started at 66.5396 mm, delta = 0.8431 mm
17-03-17 22:26:56.708 -07 000000547 INF: FPGA: Xmit ZDACW 30046\n [Z Motor]
17-03-17 22:26:56.708 -07 000000382 INF: FPGA: Recv ZDACW
17-03-17 22:26:56.718 -07 000000547 INF: FPGA: 'ZDACW 30046' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 22:26:56.718 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:26:56.718 -07 000000382 INF: FPGA: Recv YRDPOS 136273
17-03-17 22:26:56.728 -07 000000547 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:26:56.728 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 22:26:56.728 -07 000000482 INF: Y Motor: Encoder = 136273 = motor step 106463.3 = 66.5396 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:26:56.728 -07 000000482 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:26:56.728 -07 000000482 INF: Y Motor: Moving 1349 steps-28
17-03-17 22:26:56.728 -07 000000382 INF: FPGA: Recv ZDACR 30046
17-03-17 22:26:56.738 -07 000000547 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:26:56.738 -07 000000547 INF: Z Motor: MoveAbsStepped took 36 ms (did NOT wait for settling yet))
17-03-17 22:26:56.738 -07 000000482 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:26:56.898 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 392 ms.
17-03-17 22:26:56.898 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 22:26:56.898 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:26:56.898 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 389 ms.
17-03-17 22:26:56.898 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 22:26:56.898 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:26:56.898 -07 000000459 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:26:56.898 -07 000000476 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 203 ms overall
17-03-17 22:26:56.898 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:26:56.898 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 22:26:56.898 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:26:56.908 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-17 22:26:56.968 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:26:56.978 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 62. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=994, R2=1021, Total=2015. Warn if over 250 bubbles per interval.
17-03-17 22:26:56.998 -07 000000459 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 63, FrontChillerTemperature: 4.007176,
17-03-17 22:26:57.108 -07 000000012 INF: FPGA: Recv YMVTILE
17-03-17 22:26:57.108 -07 000000482 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 388 ms overall
17-03-17 22:26:57.148 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:26:57.158 -07 000000569 INF: FPGA: Recv YRDPOS 137978
17-03-17 22:26:57.158 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 22:26:57.158 -07 000000482 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:26:57.158 -07 000000482 INF: Y Motor: Position error before settling (table move) = -22 encoder counts (-0.011 mm)
17-03-17 22:26:57.158 -07 000000482 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 389 ms, distance = 0.843 mm, average velocity = 2.167 mm/sec
17-03-17 22:26:58.108 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:26:58.108 -07 000000627 INF: FPGA: Recv YRDPOS 137978
17-03-17 22:26:58.118 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:26:58.118 -07 000000482 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:26:58.138 -07 000000482 INF: Y Motor: After move to 67.382607, error = -0.010536, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:26:58.138 -07 000000482 INF: Y Motor: Position error after settling (table move) = -22 encoder counts (-0.011 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:26:58.138 -07 000000482 INF: Y Motor: Moved to 67.3721 after 1442 ms (table move)
17-03-17 22:26:58.138 -07 000000626 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137542 mm (DAC = 30046)
17-03-17 22:26:58.138 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:58.148 -07 000000431 INF: FPGA: Recv ZSGSRD 30704
17-03-17 22:26:58.158 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:26:58.158 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:58.158 -07 000000569 INF: FPGA: Recv ZSGSRD 30708
17-03-17 22:26:58.168 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:58.168 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:58.168 -07 000000501 INF: FPGA: Recv ZSGSRD 30698
17-03-17 22:26:58.178 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:58.178 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:58.178 -07 000000482 INF: FPGA: Recv ZSGSRD 30692
17-03-17 22:26:58.188 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:58.188 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:58.188 -07 000000382 INF: FPGA: Recv ZSGSRD 30703
17-03-17 22:26:58.198 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:58.198 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:58.198 -07 000000576 INF: FPGA: Recv ZSGSRD 30697
17-03-17 22:26:58.208 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:58.208 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:58.208 -07 000000547 INF: FPGA: Recv ZSGSRD 30696
17-03-17 22:26:58.218 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:58.218 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:58.218 -07 000000459 INF: FPGA: Recv ZSGSRD 30703
17-03-17 22:26:58.228 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:58.228 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:58.228 -07 000000382 INF: FPGA: Recv ZSGSRD 30700
17-03-17 22:26:58.238 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:58.238 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:58.238 -07 000000438 INF: FPGA: Recv ZSGSRD 30697
17-03-17 22:26:58.248 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:58.248 -07 000000626 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:26:58.248 -07 000000431 INF: FPGA: Recv ZPIEZORD 26731
17-03-17 22:26:58.258 -07 000000626 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:58.258 -07 000000626 INF: Z Motor: Piezo is near 37.1 V (nominally 0 to 100 V), expect near 45.8 V, since DAC is at 4.585 V. Piezo Error = -8.7 V.
17-03-17 22:26:58.258 -07 000000626 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.5 um, Read 10 ADC samples: Avg = 30700 (-136.7 uncal um), Error = 0.8 uncal um, Median = 30699 (-136.7 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 30692 (-136.7 uncal um), Max = 30708 (-136.8 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 22:26:58.258 -07 000000626 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30700, posNoise = 8, negNoise = 8
17-03-17 22:26:58.258 -07 000000626 INF: Z Motor: After move to -0.137542, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:26:58.258 -07 000000626 INF: Z Motor: Settle wait time = 1446 ms, measure time = 111 ms (allowed 150 ms), total time = 1557 ms
17-03-17 22:26:58.258 -07 000000626 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-17 22:26:58.298 -07 000000626 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1601 ms
17-03-17 22:26:58.298 -07 000000626 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:26:58.298 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:26:58.298 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:26:58.298 -07 000000476 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:26:58.298 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:26:58.298 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:26:58.298 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:26:58.298 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 22:26:58.308 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:26:58.308 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:26:58.308 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:26:58.308 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 22:26:58.308 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 22:26:58.318 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:26:58.358 -07 000000569 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:26:58.558 -07 000000501 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:26:58.558 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:26:58.558 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:26:58.568 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 594000200, 0x0, 559484976) start.
17-03-17 22:26:58.598 -07 000000512 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:26:58.598 -07 000000576 INF: FPGA: Recv CAMSNAP
17-03-17 22:26:58.598 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 284 ms overall
17-03-17 22:26:58.688 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 594000200, 0x0, 559484976) end. Duration was 122 ms.
17-03-17 22:26:58.688 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:26:58.688 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 22:26:58.688 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 125 ms.
17-03-17 22:26:58.698 -07 000000459 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:26:58.698 -07 000000501 INF: Autofocus start
17-03-17 22:26:58.698 -07 000000501 INF: MeasureProfile start
17-03-17 22:26:58.698 -07 000000547 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:26:58.708 -07 000000459 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:26:58.708 -07 000000459 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:26:58.708 -07 000000501 INF: MeasureProfile done
17-03-17 22:26:58.708 -07 000000501 INF: X=0  Z correction [um]=-0.02394831
17-03-17 22:26:58.708 -07 000000501 INF: Autofocus finished
17-03-17 22:26:58.908 -07 000000012 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:26:58.908 -07 000000459 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:26:58.908 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.3720703125, Z-position -0.137546664763196. ----------
17-03-17 22:26:58.908 -07 000000610 INF: Cycle	63	Tile	10	Exposure Settings		A	452	G	217	T	217	C	452
17-03-17 22:26:58.918 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28553, sync = True, waitForSettling = True)
17-03-17 22:26:58.918 -07 000000610 INF: Z Motor: Moving to -0.130707 mm, started at -0.137547 mm, distance = 6.84 um
17-03-17 22:26:58.918 -07 000000610 INF: FPGA: Xmit ZDACW 28553\n [Z Motor]
17-03-17 22:26:58.918 -07 000000569 INF: FPGA: Recv ZDACW
17-03-17 22:26:58.928 -07 000000610 INF: FPGA: 'ZDACW 28553' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:58.928 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:26:58.928 -07 000000626 INF: FPGA: Recv ZDACR 28553
17-03-17 22:26:58.938 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:58.938 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:26:59.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:59.088 -07 000000476 INF: FPGA: Recv ZSGSRD 29640
17-03-17 22:26:59.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:26:59.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:59.098 -07 000000547 INF: FPGA: Recv ZSGSRD 29632
17-03-17 22:26:59.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:59.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:59.108 -07 000000382 INF: FPGA: Recv ZSGSRD 29637
17-03-17 22:26:59.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:59.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:59.118 -07 000000012 INF: FPGA: Recv ZSGSRD 29637
17-03-17 22:26:59.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:59.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:59.128 -07 000000459 INF: FPGA: Recv ZSGSRD 29634
17-03-17 22:26:59.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:59.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:59.138 -07 000000576 INF: FPGA: Recv ZSGSRD 29631
17-03-17 22:26:59.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:59.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:59.148 -07 000000576 INF: FPGA: Recv ZSGSRD 29634
17-03-17 22:26:59.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:59.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:59.158 -07 000000547 INF: FPGA: Recv ZSGSRD 29637
17-03-17 22:26:59.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:59.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:59.168 -07 000000459 INF: FPGA: Recv ZSGSRD 29632
17-03-17 22:26:59.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:59.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:26:59.178 -07 000000547 INF: FPGA: Recv ZSGSRD 29632
17-03-17 22:26:59.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:59.188 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:26:59.188 -07 000000459 INF: FPGA: Recv ZPIEZORD 25331
17-03-17 22:26:59.198 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:26:59.198 -07 000000610 INF: Z Motor: Piezo is near 34.1 V (nominally 0 to 100 V), expect near 43.6 V, since DAC is at 4.357 V. Piezo Error = -9.5 V.
17-03-17 22:26:59.198 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.7 um, Read 10 ADC samples: Avg = 29635 (-129.9 uncal um), Error = 0.8 uncal um, Median = 29634 (-129.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29631 (-129.9 uncal um), Max = 29640 (-130.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 22:26:59.198 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29635, posNoise = 5, negNoise = 4
17-03-17 22:26:59.198 -07 000000610 INF: Z Motor: After move to -0.130707, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:26:59.198 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 22:26:59.198 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:26:59.198 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:26:59.198 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:26:59.198 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:26:59.198 -07 000000459 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:26:59.198 -07 000000547 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:26:59.198 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:26:59.198 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:26:59.198 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:26:59.198 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:26:59.198 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 22:26:59.198 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:26:59.208 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:26:59.208 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:26:59.208 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 22:26:59.208 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:26:59.208 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 22:26:59.208 -07 000000459 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 22:26:59.218 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 22:26:59.218 -07 000000547 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 22:26:59.218 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 452 452 217 217 28730 150\n [Camera]
17-03-17 22:26:59.418 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:26:59.868 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 644
17-03-17 22:26:59.868 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 644
17-03-17 22:26:59.868 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:26:59.868 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:26:59.868 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-17 22:26:59.868 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 644
17-03-17 22:26:59.868 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 644
17-03-17 22:26:59.868 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:26:59.868 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:26:59.868 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-17 22:27:00.058 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28730 837
17-03-17 22:27:00.208 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning grn on 987
17-03-17 22:27:00.258 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 384 ms.
17-03-17 22:27:00.258 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-17 22:27:00.258 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:27:00.258 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:27:00.258 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 392 ms.
17-03-17 22:27:00.258 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 22:27:00.268 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:27:00.268 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:27:00.268 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 22:27:00.268 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 22:27:00.428 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1204
17-03-17 22:27:00.428 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1204
17-03-17 22:27:00.428 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:27:00.428 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:27:00.428 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) start.
17-03-17 22:27:00.428 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1204
17-03-17 22:27:00.428 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1204
17-03-17 22:27:00.428 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:27:00.428 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:27:00.428 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 22:27:00.618 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP 1397
17-03-17 22:27:00.618 -07 000000626 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:27:00.618 -07 000000610 INF: FPGA: 'CAMDBLSNAP 452 452 217 217 28730 150' command took 2 ms to send, 1397 ms to get response, and 1404 ms overall
17-03-17 22:27:00.618 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 22:27:00.738 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.3720703125, Z-Position -0.130704878832221. ------
17-03-17 22:27:00.738 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:27:00.738 -07 000000547 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.13721 mm
17-03-17 22:27:00.738 -07 000000547 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:27:00.738 -07 000000576 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-17 22:27:00.738 -07 000000576 INF: Y Motor: Moving to 68.2126 mm, started at 67.3721 mm, delta = 0.8405 mm
17-03-17 22:27:00.738 -07 000000626 INF: Z Motor: Entering MoveAbsStepped (DAC = 29974, sync = True, waitForSettling = False)
17-03-17 22:27:00.738 -07 000000626 INF: Z Motor: Moving to -0.137212 mm, started at -0.130705 mm, distance = -6.51 um
17-03-17 22:27:00.748 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:27:00.758 -07 000000626 INF: FPGA: Xmit ZDACW 29974\n [Z Motor]
17-03-17 22:27:00.828 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) end. Duration was 399 ms.
17-03-17 22:27:00.828 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 22:27:00.828 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:27:00.828 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 398 ms.
17-03-17 22:27:00.828 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 22:27:00.828 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:27:00.838 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:27:00.838 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 22:27:00.838 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-17 22:27:00.838 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-17 22:27:00.848 -07 000000459 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:27:00.848 -07 000000459 INF: FPGA: Recv YRDPOS 137978
17-03-17 22:27:00.848 -07 000000459 INF: FPGA: Recv ZDACW
17-03-17 22:27:00.848 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 96 ms to get response, and 109 ms overall
17-03-17 22:27:00.848 -07 000000576 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:27:00.848 -07 000000576 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:27:00.848 -07 000000576 INF: Y Motor: Moving 1345 steps-22
17-03-17 22:27:00.848 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 106 ms to get response, and 112 ms overall
17-03-17 22:27:00.848 -07 000000626 INF: FPGA: 'ZDACW 29974' command took 0 ms to send, 86 ms to get response, and 109 ms overall
17-03-17 22:27:00.848 -07 000000576 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:27:00.858 -07 000000626 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:27:00.858 -07 000000459 INF: FPGA: Recv ZDACR 29974
17-03-17 22:27:00.868 -07 000000626 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 22:27:00.868 -07 000000626 INF: Z Motor: MoveAbsStepped took 122 ms (did NOT wait for settling yet))
17-03-17 22:27:00.868 -07 000000501 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:27:01.068 -07 000000459 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:27:01.068 -07 000000501 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 215 ms overall
17-03-17 22:27:01.228 -07 000000626 INF: FPGA: Recv YMVTILE
17-03-17 22:27:01.228 -07 000000576 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 376 ms to get response, and 378 ms overall
17-03-17 22:27:01.268 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:27:01.268 -07 000000501 INF: FPGA: Recv YRDPOS 139684
17-03-17 22:27:01.278 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 22:27:01.278 -07 000000576 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:27:01.278 -07 000000576 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-17 22:27:01.278 -07 000000576 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 379 ms, distance = 0.841 mm, average velocity = 2.218 mm/sec
17-03-17 22:27:01.968 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:27:01.978 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 62. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=994, R2=1021, Total=2015. Warn if over 250 bubbles per interval.
17-03-17 22:27:02.228 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:27:02.228 -07 000000459 INF: FPGA: Recv YRDPOS 139685
17-03-17 22:27:02.238 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:27:02.238 -07 000000576 INF: Y Motor: Encoder = 139685 = motor step 109128.9 = 68.2056 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:27:02.258 -07 000000576 INF: Y Motor: After move to 68.212608, error = -0.007042, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:27:02.258 -07 000000576 INF: Y Motor: Position error after settling (table move) = -14 encoder counts (-0.007 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 22:27:02.258 -07 000000576 INF: Y Motor: Moved to 68.2056 after 1517 ms (table move)
17-03-17 22:27:02.258 -07 000000547 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137212 mm (DAC = 29974)
17-03-17 22:27:02.258 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:27:02.268 -07 000000482 INF: FPGA: Recv ZSGSRD 30653
17-03-17 22:27:02.268 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 4 ms to get response, and 6 ms overall
17-03-17 22:27:02.268 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:27:02.268 -07 000000626 INF: FPGA: Recv ZSGSRD 30644
17-03-17 22:27:02.278 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 22:27:02.278 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:27:02.278 -07 000000501 INF: FPGA: Recv ZSGSRD 30647
17-03-17 22:27:02.288 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:27:02.288 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:27:02.288 -07 000000459 INF: FPGA: Recv ZSGSRD 30650
17-03-17 22:27:02.298 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:27:02.298 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:27:02.298 -07 000000482 INF: FPGA: Recv ZSGSRD 30648
17-03-17 22:27:02.308 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:27:02.308 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:27:02.308 -07 000000382 INF: FPGA: Recv ZSGSRD 30655
17-03-17 22:27:02.318 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:27:02.318 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:27:02.318 -07 000000626 INF: FPGA: Recv ZSGSRD 30655
17-03-17 22:27:02.328 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:27:02.328 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:27:02.328 -07 000000569 INF: FPGA: Recv ZSGSRD 30653
17-03-17 22:27:02.338 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:27:02.338 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:27:02.338 -07 000000482 INF: FPGA: Recv ZSGSRD 30643
17-03-17 22:27:02.348 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:27:02.348 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:27:02.348 -07 000000382 INF: FPGA: Recv ZSGSRD 30646
17-03-17 22:27:02.358 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:27:02.368 -07 000000547 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:27:02.368 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 63, FrontChillerTemperature: 3.978563,
17-03-17 22:27:02.368 -07 000000459 INF: FPGA: Recv ZPIEZORD 26697
17-03-17 22:27:02.378 -07 000000547 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:27:02.378 -07 000000547 INF: Z Motor: Piezo is near 37.0 V (nominally 0 to 100 V), expect near 45.7 V, since DAC is at 4.574 V. Piezo Error = -8.7 V.
17-03-17 22:27:02.378 -07 000000547 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.2 um, Read 10 ADC samples: Avg = 30649 (-136.4 uncal um), Error = 0.8 uncal um, Median = 30649 (-136.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30643 (-136.4 uncal um), Max = 30655 (-136.5 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 22:27:02.378 -07 000000547 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30649, posNoise = 6, negNoise = 6
17-03-17 22:27:02.378 -07 000000547 INF: Z Motor: After move to -0.137212, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:27:02.378 -07 000000547 INF: Z Motor: Settle wait time = 1519 ms, measure time = 114 ms (allowed 150 ms), total time = 1633 ms
17-03-17 22:27:02.378 -07 000000547 INF: Z Motor: Waiting extra 36 ms after reading position to reach expected total of 150 ms
17-03-17 22:27:02.418 -07 000000547 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1675 ms
17-03-17 22:27:02.418 -07 000000547 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:27:02.418 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:27:02.418 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:27:02.418 -07 000000459 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:27:02.418 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:27:02.418 -07 000000475 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:27:02.418 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:27:02.418 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 22:27:02.418 -07 000000475 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:27:02.428 -07 000000475 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:27:02.428 -07 000000475 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:27:02.428 -07 000000475 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 22:27:02.428 -07 000000475 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 22:27:02.438 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:27:02.478 -07 000000475 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:27:02.678 -07 000000475 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:27:02.678 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:27:02.678 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:27:02.678 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 22:27:02.718 -07 000000476 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:27:02.718 -07 000000626 INF: FPGA: Recv CAMSNAP
17-03-17 22:27:02.718 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 286 ms overall
17-03-17 22:27:02.798 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 22:27:02.798 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:27:02.798 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 22:27:02.798 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-17 22:27:02.818 -07 000000459 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:27:02.818 -07 000000476 INF: Autofocus start
17-03-17 22:27:02.818 -07 000000476 INF: MeasureProfile start
17-03-17 22:27:02.818 -07 000000482 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:27:02.828 -07 000000459 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 22:27:02.828 -07 000000459 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:27:02.828 -07 000000476 INF: MeasureProfile done
17-03-17 22:27:02.828 -07 000000476 INF: X=0  Z correction [um]=-0.02394831
17-03-17 22:27:02.828 -07 000000476 INF: Autofocus finished
17-03-17 22:27:03.028 -07 000000475 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:27:03.028 -07 000000459 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:27:03.028 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.20556640625, Z-position -0.137219029943967. ----------
17-03-17 22:27:03.028 -07 000000610 INF: Cycle	63	Tile	11	Exposure Settings		A	452	G	217	T	217	C	452
17-03-17 22:27:03.038 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28481, sync = True, waitForSettling = True)
17-03-17 22:27:03.038 -07 000000610 INF: Z Motor: Moving to -0.130378 mm, started at -0.137219 mm, distance = 6.84 um
17-03-17 22:27:03.038 -07 000000610 INF: FPGA: Xmit ZDACW 28481\n [Z Motor]
17-03-17 22:27:03.038 -07 000000569 INF: FPGA: Recv ZDACW
17-03-17 22:27:03.048 -07 000000610 INF: FPGA: 'ZDACW 28481' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:27:03.048 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:27:03.048 -07 000000569 INF: FPGA: Recv ZDACR 28481
17-03-17 22:27:03.058 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:27:03.058 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:27:03.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:27:03.208 -07 000000569 INF: FPGA: Recv ZSGSRD 29590
17-03-17 22:27:03.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:27:03.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:27:03.218 -07 000000576 INF: FPGA: Recv ZSGSRD 29582
17-03-17 22:27:03.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:27:03.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:27:03.228 -07 000000547 INF: FPGA: Recv ZSGSRD 29582
17-03-17 22:27:03.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:27:03.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:27:03.238 -07 000000547 INF: FPGA: Recv ZSGSRD 29581
17-03-17 22:27:03.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:27:03.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:27:03.248 -07 000000576 INF: FPGA: Recv ZSGSRD 29584
17-03-17 22:27:03.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:27:03.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:27:03.258 -07 000000547 INF: FPGA: Recv ZSGSRD 29596
17-03-17 22:27:03.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:27:03.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:27:03.268 -07 000000424 INF: FPGA: Recv ZSGSRD 29584
17-03-17 22:27:03.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:27:03.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:27:03.278 -07 000000626 INF: FPGA: Recv ZSGSRD 29585
17-03-17 22:27:03.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:27:03.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:27:03.288 -07 000000482 INF: FPGA: Recv ZSGSRD 29587
17-03-17 22:27:03.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:27:03.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:27:03.298 -07 000000382 INF: FPGA: Recv ZSGSRD 29580
17-03-17 22:27:03.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:27:03.308 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:27:03.308 -07 000000626 INF: FPGA: Recv ZPIEZORD 25288
17-03-17 22:27:03.318 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:27:03.318 -07 000000610 INF: Z Motor: Piezo is near 34.0 V (nominally 0 to 100 V), expect near 43.5 V, since DAC is at 4.346 V. Piezo Error = -9.4 V.
17-03-17 22:27:03.318 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.4 um, Read 10 ADC samples: Avg = 29585 (-129.6 uncal um), Error = 0.8 uncal um, Median = 29584 (-129.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 29580 (-129.6 uncal um), Max = 29596 (-129.7 uncal um), Pos Noise = 11 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 22:27:03.318 -07 000000610 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29585, posNoise = 11, negNoise = 5
17-03-17 22:27:03.318 -07 000000610 INF: Z Motor: After move to -0.130378, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:27:03.318 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 22:27:03.318 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:27:03.318 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:27:03.318 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:27:03.318 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:27:03.318 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:27:03.318 -07 000000547 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:27:03.318 -07 000000482 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:27:03.318 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:27:03.318 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:27:03.318 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:27:03.318 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:27:03.318 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:27:03.328 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:27:03.328 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:27:03.328 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:27:03.328 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:27:03.328 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 22:27:03.328 -07 000000482 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 22:27:03.338 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 22:27:03.338 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 22:27:03.338 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 452 452 217 217 28658 150\n [Camera]
17-03-17 22:27:03.538 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:27:03.988 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 644
17-03-17 22:27:03.988 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 644
17-03-17 22:27:03.988 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:27:03.988 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 644
17-03-17 22:27:03.988 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 644
17-03-17 22:27:03.988 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:27:03.998 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:27:03.998 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 22:27:03.998 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:27:03.998 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 22:27:04.178 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28658 837
17-03-17 22:27:04.328 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP turning grn on 987
17-03-17 22:27:04.388 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 389 ms.
17-03-17 22:27:04.388 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 22:27:04.388 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:27:04.388 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 388 ms.
17-03-17 22:27:04.388 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 22:27:04.388 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:27:04.388 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:27:04.388 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 22:27:04.388 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:27:04.398 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-17 22:27:04.548 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1204
17-03-17 22:27:04.548 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1204
17-03-17 22:27:04.548 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:27:04.548 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1204
17-03-17 22:27:04.548 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1204
17-03-17 22:27:04.548 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:27:04.558 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:27:04.558 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-17 22:27:04.558 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:27:04.558 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 22:27:04.738 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP 1397
17-03-17 22:27:04.738 -07 000000475 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:27:04.738 -07 000000610 INF: FPGA: 'CAMDBLSNAP 452 452 217 217 28658 150' command took 2 ms to send, 1398 ms to get response, and 1404 ms overall
17-03-17 22:27:04.748 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 22:27:04.858 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.20556640625, Z-Position -0.130383668225133. ------
17-03-17 22:27:04.868 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:27:04.868 -07 000000475 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.13715 mm
17-03-17 22:27:04.868 -07 000000475 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:27:04.868 -07 000000424 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-17 22:27:04.868 -07 000000424 INF: Y Motor: Moving to 69.0426 mm, started at 68.2056 mm, delta = 0.8370 mm
17-03-17 22:27:04.878 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:27:04.958 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 398 ms.
17-03-17 22:27:04.958 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 22:27:04.958 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:27:04.958 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 402 ms.
17-03-17 22:27:04.958 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 22:27:04.958 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:27:04.958 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:27:04.968 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:27:04.968 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 414 ms.
17-03-17 22:27:04.968 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-17 22:27:04.978 -07 000000576 INF: Z Motor: Entering MoveAbsStepped (DAC = 29961, sync = True, waitForSettling = False)
17-03-17 22:27:04.978 -07 000000576 INF: Z Motor: Moving to -0.137153 mm, started at -0.130384 mm, distance = -6.77 um
17-03-17 22:27:04.978 -07 000000576 INF: FPGA: Xmit ZDACW 29961\n [Z Motor]
17-03-17 22:27:04.978 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:27:04.978 -07 000000626 INF: FPGA: Recv YRDPOS 139685
17-03-17 22:27:04.978 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 105 ms to get response, and 113 ms overall
17-03-17 22:27:04.978 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 95 ms to get response, and 110 ms overall
17-03-17 22:27:04.978 -07 000000626 INF: FPGA: Recv ZDACW
17-03-17 22:27:04.978 -07 000000424 INF: Y Motor: Encoder = 139685 = motor step 109128.9 = 68.2056 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:27:04.978 -07 000000424 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:27:04.978 -07 000000424 INF: Y Motor: Moving 1339 steps-15
17-03-17 22:27:04.988 -07 000000576 INF: FPGA: 'ZDACW 29961' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:27:04.988 -07 000000501 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:27:04.998 -07 000000424 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:27:05.008 -07 000000576 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:27:05.008 -07 000000626 INF: FPGA: Recv ZDACR 29961
17-03-17 22:27:05.018 -07 000000576 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:27:05.018 -07 000000576 INF: Z Motor: MoveAbsStepped took 38 ms (did NOT wait for settling yet))
17-03-17 22:27:05.188 -07 000000576 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:27:05.188 -07 000000501 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 207 ms overall
17-03-17 22:27:05.368 -07 000000626 INF: FPGA: Recv YMVTILE
17-03-17 22:27:05.368 -07 000000424 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 389 ms overall
17-03-17 22:27:05.408 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:27:05.418 -07 000000626 INF: FPGA: Recv YRDPOS 141368
17-03-17 22:27:05.418 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:27:05.418 -07 000000424 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:27:05.418 -07 000000424 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-17 22:27:05.418 -07 000000424 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 389 ms, distance = 0.837 mm, average velocity = 2.152 mm/sec
17-03-17 22:27:06.368 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:27:06.368 -07 000000626 INF: FPGA: Recv YRDPOS 141368
17-03-17 22:27:06.378 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:27:06.378 -07 000000424 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:27:06.398 -07 000000424 INF: Y Motor: After move to 69.042610, error = -0.015266, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:27:06.398 -07 000000424 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:27:06.398 -07 000000424 INF: Y Motor: Moved to 69.0273 after 1531 ms (table move)
17-03-17 22:27:06.398 -07 000000475 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137153 mm (DAC = 29961)
17-03-17 22:27:06.398 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:27:06.408 -07 000000576 INF: FPGA: Recv ZSGSRD 30646
17-03-17 22:27:06.408 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-17 22:27:06.408 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:27:06.408 -07 000000576 INF: FPGA: Recv ZSGSRD 30641
17-03-17 22:27:06.418 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:27:06.418 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:27:06.418 -07 000000626 INF: FPGA: Recv ZSGSRD 30636
17-03-17 22:27:06.428 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:27:06.428 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:27:06.428 -07 000000424 INF: FPGA: Recv ZSGSRD 30641
17-03-17 22:27:06.438 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:27:06.438 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:27:06.438 -07 000000576 INF: FPGA: Recv ZSGSRD 30647
17-03-17 22:27:06.448 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:27:06.448 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:27:06.448 -07 000000626 INF: FPGA: Recv ZSGSRD 30645
17-03-17 22:27:06.458 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:27:06.458 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:27:06.458 -07 000000501 INF: FPGA: Recv ZSGSRD 30638
17-03-17 22:27:06.468 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:27:06.468 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:27:06.468 -07 000000576 INF: FPGA: Recv ZSGSRD 30640
17-03-17 22:27:06.478 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:27:06.478 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:27:06.478 -07 000000626 INF: FPGA: Recv ZSGSRD 30637
17-03-17 22:27:06.488 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:27:06.488 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:27:06.488 -07 000000626 INF: FPGA: Recv ZSGSRD 30638
17-03-17 22:27:06.498 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:27:06.498 -07 000000475 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:27:06.498 -07 000000501 INF: FPGA: Recv ZPIEZORD 26696
17-03-17 22:27:06.508 -07 000000475 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:27:06.508 -07 000000475 INF: Z Motor: Piezo is near 37.0 V (nominally 0 to 100 V), expect near 45.7 V, since DAC is at 4.572 V. Piezo Error = -8.7 V.
17-03-17 22:27:06.508 -07 000000475 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.2 um, Read 10 ADC samples: Avg = 30641 (-136.4 uncal um), Error = 0.8 uncal um, Median = 30640 (-136.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30636 (-136.3 uncal um), Max = 30647 (-136.4 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 22:27:06.508 -07 000000475 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30641, posNoise = 6, negNoise = 5
17-03-17 22:27:06.508 -07 000000475 INF: Z Motor: After move to -0.137153, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:27:06.508 -07 000000475 INF: Z Motor: Settle wait time = 1427 ms, measure time = 101 ms (allowed 150 ms), total time = 1528 ms
17-03-17 22:27:06.508 -07 000000475 INF: Z Motor: Waiting extra 49 ms after reading position to reach expected total of 150 ms
17-03-17 22:27:06.558 -07 000000475 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1688 ms
17-03-17 22:27:06.558 -07 000000475 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:27:06.558 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:27:06.558 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:27:06.568 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:27:06.568 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:27:06.568 -07 000000475 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:27:06.568 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:27:06.568 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:27:06.568 -07 000000475 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:27:06.568 -07 000000475 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:27:06.568 -07 000000475 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:27:06.578 -07 000000475 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 22:27:06.578 -07 000000475 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 22:27:06.578 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:27:06.618 -07 000000576 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:27:06.818 -07 000000626 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:27:06.818 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:27:06.818 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:27:06.828 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 22:27:06.858 -07 000000576 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:27:06.858 -07 000000626 INF: FPGA: Recv CAMSNAP
17-03-17 22:27:06.858 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 284 ms overall
17-03-17 22:27:06.938 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 22:27:06.938 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:27:06.938 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:27:06.938 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 22:27:06.958 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:27:06.958 -07 000000424 INF: Autofocus start
17-03-17 22:27:06.958 -07 000000424 INF: MeasureProfile start
17-03-17 22:27:06.958 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:27:06.968 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:27:06.968 -07 000000501 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:27:06.968 -07 000000424 INF: MeasureProfile done
17-03-17 22:27:06.968 -07 000000424 INF: X=-14  Z correction [um]=-0.07155244
17-03-17 22:27:06.968 -07 000000424 INF: Autofocus finished
17-03-17 22:27:06.978 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:27:06.978 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 62. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=994, R2=1021, Total=2015. Warn if over 250 bubbles per interval.
17-03-17 22:27:07.168 -07 000000627 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:27:07.168 -07 000000501 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 204 ms overall
17-03-17 22:27:07.168 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02734375, Z-position -0.137167636246832. ----------
17-03-17 22:27:07.178 -07 000000610 INF: Cycle	63	Tile	12	Exposure Settings		A	452	G	217	T	217	C	452
17-03-17 22:27:07.178 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28458, sync = True, waitForSettling = True)
17-03-17 22:27:07.178 -07 000000610 INF: Z Motor: Moving to -0.130272 mm, started at -0.137168 mm, distance = 6.90 um
17-03-17 22:27:07.178 -07 000000610 INF: FPGA: Xmit ZDACW 28458\n [Z Motor]
17-03-17 22:27:07.178 -07 000000459 INF: FPGA: Recv ZDACW
17-03-17 22:27:07.188 -07 000000610 INF: FPGA: 'ZDACW 28458' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:27:07.188 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:27:07.188 -07 000000431 INF: FPGA: Recv ZDACR 28458
17-03-17 22:27:07.198 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:27:07.198 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:27:07.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:27:07.348 -07 000000012 INF: FPGA: Recv ZSGSRD 29572
17-03-17 22:27:07.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:27:07.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:27:07.358 -07 000000431 INF: FPGA: Recv ZSGSRD 29568
17-03-17 22:27:07.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:27:07.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:27:07.368 -07 000000512 INF: FPGA: Recv ZSGSRD 29563
17-03-17 22:27:07.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:27:07.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:27:07.378 -07 000000012 INF: FPGA: Recv ZSGSRD 29569
17-03-17 22:27:07.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:27:07.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:27:07.388 -07 000000431 INF: FPGA: Recv ZSGSRD 29567
17-03-17 22:27:07.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:27:07.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:27:07.398 -07 000000012 INF: FPGA: Recv ZSGSRD 29566
17-03-17 22:27:07.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:27:07.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:27:07.408 -07 000000431 INF: FPGA: Recv ZSGSRD 29575
17-03-17 22:27:07.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:27:07.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:27:07.418 -07 000000512 INF: FPGA: Recv ZSGSRD 29568
17-03-17 22:27:07.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:27:07.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:27:07.438 -07 000000576 INF: FPGA: Recv ZSGSRD 29565
17-03-17 22:27:07.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:27:07.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:27:07.448 -07 000000627 INF: FPGA: Recv ZSGSRD 29570
17-03-17 22:27:07.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:27:07.458 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:27:07.458 -07 000000576 INF: FPGA: Recv ZPIEZORD 25243
17-03-17 22:27:07.468 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:27:07.468 -07 000000610 INF: Z Motor: Piezo is near 33.9 V (nominally 0 to 100 V), expect near 43.4 V, since DAC is at 4.342 V. Piezo Error = -9.5 V.
17-03-17 22:27:07.468 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.3 um, Read 10 ADC samples: Avg = 29568 (-129.5 uncal um), Error = 0.8 uncal um, Median = 29568 (-129.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29563 (-129.5 uncal um), Max = 29575 (-129.5 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 22:27:07.468 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29568, posNoise = 7, negNoise = 5
17-03-17 22:27:07.468 -07 000000610 INF: Z Motor: After move to -0.130272, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:27:07.468 -07 000000610 INF: Z Motor: MoveAbsStepped took 288 ms)
17-03-17 22:27:07.468 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:27:07.468 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:27:07.468 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:27:07.468 -07 000000547 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:27:07.468 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:27:07.468 -07 000000431 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:27:07.468 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:27:07.468 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:27:07.468 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:27:07.468 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:27:07.468 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:27:07.468 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:27:07.478 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:27:07.478 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:27:07.478 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:27:07.478 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:27:07.478 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 22:27:07.478 -07 000000431 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 22:27:07.488 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 22:27:07.488 -07 000000547 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 22:27:07.488 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 452 452 217 217 28634 150\n [Camera]
17-03-17 22:27:07.688 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:27:07.748 -07 000000431 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 63, FrontChillerTemperature: 3.979922,
17-03-17 22:27:08.138 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 644
17-03-17 22:27:08.138 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 644
17-03-17 22:27:08.138 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:27:08.148 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 644
17-03-17 22:27:08.148 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 644
17-03-17 22:27:08.148 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:27:08.148 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:27:08.148 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 22:27:08.148 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:27:08.148 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 22:27:08.328 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28634 837
17-03-17 22:27:08.478 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning grn on 987
17-03-17 22:27:08.548 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 397 ms.
17-03-17 22:27:08.548 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 22:27:08.548 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:27:08.548 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 397 ms.
17-03-17 22:27:08.548 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 22:27:08.548 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:27:08.548 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:27:08.548 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-17 22:27:08.548 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:27:08.558 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-17 22:27:08.698 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1204
17-03-17 22:27:08.698 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1204
17-03-17 22:27:08.698 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:27:08.698 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1204
17-03-17 22:27:08.698 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1204
17-03-17 22:27:08.698 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:27:08.698 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 2199785120, 0x0, 391868352) start.
17-03-17 22:27:08.698 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:27:08.698 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:27:08.698 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) start.
17-03-17 22:27:08.888 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP 1397
17-03-17 22:27:08.888 -07 000000547 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:27:08.888 -07 000000610 INF: FPGA: 'CAMDBLSNAP 452 452 217 217 28634 150' command took 2 ms to send, 1397 ms to get response, and 1403 ms overall
17-03-17 22:27:08.898 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 22:27:08.898 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.02734375, Z-Position -0.130274456618723. ------
17-03-17 22:27:08.898 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:27:08.898 -07 000000569 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.13672 mm
17-03-17 22:27:08.898 -07 000000569 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:27:08.898 -07 000000012 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-17 22:27:08.898 -07 000000012 INF: Y Motor: Moving to 69.8726 mm, started at 69.0273 mm, delta = 0.8453 mm
17-03-17 22:27:08.898 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:27:08.898 -07 000000501 INF: Z Motor: Entering MoveAbsStepped (DAC = 29866, sync = True, waitForSettling = False)
17-03-17 22:27:08.898 -07 000000501 INF: Z Motor: Moving to -0.136718 mm, started at -0.130274 mm, distance = -6.44 um
17-03-17 22:27:08.908 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 22:27:08.908 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:27:08.908 -07 000000459 INF: FPGA: Recv YRDPOS 141369
17-03-17 22:27:08.918 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 22:27:08.918 -07 000000012 INF: Y Motor: Encoder = 141369 = motor step 110444.5 = 69.0278 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:27:08.918 -07 000000501 INF: FPGA: Xmit ZDACW 29866\n [Z Motor]
17-03-17 22:27:08.918 -07 000000424 INF: FPGA: Recv ZDACW
17-03-17 22:27:08.918 -07 000000012 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:27:08.918 -07 000000012 INF: Y Motor: Moving 1352 steps-31
17-03-17 22:27:08.928 -07 000000501 INF: FPGA: 'ZDACW 29866' command took 0 ms to send, 0 ms to get response, and 20 ms overall
17-03-17 22:27:08.928 -07 000000431 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:27:08.938 -07 000000012 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:27:08.948 -07 000000501 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:27:08.948 -07 000000626 INF: FPGA: Recv ZDACR 29866
17-03-17 22:27:08.958 -07 000000501 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:27:08.958 -07 000000501 INF: Z Motor: MoveAbsStepped took 51 ms (did NOT wait for settling yet))
17-03-17 22:27:09.108 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 2199785120, 0x0, 391868352) end. Duration was 406 ms.
17-03-17 22:27:09.108 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-17 22:27:09.108 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:27:09.108 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) end. Duration was 405 ms.
17-03-17 22:27:09.108 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-17 22:27:09.108 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:27:09.118 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 22:27:09.118 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 414 ms.
17-03-17 22:27:09.118 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:27:09.118 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 418 ms.
17-03-17 22:27:09.128 -07 000000512 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:27:09.128 -07 000000431 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-17 22:27:09.308 -07 000000424 INF: FPGA: Recv YMVTILE
17-03-17 22:27:09.308 -07 000000012 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-17 22:27:09.348 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:27:09.358 -07 000000512 INF: FPGA: Recv YRDPOS 143080
17-03-17 22:27:09.358 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:27:09.358 -07 000000012 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:27:09.358 -07 000000012 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-17 22:27:09.358 -07 000000012 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.845 mm, average velocity = 2.140 mm/sec
17-03-17 22:27:10.308 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:27:10.308 -07 000000627 INF: FPGA: Recv YRDPOS 143081
17-03-17 22:27:10.318 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:27:10.318 -07 000000012 INF: Y Motor: Encoder = 143081 = motor step 111782.0 = 69.8638 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:27:10.358 -07 000000012 INF: Y Motor: After move to 69.872612, error = -0.008842, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:27:10.358 -07 000000012 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 22:27:10.358 -07 000000012 INF: Y Motor: Moved to 69.8638 after 1459 ms (table move)
17-03-17 22:27:10.368 -07 000000569 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136718 mm (DAC = 29866)
17-03-17 22:27:10.368 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:27:10.368 -07 000000012 INF: FPGA: Recv ZSGSRD 30567
17-03-17 22:27:10.378 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:27:10.378 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:27:10.378 -07 000000012 INF: FPGA: Recv ZSGSRD 30573
17-03-17 22:27:10.388 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:27:10.388 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:27:10.388 -07 000000012 INF: FPGA: Recv ZSGSRD 30570
17-03-17 22:27:10.398 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:27:10.398 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:27:10.398 -07 000000012 INF: FPGA: Recv ZSGSRD 30571
17-03-17 22:27:10.408 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:27:10.408 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:27:10.408 -07 000000438 INF: FPGA: Recv ZSGSRD 30561
17-03-17 22:27:10.418 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:27:10.418 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:27:10.418 -07 000000512 INF: FPGA: Recv ZSGSRD 30572
17-03-17 22:27:10.428 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:27:10.428 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:27:10.428 -07 000000627 INF: FPGA: Recv ZSGSRD 30567
17-03-17 22:27:10.438 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:27:10.438 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:27:10.438 -07 000000512 INF: FPGA: Recv ZSGSRD 30570
17-03-17 22:27:10.448 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:27:10.448 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:27:10.448 -07 000000627 INF: FPGA: Recv ZSGSRD 30580
17-03-17 22:27:10.458 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:27:10.458 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:27:10.458 -07 000000512 INF: FPGA: Recv ZSGSRD 30576
17-03-17 22:27:10.468 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:27:10.468 -07 000000569 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:27:10.468 -07 000000627 INF: FPGA: Recv ZPIEZORD 26562
17-03-17 22:27:10.478 -07 000000569 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:27:10.478 -07 000000569 INF: Z Motor: Piezo is near 36.7 V (nominally 0 to 100 V), expect near 45.6 V, since DAC is at 4.557 V. Piezo Error = -8.8 V.
17-03-17 22:27:10.478 -07 000000569 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.7 um, Read 10 ADC samples: Avg = 30571 (-135.9 uncal um), Error = 0.8 uncal um, Median = 30570 (-135.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 19 (0.1 uncal um), Min = 30561 (-135.9 uncal um), Max = 30580 (-136.0 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-17 22:27:10.478 -07 000000569 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30571, posNoise = 9, negNoise = 10
17-03-17 22:27:10.478 -07 000000569 INF: Z Motor: After move to -0.136718, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:27:10.478 -07 000000569 INF: Z Motor: Settle wait time = 1461 ms, measure time = 110 ms (allowed 150 ms), total time = 1571 ms
17-03-17 22:27:10.478 -07 000000569 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-17 22:27:10.518 -07 000000569 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1614 ms
17-03-17 22:27:10.518 -07 000000569 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:27:10.518 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:27:10.518 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:27:10.518 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:27:10.518 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:27:10.518 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:27:10.518 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:27:10.518 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 22:27:10.518 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:27:10.528 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 22:27:10.528 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:27:10.528 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 22:27:10.528 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 22:27:10.538 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:27:10.588 -07 000000627 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:27:10.778 -07 000000627 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:27:10.778 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:27:10.788 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:27:10.788 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 594000200, 0x0, 559484976) start.
17-03-17 22:27:10.818 -07 000000512 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:27:10.828 -07 000000569 INF: FPGA: Recv CAMSNAP
17-03-17 22:27:10.828 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 286 ms overall
17-03-17 22:27:10.898 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 594000200, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 22:27:10.898 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:27:10.898 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:27:10.898 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 22:27:10.928 -07 000000627 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:27:10.928 -07 000000438 INF: Autofocus start
17-03-17 22:27:10.928 -07 000000438 INF: MeasureProfile start
17-03-17 22:27:10.928 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:27:10.938 -07 000000627 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:27:10.938 -07 000000627 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:27:10.948 -07 000000438 INF: MeasureProfile done
17-03-17 22:27:10.948 -07 000000438 INF: X=-8  Z correction [um]=-0.04234553
17-03-17 22:27:10.948 -07 000000438 INF: Autofocus finished
17-03-17 22:27:11.138 -07 000000438 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:27:11.138 -07 000000627 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:27:11.138 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86376953125, Z-position -0.136717941396909. ----------
17-03-17 22:27:11.138 -07 000000610 INF: Cycle	63	Tile	13	Exposure Settings		A	452	G	217	T	217	C	452
17-03-17 22:27:11.148 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28369, sync = True, waitForSettling = True)
17-03-17 22:27:11.148 -07 000000610 INF: Z Motor: Moving to -0.129865 mm, started at -0.136718 mm, distance = 6.85 um
17-03-17 22:27:11.148 -07 000000610 INF: FPGA: Xmit ZDACW 28369\n [Z Motor]
17-03-17 22:27:11.148 -07 000000012 INF: FPGA: Recv ZDACW
17-03-17 22:27:11.158 -07 000000610 INF: FPGA: 'ZDACW 28369' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:27:11.158 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:27:11.158 -07 000000512 INF: FPGA: Recv ZDACR 28369
17-03-17 22:27:11.168 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:27:11.168 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:27:11.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:27:11.318 -07 000000569 INF: FPGA: Recv ZSGSRD 29505
17-03-17 22:27:11.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:27:11.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:27:11.328 -07 000000512 INF: FPGA: Recv ZSGSRD 29505
17-03-17 22:27:11.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:27:11.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:27:11.338 -07 000000569 INF: FPGA: Recv ZSGSRD 29512
17-03-17 22:27:11.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:27:11.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:27:11.348 -07 000000512 INF: FPGA: Recv ZSGSRD 29499
17-03-17 22:27:11.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:27:11.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:27:11.358 -07 000000569 INF: FPGA: Recv ZSGSRD 29503
17-03-17 22:27:11.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:27:11.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:27:11.368 -07 000000012 INF: FPGA: Recv ZSGSRD 29499
17-03-17 22:27:11.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:27:11.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:27:11.378 -07 000000512 INF: FPGA: Recv ZSGSRD 29506
17-03-17 22:27:11.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:27:11.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:27:11.388 -07 000000438 INF: FPGA: Recv ZSGSRD 29508
17-03-17 22:27:11.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:27:11.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:27:11.398 -07 000000012 INF: FPGA: Recv ZSGSRD 29505
17-03-17 22:27:11.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:27:11.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:27:11.408 -07 000000438 INF: FPGA: Recv ZSGSRD 29502
17-03-17 22:27:11.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:27:11.418 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:27:11.418 -07 000000512 INF: FPGA: Recv ZPIEZORD 25147
17-03-17 22:27:11.428 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:27:11.428 -07 000000610 INF: Z Motor: Piezo is near 33.7 V (nominally 0 to 100 V), expect near 43.3 V, since DAC is at 4.329 V. Piezo Error = -9.6 V.
17-03-17 22:27:11.428 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.9 um, Read 10 ADC samples: Avg = 29504 (-129.1 uncal um), Error = 0.8 uncal um, Median = 29505 (-129.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29499 (-129.1 uncal um), Max = 29512 (-129.1 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 22:27:11.428 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29504, posNoise = 8, negNoise = 5
17-03-17 22:27:11.428 -07 000000610 INF: Z Motor: After move to -0.129865, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:27:11.428 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 22:27:11.428 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:27:11.428 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:27:11.428 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:27:11.428 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:27:11.428 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:27:11.428 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:27:11.428 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:27:11.428 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:27:11.428 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:27:11.428 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:27:11.428 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:27:11.428 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:27:11.438 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:27:11.438 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:27:11.438 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:27:11.438 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:27:11.438 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 22:27:11.438 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 22:27:11.438 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 22:27:11.438 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 22:27:11.448 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 452 452 217 217 28546 150\n [Camera]
17-03-17 22:27:11.648 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:27:11.978 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:27:11.978 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 62. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=994, R2=1021, Total=2015. Warn if over 250 bubbles per interval.
17-03-17 22:27:12.098 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 644
17-03-17 22:27:12.098 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 644
17-03-17 22:27:12.098 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:27:12.098 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:27:12.098 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-17 22:27:12.098 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 644
17-03-17 22:27:12.098 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 644
17-03-17 22:27:12.098 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:27:12.098 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:27:12.098 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-17 22:27:12.288 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28546 837
17-03-17 22:27:12.448 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning grn on 990
17-03-17 22:27:12.498 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 393 ms.
17-03-17 22:27:12.498 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 22:27:12.498 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:27:12.498 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 393 ms.
17-03-17 22:27:12.498 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 22:27:12.498 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:27:12.498 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:27:12.498 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 22:27:12.498 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:27:12.508 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-17 22:27:12.658 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1204
17-03-17 22:27:12.658 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1204
17-03-17 22:27:12.658 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:27:12.658 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:27:12.658 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) start.
17-03-17 22:27:12.658 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1204
17-03-17 22:27:12.658 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1204
17-03-17 22:27:12.658 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:27:12.658 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:27:12.658 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 22:27:12.848 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP 1397
17-03-17 22:27:12.848 -07 000000512 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:27:12.848 -07 000000610 INF: FPGA: 'CAMDBLSNAP 452 452 217 217 28546 150' command took 2 ms to send, 1397 ms to get response, and 1403 ms overall
17-03-17 22:27:12.968 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 22:27:12.968 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.86376953125, Z-Position -0.12986330704165. ------
17-03-17 22:27:12.968 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:27:12.968 -07 000000482 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.13624 mm
17-03-17 22:27:12.968 -07 000000482 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:27:12.978 -07 000000476 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:27:12.978 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 22:27:12.978 -07 000000438 INF: Z Motor: Entering MoveAbsStepped (DAC = 29762, sync = True, waitForSettling = False)
17-03-17 22:27:12.978 -07 000000438 INF: Z Motor: Moving to -0.136242 mm, started at -0.129863 mm, distance = -6.38 um
17-03-17 22:27:12.978 -07 000000438 INF: FPGA: Xmit ZDACW 29762\n [Z Motor]
17-03-17 22:27:12.978 -07 000000512 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-17 22:27:12.978 -07 000000512 INF: Y Motor: Moving to 70.7026 mm, started at 69.8638 mm, delta = 0.8388 mm
17-03-17 22:27:12.978 -07 000000627 INF: FPGA: Recv ZDACW
17-03-17 22:27:12.988 -07 000000438 INF: FPGA: 'ZDACW 29762' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:27:12.988 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:27:12.988 -07 000000476 INF: FPGA: Recv YRDPOS 143081
17-03-17 22:27:12.998 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 22:27:12.998 -07 000000512 INF: Y Motor: Encoder = 143081 = motor step 111782.0 = 69.8638 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:27:12.998 -07 000000512 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:27:12.998 -07 000000512 INF: Y Motor: Moving 1342 steps-19
17-03-17 22:27:12.998 -07 000000382 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:27:13.008 -07 000000438 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:27:13.008 -07 000000626 INF: FPGA: Recv ZDACR 29762
17-03-17 22:27:13.018 -07 000000512 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:27:13.018 -07 000000438 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:27:13.018 -07 000000438 INF: Z Motor: MoveAbsStepped took 37 ms (did NOT wait for settling yet))
17-03-17 22:27:13.048 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 388 ms.
17-03-17 22:27:13.048 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 22:27:13.048 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:27:13.058 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) end. Duration was 393 ms.
17-03-17 22:27:13.058 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 22:27:13.058 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:27:13.058 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:27:13.058 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 22:27:13.058 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 22:27:13.058 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 22:27:13.118 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 63, FrontChillerTemperature: 3.997626,
17-03-17 22:27:13.198 -07 000000438 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:27:13.198 -07 000000382 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 193 ms to get response, and 220 ms overall
17-03-17 22:27:13.388 -07 000000627 INF: FPGA: Recv YMVTILE
17-03-17 22:27:13.388 -07 000000512 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 22:27:13.448 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:27:13.448 -07 000000424 INF: FPGA: Recv YRDPOS 144770
17-03-17 22:27:13.458 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-17 22:27:13.458 -07 000000512 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:27:13.458 -07 000000512 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-17 22:27:13.458 -07 000000512 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.839 mm, average velocity = 2.113 mm/sec
17-03-17 22:27:14.408 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:27:14.408 -07 000000627 INF: FPGA: Recv YRDPOS 144771
17-03-17 22:27:14.418 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:27:14.418 -07 000000512 INF: Y Motor: Encoder = 144771 = motor step 113102.3 = 70.6890 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:27:14.438 -07 000000512 INF: Y Motor: After move to 70.702606, error = -0.013641, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:27:14.438 -07 000000512 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 22:27:14.438 -07 000000512 INF: Y Motor: Moved to 70.6890 after 1461 ms (table move)
17-03-17 22:27:14.438 -07 000000482 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136242 mm (DAC = 29762)
17-03-17 22:27:14.438 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:27:14.448 -07 000000512 INF: FPGA: Recv ZSGSRD 30504
17-03-17 22:27:14.448 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 22:27:14.448 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:27:14.448 -07 000000512 INF: FPGA: Recv ZSGSRD 30501
17-03-17 22:27:14.458 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:27:14.458 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:27:14.458 -07 000000512 INF: FPGA: Recv ZSGSRD 30498
17-03-17 22:27:14.468 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:27:14.468 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:27:14.468 -07 000000476 INF: FPGA: Recv ZSGSRD 30494
17-03-17 22:27:14.478 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:27:14.478 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:27:14.478 -07 000000512 INF: FPGA: Recv ZSGSRD 30501
17-03-17 22:27:14.488 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:27:14.488 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:27:14.488 -07 000000382 INF: FPGA: Recv ZSGSRD 30497
17-03-17 22:27:14.498 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:27:14.498 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:27:14.498 -07 000000626 INF: FPGA: Recv ZSGSRD 30490
17-03-17 22:27:14.508 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:27:14.508 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:27:14.508 -07 000000424 INF: FPGA: Recv ZSGSRD 30496
17-03-17 22:27:14.518 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:27:14.518 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:27:14.518 -07 000000382 INF: FPGA: Recv ZSGSRD 30495
17-03-17 22:27:14.528 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:27:14.528 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:27:14.528 -07 000000424 INF: FPGA: Recv ZSGSRD 30504
17-03-17 22:27:14.538 -07 000000482 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:27:14.538 -07 000000482 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:27:14.538 -07 000000626 INF: FPGA: Recv ZPIEZORD 26482
17-03-17 22:27:14.548 -07 000000482 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:27:14.548 -07 000000482 INF: Z Motor: Piezo is near 36.6 V (nominally 0 to 100 V), expect near 45.4 V, since DAC is at 4.541 V. Piezo Error = -8.8 V.
17-03-17 22:27:14.548 -07 000000482 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.2 um, Read 10 ADC samples: Avg = 30498 (-135.5 uncal um), Error = 0.8 uncal um, Median = 30498 (-135.5 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30490 (-135.4 uncal um), Max = 30504 (-135.5 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 22:27:14.548 -07 000000482 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30498, posNoise = 6, negNoise = 8
17-03-17 22:27:14.548 -07 000000482 INF: Z Motor: After move to -0.136242, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:27:14.548 -07 000000482 INF: Z Motor: Settle wait time = 1465 ms, measure time = 102 ms (allowed 150 ms), total time = 1567 ms
17-03-17 22:27:14.548 -07 000000482 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 22:27:14.598 -07 000000482 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1620 ms
17-03-17 22:27:14.598 -07 000000482 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:27:14.598 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:27:14.598 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:27:14.598 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:27:14.598 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:27:14.598 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:27:14.598 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:27:14.598 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:27:14.598 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:27:14.608 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:27:14.608 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:27:14.618 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 22:27:14.618 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 22:27:14.618 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:27:14.668 -07 000000512 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:27:14.868 -07 000000482 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:27:14.868 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:27:14.868 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:27:14.868 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 22:27:14.898 -07 000000512 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:27:14.908 -07 000000626 INF: FPGA: Recv CAMSNAP
17-03-17 22:27:14.908 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 285 ms overall
17-03-17 22:27:14.988 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 123 ms.
17-03-17 22:27:14.988 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:27:14.988 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 22:27:14.988 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 126 ms.
17-03-17 22:27:15.008 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:27:15.008 -07 000000482 INF: Autofocus start
17-03-17 22:27:15.008 -07 000000482 INF: MeasureProfile start
17-03-17 22:27:15.008 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:27:15.018 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 22:27:15.018 -07 000000424 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:27:15.018 -07 000000482 INF: MeasureProfile done
17-03-17 22:27:15.018 -07 000000482 INF: X=-32  Z correction [um]=-0.1591732
17-03-17 22:27:15.018 -07 000000482 INF: Autofocus finished
17-03-17 22:27:15.218 -07 000000482 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:27:15.218 -07 000000424 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:27:15.218 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.68896484375, Z-position -0.136248973910561. ----------
17-03-17 22:27:15.218 -07 000000610 INF: Cycle	63	Tile	14	Exposure Settings		A	452	G	217	T	217	C	452
17-03-17 22:27:15.228 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28240, sync = True, waitForSettling = True)
17-03-17 22:27:15.228 -07 000000610 INF: Z Motor: Moving to -0.129274 mm, started at -0.136249 mm, distance = 6.97 um
17-03-17 22:27:15.228 -07 000000610 INF: FPGA: Xmit ZDACW 28240\n [Z Motor]
17-03-17 22:27:15.228 -07 000000626 INF: FPGA: Recv ZDACW
17-03-17 22:27:15.238 -07 000000610 INF: FPGA: 'ZDACW 28240' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:27:15.238 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:27:15.238 -07 000000382 INF: FPGA: Recv ZDACR 28240
17-03-17 22:27:15.248 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:27:15.268 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:27:15.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:27:15.418 -07 000000424 INF: FPGA: Recv ZSGSRD 29419
17-03-17 22:27:15.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:27:15.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:27:15.428 -07 000000512 INF: FPGA: Recv ZSGSRD 29408
17-03-17 22:27:15.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:27:15.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:27:15.438 -07 000000512 INF: FPGA: Recv ZSGSRD 29415
17-03-17 22:27:15.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:27:15.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:27:15.448 -07 000000512 INF: FPGA: Recv ZSGSRD 29409
17-03-17 22:27:15.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:27:15.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:27:15.458 -07 000000424 INF: FPGA: Recv ZSGSRD 29412
17-03-17 22:27:15.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:27:15.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:27:15.468 -07 000000512 INF: FPGA: Recv ZSGSRD 29416
17-03-17 22:27:15.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:27:15.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:27:15.478 -07 000000626 INF: FPGA: Recv ZSGSRD 29410
17-03-17 22:27:15.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:27:15.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:27:15.488 -07 000000512 INF: FPGA: Recv ZSGSRD 29413
17-03-17 22:27:15.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:27:15.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:27:15.498 -07 000000512 INF: FPGA: Recv ZSGSRD 29410
17-03-17 22:27:15.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:27:15.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:27:15.508 -07 000000482 INF: FPGA: Recv ZSGSRD 29412
17-03-17 22:27:15.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:27:15.518 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:27:15.518 -07 000000512 INF: FPGA: Recv ZPIEZORD 25074
17-03-17 22:27:15.528 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:27:15.528 -07 000000610 INF: Z Motor: Piezo is near 33.6 V (nominally 0 to 100 V), expect near 43.1 V, since DAC is at 4.309 V. Piezo Error = -9.5 V.
17-03-17 22:27:15.528 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.3 um, Read 10 ADC samples: Avg = 29412 (-128.5 uncal um), Error = 0.8 uncal um, Median = 29412 (-128.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29408 (-128.5 uncal um), Max = 29419 (-128.5 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 22:27:15.528 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29412, posNoise = 7, negNoise = 4
17-03-17 22:27:15.528 -07 000000610 INF: Z Motor: After move to -0.129274, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:27:15.528 -07 000000610 INF: Z Motor: MoveAbsStepped took 300 ms)
17-03-17 22:27:15.528 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:27:15.528 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:27:15.528 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:27:15.528 -07 000000482 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:27:15.528 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:27:15.528 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:27:15.528 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:27:15.528 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:27:15.528 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 22:27:15.528 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:27:15.528 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:27:15.528 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:27:15.528 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:27:15.538 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:27:15.538 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:27:15.538 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:27:15.548 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 22:27:15.548 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 22:27:15.548 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 22:27:15.548 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms.
17-03-17 22:27:15.548 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 452 452 217 217 28416 150\n [Camera]
17-03-17 22:27:15.748 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:27:16.198 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 644
17-03-17 22:27:16.198 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 644
17-03-17 22:27:16.198 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:27:16.198 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 644
17-03-17 22:27:16.198 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 644
17-03-17 22:27:16.208 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:27:16.208 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:27:16.208 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 22:27:16.208 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:27:16.208 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 22:27:16.388 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28416 837
17-03-17 22:27:16.548 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning grn on 990
17-03-17 22:27:16.588 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 22:27:16.588 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 22:27:16.588 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:27:16.588 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 22:27:16.588 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 22:27:16.588 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:27:16.588 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 22:27:16.588 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 22:27:16.588 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 22:27:16.598 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 22:27:16.758 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1204
17-03-17 22:27:16.758 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1204
17-03-17 22:27:16.758 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:27:16.758 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1204
17-03-17 22:27:16.758 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1204
17-03-17 22:27:16.768 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:27:16.768 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:27:16.768 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-17 22:27:16.778 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:27:16.778 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-17 22:27:16.948 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP 1397
17-03-17 22:27:16.948 -07 000000459 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:27:16.948 -07 000000610 INF: FPGA: 'CAMDBLSNAP 452 452 217 217 28416 150' command took 2 ms to send, 1397 ms to get response, and 1403 ms overall
17-03-17 22:27:17.068 -07 000000547 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:27:17.068 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 62. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=994, R2=1021, Total=2015. Warn if over 250 bubbles per interval.
17-03-17 22:27:17.068 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 22:27:17.068 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.68896484375, Z-Position -0.129272279524608. ------
17-03-17 22:27:17.078 -07 000000627 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.13601 mm
17-03-17 22:27:17.078 -07 000000627 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:27:17.078 -07 000000459 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:27:17.078 -07 000000431 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-17 22:27:17.078 -07 000000431 INF: Y Motor: Moving to 71.5326 mm, started at 70.6890 mm, delta = 0.8436 mm
17-03-17 22:27:17.078 -07 000000382 INF: Z Motor: Entering MoveAbsStepped (DAC = 29711, sync = True, waitForSettling = False)
17-03-17 22:27:17.078 -07 000000382 INF: Z Motor: Moving to -0.136008 mm, started at -0.129272 mm, distance = -6.74 um
17-03-17 22:27:17.078 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:27:17.088 -07 000000459 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:27:17.088 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:27:17.088 -07 000000012 INF: FPGA: Recv YRDPOS 144771
17-03-17 22:27:17.098 -07 000000382 INF: FPGA: Xmit ZDACW 29711\n [Z Motor]
17-03-17 22:27:17.098 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 22:27:17.098 -07 000000431 INF: Y Motor: Encoder = 144771 = motor step 113102.3 = 70.6890 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:27:17.098 -07 000000431 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:27:17.098 -07 000000431 INF: Y Motor: Moving 1350 steps-29
17-03-17 22:27:17.098 -07 000000012 INF: FPGA: Recv ZDACW
17-03-17 22:27:17.108 -07 000000382 INF: FPGA: 'ZDACW 29711' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-17 22:27:17.108 -07 000000459 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:27:17.118 -07 000000431 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:27:17.128 -07 000000382 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:27:17.128 -07 000000424 INF: FPGA: Recv ZDACR 29711
17-03-17 22:27:17.138 -07 000000382 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:27:17.138 -07 000000382 INF: Z Motor: MoveAbsStepped took 55 ms (did NOT wait for settling yet))
17-03-17 22:27:17.158 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 387 ms.
17-03-17 22:27:17.158 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 22:27:17.158 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:27:17.158 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 386 ms.
17-03-17 22:27:17.158 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 22:27:17.158 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:27:17.158 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:27:17.158 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 22:27:17.168 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:27:17.168 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-17 22:27:17.308 -07 000000626 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:27:17.308 -07 000000459 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-17 22:27:17.488 -07 000000475 INF: FPGA: Recv YMVTILE
17-03-17 22:27:17.488 -07 000000431 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 367 ms to get response, and 397 ms overall
17-03-17 22:27:17.528 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:27:17.538 -07 000000512 INF: FPGA: Recv YRDPOS 146471
17-03-17 22:27:17.538 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:27:17.538 -07 000000431 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:27:17.538 -07 000000431 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 22:27:17.538 -07 000000431 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.844 mm, average velocity = 2.125 mm/sec
17-03-17 22:27:18.488 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 63, FrontChillerTemperature: 3.999021,
17-03-17 22:27:18.498 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:27:18.498 -07 000000012 INF: FPGA: Recv YRDPOS 146471
17-03-17 22:27:18.508 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 20 ms overall
17-03-17 22:27:18.508 -07 000000431 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:27:18.528 -07 000000431 INF: Y Motor: After move to 71.532608, error = -0.013565, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:27:18.528 -07 000000431 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:27:18.528 -07 000000431 INF: Y Motor: Moved to 71.5190 after 1452 ms (table move)
17-03-17 22:27:18.538 -07 000000627 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136008 mm (DAC = 29711)
17-03-17 22:27:18.548 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:27:18.548 -07 000000382 INF: FPGA: Recv ZSGSRD 30459
17-03-17 22:27:18.558 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:27:18.558 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:27:18.558 -07 000000547 INF: FPGA: Recv ZSGSRD 30465
17-03-17 22:27:18.568 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:27:18.568 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:27:18.568 -07 000000547 INF: FPGA: Recv ZSGSRD 30461
17-03-17 22:27:18.578 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:27:18.578 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:27:18.578 -07 000000012 INF: FPGA: Recv ZSGSRD 30462
17-03-17 22:27:18.588 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:27:18.588 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:27:18.588 -07 000000382 INF: FPGA: Recv ZSGSRD 30459
17-03-17 22:27:18.598 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:27:18.598 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:27:18.598 -07 000000382 INF: FPGA: Recv ZSGSRD 30461
17-03-17 22:27:18.608 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:27:18.608 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:27:18.608 -07 000000424 INF: FPGA: Recv ZSGSRD 30455
17-03-17 22:27:18.618 -07 000000627 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:27:18.618 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:27:18.618 -07 000000424 INF: FPGA: Recv ZSGSRD 30457
17-03-17 22:27:18.628 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:27:18.628 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:27:18.628 -07 000000424 INF: FPGA: Recv ZSGSRD 30468
17-03-17 22:27:18.638 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:27:18.638 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:27:18.638 -07 000000424 INF: FPGA: Recv ZSGSRD 30466
17-03-17 22:27:18.648 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:27:18.648 -07 000000627 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:27:18.648 -07 000000424 INF: FPGA: Recv ZPIEZORD 26499
17-03-17 22:27:18.658 -07 000000627 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:27:18.658 -07 000000627 INF: Z Motor: Piezo is near 36.6 V (nominally 0 to 100 V), expect near 45.3 V, since DAC is at 4.534 V. Piezo Error = -8.7 V.
17-03-17 22:27:18.658 -07 000000627 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.0 um, Read 10 ADC samples: Avg = 30461 (-135.2 uncal um), Error = 0.8 uncal um, Median = 30461 (-135.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30455 (-135.2 uncal um), Max = 30468 (-135.3 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 22:27:18.658 -07 000000627 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30461, posNoise = 7, negNoise = 6
17-03-17 22:27:18.658 -07 000000627 INF: Z Motor: After move to -0.136008, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:27:18.658 -07 000000627 INF: Z Motor: Settle wait time = 1455 ms, measure time = 120 ms (allowed 150 ms), total time = 1575 ms
17-03-17 22:27:18.658 -07 000000627 INF: Z Motor: Waiting extra 30 ms after reading position to reach expected total of 150 ms
17-03-17 22:27:18.688 -07 000000627 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1608 ms
17-03-17 22:27:18.688 -07 000000627 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:27:18.688 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:27:18.688 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:27:18.688 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:27:18.688 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:27:18.688 -07 000000475 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:27:18.688 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:27:18.688 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:27:18.688 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:27:18.688 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:27:18.698 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:27:18.698 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 22:27:18.698 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-17 22:27:18.708 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:27:18.748 -07 000000424 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:27:18.948 -07 000000012 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:27:18.948 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:27:18.948 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:27:18.948 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 22:27:18.988 -07 000000431 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:27:18.988 -07 000000627 INF: FPGA: Recv CAMSNAP
17-03-17 22:27:18.988 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 284 ms overall
17-03-17 22:27:19.068 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 22:27:19.068 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:27:19.068 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:27:19.068 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 22:27:19.088 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:27:19.088 -07 000000431 INF: Autofocus start
17-03-17 22:27:19.088 -07 000000431 INF: MeasureProfile start
17-03-17 22:27:19.088 -07 000000627 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:27:19.098 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:27:19.098 -07 000000626 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:27:19.098 -07 000000431 INF: MeasureProfile done
17-03-17 22:27:19.098 -07 000000431 INF: X=32  Z correction [um]=0.1299841
17-03-17 22:27:19.098 -07 000000431 INF: Autofocus finished
17-03-17 22:27:19.298 -07 000000431 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:27:19.298 -07 000000626 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:27:19.298 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.51904296875, Z-position -0.136011278061315. ----------
17-03-17 22:27:19.298 -07 000000610 INF: Cycle	63	Tile	15	Exposure Settings		A	452	G	217	T	217	C	452
17-03-17 22:27:19.308 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28252, sync = True, waitForSettling = True)
17-03-17 22:27:19.308 -07 000000610 INF: Z Motor: Moving to -0.129329 mm, started at -0.136011 mm, distance = 6.68 um
17-03-17 22:27:19.308 -07 000000610 INF: FPGA: Xmit ZDACW 28252\n [Z Motor]
17-03-17 22:27:19.308 -07 000000512 INF: FPGA: Recv ZDACW
17-03-17 22:27:19.318 -07 000000610 INF: FPGA: 'ZDACW 28252' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:27:19.318 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:27:19.318 -07 000000512 INF: FPGA: Recv ZDACR 28252
17-03-17 22:27:19.328 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:27:19.328 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:27:19.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:27:19.478 -07 000000012 INF: FPGA: Recv ZSGSRD 29425
17-03-17 22:27:19.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:27:19.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:27:19.488 -07 000000626 INF: FPGA: Recv ZSGSRD 29422
17-03-17 22:27:19.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:27:19.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:27:19.498 -07 000000512 INF: FPGA: Recv ZSGSRD 29425
17-03-17 22:27:19.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:27:19.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:27:19.508 -07 000000012 INF: FPGA: Recv ZSGSRD 29424
17-03-17 22:27:19.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:27:19.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:27:19.518 -07 000000012 INF: FPGA: Recv ZSGSRD 29414
17-03-17 22:27:19.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:27:19.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:27:19.528 -07 000000627 INF: FPGA: Recv ZSGSRD 29421
17-03-17 22:27:19.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:27:19.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:27:19.538 -07 000000431 INF: FPGA: Recv ZSGSRD 29422
17-03-17 22:27:19.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:27:19.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:27:19.548 -07 000000627 INF: FPGA: Recv ZSGSRD 29421
17-03-17 22:27:19.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:27:19.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:27:19.558 -07 000000431 INF: FPGA: Recv ZSGSRD 29420
17-03-17 22:27:19.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:27:19.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:27:19.568 -07 000000626 INF: FPGA: Recv ZSGSRD 29422
17-03-17 22:27:19.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:27:19.578 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:27:19.578 -07 000000012 INF: FPGA: Recv ZPIEZORD 25130
17-03-17 22:27:19.588 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:27:19.588 -07 000000610 INF: Z Motor: Piezo is near 33.7 V (nominally 0 to 100 V), expect near 43.1 V, since DAC is at 4.311 V. Piezo Error = -9.4 V.
17-03-17 22:27:19.588 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.3 um, Read 10 ADC samples: Avg = 29422 (-128.6 uncal um), Error = 0.8 uncal um, Median = 29422 (-128.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29414 (-128.5 uncal um), Max = 29425 (-128.6 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 22:27:19.588 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29422, posNoise = 3, negNoise = 8
17-03-17 22:27:19.588 -07 000000610 INF: Z Motor: After move to -0.129329, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:27:19.588 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 22:27:19.588 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:27:19.588 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:27:19.588 -07 000000431 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:27:19.588 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:27:19.588 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:27:19.588 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:27:19.588 -07 000000627 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:27:19.588 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:27:19.588 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-17 22:27:19.588 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:27:19.588 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:27:19.588 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:27:19.598 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:27:19.598 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:27:19.598 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:27:19.598 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:27:19.608 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 13 ms.
17-03-17 22:27:19.608 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 22:27:19.608 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 12 ms.
17-03-17 22:27:19.608 -07 000000627 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 22:27:19.608 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 452 452 217 217 28429 150\n [Camera]
17-03-17 22:27:19.808 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:27:20.258 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 644
17-03-17 22:27:20.258 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 644
17-03-17 22:27:20.268 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:27:20.268 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 644
17-03-17 22:27:20.268 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 644
17-03-17 22:27:20.268 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:27:20.268 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:27:20.268 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 22:27:20.268 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:27:20.268 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 22:27:20.458 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28429 837
17-03-17 22:27:20.608 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning grn on 987
17-03-17 22:27:20.648 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 377 ms.
17-03-17 22:27:20.648 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-17 22:27:20.648 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:27:20.648 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 384 ms.
17-03-17 22:27:20.658 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:27:20.658 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 22:27:20.658 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:27:20.658 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:27:20.658 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 22:27:20.658 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 22:27:20.818 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1204
17-03-17 22:27:20.818 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1204
17-03-17 22:27:20.828 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:27:20.828 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1204
17-03-17 22:27:20.828 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1204
17-03-17 22:27:20.828 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:27:20.828 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 1130172064, 0x0, 391868352) start.
17-03-17 22:27:20.828 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:27:20.828 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:27:20.828 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 1165594328, 0x0, 418435064) start.
17-03-17 22:27:21.018 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP 1397
17-03-17 22:27:21.018 -07 000000012 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:27:21.018 -07 000000610 INF: FPGA: 'CAMDBLSNAP 452 452 217 217 28429 150' command took 2 ms to send, 1391 ms to get response, and 1404 ms overall
17-03-17 22:27:21.018 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 22:27:21.018 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.51904296875, Z-Position -0.129336521646026. ------
17-03-17 22:27:21.018 -07 000000438 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:27:21.018 -07 000000512 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.13568 mm
17-03-17 22:27:21.018 -07 000000512 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:27:21.018 -07 000000012 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-17 22:27:21.018 -07 000000012 INF: Y Motor: Moving to 72.3626 mm, started at 71.5190 mm, delta = 0.8436 mm
17-03-17 22:27:21.018 -07 000000501 INF: Z Motor: Entering MoveAbsStepped (DAC = 29640, sync = True, waitForSettling = False)
17-03-17 22:27:21.018 -07 000000501 INF: Z Motor: Moving to -0.135683 mm, started at -0.129337 mm, distance = -6.35 um
17-03-17 22:27:21.018 -07 000000547 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:27:21.028 -07 000000438 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:27:21.028 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:27:21.028 -07 000000547 INF: FPGA: Recv YRDPOS 146472
17-03-17 22:27:21.038 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:27:21.038 -07 000000438 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:27:21.038 -07 000000012 INF: Y Motor: Encoder = 146472 = motor step 114431.3 = 71.5195 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:27:21.038 -07 000000012 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:27:21.038 -07 000000012 INF: Y Motor: Moving 1349 steps-28
17-03-17 22:27:21.048 -07 000000501 INF: FPGA: Xmit ZDACW 29640\n [Z Motor]
17-03-17 22:27:21.048 -07 000000547 INF: FPGA: Recv ZDACW
17-03-17 22:27:21.058 -07 000000012 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:27:21.058 -07 000000501 INF: FPGA: 'ZDACW 29640' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-17 22:27:21.068 -07 000000501 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:27:21.068 -07 000000547 INF: FPGA: Recv ZDACR 29640
17-03-17 22:27:21.078 -07 000000501 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:27:21.078 -07 000000501 INF: Z Motor: MoveAbsStepped took 50 ms (did NOT wait for settling yet))
17-03-17 22:27:21.228 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 1130172064, 0x0, 391868352) end. Duration was 403 ms.
17-03-17 22:27:21.228 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-17 22:27:21.228 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:27:21.228 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 1165594328, 0x0, 418435064) end. Duration was 402 ms.
17-03-17 22:27:21.228 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-17 22:27:21.228 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:27:21.238 -07 000000475 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:27:21.238 -07 000000438 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 212 ms overall
17-03-17 22:27:21.238 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:27:21.238 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 413 ms.
17-03-17 22:27:21.238 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:27:21.248 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-17 22:27:21.428 -07 000000476 INF: FPGA: Recv YMVTILE
17-03-17 22:27:21.428 -07 000000012 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 391 ms overall
17-03-17 22:27:21.468 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:27:21.478 -07 000000627 INF: FPGA: Recv YRDPOS 148172
17-03-17 22:27:21.478 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:27:21.478 -07 000000012 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:27:21.478 -07 000000012 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-17 22:27:21.478 -07 000000012 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 391 ms, distance = 0.844 mm, average velocity = 2.157 mm/sec
17-03-17 22:27:21.978 -07 000000547 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:27:21.978 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 62. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=994, R2=1021, Total=2015. Warn if over 250 bubbles per interval.
17-03-17 22:27:22.428 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:27:22.428 -07 000000547 INF: FPGA: Recv YRDPOS 148172
17-03-17 22:27:22.438 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:27:22.438 -07 000000012 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:27:22.458 -07 000000012 INF: Y Motor: After move to 72.362610, error = -0.013000, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:27:22.458 -07 000000012 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:27:22.458 -07 000000012 INF: Y Motor: Moved to 72.3496 after 1436 ms (table move)
17-03-17 22:27:22.458 -07 000000512 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135683 mm (DAC = 29640)
17-03-17 22:27:22.458 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:27:22.468 -07 000000501 INF: FPGA: Recv ZSGSRD 30415
17-03-17 22:27:22.468 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 22:27:22.468 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:27:22.468 -07 000000501 INF: FPGA: Recv ZSGSRD 30410
17-03-17 22:27:22.478 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:27:22.478 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:27:22.478 -07 000000382 INF: FPGA: Recv ZSGSRD 30405
17-03-17 22:27:22.488 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:27:22.488 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:27:22.488 -07 000000476 INF: FPGA: Recv ZSGSRD 30412
17-03-17 22:27:22.498 -07 000000512 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:27:22.498 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:27:22.498 -07 000000476 INF: FPGA: Recv ZSGSRD 30416
17-03-17 22:27:22.508 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:27:22.508 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:27:22.508 -07 000000476 INF: FPGA: Recv ZSGSRD 30412
17-03-17 22:27:22.518 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:27:22.518 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:27:22.518 -07 000000476 INF: FPGA: Recv ZSGSRD 30413
17-03-17 22:27:22.528 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:27:22.528 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:27:22.528 -07 000000476 INF: FPGA: Recv ZSGSRD 30407
17-03-17 22:27:22.538 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:27:22.538 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:27:22.538 -07 000000476 INF: FPGA: Recv ZSGSRD 30405
17-03-17 22:27:22.548 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:27:22.548 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:27:22.548 -07 000000476 INF: FPGA: Recv ZSGSRD 30406
17-03-17 22:27:22.558 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:27:22.558 -07 000000512 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:27:22.558 -07 000000476 INF: FPGA: Recv ZPIEZORD 26393
17-03-17 22:27:22.568 -07 000000512 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:27:22.568 -07 000000512 INF: Z Motor: Piezo is near 36.4 V (nominally 0 to 100 V), expect near 45.2 V, since DAC is at 4.523 V. Piezo Error = -8.8 V.
17-03-17 22:27:22.568 -07 000000512 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.7 um, Read 10 ADC samples: Avg = 30410 (-134.9 uncal um), Error = 0.8 uncal um, Median = 30411 (-134.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30405 (-134.9 uncal um), Max = 30416 (-134.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 22:27:22.568 -07 000000512 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30410, posNoise = 6, negNoise = 5
17-03-17 22:27:22.568 -07 000000512 INF: Z Motor: After move to -0.135683, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:27:22.568 -07 000000512 INF: Z Motor: Settle wait time = 1439 ms, measure time = 102 ms (allowed 150 ms), total time = 1541 ms
17-03-17 22:27:22.568 -07 000000512 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 22:27:22.618 -07 000000512 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1593 ms
17-03-17 22:27:22.618 -07 000000512 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:27:22.618 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:27:22.618 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:27:22.618 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:27:22.618 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:27:22.618 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:27:22.618 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:27:22.618 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 22:27:22.618 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:27:22.628 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:27:22.628 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:27:22.638 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 22:27:22.638 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 22:27:22.638 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:27:22.688 -07 000000547 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:27:22.888 -07 000000547 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:27:22.888 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:27:22.888 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:27:22.888 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 594000200, 0x0, 559484976) start.
17-03-17 22:27:22.928 -07 000000012 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:27:22.928 -07 000000626 INF: FPGA: Recv CAMSNAP
17-03-17 22:27:22.928 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 283 ms to get response, and 287 ms overall
17-03-17 22:27:23.018 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 594000200, 0x0, 559484976) end. Duration was 125 ms.
17-03-17 22:27:23.018 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:27:23.018 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:27:23.018 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-17 22:27:23.028 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:27:23.028 -07 000000512 INF: Autofocus start
17-03-17 22:27:23.028 -07 000000512 INF: MeasureProfile start
17-03-17 22:27:23.028 -07 000000547 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:27:23.038 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:27:23.038 -07 000000501 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:27:23.038 -07 000000512 INF: MeasureProfile done
17-03-17 22:27:23.038 -07 000000512 INF: X=0  Z correction [um]=-0.02394831
17-03-17 22:27:23.038 -07 000000512 INF: Autofocus finished
17-03-17 22:27:23.238 -07 000000547 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:27:23.238 -07 000000501 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:27:23.238 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.349609375, Z-position -0.135683643242086. ----------
17-03-17 22:27:23.238 -07 000000610 INF: Cycle	63	Tile	16	Exposure Settings		A	452	G	217	T	217	C	452
17-03-17 22:27:23.238 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28148, sync = True, waitForSettling = True)
17-03-17 22:27:23.238 -07 000000610 INF: Z Motor: Moving to -0.128853 mm, started at -0.135684 mm, distance = 6.83 um
17-03-17 22:27:23.248 -07 000000610 INF: FPGA: Xmit ZDACW 28148\n [Z Motor]
17-03-17 22:27:23.248 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 22:27:23.258 -07 000000610 INF: FPGA: 'ZDACW 28148' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:27:23.258 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:27:23.258 -07 000000512 INF: FPGA: Recv ZDACR 28148
17-03-17 22:27:23.268 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:27:23.268 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:27:23.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:27:23.418 -07 000000476 INF: FPGA: Recv ZSGSRD 29351
17-03-17 22:27:23.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:27:23.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:27:23.428 -07 000000476 INF: FPGA: Recv ZSGSRD 29343
17-03-17 22:27:23.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:27:23.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:27:23.438 -07 000000475 INF: FPGA: Recv ZSGSRD 29344
17-03-17 22:27:23.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:27:23.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:27:23.448 -07 000000501 INF: FPGA: Recv ZSGSRD 29350
17-03-17 22:27:23.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:27:23.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:27:23.458 -07 000000512 INF: FPGA: Recv ZSGSRD 29347
17-03-17 22:27:23.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:27:23.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:27:23.468 -07 000000547 INF: FPGA: Recv ZSGSRD 29345
17-03-17 22:27:23.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:27:23.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:27:23.478 -07 000000512 INF: FPGA: Recv ZSGSRD 29343
17-03-17 22:27:23.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:27:23.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:27:23.488 -07 000000547 INF: FPGA: Recv ZSGSRD 29343
17-03-17 22:27:23.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:27:23.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:27:23.498 -07 000000382 INF: FPGA: Recv ZSGSRD 29346
17-03-17 22:27:23.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:27:23.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:27:23.508 -07 000000512 INF: FPGA: Recv ZSGSRD 29344
17-03-17 22:27:23.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:27:23.518 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:27:23.518 -07 000000547 INF: FPGA: Recv ZPIEZORD 25009
17-03-17 22:27:23.528 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:27:23.528 -07 000000610 INF: Z Motor: Piezo is near 33.4 V (nominally 0 to 100 V), expect near 43.0 V, since DAC is at 4.295 V. Piezo Error = -9.5 V.
17-03-17 22:27:23.528 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.9 um, Read 10 ADC samples: Avg = 29346 (-128.1 uncal um), Error = 0.8 uncal um, Median = 29344 (-128.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29343 (-128.1 uncal um), Max = 29351 (-128.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 22:27:23.528 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29346, posNoise = 5, negNoise = 3
17-03-17 22:27:23.528 -07 000000610 INF: Z Motor: After move to -0.128853, error = 0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:27:23.528 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 22:27:23.528 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:27:23.528 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:27:23.528 -07 000000475 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:27:23.528 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:27:23.528 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:27:23.528 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:27:23.528 -07 000000476 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:27:23.528 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:27:23.528 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 22:27:23.528 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:27:23.528 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:27:23.528 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:27:23.538 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:27:23.538 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:27:23.538 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:27:23.538 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:27:23.538 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 22:27:23.538 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 22:27:23.548 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 22:27:23.548 -07 000000476 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 22:27:23.558 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 452 452 217 217 28324 150\n [Camera]
17-03-17 22:27:23.748 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:27:23.868 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 63, FrontChillerTemperature: 4.014009,
17-03-17 22:27:24.208 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 644
17-03-17 22:27:24.208 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 644
17-03-17 22:27:24.208 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:27:24.208 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:27:24.208 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 22:27:24.208 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 644
17-03-17 22:27:24.208 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 644
17-03-17 22:27:24.208 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:27:24.208 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:27:24.208 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 22:27:24.398 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28324 837
17-03-17 22:27:24.548 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning grn on 987
17-03-17 22:27:24.588 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 379 ms.
17-03-17 22:27:24.588 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-17 22:27:24.588 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:27:24.588 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 380 ms.
17-03-17 22:27:24.588 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-17 22:27:24.588 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:27:24.588 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 22:27:24.588 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 22:27:24.598 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 22:27:24.608 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 22:27:24.768 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1204
17-03-17 22:27:24.768 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1204
17-03-17 22:27:24.768 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:27:24.768 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:27:24.768 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-17 22:27:24.768 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1204
17-03-17 22:27:24.768 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1204
17-03-17 22:27:24.768 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:27:24.768 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:27:24.768 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 22:27:24.958 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP 1397
17-03-17 22:27:24.958 -07 000000431 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:27:24.958 -07 000000610 INF: FPGA: 'CAMDBLSNAP 452 452 217 217 28324 150' command took 2 ms to send, 1394 ms to get response, and 1409 ms overall
17-03-17 22:27:24.958 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 22:27:24.958 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.349609375, Z-Position -0.128848281523252. ------
17-03-17 22:27:24.958 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:27:24.958 -07 000000012 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.13540 mm
17-03-17 22:27:24.958 -07 000000012 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:27:24.968 -07 000000431 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-17 22:27:24.968 -07 000000431 INF: Y Motor: Moving to 73.1926 mm, started at 72.3496 mm, delta = 0.8430 mm
17-03-17 22:27:24.968 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:27:25.158 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 388 ms.
17-03-17 22:27:25.158 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 22:27:25.158 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:27:25.158 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 392 ms.
17-03-17 22:27:25.158 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 22:27:25.158 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:27:25.158 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:27:25.168 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 22:27:25.168 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 22:27:25.168 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 22:27:25.178 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:27:25.178 -07 000000438 INF: FPGA: Recv YRDPOS 148173
17-03-17 22:27:25.178 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 91 ms to get response, and 214 ms overall
17-03-17 22:27:25.178 -07 000000431 INF: Y Motor: Encoder = 148173 = motor step 115760.2 = 72.3501 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:27:25.178 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 217 ms to get response, and 218 ms overall
17-03-17 22:27:25.178 -07 000000438 INF: Z Motor: Entering MoveAbsStepped (DAC = 29577, sync = True, waitForSettling = False)
17-03-17 22:27:25.178 -07 000000438 INF: Z Motor: Moving to -0.135395 mm, started at -0.128848 mm, distance = -6.55 um
17-03-17 22:27:25.178 -07 000000501 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:27:25.188 -07 000000438 INF: FPGA: Xmit ZDACW 29577\n [Z Motor]
17-03-17 22:27:25.188 -07 000000476 INF: FPGA: Recv ZDACW
17-03-17 22:27:25.188 -07 000000431 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:27:25.188 -07 000000431 INF: Y Motor: Moving 1348 steps-27
17-03-17 22:27:25.198 -07 000000438 INF: FPGA: 'ZDACW 29577' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:27:25.198 -07 000000438 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:27:25.198 -07 000000476 INF: FPGA: Recv ZDACR 29577
17-03-17 22:27:25.208 -07 000000431 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:27:25.208 -07 000000438 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:27:25.208 -07 000000438 INF: Z Motor: MoveAbsStepped took 21 ms (did NOT wait for settling yet))
17-03-17 22:27:25.388 -07 000000438 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:27:25.388 -07 000000501 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 202 ms to get response, and 203 ms overall
17-03-17 22:27:25.578 -07 000000438 INF: FPGA: Recv YMVTILE
17-03-17 22:27:25.578 -07 000000431 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 393 ms overall
17-03-17 22:27:25.618 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:27:25.628 -07 000000476 INF: FPGA: Recv YRDPOS 149865
17-03-17 22:27:25.628 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:27:25.628 -07 000000431 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:27:25.628 -07 000000431 INF: Y Motor: Position error before settling (table move) = -33 encoder counts (-0.016 mm)
17-03-17 22:27:25.628 -07 000000431 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.843 mm, average velocity = 2.140 mm/sec
17-03-17 22:27:26.578 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:27:26.578 -07 000000501 INF: FPGA: Recv YRDPOS 149865
17-03-17 22:27:26.588 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:27:26.588 -07 000000431 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:27:26.608 -07 000000431 INF: Y Motor: After move to 73.192604, error = -0.016335, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:27:26.608 -07 000000431 INF: Y Motor: Position error after settling (table move) = -33 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:27:26.608 -07 000000431 INF: Y Motor: Moved to 73.1763 after 1640 ms (table move)
17-03-17 22:27:26.608 -07 000000012 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135395 mm (DAC = 29577)
17-03-17 22:27:26.608 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:27:26.618 -07 000000424 INF: FPGA: Recv ZSGSRD 30367
17-03-17 22:27:26.618 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 22:27:26.618 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:27:26.618 -07 000000459 INF: FPGA: Recv ZSGSRD 30363
17-03-17 22:27:26.628 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:27:26.628 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:27:26.628 -07 000000424 INF: FPGA: Recv ZSGSRD 30362
17-03-17 22:27:26.638 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:27:26.638 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:27:26.638 -07 000000438 INF: FPGA: Recv ZSGSRD 30366
17-03-17 22:27:26.648 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:27:26.648 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:27:26.648 -07 000000501 INF: FPGA: Recv ZSGSRD 30371
17-03-17 22:27:26.658 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:27:26.658 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:27:26.658 -07 000000424 INF: FPGA: Recv ZSGSRD 30372
17-03-17 22:27:26.668 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:27:26.668 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:27:26.668 -07 000000459 INF: FPGA: Recv ZSGSRD 30362
17-03-17 22:27:26.678 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:27:26.678 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:27:26.678 -07 000000424 INF: FPGA: Recv ZSGSRD 30366
17-03-17 22:27:26.688 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:27:26.688 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:27:26.688 -07 000000431 INF: FPGA: Recv ZSGSRD 30364
17-03-17 22:27:26.698 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:27:26.698 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:27:26.698 -07 000000424 INF: FPGA: Recv ZSGSRD 30365
17-03-17 22:27:26.708 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:27:26.708 -07 000000012 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:27:26.708 -07 000000431 INF: FPGA: Recv ZPIEZORD 26389
17-03-17 22:27:26.718 -07 000000012 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:27:26.718 -07 000000012 INF: Z Motor: Piezo is near 36.4 V (nominally 0 to 100 V), expect near 45.1 V, since DAC is at 4.513 V. Piezo Error = -8.8 V.
17-03-17 22:27:26.718 -07 000000012 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.4 um, Read 10 ADC samples: Avg = 30366 (-134.6 uncal um), Error = 0.8 uncal um, Median = 30366 (-134.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 30362 (-134.6 uncal um), Max = 30372 (-134.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 22:27:26.718 -07 000000012 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30366, posNoise = 6, negNoise = 4
17-03-17 22:27:26.718 -07 000000012 INF: Z Motor: After move to -0.135395, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:27:26.718 -07 000000012 INF: Z Motor: Settle wait time = 1429 ms, measure time = 102 ms (allowed 150 ms), total time = 1531 ms
17-03-17 22:27:26.718 -07 000000012 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 22:27:26.768 -07 000000012 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1800 ms
17-03-17 22:27:26.768 -07 000000012 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:27:26.768 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:27:26.768 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:27:26.768 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:27:26.768 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:27:26.768 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:27:26.768 -07 000000431 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:27:26.768 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:27:26.768 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:27:26.778 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:27:26.778 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:27:26.788 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 22:27:26.788 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-17 22:27:26.798 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:27:26.838 -07 000000501 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:27:26.978 -07 000000459 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:27:26.978 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 62. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=994, R2=1021, Total=2015. Warn if over 250 bubbles per interval.
17-03-17 22:27:27.038 -07 000000501 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:27:27.038 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:27:27.038 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:27:27.038 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 22:27:27.078 -07 000000438 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:27:27.078 -07 000000482 INF: FPGA: Recv CAMSNAP
17-03-17 22:27:27.078 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 275 ms to get response, and 285 ms overall
17-03-17 22:27:27.158 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 22:27:27.158 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:27:27.158 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 22:27:27.158 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 22:27:27.178 -07 000000482 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:27:27.178 -07 000000438 INF: Autofocus start
17-03-17 22:27:27.178 -07 000000438 INF: MeasureProfile start
17-03-17 22:27:27.178 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:27:27.188 -07 000000482 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:27:27.188 -07 000000482 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:27:27.188 -07 000000438 INF: MeasureProfile done
17-03-17 22:27:27.188 -07 000000438 INF: X=32  Z correction [um]=0.1299841
17-03-17 22:27:27.188 -07 000000438 INF: Autofocus finished
17-03-17 22:27:27.388 -07 000000476 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:27:27.388 -07 000000482 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:27:27.388 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.17626953125, Z-position -0.135400977907848. ----------
17-03-17 22:27:27.388 -07 000000610 INF: Cycle	63	Tile	17	Exposure Settings		A	452	G	217	T	217	C	452
17-03-17 22:27:27.398 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28118, sync = True, waitForSettling = True)
17-03-17 22:27:27.398 -07 000000610 INF: Z Motor: Moving to -0.128716 mm, started at -0.135401 mm, distance = 6.69 um
17-03-17 22:27:27.398 -07 000000610 INF: FPGA: Xmit ZDACW 28118\n [Z Motor]
17-03-17 22:27:27.398 -07 000000424 INF: FPGA: Recv ZDACW
17-03-17 22:27:27.408 -07 000000610 INF: FPGA: 'ZDACW 28118' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:27:27.408 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:27:27.408 -07 000000459 INF: FPGA: Recv ZDACR 28118
17-03-17 22:27:27.418 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:27:27.418 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:27:27.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:27:27.568 -07 000000424 INF: FPGA: Recv ZSGSRD 29323
17-03-17 22:27:27.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:27:27.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:27:27.578 -07 000000459 INF: FPGA: Recv ZSGSRD 29333
17-03-17 22:27:27.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:27:27.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:27:27.588 -07 000000012 INF: FPGA: Recv ZSGSRD 29326
17-03-17 22:27:27.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:27:27.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:27:27.598 -07 000000459 INF: FPGA: Recv ZSGSRD 29319
17-03-17 22:27:27.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:27:27.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:27:27.608 -07 000000012 INF: FPGA: Recv ZSGSRD 29331
17-03-17 22:27:27.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:27:27.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:27:27.618 -07 000000424 INF: FPGA: Recv ZSGSRD 29325
17-03-17 22:27:27.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:27:27.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:27:27.628 -07 000000438 INF: FPGA: Recv ZSGSRD 29322
17-03-17 22:27:27.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:27:27.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:27:27.638 -07 000000576 INF: FPGA: Recv ZSGSRD 29330
17-03-17 22:27:27.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:27:27.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:27:27.648 -07 000000424 INF: FPGA: Recv ZSGSRD 29326
17-03-17 22:27:27.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:27:27.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:27:27.658 -07 000000501 INF: FPGA: Recv ZSGSRD 29328
17-03-17 22:27:27.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:27:27.668 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:27:27.668 -07 000000438 INF: FPGA: Recv ZPIEZORD 25016
17-03-17 22:27:27.678 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:27:27.678 -07 000000610 INF: Z Motor: Piezo is near 33.4 V (nominally 0 to 100 V), expect near 42.9 V, since DAC is at 4.291 V. Piezo Error = -9.5 V.
17-03-17 22:27:27.678 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.7 um, Read 10 ADC samples: Avg = 29326 (-127.9 uncal um), Error = 0.8 uncal um, Median = 29326 (-127.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 29319 (-127.9 uncal um), Max = 29333 (-128.0 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 22:27:27.678 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29326, posNoise = 7, negNoise = 7
17-03-17 22:27:27.678 -07 000000610 INF: Z Motor: After move to -0.128716, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:27:27.678 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 22:27:27.678 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:27:27.678 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:27:27.678 -07 000000459 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:27:27.678 -07 000000431 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:27:27.678 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:27:27.678 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:27:27.678 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:27:27.678 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:27:27.678 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:27:27.678 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:27:27.678 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:27:27.678 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:27:27.688 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:27:27.688 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:27:27.688 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:27:27.688 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:27:27.698 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 22:27:27.698 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 22:27:27.698 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 22:27:27.698 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 22:27:27.698 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 452 452 217 217 28295 150\n [Camera]
17-03-17 22:27:27.898 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:27:28.348 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 644
17-03-17 22:27:28.348 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 644
17-03-17 22:27:28.348 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:27:28.348 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 644
17-03-17 22:27:28.348 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 644
17-03-17 22:27:28.348 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:27:28.358 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:27:28.358 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 22:27:28.358 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:27:28.358 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 22:27:28.538 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28295 837
17-03-17 22:27:28.688 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP turning grn on 987
17-03-17 22:27:28.748 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 396 ms.
17-03-17 22:27:28.748 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 22:27:28.748 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:27:28.758 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 396 ms.
17-03-17 22:27:28.758 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:27:28.758 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 22:27:28.758 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 22:27:28.758 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:27:28.758 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:27:28.768 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-17 22:27:28.908 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1204
17-03-17 22:27:28.908 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1204
17-03-17 22:27:28.908 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:27:28.908 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1204
17-03-17 22:27:28.908 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1204
17-03-17 22:27:28.918 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:27:28.918 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:27:28.918 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-17 22:27:28.918 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:27:28.918 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 22:27:29.098 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP 1396
17-03-17 22:27:29.098 -07 000000424 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:27:29.098 -07 000000610 INF: FPGA: 'CAMDBLSNAP 452 452 217 217 28295 150' command took 4 ms to send, 1397 ms to get response, and 1404 ms overall
17-03-17 22:27:29.098 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 22:27:29.098 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.17626953125, Z-Position -0.128719797280417. ------
17-03-17 22:27:29.218 -07 000000438 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.13503 mm
17-03-17 22:27:29.218 -07 000000438 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:27:29.228 -07 000000012 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:27:29.228 -07 000000424 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-17 22:27:29.228 -07 000000424 INF: Y Motor: Moving to 74.0226 mm, started at 73.1763 mm, delta = 0.8463 mm
17-03-17 22:27:29.228 -07 000000476 INF: Z Motor: Entering MoveAbsStepped (DAC = 29497, sync = True, waitForSettling = False)
17-03-17 22:27:29.228 -07 000000476 INF: Z Motor: Moving to -0.135029 mm, started at -0.128720 mm, distance = -6.31 um
17-03-17 22:27:29.238 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:27:29.238 -07 000000012 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 22:27:29.248 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:27:29.248 -07 000000431 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 63, FrontChillerTemperature: 4.015368,
17-03-17 22:27:29.258 -07 000000476 INF: FPGA: Xmit ZDACW 29497\n [Z Motor]
17-03-17 22:27:29.268 -07 000000012 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:27:29.308 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 386 ms.
17-03-17 22:27:29.308 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 22:27:29.308 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:27:29.308 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 393 ms.
17-03-17 22:27:29.308 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 22:27:29.308 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:27:29.318 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:27:29.318 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:27:29.318 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 22:27:29.318 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-17 22:27:29.348 -07 000000382 INF: FPGA: Recv YRDPOS 149865
17-03-17 22:27:29.348 -07 000000382 INF: FPGA: Recv ZDACW
17-03-17 22:27:29.348 -07 000000476 INF: FPGA: 'ZDACW 29497' command took 0 ms to send, 84 ms to get response, and 114 ms overall
17-03-17 22:27:29.348 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 94 ms to get response, and 123 ms overall
17-03-17 22:27:29.348 -07 000000424 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:27:29.348 -07 000000424 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:27:29.348 -07 000000424 INF: Y Motor: Moving 1354 steps-33
17-03-17 22:27:29.368 -07 000000476 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:27:29.368 -07 000000382 INF: FPGA: Recv ZDACR 29497
17-03-17 22:27:29.378 -07 000000424 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:27:29.378 -07 000000476 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-17 22:27:29.378 -07 000000476 INF: Z Motor: MoveAbsStepped took 141 ms (did NOT wait for settling yet))
17-03-17 22:27:29.468 -07 000000382 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:27:29.468 -07 000000012 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 231 ms overall
17-03-17 22:27:29.748 -07 000000382 INF: FPGA: Recv YMVTILE
17-03-17 22:27:29.748 -07 000000424 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 402 ms overall
17-03-17 22:27:29.778 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:27:29.788 -07 000000012 INF: FPGA: Recv YRDPOS 151569
17-03-17 22:27:29.798 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:27:29.798 -07 000000424 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:27:29.798 -07 000000424 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-17 22:27:29.798 -07 000000424 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 402 ms, distance = 0.846 mm, average velocity = 2.105 mm/sec
17-03-17 22:27:30.748 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:27:30.748 -07 000000382 INF: FPGA: Recv YRDPOS 151569
17-03-17 22:27:30.758 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:27:30.758 -07 000000424 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:27:30.768 -07 000000424 INF: Y Motor: After move to 74.022606, error = -0.014305, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:27:30.768 -07 000000424 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:27:30.768 -07 000000424 INF: Y Motor: Moved to 74.0083 after 1548 ms (table move)
17-03-17 22:27:30.778 -07 000000438 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135029 mm (DAC = 29497)
17-03-17 22:27:30.778 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:27:30.778 -07 000000476 INF: FPGA: Recv ZSGSRD 30318
17-03-17 22:27:30.788 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:27:30.788 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:27:30.788 -07 000000459 INF: FPGA: Recv ZSGSRD 30308
17-03-17 22:27:30.798 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:27:30.798 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:27:30.798 -07 000000012 INF: FPGA: Recv ZSGSRD 30301
17-03-17 22:27:30.808 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:27:30.808 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:27:30.808 -07 000000476 INF: FPGA: Recv ZSGSRD 30318
17-03-17 22:27:30.818 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:27:30.818 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:27:30.818 -07 000000012 INF: FPGA: Recv ZSGSRD 30312
17-03-17 22:27:30.828 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:27:30.828 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:27:30.828 -07 000000012 INF: FPGA: Recv ZSGSRD 30302
17-03-17 22:27:30.838 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:27:30.838 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:27:30.838 -07 000000476 INF: FPGA: Recv ZSGSRD 30316
17-03-17 22:27:30.848 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:27:30.848 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:27:30.848 -07 000000424 INF: FPGA: Recv ZSGSRD 30307
17-03-17 22:27:30.858 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:27:30.858 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:27:30.858 -07 000000459 INF: FPGA: Recv ZSGSRD 30309
17-03-17 22:27:30.868 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:27:30.868 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:27:30.868 -07 000000459 INF: FPGA: Recv ZSGSRD 30308
17-03-17 22:27:30.878 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:27:30.878 -07 000000438 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:27:30.878 -07 000000382 INF: FPGA: Recv ZPIEZORD 26302
17-03-17 22:27:30.888 -07 000000438 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:27:30.888 -07 000000438 INF: Z Motor: Piezo is near 36.2 V (nominally 0 to 100 V), expect near 45.0 V, since DAC is at 4.501 V. Piezo Error = -8.8 V.
17-03-17 22:27:30.888 -07 000000438 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.0 um, Read 10 ADC samples: Avg = 30310 (-134.3 uncal um), Error = 0.8 uncal um, Median = 30308 (-134.2 uncal um), StdDev = 6 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 30301 (-134.2 uncal um), Max = 30318 (-134.3 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 22:27:30.888 -07 000000438 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30310, posNoise = 8, negNoise = 9
17-03-17 22:27:30.888 -07 000000438 INF: Z Motor: After move to -0.135029, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:27:30.888 -07 000000438 INF: Z Motor: Settle wait time = 1542 ms, measure time = 108 ms (allowed 150 ms), total time = 1650 ms
17-03-17 22:27:30.888 -07 000000438 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-17 22:27:30.938 -07 000000438 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1713 ms
17-03-17 22:27:30.938 -07 000000438 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:27:30.938 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:27:30.938 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:27:30.938 -07 000000476 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:27:30.938 -07 000000459 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:27:30.938 -07 000000012 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:27:30.938 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:27:30.938 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:27:30.938 -07 000000012 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:27:30.948 -07 000000012 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:27:30.948 -07 000000012 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:27:30.948 -07 000000012 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 22:27:30.948 -07 000000012 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 22:27:30.958 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:27:30.998 -07 000000438 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:27:31.198 -07 000000382 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:27:31.198 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:27:31.198 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:27:31.198 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 22:27:31.238 -07 000000476 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:27:31.238 -07 000000459 INF: FPGA: Recv CAMSNAP
17-03-17 22:27:31.238 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 284 ms overall
17-03-17 22:27:31.328 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 122 ms.
17-03-17 22:27:31.328 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:27:31.328 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:27:31.328 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 124 ms.
17-03-17 22:27:31.438 -07 000000382 INF: Autofocus start
17-03-17 22:27:31.438 -07 000000382 INF: MeasureProfile start
17-03-17 22:27:31.438 -07 000000476 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:27:31.438 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:27:31.448 -07 000000476 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:27:31.448 -07 000000476 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:27:31.448 -07 000000382 INF: MeasureProfile done
17-03-17 22:27:31.448 -07 000000382 INF: X=0  Z correction [um]=-0.02394831
17-03-17 22:27:31.448 -07 000000382 INF: Autofocus finished
17-03-17 22:27:31.648 -07 000000382 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:27:31.648 -07 000000476 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 192 ms to get response, and 203 ms overall
17-03-17 22:27:31.648 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.00830078125, Z-position -0.13504122202791. ----------
17-03-17 22:27:31.648 -07 000000610 INF: Cycle	63	Tile	18	Exposure Settings		A	452	G	217	T	217	C	452
17-03-17 22:27:31.658 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28005, sync = True, waitForSettling = True)
17-03-17 22:27:31.658 -07 000000610 INF: Z Motor: Moving to -0.128199 mm, started at -0.135041 mm, distance = 6.84 um
17-03-17 22:27:31.658 -07 000000610 INF: FPGA: Xmit ZDACW 28005\n [Z Motor]
17-03-17 22:27:31.658 -07 000000382 INF: FPGA: Recv ZDACW
17-03-17 22:27:31.668 -07 000000610 INF: FPGA: 'ZDACW 28005' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:27:31.668 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:27:31.668 -07 000000512 INF: FPGA: Recv ZDACR 28005
17-03-17 22:27:31.678 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:27:31.678 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:27:31.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:27:31.828 -07 000000438 INF: FPGA: Recv ZSGSRD 29243
17-03-17 22:27:31.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:27:31.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:27:31.838 -07 000000476 INF: FPGA: Recv ZSGSRD 29244
17-03-17 22:27:31.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:27:31.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:27:31.848 -07 000000438 INF: FPGA: Recv ZSGSRD 29252
17-03-17 22:27:31.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:27:31.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:27:31.858 -07 000000476 INF: FPGA: Recv ZSGSRD 29245
17-03-17 22:27:31.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:27:31.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:27:31.868 -07 000000438 INF: FPGA: Recv ZSGSRD 29248
17-03-17 22:27:31.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:27:31.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:27:31.878 -07 000000476 INF: FPGA: Recv ZSGSRD 29248
17-03-17 22:27:31.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:27:31.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:27:31.888 -07 000000459 INF: FPGA: Recv ZSGSRD 29251
17-03-17 22:27:31.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:27:31.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:27:31.898 -07 000000476 INF: FPGA: Recv ZSGSRD 29249
17-03-17 22:27:31.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:27:31.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:27:31.908 -07 000000438 INF: FPGA: Recv ZSGSRD 29244
17-03-17 22:27:31.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:27:31.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:27:31.918 -07 000000438 INF: FPGA: Recv ZSGSRD 29246
17-03-17 22:27:31.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:27:31.928 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:27:31.928 -07 000000438 INF: FPGA: Recv ZPIEZORD 24905
17-03-17 22:27:31.938 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:27:31.938 -07 000000610 INF: Z Motor: Piezo is near 33.2 V (nominally 0 to 100 V), expect near 42.7 V, since DAC is at 4.273 V. Piezo Error = -9.5 V.
17-03-17 22:27:31.938 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.2 um, Read 10 ADC samples: Avg = 29247 (-127.4 uncal um), Error = 0.8 uncal um, Median = 29247 (-127.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29243 (-127.4 uncal um), Max = 29252 (-127.5 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 22:27:31.938 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29247, posNoise = 5, negNoise = 4
17-03-17 22:27:31.938 -07 000000610 INF: Z Motor: After move to -0.128199, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:27:31.938 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 22:27:31.938 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:27:31.938 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:27:31.938 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:27:31.938 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:27:31.938 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:27:31.938 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:27:31.938 -07 000000459 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:27:31.938 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:27:31.938 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 22:27:31.938 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:27:31.938 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 22:27:31.938 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:27:31.938 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 22:27:31.938 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:27:31.938 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:27:31.948 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:27:31.948 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 22:27:31.948 -07 000000459 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 22:27:31.948 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 22:27:31.948 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 22:27:31.958 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 452 452 217 217 28181 150\n [Camera]
17-03-17 22:27:31.978 -07 000000475 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:27:31.978 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 62. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=994, R2=1021, Total=2015. Warn if over 250 bubbles per interval.
17-03-17 22:27:32.158 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:27:32.608 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 644
17-03-17 22:27:32.608 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 644
17-03-17 22:27:32.608 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:27:32.608 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 644
17-03-17 22:27:32.608 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 644
17-03-17 22:27:32.608 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:27:32.618 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:27:32.618 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 22:27:32.618 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:27:32.618 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 22:27:32.798 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28181 837
17-03-17 22:27:32.948 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning grn on 987
17-03-17 22:27:32.988 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 22:27:32.988 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 22:27:32.988 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:27:32.998 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:27:32.998 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 383 ms.
17-03-17 22:27:32.998 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 22:27:32.998 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:27:32.998 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:27:32.998 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 22:27:33.008 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 22:27:33.168 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1204
17-03-17 22:27:33.168 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1204
17-03-17 22:27:33.168 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:27:33.168 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1204
17-03-17 22:27:33.168 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1204
17-03-17 22:27:33.168 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:27:33.168 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2199785120, 0x0, 391868352) start.
17-03-17 22:27:33.168 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:27:33.168 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:27:33.178 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) start.
17-03-17 22:27:33.358 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP 1396
17-03-17 22:27:33.358 -07 000000424 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:27:33.358 -07 000000610 INF: FPGA: 'CAMDBLSNAP 452 452 217 217 28181 150' command took 2 ms to send, 1397 ms to get response, and 1403 ms overall
17-03-17 22:27:33.358 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 22:27:33.358 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.00830078125, Z-Position -0.128212284521218. ------
17-03-17 22:27:33.368 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:27:33.368 -07 000000475 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.13466 mm
17-03-17 22:27:33.368 -07 000000475 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:27:33.368 -07 000000424 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-17 22:27:33.368 -07 000000424 INF: Y Motor: Moving to 74.8526 mm, started at 74.0083 mm, delta = 0.8443 mm
17-03-17 22:27:33.368 -07 000000476 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:27:33.368 -07 000000382 INF: Z Motor: Entering MoveAbsStepped (DAC = 29416, sync = True, waitForSettling = False)
17-03-17 22:27:33.368 -07 000000382 INF: Z Motor: Moving to -0.134658 mm, started at -0.128212 mm, distance = -6.45 um
17-03-17 22:27:33.378 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 22:27:33.378 -07 000000382 INF: FPGA: Xmit ZDACW 29416\n [Z Motor]
17-03-17 22:27:33.378 -07 000000476 INF: FPGA: Recv ZDACW
17-03-17 22:27:33.388 -07 000000382 INF: FPGA: 'ZDACW 29416' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:27:33.388 -07 000000512 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:27:33.398 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:27:33.398 -07 000000627 INF: FPGA: Recv YRDPOS 151570
17-03-17 22:27:33.408 -07 000000382 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:27:33.408 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 32 ms overall
17-03-17 22:27:33.408 -07 000000424 INF: Y Motor: Encoder = 151570 = motor step 118414.1 = 74.0088 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:27:33.408 -07 000000476 INF: FPGA: Recv ZDACR 29416
17-03-17 22:27:33.408 -07 000000424 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:27:33.408 -07 000000424 INF: Y Motor: Moving 1350 steps-29
17-03-17 22:27:33.418 -07 000000382 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:27:33.418 -07 000000382 INF: Z Motor: MoveAbsStepped took 41 ms (did NOT wait for settling yet))
17-03-17 22:27:33.418 -07 000000424 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:27:33.578 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2199785120, 0x0, 391868352) end. Duration was 405 ms.
17-03-17 22:27:33.578 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-17 22:27:33.578 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:27:33.578 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) end. Duration was 404 ms.
17-03-17 22:27:33.578 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-17 22:27:33.578 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:27:33.578 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:27:33.578 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-17 22:27:33.588 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:27:33.588 -07 000000012 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:27:33.588 -07 000000512 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 212 ms overall
17-03-17 22:27:33.588 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 418 ms.
17-03-17 22:27:33.788 -07 000000569 INF: FPGA: Recv YMVTILE
17-03-17 22:27:33.788 -07 000000424 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 383 ms overall
17-03-17 22:27:33.818 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:27:33.818 -07 000000382 INF: FPGA: Recv YRDPOS 153257
17-03-17 22:27:33.828 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:27:33.828 -07 000000424 INF: Y Motor: Encoder = 153257 = motor step 119732.0 = 74.8325 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:27:33.828 -07 000000424 INF: Y Motor: Position error before settling (table move) = -41 encoder counts (-0.020 mm)
17-03-17 22:27:33.828 -07 000000424 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 383 ms, distance = 0.844 mm, average velocity = 2.204 mm/sec
17-03-17 22:27:34.718 -07 000000476 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 63, FrontChillerTemperature: 4.001704,
17-03-17 22:27:34.778 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:27:34.778 -07 000000012 INF: FPGA: Recv YRDPOS 153257
17-03-17 22:27:34.788 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:27:34.788 -07 000000424 INF: Y Motor: Encoder = 153257 = motor step 119732.0 = 74.8325 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:27:34.798 -07 000000424 INF: Y Motor: After move to 74.852608, error = -0.020088, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:27:34.798 -07 000000424 INF: Y Motor: Position error after settling (table move) = -41 encoder counts (-0.020 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:27:34.798 -07 000000424 INF: Y Motor: Moved to 74.8325 after 1429 ms (table move)
17-03-17 22:27:34.808 -07 000000475 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134658 mm (DAC = 29416)
17-03-17 22:27:34.808 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:27:34.808 -07 000000459 INF: FPGA: Recv ZSGSRD 30259
17-03-17 22:27:34.818 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:27:34.818 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:27:34.818 -07 000000476 INF: FPGA: Recv ZSGSRD 30246
17-03-17 22:27:34.828 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:27:34.828 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:27:34.828 -07 000000512 INF: FPGA: Recv ZSGSRD 30244
17-03-17 22:27:34.838 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:27:34.838 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:27:34.838 -07 000000012 INF: FPGA: Recv ZSGSRD 30251
17-03-17 22:27:34.848 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:27:34.848 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:27:34.848 -07 000000476 INF: FPGA: Recv ZSGSRD 30239
17-03-17 22:27:34.858 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:27:34.858 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:27:34.858 -07 000000459 INF: FPGA: Recv ZSGSRD 30256
17-03-17 22:27:34.868 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:27:34.868 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:27:34.868 -07 000000627 INF: FPGA: Recv ZSGSRD 30257
17-03-17 22:27:34.878 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:27:34.878 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:27:34.878 -07 000000512 INF: FPGA: Recv ZSGSRD 30257
17-03-17 22:27:34.888 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:27:34.888 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:27:34.888 -07 000000012 INF: FPGA: Recv ZSGSRD 30246
17-03-17 22:27:34.898 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:27:34.898 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:27:34.898 -07 000000012 INF: FPGA: Recv ZSGSRD 30242
17-03-17 22:27:34.908 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:27:34.908 -07 000000475 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:27:34.908 -07 000000476 INF: FPGA: Recv ZPIEZORD 26240
17-03-17 22:27:34.918 -07 000000475 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:27:34.918 -07 000000475 INF: Z Motor: Piezo is near 36.1 V (nominally 0 to 100 V), expect near 44.9 V, since DAC is at 4.489 V. Piezo Error = -8.8 V.
17-03-17 22:27:34.918 -07 000000475 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.7 um, Read 10 ADC samples: Avg = 30250 (-133.9 uncal um), Error = 0.8 uncal um, Median = 30248 (-133.9 uncal um), StdDev = 7 (0.0 uncal um), Range = 20 (0.1 uncal um), Min = 30239 (-133.8 uncal um), Max = 30259 (-133.9 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 11 (0.1 uncal um)
17-03-17 22:27:34.918 -07 000000475 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30250, posNoise = 9, negNoise = 11
17-03-17 22:27:34.918 -07 000000475 INF: Z Motor: After move to -0.134658, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:27:34.918 -07 000000475 INF: Z Motor: Settle wait time = 1431 ms, measure time = 110 ms (allowed 150 ms), total time = 1541 ms
17-03-17 22:27:34.918 -07 000000475 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-17 22:27:34.958 -07 000000475 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1585 ms
17-03-17 22:27:34.958 -07 000000475 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:27:34.958 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:27:34.958 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:27:34.958 -07 000000476 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:27:34.958 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:27:34.958 -07 000000475 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:27:34.958 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:27:34.958 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:27:34.958 -07 000000475 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:27:34.968 -07 000000475 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:27:34.968 -07 000000475 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:27:34.968 -07 000000475 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 22:27:34.968 -07 000000475 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-17 22:27:34.978 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:27:35.018 -07 000000459 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:27:35.218 -07 000000512 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:27:35.218 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:27:35.218 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:27:35.218 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 594000200, 0x0, 559484976) start.
17-03-17 22:27:35.258 -07 000000512 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:27:35.258 -07 000000459 INF: FPGA: Recv CAMSNAP
17-03-17 22:27:35.258 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 284 ms overall
17-03-17 22:27:35.338 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 594000200, 0x0, 559484976) end. Duration was 113 ms.
17-03-17 22:27:35.338 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:27:35.338 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:27:35.338 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 116 ms.
17-03-17 22:27:35.358 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:27:35.358 -07 000000476 INF: Autofocus start
17-03-17 22:27:35.358 -07 000000476 INF: MeasureProfile start
17-03-17 22:27:35.358 -07 000000627 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:27:35.368 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 22:27:35.368 -07 000000512 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:27:35.368 -07 000000476 INF: MeasureProfile done
17-03-17 22:27:35.368 -07 000000476 INF: X=-16  Z correction [um]=-0.08128808
17-03-17 22:27:35.368 -07 000000476 INF: Autofocus finished
17-03-17 22:27:35.568 -07 000000459 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:27:35.568 -07 000000512 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:27:35.568 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83251953125, Z-position -0.134655769299404. ----------
17-03-17 22:27:35.568 -07 000000610 INF: Cycle	63	Tile	19	Exposure Settings		A	452	G	217	T	217	C	452
17-03-17 22:27:35.578 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27911, sync = True, waitForSettling = True)
17-03-17 22:27:35.578 -07 000000610 INF: Z Motor: Moving to -0.127768 mm, started at -0.134656 mm, distance = 6.89 um
17-03-17 22:27:35.578 -07 000000610 INF: FPGA: Xmit ZDACW 27911\n [Z Motor]
17-03-17 22:27:35.578 -07 000000475 INF: FPGA: Recv ZDACW
17-03-17 22:27:35.588 -07 000000610 INF: FPGA: 'ZDACW 27911' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:27:35.588 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:27:35.588 -07 000000012 INF: FPGA: Recv ZDACR 27911
17-03-17 22:27:35.598 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:27:35.598 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:27:35.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:27:35.748 -07 000000512 INF: FPGA: Recv ZSGSRD 29181
17-03-17 22:27:35.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:27:35.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:27:35.758 -07 000000627 INF: FPGA: Recv ZSGSRD 29176
17-03-17 22:27:35.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:27:35.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:27:35.768 -07 000000512 INF: FPGA: Recv ZSGSRD 29177
17-03-17 22:27:35.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:27:35.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:27:35.778 -07 000000627 INF: FPGA: Recv ZSGSRD 29180
17-03-17 22:27:35.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:27:35.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:27:35.788 -07 000000512 INF: FPGA: Recv ZSGSRD 29180
17-03-17 22:27:35.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:27:35.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:27:35.798 -07 000000512 INF: FPGA: Recv ZSGSRD 29180
17-03-17 22:27:35.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:27:35.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:27:35.808 -07 000000459 INF: FPGA: Recv ZSGSRD 29181
17-03-17 22:27:35.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:27:35.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:27:35.818 -07 000000512 INF: FPGA: Recv ZSGSRD 29184
17-03-17 22:27:35.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:27:35.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:27:35.828 -07 000000459 INF: FPGA: Recv ZSGSRD 29177
17-03-17 22:27:35.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:27:35.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:27:35.838 -07 000000476 INF: FPGA: Recv ZSGSRD 29175
17-03-17 22:27:35.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:27:35.848 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:27:35.848 -07 000000475 INF: FPGA: Recv ZPIEZORD 24842
17-03-17 22:27:35.858 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:27:35.858 -07 000000610 INF: Z Motor: Piezo is near 33.1 V (nominally 0 to 100 V), expect near 42.6 V, since DAC is at 4.259 V. Piezo Error = -9.5 V.
17-03-17 22:27:35.858 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.8 um, Read 10 ADC samples: Avg = 29179 (-127.0 uncal um), Error = 0.8 uncal um, Median = 29180 (-127.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29175 (-127.0 uncal um), Max = 29184 (-127.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 22:27:35.858 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29179, posNoise = 5, negNoise = 4
17-03-17 22:27:35.858 -07 000000610 INF: Z Motor: After move to -0.127768, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:27:35.858 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 22:27:35.858 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:27:35.858 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:27:35.858 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:27:35.858 -07 000000475 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:27:35.858 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:27:35.858 -07 000000476 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:27:35.858 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:27:35.868 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 3 ms.
17-03-17 22:27:35.868 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:27:35.868 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:27:35.868 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:27:35.868 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:27:35.868 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 22:27:35.868 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:27:35.868 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 22:27:35.868 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:27:35.878 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 22:27:35.878 -07 000000476 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 22:27:35.878 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 22:27:35.878 -07 000000475 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 22:27:35.878 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 452 452 217 217 28088 150\n [Camera]
17-03-17 22:27:36.078 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP turning red on 193
17-03-17 22:27:36.528 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 644
17-03-17 22:27:36.528 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 644
17-03-17 22:27:36.528 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:27:36.528 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:27:36.528 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-17 22:27:36.538 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 644
17-03-17 22:27:36.538 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 644
17-03-17 22:27:36.538 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:27:36.538 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:27:36.538 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-17 22:27:36.718 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28088 837
17-03-17 22:27:36.868 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning grn on 987
17-03-17 22:27:36.928 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 395 ms.
17-03-17 22:27:36.928 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 22:27:36.928 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:27:36.928 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 396 ms.
17-03-17 22:27:36.928 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 22:27:36.928 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:27:36.928 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:27:36.928 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 22:27:36.938 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:27:36.938 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-17 22:27:36.978 -07 000000476 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:27:36.978 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 62. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=994, R2=1021, Total=2015. Warn if over 250 bubbles per interval.
17-03-17 22:27:37.088 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1204
17-03-17 22:27:37.088 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1204
17-03-17 22:27:37.088 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:27:37.088 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:27:37.088 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) start.
17-03-17 22:27:37.088 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1204
17-03-17 22:27:37.098 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1204
17-03-17 22:27:37.098 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:27:37.098 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:27:37.098 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 22:27:37.278 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP 1397
17-03-17 22:27:37.278 -07 000000012 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:27:37.278 -07 000000610 INF: FPGA: 'CAMDBLSNAP 452 452 217 217 28088 150' command took 2 ms to send, 1399 ms to get response, and 1404 ms overall
17-03-17 22:27:37.498 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) end. Duration was 402 ms.
17-03-17 22:27:37.498 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 22:27:37.498 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:27:37.498 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 402 ms.
17-03-17 22:27:37.498 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 22:27:37.498 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:27:37.498 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:27:37.498 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 22:27:37.498 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-17 22:27:37.498 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-17 22:27:37.508 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-17 22:27:37.548 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 42 ms.
17-03-17 22:27:37.548 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-17 22:27:37.588 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 42 ms.
17-03-17 22:27:37.708 -07 000000610 INF: Enabling Skipping AutoFocus in the next 5 cycles.
17-03-17 22:27:37.718 -07 000000610 INF: Imaging Cycle 63: ScanTilesCommand Cycle 63 time end. Duration was 160280 ms.
17-03-17 22:27:37.718 -07 000000610 INF: =================== Cycle #63 ===================
17-03-17 22:27:37.718 -07 000000610 INF: ===================  ===================
17-03-17 22:27:37.718 -07 000000547 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-17 22:27:37.718 -07 000000476 INF: FPGA: Recv EXLED1ADCR 26
17-03-17 22:27:37.728 -07 000000547 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:27:37.728 -07 000000547 INF: GreenLED: Using Green data: Photodiode ADC 26 --> 0.0 mW (old method), or 1.9 mW (new method). Difference = 1.9 mW
17-03-17 22:27:37.728 -07 000000547 INF: Predictive Diagnostic Log Cycle Entry Metrics: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 63, FrontChillerTemperature: 4.001704, FrontChillerHeatSinkTemperature: 0.407199, AmbientTemperature: 18.95252, FlowCellCompartmentTemperature: 21.99544, FlowCellTargetTemperature: 22, FlowCellHeatSinkTemperature: 18.75697, GreenLEDSensorTemperature: 25.93701, PhotodiodePowerAdcGreen: 26, PhotodiodePowerMwGreen: 1.927049
17-03-17 22:27:37.768 -07 000000610 INF: Y-Drift Offset assigned 0.002126916.