17-03-17 22:27:37.818 -07 000000610 INF: =================== Cycle #64 ===================
17-03-17 22:27:37.828 -07 000000610 INF: Y Motor: Entering MoveAbsStepped (target = 120609 steps, sync = True, waitForSettling = True)
17-03-17 22:27:37.828 -07 000000610 INF: Y Motor: Moving to 75.3806 mm, started at 74.8325 mm, delta = 0.5481 mm
17-03-17 22:27:37.828 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:27:37.828 -07 000000627 INF: FPGA: Recv YRDPOS 153257
17-03-17 22:27:37.838 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:27:37.838 -07 000000610 INF: Y Motor: Encoder = 153257 = motor step 119732.0 = 74.8325 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:27:37.838 -07 000000610 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = 0.5280 mm (844.8 steps). UsingTableMove = False
17-03-17 22:27:37.838 -07 000000610 INF: Y Motor: Moving to 154379 encoder counts
17-03-17 22:27:37.838 -07 000000610 INF: FPGA: Xmit YMVTO 154379\n [Y Motor]
17-03-17 22:27:37.948 -07 000000424 INF: FPGA: Recv YMVTO 154377 872
17-03-17 22:27:37.948 -07 000000610 INF: FPGA: 'YMVTO 154379' command took 0 ms to send, 106 ms to get response, and 116 ms overall
17-03-17 22:27:37.948 -07 000000610 INF: Y Motor: Position error before settling = -2 encoder counts (-0.001 mm)
17-03-17 22:27:37.948 -07 000000610 INF: Y Motor: To move from 74.833 to 75.381 (0.548 mm) should take 877 steps, but required 872 steps (0.545 mm). Slippage = -0.003 mm (-0.01%).
17-03-17 22:27:37.948 -07 000000610 INF: Y Motor: FPGA move command 'YMVTO 154379' took 116 ms, distance = 0.548 mm, average velocity = 4.725 mm/sec
17-03-17 22:27:40.078 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 64, FrontChillerTemperature: 3.999021,
17-03-17 22:27:40.948 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:27:40.948 -07 000000438 INF: FPGA: Recv YRDPOS 154380
17-03-17 22:27:40.958 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:27:40.958 -07 000000610 INF: Y Motor: Encoder = 154380 = motor step 120609.4 = 75.3809 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:27:40.978 -07 000000610 INF: Y Motor: After move to 75.380580, error = 0.000279, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:27:40.978 -07 000000610 INF: Y Motor: Position error after settling = 1 encoder counts (0.000 mm), Delta during settling = 3 counts (0.001 mm)
17-03-17 22:27:40.978 -07 000000610 INF: Y Motor: Moved to 75.3809 after 3151 ms
17-03-17 22:27:40.978 -07 000000610 INF: =================== Cycle #64, Flow Cell Temp 60° ===================
17-03-17 22:27:40.988 -07 000000610 INF: =================== Cycle #64, Flow Cell Temp 60°, FC temperature to 60° ===================
17-03-17 22:27:40.988 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 60000000\n [FlowCellTempControl]
17-03-17 22:27:40.988 -07 000000547 INF: FPGA: Recv TEC2TEMP 
17-03-17 22:27:40.998 -07 000000610 INF: FPGA: 'TEC2TEMP 0 60000000' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:27:40.998 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 22:27:40.998 -07 000000626 INF: FPGA: Recv TEC2EN 
17-03-17 22:27:41.008 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:27:41.008 -07 000000610 INF: =================== Cycle #64, Flow Cell Temp 60° ===================
17-03-17 22:27:41.008 -07 000000610 INF: =================== Cycle #64 ===================
17-03-17 22:27:41.008 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 22:27:41.008 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 22:27:41.028 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-17 22:27:41.028 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 24 to 3. Moving 3 positions.
17-03-17 22:27:41.028 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 22:27:41.328 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 22:27:41.348 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-17 22:27:41.348 -07 000000610 INF: ReagentValve: Move+ from 24 to 3 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-17 22:27:41.398 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 22:27:41.418 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 22:27:41.418 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 22:27:41.518 -07 000000610 INF: =================== Cycle #64, Pumping Reagent PR2 (3) ===================
17-03-17 22:27:41.518 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-17 22:27:41.518 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:27:41.548 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 22:27:41.548 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 22:27:41.548 -07 000000610 INF: =================== Cycle #64, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 22:27:41.678 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-17 22:27:41.718 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:27:41.978 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:27:41.978 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 63. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=994, R2=1021, Total=2015. Warn if over 250 bubbles per interval.
17-03-17 22:27:44.848 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:27:44.878 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:27:45.298 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:27:45.328 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:27:45.458 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 64, FrontChillerTemperature: 4.011254,
17-03-17 22:27:45.748 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:27:45.778 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:27:45.778 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-17 22:27:45.778 -07 000000610 INF: =================== Cycle #64, Pumping Reagent PR2 (3) ===================
17-03-17 22:27:45.908 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:27:45.938 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 22:27:45.938 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 22:27:46.068 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:27:46.098 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 22:27:46.098 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 22:27:46.098 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 22:27:46.228 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 22:27:46.258 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:27:46.688 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:27:46.718 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:27:46.718 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 22:27:46.718 -07 000000610 INF: =================== Cycle #64 ===================
17-03-17 22:27:46.978 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 7 R1 7
17-03-17 22:27:46.978 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 63. Bubbles during last 5000 ms interval: R1=7, R2=7, Total=14. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1001, R2=1028, Total=2029. Warn if over 250 bubbles per interval.
17-03-17 22:27:47.938 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 22:27:47.938 -07 000000610 INF: ReagentValve: Go to position 4 - PumpToFlowcell start
17-03-17 22:27:47.938 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 22:27:47.958 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 22:27:47.958 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 3 to 4. Moving 1 positions.
17-03-17 22:27:47.958 -07 000000610 INF: ReagentValve: Xmit +04\r
17-03-17 22:27:48.088 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 22:27:48.108 -07 000000610 INF: ReagentValve: Recv 00CD\r
17-03-17 22:27:48.108 -07 000000610 INF: ReagentValve: Move+ from 3 to 4 took 205 steps, expected 204. Error = 1 steps (0.5%)
17-03-17 22:27:48.158 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 22:27:48.178 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-17 22:27:48.178 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 22:27:48.278 -07 000000610 INF: =================== Cycle #64, Pumping Reagent CMS (4) ===================
17-03-17 22:27:48.278 -07 000000610 INF: LanePump: Pumping from 4, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 22:27:48.278 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:27:48.308 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 22:27:48.308 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 22:27:48.308 -07 000000610 INF: =================== Cycle #64, Pumping Reagent CMS (4), Aspirating port InputPort ===================
17-03-17 22:27:48.438 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 22:27:48.478 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:27:49.918 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:27:49.948 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:27:50.368 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:27:50.398 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:27:50.398 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-17 22:27:50.398 -07 000000610 INF: =================== Cycle #64, Pumping Reagent CMS (4) ===================
17-03-17 22:27:50.528 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:27:50.558 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 22:27:50.558 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 22:27:50.688 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:27:50.718 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 22:27:50.718 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 22:27:50.718 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 22:27:50.818 -07 000000431 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 64, FrontChillerTemperature: 4.024884,
17-03-17 22:27:50.848 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 22:27:50.878 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:27:51.308 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:27:51.338 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:27:51.338 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 22:27:51.338 -07 000000610 INF: =================== Cycle #64 ===================
17-03-17 22:27:51.978 -07 000000431 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 6 R1 4
17-03-17 22:27:51.978 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 63. Bubbles during last 5000 ms interval: R1=4, R2=6, Total=10. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1005, R2=1034, Total=2039. Warn if over 250 bubbles per interval.
17-03-17 22:27:52.558 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 22:27:52.558 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 22:27:52.558 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 22:27:52.578 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-17 22:27:52.578 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 4 to 3. Moving 1 positions.
17-03-17 22:27:52.578 -07 000000610 INF: ReagentValve: Xmit -03\r
17-03-17 22:27:52.728 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 22:27:52.748 -07 000000610 INF: ReagentValve: Recv 00E1\r
17-03-17 22:27:52.748 -07 000000610 INF: ReagentValve: Move- from 4 to 3 took 225 steps, expected 204. Error = 21 steps (10.3%)
17-03-17 22:27:52.798 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 22:27:52.818 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 22:27:52.818 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 22:27:52.918 -07 000000610 INF: =================== Cycle #64, Pumping Reagent PR2 (3) ===================
17-03-17 22:27:52.918 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 22:27:52.918 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:27:52.948 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 22:27:52.948 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 22:27:52.948 -07 000000610 INF: =================== Cycle #64, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 22:27:53.078 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 22:27:53.118 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:27:53.988 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:27:54.018 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:27:54.018 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-17 22:27:54.018 -07 000000610 INF: =================== Cycle #64, Pumping Reagent PR2 (3) ===================
17-03-17 22:27:54.148 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:27:54.178 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 22:27:54.178 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 22:27:54.308 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:27:54.338 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 22:27:54.338 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 22:27:54.338 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 22:27:54.468 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 22:27:54.498 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:27:54.928 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:27:54.958 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:27:54.958 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 22:27:54.958 -07 000000610 INF: =================== Cycle #64 ===================
17-03-17 22:27:54.968 -07 000000382 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 22:27:54.968 -07 000000478 INF: WaitCommand(10000) start
17-03-17 22:27:54.968 -07 000000382 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 22:27:56.178 -07 000000382 INF: AsyncDelayTimer waited 1209ms
17-03-17 22:27:56.178 -07 000000382 INF: LanePump: Xmit /1?\r
17-03-17 22:27:56.188 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 64, FrontChillerTemperature: 4.004458,
17-03-17 22:27:56.208 -07 000000382 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 22:27:56.208 -07 000000382 INF: LanePump: Current Position of Pump is: 1110
17-03-17 22:27:56.338 -07 000000382 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 22:27:56.378 -07 000000382 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:27:56.978 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 1
17-03-17 22:27:56.978 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 63. Bubbles during last 5000 ms interval: R1=1, R2=1, Total=2. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1006, R2=1035, Total=2041. Warn if over 250 bubbles per interval.
17-03-17 22:27:57.908 -07 000000382 INF: LanePump: Xmit /1Q\r
17-03-17 22:27:57.938 -07 000000382 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:27:58.358 -07 000000382 INF: LanePump: Xmit /1Q\r
17-03-17 22:27:58.388 -07 000000382 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:27:58.388 -07 000000382 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-17 22:27:58.388 -07 000000382 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 22:27:58.388 -07 000000382 INF: ===================  ===================
17-03-17 22:28:01.558 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 64, FrontChillerTemperature: 4.014009,
17-03-17 22:28:01.978 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:28:01.978 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 63. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1006, R2=1035, Total=2041. Warn if over 250 bubbles per interval.
17-03-17 22:28:04.978 -07 000000478 INF: WaitCommand(10000) end
17-03-17 22:28:04.978 -07 000000610 INF: =================== Cycle #64, Pumping Reagent PR2 (3) ===================
17-03-17 22:28:04.978 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 250 µL, calling command Pumping to Flow Cell #1
17-03-17 22:28:04.978 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:28:05.008 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 22:28:05.008 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 22:28:05.008 -07 000000610 INF: =================== Cycle #64, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 22:28:05.138 -07 000000610 INF: LanePump: Xmit /1V400IP1500R\r
17-03-17 22:28:05.178 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:28:06.928 -07 000000627 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 64, FrontChillerTemperature: 3.973092,
17-03-17 22:28:06.978 -07 000000478 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 2 R1 1
17-03-17 22:28:06.978 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 63. Bubbles during last 5000 ms interval: R1=1, R2=2, Total=3. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1007, R2=1037, Total=2044. Warn if over 250 bubbles per interval.
17-03-17 22:28:11.308 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:28:11.338 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:28:11.758 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:28:11.788 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:28:11.978 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 7 R1 8
17-03-17 22:28:11.978 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 63. Bubbles during last 5000 ms interval: R1=8, R2=7, Total=15. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1015, R2=1044, Total=2059. Warn if over 250 bubbles per interval.
17-03-17 22:28:12.208 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:28:12.238 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:28:12.298 -07 000000627 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 64, FrontChillerTemperature: 3.994908,
17-03-17 22:28:12.658 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:28:12.688 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:28:13.108 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:28:13.138 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:28:13.138 -07 000000610 INF: LanePump: Waited 7959 ms for pump motion to complete
17-03-17 22:28:13.138 -07 000000610 INF: =================== Cycle #64, Pumping Reagent PR2 (3) ===================
17-03-17 22:28:13.268 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:28:13.298 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 22:28:13.298 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 22:28:13.428 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:28:13.458 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 22:28:13.458 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 22:28:13.458 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 22:28:13.588 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 22:28:13.618 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:28:14.048 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:28:14.078 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:28:14.078 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 22:28:14.078 -07 000000610 INF: =================== Cycle #64 ===================
17-03-17 22:28:15.298 -07 000000610 INF: AsyncDelayTimer waited 1218ms
17-03-17 22:28:15.298 -07 000000610 INF: ReagentValve: Go to position 1 - PumpToFlowcell start
17-03-17 22:28:15.298 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 22:28:15.318 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 22:28:15.318 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 1. Moving 2 positions.
17-03-17 22:28:15.318 -07 000000610 INF: ReagentValve: Xmit -01\r
17-03-17 22:28:15.528 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 22:28:15.548 -07 000000610 INF: ReagentValve: Recv 0198\r
17-03-17 22:28:15.548 -07 000000610 INF: ReagentValve: Move- from 3 to 1 took 408 steps, expected 408. Error = 0 steps (0.0%)
17-03-17 22:28:15.598 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 22:28:15.618 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-17 22:28:15.618 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 22:28:15.718 -07 000000610 INF: =================== Cycle #64, Pumping Reagent IMT (1) ===================
17-03-17 22:28:15.718 -07 000000610 INF: LanePump: Pumping from 1, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 22:28:15.718 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:28:15.748 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 22:28:15.748 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 22:28:15.748 -07 000000610 INF: =================== Cycle #64, Pumping Reagent IMT (1), Aspirating port InputPort ===================
17-03-17 22:28:15.878 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 22:28:15.918 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:28:16.978 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 0
17-03-17 22:28:16.978 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 63. Bubbles during last 5000 ms interval: R1=0, R2=1, Total=1. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1015, R2=1045, Total=2060. Warn if over 250 bubbles per interval.
17-03-17 22:28:17.358 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:28:17.388 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:28:17.668 -07 000000478 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 64, FrontChillerTemperature: 4.012614,
17-03-17 22:28:17.808 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:28:17.838 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:28:17.838 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-17 22:28:17.838 -07 000000610 INF: =================== Cycle #64, Pumping Reagent IMT (1) ===================
17-03-17 22:28:17.968 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:28:17.998 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 22:28:17.998 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 22:28:18.128 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:28:18.158 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 22:28:18.158 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 22:28:18.158 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 22:28:18.288 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 22:28:18.318 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:28:18.748 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:28:18.778 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:28:18.778 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 22:28:18.778 -07 000000610 INF: =================== Cycle #64 ===================
17-03-17 22:28:19.998 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 22:28:19.998 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 22:28:19.998 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 22:28:20.018 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-17 22:28:20.018 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 1 to 3. Moving 2 positions.
17-03-17 22:28:20.018 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 22:28:20.248 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 22:28:20.268 -07 000000610 INF: ReagentValve: Recv 01AC\r
17-03-17 22:28:20.268 -07 000000610 INF: ReagentValve: Move+ from 1 to 3 took 428 steps, expected 408. Error = 20 steps (4.9%)
17-03-17 22:28:20.318 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 22:28:20.338 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 22:28:20.338 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 22:28:20.438 -07 000000610 INF: =================== Cycle #64, Pumping Reagent PR2 (3) ===================
17-03-17 22:28:20.438 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 22:28:20.438 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:28:20.468 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 22:28:20.468 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 22:28:20.468 -07 000000610 INF: =================== Cycle #64, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 22:28:20.598 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 22:28:20.638 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:28:21.508 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:28:21.538 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:28:21.538 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-17 22:28:21.538 -07 000000610 INF: =================== Cycle #64, Pumping Reagent PR2 (3) ===================
17-03-17 22:28:21.668 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:28:21.698 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 22:28:21.698 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 22:28:21.828 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:28:21.858 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 22:28:21.858 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 22:28:21.858 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 22:28:21.978 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:28:21.978 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 63. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1015, R2=1045, Total=2060. Warn if over 250 bubbles per interval.
17-03-17 22:28:21.988 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 22:28:22.018 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:28:22.448 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:28:22.478 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:28:22.478 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 22:28:22.478 -07 000000610 INF: =================== Cycle #64 ===================
17-03-17 22:28:22.478 -07 000000610 INF: =================== Cycle #64, Flow Cell Temp 65° ===================
17-03-17 22:28:22.478 -07 000000610 INF: =================== Cycle #64, Flow Cell Temp 65°, FC temperature to 65° ===================
17-03-17 22:28:22.478 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 65000000\n [FlowCellTempControl]
17-03-17 22:28:22.478 -07 000000424 INF: FPGA: Recv TEC2TEMP 
17-03-17 22:28:22.488 -07 000000610 INF: FPGA: 'TEC2TEMP 0 65000000' command took 1 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 22:28:22.488 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 22:28:22.488 -07 000000424 INF: FPGA: Recv TEC2EN 
17-03-17 22:28:22.498 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:28:22.498 -07 000000610 INF: =================== Cycle #64, Flow Cell Temp 65° ===================
17-03-17 22:28:22.498 -07 000000610 INF: =================== Cycle #64 ===================
17-03-17 22:28:22.498 -07 000000610 INF: WaitCommand(30000) start
17-03-17 22:28:23.038 -07 000000478 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 64, FrontChillerTemperature: 3.99219,
17-03-17 22:28:26.978 -07 000000478 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:28:26.978 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 63. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1015, R2=1045, Total=2060. Warn if over 250 bubbles per interval.
17-03-17 22:28:28.408 -07 000000627 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 64, FrontChillerTemperature: 4.003063,
17-03-17 22:28:31.978 -07 000000431 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:28:31.978 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 63. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1015, R2=1045, Total=2060. Warn if over 250 bubbles per interval.
17-03-17 22:28:33.778 -07 000000476 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 64, FrontChillerTemperature: 3.999021,
17-03-17 22:28:36.978 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:28:36.978 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 63. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1015, R2=1045, Total=2060. Warn if over 250 bubbles per interval.
17-03-17 22:28:39.828 -07 000000431 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 64, FrontChillerTemperature: 3.993549,
17-03-17 22:28:41.978 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:28:41.978 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 63. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1015, R2=1045, Total=2060. Warn if over 250 bubbles per interval.
17-03-17 22:28:45.198 -07 000000627 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 64, FrontChillerTemperature: 4.003063,
17-03-17 22:28:46.978 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:28:46.978 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 63. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1015, R2=1045, Total=2060. Warn if over 250 bubbles per interval.
17-03-17 22:28:50.558 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 64, FrontChillerTemperature: 3.979922,
17-03-17 22:28:51.978 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:28:51.978 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 63. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1015, R2=1045, Total=2060. Warn if over 250 bubbles per interval.
17-03-17 22:28:52.508 -07 000000610 INF: WaitCommand(30000) end
17-03-17 22:28:52.508 -07 000000610 INF: =================== Cycle #64, Pumping Reagent PR2 (3) ===================
17-03-17 22:28:52.508 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 5 µL, calling command Pumping to Flow Cell #1
17-03-17 22:28:52.608 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:28:52.638 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 22:28:52.638 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 22:28:52.638 -07 000000610 INF: =================== Cycle #64, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 22:28:52.768 -07 000000610 INF: LanePump: Xmit /1V400IP30R\r
17-03-17 22:28:52.808 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:28:53.348 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:28:53.378 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:28:53.378 -07 000000610 INF: LanePump: Waited 569 ms for pump motion to complete
17-03-17 22:28:53.378 -07 000000610 INF: =================== Cycle #64, Pumping Reagent PR2 (3) ===================
17-03-17 22:28:53.508 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:28:53.538 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 22:28:53.538 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-17 22:28:53.668 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:28:53.698 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 22:28:53.698 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-17 22:28:53.698 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 22:28:53.828 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 22:28:53.858 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:28:54.288 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:28:54.318 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:28:54.318 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 22:28:54.318 -07 000000610 INF: =================== Cycle #64 ===================
17-03-17 22:28:54.318 -07 000000431 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 22:28:54.318 -07 000000012 INF: WaitCommand(30000) start
17-03-17 22:28:54.318 -07 000000431 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 22:28:55.538 -07 000000431 INF: AsyncDelayTimer waited 1216ms
17-03-17 22:28:55.538 -07 000000431 INF: LanePump: Xmit /1?\r
17-03-17 22:28:55.568 -07 000000431 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 22:28:55.568 -07 000000431 INF: LanePump: Current Position of Pump is: 1920
17-03-17 22:28:55.698 -07 000000431 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 22:28:55.738 -07 000000431 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:28:55.928 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 64, FrontChillerTemperature: 4.003063,
17-03-17 22:28:56.978 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:28:56.978 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 63. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1015, R2=1045, Total=2060. Warn if over 250 bubbles per interval.
17-03-17 22:28:58.078 -07 000000431 INF: LanePump: Xmit /1Q\r
17-03-17 22:28:58.108 -07 000000431 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:28:58.528 -07 000000431 INF: LanePump: Xmit /1Q\r
17-03-17 22:28:58.558 -07 000000431 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:28:58.558 -07 000000431 INF: LanePump: Waited 2819 ms for pump motion to complete
17-03-17 22:28:58.558 -07 000000431 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 22:28:58.558 -07 000000431 INF: ===================  ===================
17-03-17 22:29:01.338 -07 000000486 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 64, FrontChillerTemperature: 4.02213,
17-03-17 22:29:01.978 -07 000000486 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:29:01.978 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 63. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1015, R2=1045, Total=2060. Warn if over 250 bubbles per interval.
17-03-17 22:29:06.698 -07 000000486 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 64, FrontChillerTemperature: 4.008536,
17-03-17 22:29:06.978 -07 000000486 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:29:06.978 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 63. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1015, R2=1045, Total=2060. Warn if over 250 bubbles per interval.
17-03-17 22:29:11.978 -07 000000431 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:29:11.978 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 63. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1015, R2=1045, Total=2060. Warn if over 250 bubbles per interval.
17-03-17 22:29:12.068 -07 000000431 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 64, FrontChillerTemperature: 4.011254,
17-03-17 22:29:16.978 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:29:16.978 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 63. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1015, R2=1045, Total=2060. Warn if over 250 bubbles per interval.
17-03-17 22:29:17.438 -07 000000431 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 64, FrontChillerTemperature: 3.990831,
17-03-17 22:29:21.978 -07 000000448 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:29:21.978 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 63. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1015, R2=1045, Total=2060. Warn if over 250 bubbles per interval.
17-03-17 22:29:23.648 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 64, FrontChillerTemperature: 3.989471,
17-03-17 22:29:24.328 -07 000000012 INF: WaitCommand(30000) end
17-03-17 22:29:24.328 -07 000000610 INF: =================== Cycle #64, Flow Cell Temp 22° ===================
17-03-17 22:29:24.328 -07 000000610 INF: =================== Cycle #64, Flow Cell Temp 22°, FC temperature to 22° ===================
17-03-17 22:29:24.328 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 22000000\n [FlowCellTempControl]
17-03-17 22:29:24.338 -07 000000012 INF: FPGA: Recv TEC2TEMP 
17-03-17 22:29:24.338 -07 000000610 INF: FPGA: 'TEC2TEMP 0 22000000' command took 1 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:29:24.338 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 22:29:24.338 -07 000000476 INF: FPGA: Recv TEC2EN 
17-03-17 22:29:24.348 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:29:24.348 -07 000000610 INF: =================== Cycle #64, Flow Cell Temp 22° ===================
17-03-17 22:29:24.348 -07 000000610 INF: =================== Cycle #64 ===================
17-03-17 22:29:24.348 -07 000000610 INF: =================== Cycle #64, Pumping Reagent PR2 (3) ===================
17-03-17 22:29:24.348 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-17 22:29:24.348 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:29:24.388 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 22:29:24.388 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 22:29:24.388 -07 000000610 INF: =================== Cycle #64, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 22:29:24.518 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-17 22:29:24.558 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:29:26.978 -07 000000486 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:29:26.978 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 63. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1015, R2=1045, Total=2060. Warn if over 250 bubbles per interval.
17-03-17 22:29:27.688 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:29:27.718 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:29:28.138 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:29:28.168 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:29:28.588 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:29:28.618 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:29:28.618 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-17 22:29:28.618 -07 000000610 INF: =================== Cycle #64, Pumping Reagent PR2 (3) ===================
17-03-17 22:29:28.748 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:29:28.778 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 22:29:28.778 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 22:29:28.908 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:29:28.938 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 22:29:28.938 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 22:29:28.938 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 22:29:29.018 -07 000000486 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 64, FrontChillerTemperature: 3.986717,
17-03-17 22:29:29.068 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 22:29:29.098 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:29:29.528 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:29:29.558 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:29:29.558 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 22:29:29.558 -07 000000610 INF: =================== Cycle #64 ===================
17-03-17 22:29:30.778 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 22:29:30.778 -07 000000610 INF: ReagentValve: Go to position 2 - PumpToFlowcell start
17-03-17 22:29:30.778 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 22:29:30.798 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 22:29:30.798 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 2. Moving 1 positions.
17-03-17 22:29:30.798 -07 000000610 INF: ReagentValve: Xmit -02\r
17-03-17 22:29:30.948 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 22:29:30.968 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-17 22:29:30.968 -07 000000610 INF: ReagentValve: Move- from 3 to 2 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-17 22:29:31.018 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 22:29:31.038 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-17 22:29:31.038 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 22:29:31.138 -07 000000610 INF: =================== Cycle #64, Pumping Reagent USM (2) ===================
17-03-17 22:29:31.138 -07 000000610 INF: LanePump: Pumping from 2, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 22:29:31.138 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:29:31.168 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 22:29:31.168 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 22:29:31.168 -07 000000610 INF: =================== Cycle #64, Pumping Reagent USM (2), Aspirating port InputPort ===================
17-03-17 22:29:31.298 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 22:29:31.338 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:29:31.978 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 1
17-03-17 22:29:31.978 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 63. Bubbles during last 5000 ms interval: R1=1, R2=1, Total=2. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1016, R2=1046, Total=2062. Warn if over 250 bubbles per interval.
17-03-17 22:29:32.778 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:29:32.808 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:29:33.228 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:29:33.258 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:29:33.258 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-17 22:29:33.258 -07 000000610 INF: =================== Cycle #64, Pumping Reagent USM (2) ===================
17-03-17 22:29:33.388 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:29:33.418 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 22:29:33.418 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 22:29:33.548 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:29:33.578 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 22:29:33.578 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 22:29:33.578 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 22:29:33.708 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 22:29:33.738 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:29:34.168 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:29:34.198 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:29:34.198 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 22:29:34.198 -07 000000610 INF: =================== Cycle #64 ===================
17-03-17 22:29:34.728 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 64, FrontChillerTemperature: 4.018051,
17-03-17 22:29:35.418 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 22:29:35.418 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 22:29:35.418 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 22:29:35.438 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-17 22:29:35.438 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 2 to 3. Moving 1 positions.
17-03-17 22:29:35.438 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 22:29:35.588 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 22:29:35.608 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-17 22:29:35.608 -07 000000610 INF: ReagentValve: Move+ from 2 to 3 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-17 22:29:35.658 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 22:29:35.678 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 22:29:35.678 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 22:29:35.778 -07 000000610 INF: =================== Cycle #64, Pumping Reagent PR2 (3) ===================
17-03-17 22:29:35.778 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 22:29:35.778 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:29:35.808 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 22:29:35.808 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 22:29:35.808 -07 000000610 INF: =================== Cycle #64, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 22:29:35.938 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 22:29:35.978 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:29:36.848 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:29:36.878 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:29:36.878 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-17 22:29:36.878 -07 000000610 INF: =================== Cycle #64, Pumping Reagent PR2 (3) ===================
17-03-17 22:29:36.978 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:29:36.978 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 63. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1016, R2=1046, Total=2062. Warn if over 250 bubbles per interval.
17-03-17 22:29:37.008 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:29:37.038 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 22:29:37.038 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 22:29:37.168 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:29:37.198 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 22:29:37.198 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 22:29:37.198 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 22:29:37.328 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 22:29:37.358 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:29:37.788 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:29:37.818 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:29:37.818 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 22:29:37.818 -07 000000610 INF: =================== Cycle #64 ===================
17-03-17 22:29:37.818 -07 000000448 INF: WaitCommand(10000) start
17-03-17 22:29:37.818 -07 000000626 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 22:29:37.818 -07 000000626 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 22:29:39.038 -07 000000626 INF: AsyncDelayTimer waited 1215ms
17-03-17 22:29:39.038 -07 000000626 INF: LanePump: Xmit /1?\r
17-03-17 22:29:39.068 -07 000000626 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 22:29:39.068 -07 000000626 INF: LanePump: Current Position of Pump is: 1110
17-03-17 22:29:39.198 -07 000000626 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 22:29:39.238 -07 000000626 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:29:40.098 -07 000000627 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 64, FrontChillerTemperature: 3.994908,
17-03-17 22:29:40.768 -07 000000626 INF: LanePump: Xmit /1Q\r
17-03-17 22:29:40.798 -07 000000626 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:29:41.218 -07 000000626 INF: LanePump: Xmit /1Q\r
17-03-17 22:29:41.248 -07 000000626 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:29:41.248 -07 000000626 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-17 22:29:41.248 -07 000000626 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 22:29:41.248 -07 000000626 INF: ===================  ===================
17-03-17 22:29:41.978 -07 000000431 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:29:41.978 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 63. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1016, R2=1046, Total=2062. Warn if over 250 bubbles per interval.
17-03-17 22:29:45.458 -07 000000486 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 64, FrontChillerTemperature: 4.000345,
17-03-17 22:29:46.978 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:29:46.978 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 63. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1016, R2=1046, Total=2062. Warn if over 250 bubbles per interval.
17-03-17 22:29:47.828 -07 000000448 INF: WaitCommand(10000) end
17-03-17 22:29:47.828 -07 000000610 INF: =================== Cycle #64, Imaging ===================
17-03-17 22:29:47.828 -07 000000610 INF: Imaging Cycle 64: ScanTilesCommand Cycle 64 time start.
17-03-17 22:29:47.838 -07 000000610 INF: ReagentValve: Go to position 24 (Plug) - Start of ScanTilesCommand
17-03-17 22:29:47.838 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 22:29:47.858 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 22:29:47.858 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 24. Moving 3 positions.
17-03-17 22:29:47.858 -07 000000610 INF: ReagentValve: Xmit -18\r
17-03-17 22:29:48.158 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 22:29:48.178 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-17 22:29:48.178 -07 000000610 INF: ReagentValve: Move- from 3 to 24 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-17 22:29:48.228 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 22:29:48.248 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-17 22:29:48.248 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:29:48.248 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:29:48.248 -07 000000486 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms start.
17-03-17 22:29:48.248 -07 000000486 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:29:48.248 -07 000000486 INF: FPGA: Xmit EXLED1ON\n [RedLED]
17-03-17 22:29:48.248 -07 000000012 INF: FPGA: Recv EXLED1ON 
17-03-17 22:29:48.258 -07 000000486 INF: FPGA: 'EXLED1ON' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:29:48.258 -07 000000486 INF: FPGA: Xmit EXLED1ADCR\n [RedLED]
17-03-17 22:29:48.258 -07 000000431 INF: FPGA: Recv EXLED1ADCR 23201
17-03-17 22:29:48.268 -07 000000486 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:29:48.268 -07 000000486 INF: RedLED: Using Red data: Photodiode ADC 23201 --> 7.5 mW (old method), or 205.6 mW (new method). Difference = 198.2 mW
17-03-17 22:29:48.268 -07 000000486 INF: FPGA: Xmit EXLED1OFF\n [RedLED]
17-03-17 22:29:48.268 -07 000000626 INF: FPGA: Recv EXLED1OFF 
17-03-17 22:29:48.278 -07 000000486 INF: FPGA: 'EXLED1OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:29:48.278 -07 000000486 INF: RedLED: LED was on for 20 ms
17-03-17 22:29:48.278 -07 000000486 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms end. Duration was 24 ms.
17-03-17 22:29:48.278 -07 000000486 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms start.
17-03-17 22:29:48.278 -07 000000486 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:29:48.278 -07 000000486 INF: FPGA: Xmit EXLED2ON\n [GreenLED]
17-03-17 22:29:48.278 -07 000000424 INF: FPGA: Recv EXLED2ON 
17-03-17 22:29:48.288 -07 000000486 INF: FPGA: 'EXLED2ON' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 22:29:48.288 -07 000000486 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-17 22:29:48.288 -07 000000448 INF: FPGA: Recv EXLED1ADCR 2105
17-03-17 22:29:48.298 -07 000000486 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:29:48.298 -07 000000486 INF: GreenLED: Using Green data: Photodiode ADC 2105 --> 0.9 mW (old method), or 182.9 mW (new method). Difference = 181.9 mW
17-03-17 22:29:48.298 -07 000000486 INF: FPGA: Xmit EXLED2OFF\n [GreenLED]
17-03-17 22:29:48.298 -07 000000424 INF: FPGA: Recv EXLED2OFF 
17-03-17 22:29:48.308 -07 000000486 INF: FPGA: 'EXLED2OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:29:48.308 -07 000000486 INF: GreenLED: LED was on for 19 ms
17-03-17 22:29:48.308 -07 000000486 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms end. Duration was 26 ms.
17-03-17 22:29:48.308 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-17 22:29:48.308 -07 000000626 INF: FPGA: Recv EMCUR 
17-03-17 22:29:48.318 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:29:48.318 -07 000000610 INF: FPGA: Xmit EMOUT 20 70\n [Compensator]
17-03-17 22:29:49.068 -07 000000626 INF: FPGA: Recv EMOUT
17-03-17 22:29:49.068 -07 000000610 INF: FPGA: 'EMOUT 20 70' command took 0 ms to send, 740 ms to get response, and 750 ms overall
17-03-17 22:29:49.068 -07 000000610 INF: FPGA: Xmit EMCUR 75\n [Compensator]
17-03-17 22:29:49.068 -07 000000424 INF: FPGA: Recv EMCUR 
17-03-17 22:29:49.078 -07 000000610 INF: FPGA: 'EMCUR 75' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:29:49.078 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 22:29:49.078 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 75.380859375, Z-Position -0.127775438095578. ------
17-03-17 22:29:49.078 -07 000000012 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:29:49.078 -07 000000626 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.17942 mm
17-03-17 22:29:49.078 -07 000000626 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:29:49.078 -07 000000424 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-17 22:29:49.078 -07 000000424 INF: Y Motor: Moving to 59.9126 mm, started at 75.3809 mm, delta = -15.4683 mm
17-03-17 22:29:49.078 -07 000000448 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:29:49.088 -07 000000012 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:29:49.088 -07 000000476 INF: Z Motor: Entering MoveAbsStepped (DAC = 39194, sync = True, waitForSettling = False)
17-03-17 22:29:49.088 -07 000000476 INF: Z Motor: Moving to -0.179419 mm, started at -0.127775 mm, distance = -51.64 um
17-03-17 22:29:49.088 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:29:49.088 -07 000000448 INF: FPGA: Recv YRDPOS 154381
17-03-17 22:29:49.098 -07 000000012 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:29:49.098 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:29:49.098 -07 000000424 INF: Y Motor: Encoder = 154381 = motor step 120610.2 = 75.3813 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:29:49.098 -07 000000424 INF: Y Motor: Last commanded position = 75.3806 mm (120608.9 steps), delta from last commanded position = -15.4680 mm (-24748.8 steps). UsingTableMove = False
17-03-17 22:29:49.098 -07 000000424 INF: Y Motor: Moving to 122701 encoder counts
17-03-17 22:29:49.108 -07 000000476 INF: FPGA: Xmit ZDACW 39194\n [Z Motor]
17-03-17 22:29:49.108 -07 000000486 INF: FPGA: Recv ZDACW
17-03-17 22:29:49.118 -07 000000476 INF: FPGA: 'ZDACW 39194' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:29:49.118 -07 000000424 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-17 22:29:49.128 -07 000000476 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:29:49.128 -07 000000486 INF: FPGA: Recv ZDACR 39194
17-03-17 22:29:49.138 -07 000000476 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:29:49.138 -07 000000476 INF: Z Motor: MoveAbsStepped took 50 ms (did NOT wait for settling yet))
17-03-17 22:29:49.298 -07 000000486 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:29:49.298 -07 000000012 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 212 ms overall
17-03-17 22:29:50.798 -07 000000012 INF: FPGA: Recv YMVTO 122703 24776
17-03-17 22:29:50.798 -07 000000424 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1676 ms to get response, and 1702 ms overall
17-03-17 22:29:50.798 -07 000000424 INF: Y Motor: Position error before settling = 2 encoder counts (0.001 mm)
17-03-17 22:29:50.798 -07 000000424 INF: Y Motor: To move from 75.381 to 59.913 (-15.468 mm) should take 24750 steps, but required 24776 steps (15.485 mm). Slippage = 0.016 mm (0.00%).
17-03-17 22:29:50.798 -07 000000424 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1702 ms, distance = 15.468 mm, average velocity = 9.088 mm/sec
17-03-17 22:29:50.828 -07 000000448 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 64, FrontChillerTemperature: 4.019446,
17-03-17 22:29:51.978 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:29:51.978 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 63. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1016, R2=1046, Total=2062. Warn if over 250 bubbles per interval.
17-03-17 22:29:53.648 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:29:53.648 -07 000000486 INF: FPGA: Recv YRDPOS 122698
17-03-17 22:29:53.658 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:29:53.658 -07 000000424 INF: Y Motor: Encoder = 122698 = motor step 95857.8 = 59.9111 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:29:53.678 -07 000000424 INF: Y Motor: After move to 59.912609, error = -0.001476, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:29:53.678 -07 000000424 INF: Y Motor: Position error after settling = -3 encoder counts (-0.001 mm), Delta during settling = -5 counts (-0.002 mm)
17-03-17 22:29:53.678 -07 000000424 INF: Y Motor: Moved to 59.9111 after 4597 ms
17-03-17 22:29:53.678 -07 000000626 INF: Z Motor: EndOfMoveAbsStepped: target = -0.179419 mm (DAC = 39194)
17-03-17 22:29:53.678 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:29:53.688 -07 000000627 INF: FPGA: Recv ZSGSRD 37224
17-03-17 22:29:53.688 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-17 22:29:53.688 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:29:53.688 -07 000000424 INF: FPGA: Recv ZSGSRD 37218
17-03-17 22:29:53.698 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:29:53.698 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:29:53.698 -07 000000431 INF: FPGA: Recv ZSGSRD 37215
17-03-17 22:29:53.708 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:29:53.708 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:29:53.708 -07 000000424 INF: FPGA: Recv ZSGSRD 37218
17-03-17 22:29:53.718 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:29:53.718 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:29:53.718 -07 000000431 INF: FPGA: Recv ZSGSRD 37221
17-03-17 22:29:53.728 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:29:53.728 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:29:53.728 -07 000000424 INF: FPGA: Recv ZSGSRD 37222
17-03-17 22:29:53.738 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:29:53.738 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:29:53.738 -07 000000476 INF: FPGA: Recv ZSGSRD 37216
17-03-17 22:29:53.748 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:29:53.748 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:29:53.748 -07 000000424 INF: FPGA: Recv ZSGSRD 37217
17-03-17 22:29:53.758 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:29:53.758 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:29:53.758 -07 000000431 INF: FPGA: Recv ZSGSRD 37219
17-03-17 22:29:53.768 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:29:53.768 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:29:53.768 -07 000000486 INF: FPGA: Recv ZSGSRD 37220
17-03-17 22:29:53.778 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:29:53.778 -07 000000626 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:29:53.778 -07 000000012 INF: FPGA: Recv ZPIEZORD 33682
17-03-17 22:29:53.788 -07 000000626 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:29:53.788 -07 000000626 INF: Z Motor: Piezo is near 52.0 V (nominally 0 to 100 V), expect near 59.8 V, since DAC is at 5.981 V. Piezo Error = -7.9 V.
17-03-17 22:29:53.788 -07 000000626 INF: Z Motor: ReadAdcAverage: Commanded Z = -179.4 um, Read 10 ADC samples: Avg = 37219 (-178.5 uncal um), Error = 0.9 uncal um, Median = 37218 (-178.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 37215 (-178.5 uncal um), Max = 37224 (-178.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 22:29:53.788 -07 000000626 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37219, posNoise = 5, negNoise = 4
17-03-17 22:29:53.788 -07 000000626 INF: Z Motor: After move to -0.179419, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:29:53.788 -07 000000626 INF: Z Motor: Settle wait time = 4599 ms, measure time = 101 ms (allowed 150 ms), total time = 4700 ms
17-03-17 22:29:53.788 -07 000000626 INF: Z Motor: Waiting extra 49 ms after reading position to reach expected total of 150 ms
17-03-17 22:29:53.838 -07 000000626 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4753 ms
17-03-17 22:29:53.838 -07 000000626 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:29:53.838 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:29:53.838 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:29:53.838 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:29:53.838 -07 000000448 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:29:53.838 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:29:53.838 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:29:53.838 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:29:53.838 -07 000000448 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-17 22:29:53.868 -07 000000448 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 23 ms.
17-03-17 22:29:53.868 -07 000000448 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:29:53.868 -07 000000448 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-17 22:29:53.868 -07 000000448 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:29:53.878 -07 000000448 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 22:29:53.878 -07 000000448 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 41 ms.
17-03-17 22:29:53.888 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:29:53.928 -07 000000627 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:29:54.128 -07 000000448 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:29:54.128 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:29:54.128 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:29:54.128 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 22:29:54.168 -07 000000627 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:29:54.168 -07 000000431 INF: FPGA: Recv CAMSNAP
17-03-17 22:29:54.168 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 285 ms overall
17-03-17 22:29:54.258 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 22:29:54.258 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:29:54.258 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:29:54.258 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 22:29:54.368 -07 000000448 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:29:54.368 -07 000000627 INF: Image SNR check: start
17-03-17 22:29:54.368 -07 000000431 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:29:54.378 -07 000000448 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:29:54.378 -07 000000448 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:29:54.378 -07 000000627 INF: Image SNR check: pass  [peak (Max-Min)=58.95]
17-03-17 22:29:54.378 -07 000000627 INF: Autofocus start
17-03-17 22:29:54.378 -07 000000627 INF: MeasureProfile start
17-03-17 22:29:54.388 -07 000000627 INF: MeasureProfile done
17-03-17 22:29:54.388 -07 000000627 INF: X=16  Z correction [um]=0.01042744
17-03-17 22:29:54.398 -07 000000627 INF: Autofocus finished
17-03-17 22:29:54.578 -07 000000476 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:29:54.578 -07 000000448 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:29:54.578 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.9111328125, Z-position -0.179426103715336. ----------
17-03-17 22:29:54.578 -07 000000610 INF: Cycle	64	Tile	1	Exposure Settings		A	454	G	218	T	218	C	454
17-03-17 22:29:54.588 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37709, sync = True, waitForSettling = True)
17-03-17 22:29:54.588 -07 000000610 INF: Z Motor: Moving to -0.172621 mm, started at -0.179426 mm, distance = 6.81 um
17-03-17 22:29:54.588 -07 000000610 INF: FPGA: Xmit ZDACW 37709\n [Z Motor]
17-03-17 22:29:54.588 -07 000000476 INF: FPGA: Recv ZDACW
17-03-17 22:29:54.598 -07 000000610 INF: FPGA: 'ZDACW 37709' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:29:54.598 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:29:54.598 -07 000000626 INF: FPGA: Recv ZDACR 37709
17-03-17 22:29:54.608 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:29:54.608 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:29:54.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:29:54.758 -07 000000012 INF: FPGA: Recv ZSGSRD 36162
17-03-17 22:29:54.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:29:54.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:29:54.768 -07 000000424 INF: FPGA: Recv ZSGSRD 36164
17-03-17 22:29:54.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:29:54.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:29:54.778 -07 000000012 INF: FPGA: Recv ZSGSRD 36165
17-03-17 22:29:54.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:29:54.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:29:54.788 -07 000000486 INF: FPGA: Recv ZSGSRD 36155
17-03-17 22:29:54.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:29:54.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:29:54.798 -07 000000448 INF: FPGA: Recv ZSGSRD 36162
17-03-17 22:29:54.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:29:54.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:29:54.808 -07 000000627 INF: FPGA: Recv ZSGSRD 36168
17-03-17 22:29:54.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:29:54.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:29:54.818 -07 000000486 INF: FPGA: Recv ZSGSRD 36160
17-03-17 22:29:54.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:29:54.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:29:54.828 -07 000000431 INF: FPGA: Recv ZSGSRD 36160
17-03-17 22:29:54.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:29:54.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:29:54.838 -07 000000486 INF: FPGA: Recv ZSGSRD 36156
17-03-17 22:29:54.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:29:54.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:29:54.848 -07 000000627 INF: FPGA: Recv ZSGSRD 36165
17-03-17 22:29:54.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:29:54.858 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:29:54.858 -07 000000486 INF: FPGA: Recv ZPIEZORD 32229
17-03-17 22:29:54.868 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:29:54.868 -07 000000610 INF: Z Motor: Piezo is near 48.8 V (nominally 0 to 100 V), expect near 57.5 V, since DAC is at 5.754 V. Piezo Error = -8.7 V.
17-03-17 22:29:54.868 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.6 um, Read 10 ADC samples: Avg = 36162 (-171.8 uncal um), Error = 0.9 uncal um, Median = 36162 (-171.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36155 (-171.7 uncal um), Max = 36168 (-171.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 22:29:54.868 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36162, posNoise = 6, negNoise = 7
17-03-17 22:29:54.868 -07 000000610 INF: Z Motor: After move to -0.172621, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:29:54.868 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 22:29:54.868 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:29:54.868 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:29:54.868 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:29:54.868 -07 000000431 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:29:54.868 -07 000000476 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:29:54.868 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:29:54.868 -07 000000486 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:29:54.868 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:29:54.868 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:29:54.868 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:29:54.868 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:29:54.868 -07 000000486 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-17 22:29:54.868 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:29:54.868 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:29:54.888 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 22:29:54.888 -07 000000476 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 22:29:54.888 -07 000000486 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 22 ms.
17-03-17 22:29:54.888 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:29:54.898 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 22:29:54.898 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:29:54.908 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-17 22:29:54.908 -07 000000486 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 38 ms.
17-03-17 22:29:54.908 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 454 454 218 218 37885 150\n [Camera]
17-03-17 22:29:55.108 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:29:55.558 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 646
17-03-17 22:29:55.558 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 646
17-03-17 22:29:55.558 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:29:55.568 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 646
17-03-17 22:29:55.568 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 646
17-03-17 22:29:55.568 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:29:55.568 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:29:55.568 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 22:29:55.578 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:29:55.578 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 22:29:55.758 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37885 839
17-03-17 22:29:55.908 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning grn on 989
17-03-17 22:29:55.958 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 22:29:55.958 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 22:29:55.958 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:29:55.958 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 384 ms.
17-03-17 22:29:55.958 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 22:29:55.958 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:29:55.958 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:29:55.958 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:29:55.958 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 22:29:55.968 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 22:29:56.128 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1207
17-03-17 22:29:56.128 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1207
17-03-17 22:29:56.128 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:29:56.238 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1207
17-03-17 22:29:56.238 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1207
17-03-17 22:29:56.248 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:29:56.248 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:29:56.248 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-17 22:29:56.248 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:29:56.248 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 22:29:56.648 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 398 ms.
17-03-17 22:29:56.648 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 22:29:56.648 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:29:56.648 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 404 ms.
17-03-17 22:29:56.648 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 22:29:56.648 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:29:56.648 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:29:56.658 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:29:56.658 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 527 ms.
17-03-17 22:29:56.658 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-17 22:29:56.658 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP 1400
17-03-17 22:29:56.668 -07 000000429 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:29:56.668 -07 000000610 INF: FPGA: 'CAMDBLSNAP 454 454 218 218 37885 150' command took 2 ms to send, 1750 ms to get response, and 1754 ms overall
17-03-17 22:29:56.668 -07 000000429 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 64, FrontChillerTemperature: 4.015368,
17-03-17 22:29:56.668 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 22:29:56.668 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.9111328125, Z-Position -0.172635711481495. ------
17-03-17 22:29:56.668 -07 000000431 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.17889 mm
17-03-17 22:29:56.668 -07 000000431 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:29:56.678 -07 000000429 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:29:57.228 -07 000000618 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-17 22:29:57.228 -07 000000618 INF: Y Motor: Moving to 60.7426 mm, started at 59.9111 mm, delta = 0.8315 mm
17-03-17 22:29:57.228 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:29:58.228 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:29:58.228 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:29:58.228 -07 000000012 INF: FPGA: Recv YRDPOS 122698
17-03-17 22:29:58.228 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 990 ms to get response, and 992 ms overall
17-03-17 22:29:58.228 -07 000000429 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1540 ms to get response, and 1554 ms overall
17-03-17 22:29:58.228 -07 000000618 INF: Y Motor: Encoder = 122698 = motor step 95857.8 = 59.9111 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:29:58.228 -07 000000618 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:29:58.228 -07 000000618 INF: Y Motor: Moving 1330 steps2
17-03-17 22:29:58.228 -07 000000012 INF: Z Motor: Entering MoveAbsStepped (DAC = 39080, sync = True, waitForSettling = False)
17-03-17 22:29:58.228 -07 000000012 INF: Z Motor: Moving to -0.178897 mm, started at -0.172636 mm, distance = -6.26 um
17-03-17 22:29:58.228 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 63. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1016, R2=1046, Total=2062. Warn if over 250 bubbles per interval.
17-03-17 22:29:58.238 -07 000000429 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:29:58.258 -07 000000618 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:29:58.268 -07 000000012 INF: FPGA: Xmit ZDACW 39080\n [Z Motor]
17-03-17 22:29:59.228 -07 000000627 INF: FPGA: Recv ZDACW
17-03-17 22:29:59.228 -07 000000627 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:29:59.228 -07 000000627 INF: FPGA: Recv YMVTILE
17-03-17 22:29:59.228 -07 000000429 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 980 ms to get response, and 998 ms overall
17-03-17 22:29:59.228 -07 000000618 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 960 ms to get response, and 998 ms overall
17-03-17 22:29:59.228 -07 000000012 INF: FPGA: 'ZDACW 39080' command took 0 ms to send, 950 ms to get response, and 997 ms overall
17-03-17 22:29:59.248 -07 000000012 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:29:59.248 -07 000000429 INF: FPGA: Recv ZDACR 39080
17-03-17 22:29:59.258 -07 000000012 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-17 22:29:59.258 -07 000000012 INF: Z Motor: MoveAbsStepped took 1027 ms (did NOT wait for settling yet))
17-03-17 22:29:59.278 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:29:59.278 -07 000000012 INF: FPGA: Recv YRDPOS 124381
17-03-17 22:29:59.288 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-17 22:29:59.288 -07 000000618 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:29:59.288 -07 000000618 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-17 22:29:59.288 -07 000000618 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 999 ms, distance = 0.831 mm, average velocity = 0.832 mm/sec
17-03-17 22:30:00.238 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:30:00.238 -07 000000012 INF: FPGA: Recv YRDPOS 124382
17-03-17 22:30:00.248 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:30:00.248 -07 000000618 INF: Y Motor: Encoder = 124382 = motor step 97173.4 = 60.7334 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:30:00.268 -07 000000618 INF: Y Motor: After move to 60.742607, error = -0.009209, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:30:00.268 -07 000000618 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 22:30:00.268 -07 000000618 INF: Y Motor: Moved to 60.7334 after 3037 ms (table move)
17-03-17 22:30:00.268 -07 000000431 INF: Z Motor: EndOfMoveAbsStepped: target = -0.178897 mm (DAC = 39080)
17-03-17 22:30:00.268 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:00.278 -07 000000012 INF: FPGA: Recv ZSGSRD 37146
17-03-17 22:30:00.278 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-17 22:30:00.278 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:00.278 -07 000000012 INF: FPGA: Recv ZSGSRD 37139
17-03-17 22:30:00.288 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:30:00.288 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:00.288 -07 000000012 INF: FPGA: Recv ZSGSRD 37135
17-03-17 22:30:00.298 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:00.298 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:00.298 -07 000000486 INF: FPGA: Recv ZSGSRD 37134
17-03-17 22:30:00.308 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:00.308 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:00.308 -07 000000012 INF: FPGA: Recv ZSGSRD 37138
17-03-17 22:30:00.318 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:00.318 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:00.318 -07 000000429 INF: FPGA: Recv ZSGSRD 37138
17-03-17 22:30:00.328 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:00.328 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:00.328 -07 000000618 INF: FPGA: Recv ZSGSRD 37133
17-03-17 22:30:00.338 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:00.338 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:00.338 -07 000000486 INF: FPGA: Recv ZSGSRD 37137
17-03-17 22:30:00.348 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:00.348 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:00.348 -07 000000012 INF: FPGA: Recv ZSGSRD 37142
17-03-17 22:30:00.358 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:00.358 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:00.358 -07 000000429 INF: FPGA: Recv ZSGSRD 37136
17-03-17 22:30:00.368 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:00.368 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:30:00.368 -07 000000429 INF: FPGA: Recv ZPIEZORD 33541
17-03-17 22:30:00.378 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:00.378 -07 000000431 INF: Z Motor: Piezo is near 51.7 V (nominally 0 to 100 V), expect near 59.6 V, since DAC is at 5.963 V. Piezo Error = -8.0 V.
17-03-17 22:30:00.378 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.9 um, Read 10 ADC samples: Avg = 37138 (-178.0 uncal um), Error = 0.9 uncal um, Median = 37138 (-178.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 37133 (-178.0 uncal um), Max = 37146 (-178.1 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 22:30:00.378 -07 000000431 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37138, posNoise = 8, negNoise = 5
17-03-17 22:30:00.378 -07 000000431 INF: Z Motor: After move to -0.178897, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:30:00.378 -07 000000431 INF: Z Motor: Settle wait time = 2046 ms, measure time = 103 ms (allowed 150 ms), total time = 2149 ms
17-03-17 22:30:00.378 -07 000000431 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 22:30:00.428 -07 000000431 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 3753 ms
17-03-17 22:30:00.428 -07 000000431 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:30:00.428 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:30:00.428 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:30:00.428 -07 000000429 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:30:00.428 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:30:00.428 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:30:00.428 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:30:00.428 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 22:30:00.428 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:30:00.428 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:30:00.428 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:30:00.448 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 22:30:00.448 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 22:30:00.448 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:30:00.498 -07 000000431 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:30:00.698 -07 000000626 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:30:00.698 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:30:00.698 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:30:00.698 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 22:30:00.728 -07 000000012 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:30:00.738 -07 000000486 INF: FPGA: Recv CAMSNAP
17-03-17 22:30:00.738 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 285 ms overall
17-03-17 22:30:00.828 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 22:30:00.828 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:30:00.828 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:30:00.828 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 22:30:00.838 -07 000000429 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:30:00.838 -07 000000431 INF: Autofocus start
17-03-17 22:30:00.838 -07 000000431 INF: MeasureProfile start
17-03-17 22:30:00.838 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:30:00.848 -07 000000429 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:30:00.848 -07 000000429 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:30:00.848 -07 000000431 INF: MeasureProfile done
17-03-17 22:30:00.848 -07 000000431 INF: X=-32  Z correction [um]=-0.2344
17-03-17 22:30:00.848 -07 000000431 INF: Autofocus finished
17-03-17 22:30:01.048 -07 000000486 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:30:01.048 -07 000000429 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:30:01.048 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.7333984375, Z-position -0.178905742531853. ----------
17-03-17 22:30:01.048 -07 000000610 INF: Cycle	64	Tile	2	Exposure Settings		A	454	G	218	T	218	C	454
17-03-17 22:30:01.058 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37541, sync = True, waitForSettling = True)
17-03-17 22:30:01.058 -07 000000610 INF: Z Motor: Moving to -0.171852 mm, started at -0.178906 mm, distance = 7.05 um
17-03-17 22:30:01.058 -07 000000610 INF: FPGA: Xmit ZDACW 37541\n [Z Motor]
17-03-17 22:30:01.058 -07 000000486 INF: FPGA: Recv ZDACW
17-03-17 22:30:01.068 -07 000000610 INF: FPGA: 'ZDACW 37541' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:01.068 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:30:01.068 -07 000000626 INF: FPGA: Recv ZDACR 37541
17-03-17 22:30:01.078 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:01.078 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:30:01.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:01.228 -07 000000429 INF: FPGA: Recv ZSGSRD 36047
17-03-17 22:30:01.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:01.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:01.238 -07 000000424 INF: FPGA: Recv ZSGSRD 36044
17-03-17 22:30:01.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:01.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:01.248 -07 000000486 INF: FPGA: Recv ZSGSRD 36041
17-03-17 22:30:01.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:01.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:01.258 -07 000000618 INF: FPGA: Recv ZSGSRD 36037
17-03-17 22:30:01.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:01.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:01.268 -07 000000012 INF: FPGA: Recv ZSGSRD 36045
17-03-17 22:30:01.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:01.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:01.278 -07 000000618 INF: FPGA: Recv ZSGSRD 36040
17-03-17 22:30:01.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:01.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:01.288 -07 000000431 INF: FPGA: Recv ZSGSRD 36039
17-03-17 22:30:01.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:01.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:01.298 -07 000000429 INF: FPGA: Recv ZSGSRD 36040
17-03-17 22:30:01.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:01.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:01.308 -07 000000462 INF: FPGA: Recv ZSGSRD 36040
17-03-17 22:30:01.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:01.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:01.318 -07 000000424 INF: FPGA: Recv ZSGSRD 36039
17-03-17 22:30:01.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:01.328 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:30:01.328 -07 000000012 INF: FPGA: Recv ZPIEZORD 32072
17-03-17 22:30:01.338 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:01.338 -07 000000610 INF: Z Motor: Piezo is near 48.5 V (nominally 0 to 100 V), expect near 57.3 V, since DAC is at 5.728 V. Piezo Error = -8.8 V.
17-03-17 22:30:01.338 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.9 um, Read 10 ADC samples: Avg = 36041 (-171.0 uncal um), Error = 0.9 uncal um, Median = 36040 (-171.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 36037 (-171.0 uncal um), Max = 36047 (-171.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 22:30:01.338 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36041, posNoise = 6, negNoise = 4
17-03-17 22:30:01.338 -07 000000610 INF: Z Motor: After move to -0.171852, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:30:01.338 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 22:30:01.338 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:30:01.338 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:30:01.338 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:30:01.338 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:30:01.338 -07 000000429 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:30:01.338 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:30:01.338 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:30:01.338 -07 000000486 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:30:01.338 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:30:01.338 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:30:01.338 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:30:01.338 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:30:01.348 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:30:01.348 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:30:01.348 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:30:01.348 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:30:01.358 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 22:30:01.358 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 22:30:01.358 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 17 ms.
17-03-17 22:30:01.358 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 23 ms.
17-03-17 22:30:01.368 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 454 454 218 218 37718 150\n [Camera]
17-03-17 22:30:01.558 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:30:01.978 -07 000000486 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:30:01.978 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 63. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1016, R2=1046, Total=2062. Warn if over 250 bubbles per interval.
17-03-17 22:30:02.018 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 646
17-03-17 22:30:02.018 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 646
17-03-17 22:30:02.018 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:30:02.018 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:30:02.018 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 644204472, 0x0, 391868352) start.
17-03-17 22:30:02.018 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 646
17-03-17 22:30:02.018 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 646
17-03-17 22:30:02.018 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:30:02.018 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:30:02.018 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1458343128, 0x0, 418435064) start.
17-03-17 22:30:02.208 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37718 839
17-03-17 22:30:02.358 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning grn on 989
17-03-17 22:30:02.418 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 644204472, 0x0, 391868352) end. Duration was 396 ms.
17-03-17 22:30:02.418 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 22:30:02.418 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:30:02.418 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:30:02.418 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 22:30:02.418 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1458343128, 0x0, 418435064) end. Duration was 396 ms.
17-03-17 22:30:02.418 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 22:30:02.418 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:30:02.418 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:30:02.428 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-17 22:30:02.578 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1207
17-03-17 22:30:02.578 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1207
17-03-17 22:30:02.578 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:30:02.578 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:30:02.578 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start.
17-03-17 22:30:02.578 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1207
17-03-17 22:30:02.578 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1207
17-03-17 22:30:02.578 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:30:02.578 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:30:02.578 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) start.
17-03-17 22:30:02.768 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP 1400
17-03-17 22:30:02.888 -07 000000424 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:30:02.888 -07 000000610 INF: FPGA: 'CAMDBLSNAP 454 454 218 218 37718 150' command took 2 ms to send, 1511 ms to get response, and 1521 ms overall
17-03-17 22:30:02.888 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 22:30:02.888 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.7333984375, Z-Position -0.171858381812342. ------
17-03-17 22:30:02.888 -07 000000486 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:30:02.888 -07 000000627 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.17815 mm
17-03-17 22:30:02.888 -07 000000627 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:30:02.898 -07 000000458 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-17 22:30:02.898 -07 000000458 INF: Y Motor: Moving to 61.5726 mm, started at 60.7334 mm, delta = 0.8392 mm
17-03-17 22:30:02.898 -07 000000458 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:30:02.898 -07 000000561 INF: Z Motor: Entering MoveAbsStepped (DAC = 38917, sync = True, waitForSettling = False)
17-03-17 22:30:02.898 -07 000000561 INF: Z Motor: Moving to -0.178151 mm, started at -0.171858 mm, distance = -6.29 um
17-03-17 22:30:02.898 -07 000000476 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:30:02.898 -07 000000486 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 4 ms to get response, and 6 ms overall
17-03-17 22:30:02.898 -07 000000431 INF: FPGA: Recv YRDPOS 124382
17-03-17 22:30:02.908 -07 000000458 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:02.908 -07 000000458 INF: Y Motor: Encoder = 124382 = motor step 97173.4 = 60.7334 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:30:02.908 -07 000000458 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:30:02.908 -07 000000458 INF: Y Motor: Moving 1343 steps-20
17-03-17 22:30:02.908 -07 000000561 INF: FPGA: Xmit ZDACW 38917\n [Z Motor]
17-03-17 22:30:02.908 -07 000000618 INF: FPGA: Recv ZDACW
17-03-17 22:30:02.918 -07 000000561 INF: FPGA: 'ZDACW 38917' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-17 22:30:02.918 -07 000000486 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:30:02.928 -07 000000458 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:30:02.938 -07 000000561 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:30:02.938 -07 000000476 INF: FPGA: Recv ZDACR 38917
17-03-17 22:30:02.948 -07 000000561 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:30:02.948 -07 000000561 INF: Z Motor: MoveAbsStepped took 48 ms (did NOT wait for settling yet))
17-03-17 22:30:02.958 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 22:30:02.958 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 22:30:02.958 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:30:02.958 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 382 ms.
17-03-17 22:30:02.958 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 22:30:02.958 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:30:02.968 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:30:02.968 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-17 22:30:02.968 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 22:30:02.978 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 22:30:03.118 -07 000000561 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:30:03.118 -07 000000486 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 218 ms overall
17-03-17 22:30:03.298 -07 000000626 INF: FPGA: Recv YMVTILE
17-03-17 22:30:03.298 -07 000000458 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 398 ms overall
17-03-17 22:30:03.348 -07 000000458 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:30:03.348 -07 000000476 INF: FPGA: Recv YRDPOS 126083
17-03-17 22:30:03.358 -07 000000458 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:30:03.358 -07 000000458 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:30:03.358 -07 000000458 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-17 22:30:03.358 -07 000000458 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.839 mm, average velocity = 2.109 mm/sec
17-03-17 22:30:04.308 -07 000000458 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:30:04.308 -07 000000448 INF: FPGA: Recv YRDPOS 126083
17-03-17 22:30:04.318 -07 000000458 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:30:04.318 -07 000000458 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:30:04.338 -07 000000458 INF: Y Motor: After move to 61.572609, error = -0.008644, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:30:04.338 -07 000000458 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:30:04.338 -07 000000458 INF: Y Motor: Moved to 61.5640 after 1445 ms (table move)
17-03-17 22:30:04.338 -07 000000627 INF: Z Motor: EndOfMoveAbsStepped: target = -0.178151 mm (DAC = 38917)
17-03-17 22:30:04.348 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:04.348 -07 000000448 INF: FPGA: Recv ZSGSRD 37029
17-03-17 22:30:04.358 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:30:04.358 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:04.358 -07 000000448 INF: FPGA: Recv ZSGSRD 37030
17-03-17 22:30:04.368 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:04.368 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:04.368 -07 000000448 INF: FPGA: Recv ZSGSRD 37026
17-03-17 22:30:04.378 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:04.378 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:04.378 -07 000000486 INF: FPGA: Recv ZSGSRD 37019
17-03-17 22:30:04.388 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:04.388 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:04.388 -07 000000486 INF: FPGA: Recv ZSGSRD 37018
17-03-17 22:30:04.398 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:04.398 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:04.398 -07 000000458 INF: FPGA: Recv ZSGSRD 37025
17-03-17 22:30:04.408 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:30:04.408 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:04.408 -07 000000448 INF: FPGA: Recv ZSGSRD 37015
17-03-17 22:30:04.418 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:04.418 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:04.418 -07 000000448 INF: FPGA: Recv ZSGSRD 37018
17-03-17 22:30:04.428 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:04.428 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:04.428 -07 000000486 INF: FPGA: Recv ZSGSRD 37012
17-03-17 22:30:04.438 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:04.438 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:04.438 -07 000000448 INF: FPGA: Recv ZSGSRD 37032
17-03-17 22:30:04.448 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:04.448 -07 000000627 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:30:04.448 -07 000000448 INF: FPGA: Recv ZPIEZORD 33388
17-03-17 22:30:04.458 -07 000000627 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:04.458 -07 000000627 INF: Z Motor: Piezo is near 51.3 V (nominally 0 to 100 V), expect near 59.4 V, since DAC is at 5.938 V. Piezo Error = -8.1 V.
17-03-17 22:30:04.458 -07 000000627 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.2 um, Read 10 ADC samples: Avg = 37022 (-177.3 uncal um), Error = 0.9 uncal um, Median = 37022 (-177.3 uncal um), StdDev = 7 (0.0 uncal um), Range = 20 (0.1 uncal um), Min = 37012 (-177.2 uncal um), Max = 37032 (-177.3 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-17 22:30:04.458 -07 000000627 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37022, posNoise = 10, negNoise = 10
17-03-17 22:30:04.458 -07 000000627 INF: Z Motor: After move to -0.178151, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:30:04.458 -07 000000627 INF: Z Motor: Settle wait time = 1448 ms, measure time = 112 ms (allowed 150 ms), total time = 1560 ms
17-03-17 22:30:04.458 -07 000000627 INF: Z Motor: Waiting extra 38 ms after reading position to reach expected total of 150 ms
17-03-17 22:30:04.498 -07 000000627 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1602 ms
17-03-17 22:30:04.498 -07 000000627 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:30:04.498 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:30:04.498 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:30:04.498 -07 000000458 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:30:04.498 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:30:04.498 -07 000000448 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:30:04.498 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:30:04.498 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 22:30:04.498 -07 000000448 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:30:04.498 -07 000000448 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:30:04.498 -07 000000448 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:30:04.508 -07 000000448 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-17 22:30:04.508 -07 000000448 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-17 22:30:04.518 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:30:04.558 -07 000000448 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 64, FrontChillerTemperature: 4.016692,
17-03-17 22:30:04.558 -07 000000448 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:30:04.758 -07 000000448 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:30:04.758 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:30:04.758 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:30:04.768 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 22:30:04.798 -07 000000458 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:30:04.798 -07 000000448 INF: FPGA: Recv CAMSNAP
17-03-17 22:30:04.798 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 284 ms overall
17-03-17 22:30:04.888 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 125 ms.
17-03-17 22:30:04.888 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:30:04.888 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:30:04.888 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 127 ms.
17-03-17 22:30:04.998 -07 000000486 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:30:04.998 -07 000000627 INF: Autofocus start
17-03-17 22:30:04.998 -07 000000627 INF: MeasureProfile start
17-03-17 22:30:04.998 -07 000000448 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:30:05.008 -07 000000486 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:30:05.008 -07 000000486 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:30:05.008 -07 000000627 INF: MeasureProfile done
17-03-17 22:30:05.008 -07 000000627 INF: X=48  Z correction [um]=0.1739867
17-03-17 22:30:05.008 -07 000000627 INF: Autofocus finished
17-03-17 22:30:05.208 -07 000000431 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:30:05.208 -07 000000486 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:30:05.208 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.56396484375, Z-position -0.178160533923409. ----------
17-03-17 22:30:05.208 -07 000000610 INF: Cycle	64	Tile	3	Exposure Settings		A	454	G	218	T	218	C	454
17-03-17 22:30:05.208 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37467, sync = True, waitForSettling = True)
17-03-17 22:30:05.218 -07 000000610 INF: Z Motor: Moving to -0.171513 mm, started at -0.178161 mm, distance = 6.65 um
17-03-17 22:30:05.218 -07 000000610 INF: FPGA: Xmit ZDACW 37467\n [Z Motor]
17-03-17 22:30:05.218 -07 000000448 INF: FPGA: Recv ZDACW
17-03-17 22:30:05.228 -07 000000610 INF: FPGA: 'ZDACW 37467' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:05.228 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:30:05.228 -07 000000429 INF: FPGA: Recv ZDACR 37467
17-03-17 22:30:05.238 -07 000000610 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:05.238 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:30:05.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:05.388 -07 000000626 INF: FPGA: Recv ZSGSRD 35992
17-03-17 22:30:05.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:30:05.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:05.398 -07 000000429 INF: FPGA: Recv ZSGSRD 35992
17-03-17 22:30:05.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:05.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:05.408 -07 000000486 INF: FPGA: Recv ZSGSRD 35989
17-03-17 22:30:05.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:05.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:05.418 -07 000000627 INF: FPGA: Recv ZSGSRD 35984
17-03-17 22:30:05.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:05.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:05.428 -07 000000448 INF: FPGA: Recv ZSGSRD 35992
17-03-17 22:30:05.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:05.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:05.438 -07 000000561 INF: FPGA: Recv ZSGSRD 35992
17-03-17 22:30:05.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:05.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:05.448 -07 000000486 INF: FPGA: Recv ZSGSRD 35993
17-03-17 22:30:05.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:05.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:05.458 -07 000000627 INF: FPGA: Recv ZSGSRD 35986
17-03-17 22:30:05.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:05.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:05.468 -07 000000458 INF: FPGA: Recv ZSGSRD 35986
17-03-17 22:30:05.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:05.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:05.478 -07 000000431 INF: FPGA: Recv ZSGSRD 35990
17-03-17 22:30:05.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:05.488 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:30:05.488 -07 000000486 INF: FPGA: Recv ZPIEZORD 32031
17-03-17 22:30:05.498 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:05.498 -07 000000610 INF: Z Motor: Piezo is near 48.4 V (nominally 0 to 100 V), expect near 57.2 V, since DAC is at 5.717 V. Piezo Error = -8.7 V.
17-03-17 22:30:05.498 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.5 um, Read 10 ADC samples: Avg = 35990 (-170.7 uncal um), Error = 0.9 uncal um, Median = 35991 (-170.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35984 (-170.6 uncal um), Max = 35993 (-170.7 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 22:30:05.498 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35990, posNoise = 3, negNoise = 6
17-03-17 22:30:05.498 -07 000000610 INF: Z Motor: After move to -0.171513, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:30:05.498 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 22:30:05.498 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:30:05.498 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:30:05.498 -07 000000429 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:30:05.498 -07 000000431 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:30:05.498 -07 000000486 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:30:05.498 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:30:05.498 -07 000000458 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:30:05.498 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:30:05.498 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:30:05.498 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:30:05.498 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:30:05.498 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:30:05.498 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:30:05.498 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:30:05.508 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:30:05.508 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:30:05.518 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 22:30:05.518 -07 000000486 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 22:30:05.518 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 22:30:05.518 -07 000000458 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 22:30:05.518 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 454 454 218 218 37644 150\n [Camera]
17-03-17 22:30:05.718 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:30:06.178 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 646
17-03-17 22:30:06.178 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 646
17-03-17 22:30:06.178 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:30:06.178 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 646
17-03-17 22:30:06.178 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 646
17-03-17 22:30:06.178 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:30:06.178 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:30:06.178 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 22:30:06.188 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:30:06.188 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 1458343128, 0x0, 418435064) start.
17-03-17 22:30:06.368 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37644 839
17-03-17 22:30:06.518 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP turning grn on 989
17-03-17 22:30:06.578 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 392 ms.
17-03-17 22:30:06.578 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 22:30:06.578 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:30:06.578 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:30:06.578 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 22:30:06.578 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 1458343128, 0x0, 418435064) end. Duration was 394 ms.
17-03-17 22:30:06.578 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 22:30:06.578 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:30:06.588 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:30:06.588 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-17 22:30:06.738 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1207
17-03-17 22:30:06.738 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1207
17-03-17 22:30:06.738 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:30:06.738 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1207
17-03-17 22:30:06.738 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1207
17-03-17 22:30:06.738 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:30:06.738 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:30:06.738 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 22:30:06.748 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:30:06.748 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-17 22:30:06.928 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP 1400
17-03-17 22:30:06.928 -07 000000429 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:30:06.928 -07 000000610 INF: FPGA: 'CAMDBLSNAP 454 454 218 218 37644 150' command took 2 ms to send, 1406 ms to get response, and 1409 ms overall
17-03-17 22:30:06.928 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 22:30:06.928 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.56396484375, Z-Position -0.171530746993112. ------
17-03-17 22:30:06.938 -07 000000458 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:30:06.938 -07 000000627 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.17786 mm
17-03-17 22:30:06.938 -07 000000627 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:30:06.938 -07 000000429 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-17 22:30:06.938 -07 000000429 INF: Y Motor: Moving to 62.4026 mm, started at 61.5640 mm, delta = 0.8386 mm
17-03-17 22:30:06.938 -07 000000431 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:30:06.938 -07 000000448 INF: Z Motor: Entering MoveAbsStepped (DAC = 38853, sync = True, waitForSettling = False)
17-03-17 22:30:06.938 -07 000000448 INF: Z Motor: Moving to -0.177858 mm, started at -0.171531 mm, distance = -6.33 um
17-03-17 22:30:06.948 -07 000000458 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:30:06.948 -07 000000448 INF: FPGA: Xmit ZDACW 38853\n [Z Motor]
17-03-17 22:30:06.948 -07 000000626 INF: FPGA: Recv ZDACW
17-03-17 22:30:06.958 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:30:06.958 -07 000000448 INF: FPGA: 'ZDACW 38853' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 22:30:06.958 -07 000000476 INF: FPGA: Recv YRDPOS 126083
17-03-17 22:30:06.968 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-17 22:30:06.968 -07 000000429 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:30:06.968 -07 000000429 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:30:06.968 -07 000000429 INF: Y Motor: Moving 1342 steps-18
17-03-17 22:30:06.968 -07 000000458 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:30:06.978 -07 000000448 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:30:06.978 -07 000000462 INF: FPGA: Recv ZDACR 38853
17-03-17 22:30:06.978 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:30:06.978 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 63. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1016, R2=1046, Total=2062. Warn if over 250 bubbles per interval.
17-03-17 22:30:06.988 -07 000000448 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:30:06.988 -07 000000448 INF: Z Motor: MoveAbsStepped took 44 ms (did NOT wait for settling yet))
17-03-17 22:30:06.988 -07 000000429 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:30:07.138 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 396 ms.
17-03-17 22:30:07.138 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 22:30:07.138 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:30:07.138 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 394 ms.
17-03-17 22:30:07.138 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 22:30:07.138 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:30:07.138 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:30:07.148 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 22:30:07.148 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-17 22:30:07.148 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-17 22:30:07.168 -07 000000448 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:30:07.168 -07 000000458 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 193 ms to get response, and 223 ms overall
17-03-17 22:30:07.358 -07 000000424 INF: FPGA: Recv YMVTILE
17-03-17 22:30:07.358 -07 000000429 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 398 ms overall
17-03-17 22:30:07.398 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:30:07.408 -07 000000448 INF: FPGA: Recv YRDPOS 127786
17-03-17 22:30:07.408 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 22:30:07.408 -07 000000429 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:30:07.408 -07 000000429 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-17 22:30:07.408 -07 000000429 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.839 mm, average velocity = 2.107 mm/sec
17-03-17 22:30:08.358 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:30:08.358 -07 000000551 INF: FPGA: Recv YRDPOS 127786
17-03-17 22:30:08.368 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:30:08.368 -07 000000429 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:30:08.388 -07 000000429 INF: Y Motor: After move to 62.402607, error = -0.007099, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:30:08.388 -07 000000429 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:30:08.388 -07 000000429 INF: Y Motor: Moved to 62.3955 after 1449 ms (table move)
17-03-17 22:30:08.388 -07 000000627 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177858 mm (DAC = 38853)
17-03-17 22:30:08.388 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:08.398 -07 000000626 INF: FPGA: Recv ZSGSRD 36981
17-03-17 22:30:08.398 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 22:30:08.398 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:08.398 -07 000000429 INF: FPGA: Recv ZSGSRD 36971
17-03-17 22:30:08.408 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:30:08.408 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:08.408 -07 000000626 INF: FPGA: Recv ZSGSRD 36971
17-03-17 22:30:08.418 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:08.418 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:08.418 -07 000000424 INF: FPGA: Recv ZSGSRD 36985
17-03-17 22:30:08.428 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:08.428 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:08.428 -07 000000429 INF: FPGA: Recv ZSGSRD 36972
17-03-17 22:30:08.438 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:08.438 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:08.438 -07 000000462 INF: FPGA: Recv ZSGSRD 36975
17-03-17 22:30:08.448 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:08.448 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:08.448 -07 000000431 INF: FPGA: Recv ZSGSRD 36975
17-03-17 22:30:08.458 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:08.458 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:08.458 -07 000000431 INF: FPGA: Recv ZSGSRD 36968
17-03-17 22:30:08.468 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:08.468 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:08.468 -07 000000431 INF: FPGA: Recv ZSGSRD 36975
17-03-17 22:30:08.478 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:08.478 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:08.478 -07 000000431 INF: FPGA: Recv ZSGSRD 36972
17-03-17 22:30:08.488 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:08.488 -07 000000627 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:30:08.488 -07 000000431 INF: FPGA: Recv ZPIEZORD 33373
17-03-17 22:30:08.498 -07 000000627 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:08.498 -07 000000627 INF: Z Motor: Piezo is near 51.3 V (nominally 0 to 100 V), expect near 59.3 V, since DAC is at 5.929 V. Piezo Error = -8.0 V.
17-03-17 22:30:08.498 -07 000000627 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.9 um, Read 10 ADC samples: Avg = 36974 (-177.0 uncal um), Error = 0.9 uncal um, Median = 36974 (-177.0 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 36968 (-176.9 uncal um), Max = 36985 (-177.0 uncal um), Pos Noise = 11 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 22:30:08.498 -07 000000627 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36974, posNoise = 11, negNoise = 6
17-03-17 22:30:08.498 -07 000000627 INF: Z Motor: After move to -0.177858, error = 0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:30:08.498 -07 000000627 INF: Z Motor: Settle wait time = 1451 ms, measure time = 103 ms (allowed 150 ms), total time = 1554 ms
17-03-17 22:30:08.498 -07 000000627 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 22:30:08.548 -07 000000627 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1607 ms
17-03-17 22:30:08.548 -07 000000627 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:30:08.548 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:30:08.548 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:30:08.548 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:30:08.548 -07 000000431 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:30:08.548 -07 000000627 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:30:08.548 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:30:08.558 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:30:08.558 -07 000000627 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:30:08.558 -07 000000627 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:30:08.558 -07 000000627 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:30:08.568 -07 000000627 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 22:30:08.568 -07 000000627 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-17 22:30:08.568 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:30:08.608 -07 000000431 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:30:08.808 -07 000000627 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:30:08.808 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:30:08.808 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:30:08.818 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 594000200, 0x0, 559484976) start.
17-03-17 22:30:08.848 -07 000000627 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:30:08.848 -07 000000431 INF: FPGA: Recv CAMSNAP
17-03-17 22:30:08.848 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 285 ms overall
17-03-17 22:30:08.938 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 594000200, 0x0, 559484976) end. Duration was 119 ms.
17-03-17 22:30:08.938 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:30:08.938 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 22:30:08.938 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 123 ms.
17-03-17 22:30:08.948 -07 000000627 INF: Autofocus start
17-03-17 22:30:08.948 -07 000000627 INF: MeasureProfile start
17-03-17 22:30:08.948 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:30:08.968 -07 000000627 INF: MeasureProfile done
17-03-17 22:30:08.968 -07 000000627 INF: X=16  Z correction [um]=0.01042744
17-03-17 22:30:08.968 -07 000000627 INF: Autofocus finished
17-03-17 22:30:09.528 -07 000000551 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:30:09.528 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 570 ms to get response, and 575 ms overall
17-03-17 22:30:09.528 -07 000000431 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:30:09.728 -07 000000551 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:30:09.728 -07 000000431 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 204 ms overall
17-03-17 22:30:09.728 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.3955078125, Z-position -0.177852171740605. ----------
17-03-17 22:30:09.738 -07 000000610 INF: Cycle	64	Tile	4	Exposure Settings		A	454	G	218	T	218	C	454
17-03-17 22:30:09.738 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37368, sync = True, waitForSettling = True)
17-03-17 22:30:09.738 -07 000000610 INF: Z Motor: Moving to -0.171060 mm, started at -0.177852 mm, distance = 6.79 um
17-03-17 22:30:09.738 -07 000000610 INF: FPGA: Xmit ZDACW 37368\n [Z Motor]
17-03-17 22:30:09.738 -07 000000431 INF: FPGA: Recv ZDACW
17-03-17 22:30:09.748 -07 000000610 INF: FPGA: 'ZDACW 37368' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:30:09.748 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:30:09.748 -07 000000551 INF: FPGA: Recv ZDACR 37368
17-03-17 22:30:09.758 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:09.758 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:30:09.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:09.918 -07 000000431 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 64, FrontChillerTemperature: 3.979922,
17-03-17 22:30:09.918 -07 000000431 INF: FPGA: Recv ZSGSRD 35924
17-03-17 22:30:09.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 20 ms overall
17-03-17 22:30:09.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:09.948 -07 000000551 INF: FPGA: Recv ZSGSRD 35912
17-03-17 22:30:09.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:30:09.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:09.958 -07 000000431 INF: FPGA: Recv ZSGSRD 35917
17-03-17 22:30:09.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:09.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:09.978 -07 000000551 INF: FPGA: Recv ZSGSRD 35918
17-03-17 22:30:09.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:30:10.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:10.008 -07 000000429 INF: FPGA: Recv ZSGSRD 35918
17-03-17 22:30:10.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:30:10.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:10.018 -07 000000431 INF: FPGA: Recv ZSGSRD 35918
17-03-17 22:30:10.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:10.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:10.028 -07 000000458 INF: FPGA: Recv ZSGSRD 35923
17-03-17 22:30:10.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:10.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:10.038 -07 000000551 INF: FPGA: Recv ZSGSRD 35918
17-03-17 22:30:10.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:10.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:10.048 -07 000000458 INF: FPGA: Recv ZSGSRD 35920
17-03-17 22:30:10.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:10.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:10.058 -07 000000618 INF: FPGA: Recv ZSGSRD 35916
17-03-17 22:30:10.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:10.068 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:30:10.068 -07 000000486 INF: FPGA: Recv ZPIEZORD 31980
17-03-17 22:30:10.078 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:10.078 -07 000000610 INF: Z Motor: Piezo is near 48.3 V (nominally 0 to 100 V), expect near 57.0 V, since DAC is at 5.702 V. Piezo Error = -8.7 V.
17-03-17 22:30:10.078 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.1 um, Read 10 ADC samples: Avg = 35918 (-170.2 uncal um), Error = 0.9 uncal um, Median = 35918 (-170.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35912 (-170.2 uncal um), Max = 35924 (-170.2 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 22:30:10.078 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35918, posNoise = 6, negNoise = 6
17-03-17 22:30:10.078 -07 000000610 INF: Z Motor: After move to -0.171060, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:30:10.078 -07 000000610 INF: Z Motor: MoveAbsStepped took 338 ms)
17-03-17 22:30:10.078 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:30:10.078 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:30:10.078 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:30:10.078 -07 000000448 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:30:10.078 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:30:10.078 -07 000000551 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:30:10.078 -07 000000486 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:30:10.078 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:30:10.078 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:30:10.078 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:30:10.078 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 22:30:10.078 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:30:10.078 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:30:10.078 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:30:10.088 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:30:10.088 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:30:10.088 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 22:30:10.088 -07 000000448 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 22:30:10.098 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 22:30:10.098 -07 000000486 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 22:30:10.098 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 454 454 218 218 37545 150\n [Camera]
17-03-17 22:30:10.298 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:30:10.748 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 646
17-03-17 22:30:10.748 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 646
17-03-17 22:30:10.748 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:30:10.748 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:30:10.748 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 22:30:10.748 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 646
17-03-17 22:30:10.748 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 646
17-03-17 22:30:10.758 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:30:10.758 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:30:10.758 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 22:30:10.938 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37545 839
17-03-17 22:30:11.088 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP turning grn on 989
17-03-17 22:30:11.148 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 400 ms.
17-03-17 22:30:11.148 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 22:30:11.148 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:30:11.158 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 399 ms.
17-03-17 22:30:11.158 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 22:30:11.158 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:30:11.158 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:30:11.158 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 22:30:11.158 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:30:11.168 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-17 22:30:11.308 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1207
17-03-17 22:30:11.308 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1207
17-03-17 22:30:11.308 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:30:11.308 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:30:11.308 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-17 22:30:11.318 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1207
17-03-17 22:30:11.318 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1207
17-03-17 22:30:11.318 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:30:11.318 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:30:11.318 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 22:30:11.498 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP 1400
17-03-17 22:30:11.498 -07 000000486 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:30:11.498 -07 000000610 INF: FPGA: 'CAMDBLSNAP 454 454 218 218 37545 150' command took 2 ms to send, 1399 ms to get response, and 1407 ms overall
17-03-17 22:30:11.618 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 22:30:11.618 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.3955078125, Z-Position -0.171068203718905. ------
17-03-17 22:30:11.628 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:30:11.628 -07 000000486 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.17766 mm
17-03-17 22:30:11.628 -07 000000486 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:30:11.628 -07 000000626 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-17 22:30:11.628 -07 000000626 INF: Y Motor: Moving to 63.2326 mm, started at 62.3955 mm, delta = 0.8371 mm
17-03-17 22:30:11.628 -07 000000551 INF: Z Motor: Entering MoveAbsStepped (DAC = 38809, sync = True, waitForSettling = False)
17-03-17 22:30:11.628 -07 000000551 INF: Z Motor: Moving to -0.177656 mm, started at -0.171068 mm, distance = -6.59 um
17-03-17 22:30:11.628 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:30:11.638 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:30:11.638 -07 000000618 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:30:11.648 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:30:11.648 -07 000000431 INF: FPGA: Recv YRDPOS 127786
17-03-17 22:30:11.658 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-17 22:30:11.658 -07 000000626 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:30:11.658 -07 000000551 INF: FPGA: Xmit ZDACW 38809\n [Z Motor]
17-03-17 22:30:11.658 -07 000000626 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:30:11.658 -07 000000626 INF: Y Motor: Moving 1339 steps-15
17-03-17 22:30:11.658 -07 000000429 INF: FPGA: Recv ZDACW
17-03-17 22:30:11.668 -07 000000551 INF: FPGA: 'ZDACW 38809' command took 0 ms to send, 0 ms to get response, and 33 ms overall
17-03-17 22:30:11.668 -07 000000626 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:30:11.678 -07 000000551 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:30:11.678 -07 000000431 INF: FPGA: Recv ZDACR 38809
17-03-17 22:30:11.688 -07 000000551 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:30:11.688 -07 000000551 INF: Z Motor: MoveAbsStepped took 53 ms (did NOT wait for settling yet))
17-03-17 22:30:11.718 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 405 ms.
17-03-17 22:30:11.718 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 22:30:11.718 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:30:11.718 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 405 ms.
17-03-17 22:30:11.718 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-17 22:30:11.718 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:30:11.728 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:30:11.728 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 22:30:11.728 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 413 ms.
17-03-17 22:30:11.728 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-17 22:30:11.838 -07 000000462 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:30:11.838 -07 000000618 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:30:11.978 -07 000000551 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:30:11.978 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 63. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1016, R2=1046, Total=2062. Warn if over 250 bubbles per interval.
17-03-17 22:30:12.038 -07 000000429 INF: FPGA: Recv YMVTILE
17-03-17 22:30:12.038 -07 000000626 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-17 22:30:12.078 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:30:12.088 -07 000000012 INF: FPGA: Recv YRDPOS 129483
17-03-17 22:30:12.088 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:30:12.088 -07 000000626 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:30:12.088 -07 000000626 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-17 22:30:12.088 -07 000000626 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.837 mm, average velocity = 2.163 mm/sec
17-03-17 22:30:13.038 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:30:13.228 -07 000000431 INF: FPGA: Recv YRDPOS 129483
17-03-17 22:30:13.228 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 188 ms to get response, and 198 ms overall
17-03-17 22:30:13.238 -07 000000626 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:30:13.278 -07 000000626 INF: Y Motor: After move to 63.232609, error = -0.008488, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:30:13.278 -07 000000626 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:30:13.278 -07 000000626 INF: Y Motor: Moved to 63.2241 after 1646 ms (table move)
17-03-17 22:30:13.278 -07 000000486 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177656 mm (DAC = 38809)
17-03-17 22:30:13.278 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:13.278 -07 000000626 INF: FPGA: Recv ZSGSRD 36948
17-03-17 22:30:13.288 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 22:30:13.288 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:13.288 -07 000000626 INF: FPGA: Recv ZSGSRD 36942
17-03-17 22:30:13.298 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:13.298 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:13.298 -07 000000626 INF: FPGA: Recv ZSGSRD 36942
17-03-17 22:30:13.308 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:13.308 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:13.308 -07 000000626 INF: FPGA: Recv ZSGSRD 36942
17-03-17 22:30:13.318 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:13.318 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:13.318 -07 000000561 INF: FPGA: Recv ZSGSRD 36940
17-03-17 22:30:13.328 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:13.328 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:13.328 -07 000000561 INF: FPGA: Recv ZSGSRD 36948
17-03-17 22:30:13.338 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:13.338 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:13.338 -07 000000561 INF: FPGA: Recv ZSGSRD 36948
17-03-17 22:30:13.348 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:13.348 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:13.348 -07 000000448 INF: FPGA: Recv ZSGSRD 36945
17-03-17 22:30:13.358 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:13.358 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:13.358 -07 000000561 INF: FPGA: Recv ZSGSRD 36950
17-03-17 22:30:13.368 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:13.368 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:13.368 -07 000000448 INF: FPGA: Recv ZSGSRD 36943
17-03-17 22:30:13.378 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:13.378 -07 000000486 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:30:13.378 -07 000000462 INF: FPGA: Recv ZPIEZORD 33338
17-03-17 22:30:13.388 -07 000000486 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:13.388 -07 000000486 INF: Z Motor: Piezo is near 51.2 V (nominally 0 to 100 V), expect near 59.2 V, since DAC is at 5.922 V. Piezo Error = -8.0 V.
17-03-17 22:30:13.388 -07 000000486 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.7 um, Read 10 ADC samples: Avg = 36945 (-176.8 uncal um), Error = 0.9 uncal um, Median = 36944 (-176.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 36940 (-176.7 uncal um), Max = 36950 (-176.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 22:30:13.388 -07 000000486 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36945, posNoise = 5, negNoise = 5
17-03-17 22:30:13.388 -07 000000486 INF: Z Motor: After move to -0.177656, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:30:13.388 -07 000000486 INF: Z Motor: Settle wait time = 1648 ms, measure time = 107 ms (allowed 150 ms), total time = 1755 ms
17-03-17 22:30:13.388 -07 000000486 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 22:30:13.438 -07 000000486 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1807 ms
17-03-17 22:30:13.438 -07 000000486 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:30:13.438 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:30:13.438 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:30:13.438 -07 000000448 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:30:13.438 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:30:13.438 -07 000000012 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:30:13.438 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:30:13.438 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:30:13.438 -07 000000012 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:30:13.448 -07 000000012 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:30:13.448 -07 000000012 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:30:13.448 -07 000000012 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 22:30:13.448 -07 000000012 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 22:30:13.458 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:30:13.498 -07 000000431 INF: FPGA: Recv @CAMSNAP turning led on 41
17-03-17 22:30:13.698 -07 000000618 INF: FPGA: Recv @CAMSNAP img rdy 241
17-03-17 22:30:13.698 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 241
17-03-17 22:30:13.698 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:30:13.708 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 22:30:13.738 -07 000000551 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:30:13.738 -07 000000618 INF: FPGA: Recv CAMSNAP
17-03-17 22:30:13.738 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 284 ms overall
17-03-17 22:30:13.818 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 22:30:13.818 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:30:13.818 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:30:13.818 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-17 22:30:13.838 -07 000000458 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:30:13.838 -07 000000486 INF: Autofocus start
17-03-17 22:30:13.838 -07 000000486 INF: MeasureProfile start
17-03-17 22:30:13.838 -07 000000429 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:30:13.848 -07 000000458 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:30:13.848 -07 000000458 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:30:13.848 -07 000000486 INF: MeasureProfile done
17-03-17 22:30:13.848 -07 000000486 INF: X=16  Z correction [um]=0.01042744
17-03-17 22:30:13.848 -07 000000486 INF: Autofocus finished
17-03-17 22:30:14.048 -07 000000431 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:30:14.048 -07 000000458 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:30:14.048 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.22412109375, Z-position -0.177665869588493. ----------
17-03-17 22:30:14.048 -07 000000610 INF: Cycle	64	Tile	5	Exposure Settings		A	454	G	218	T	218	C	454
17-03-17 22:30:14.058 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37324, sync = True, waitForSettling = True)
17-03-17 22:30:14.058 -07 000000610 INF: Z Motor: Moving to -0.170858 mm, started at -0.177666 mm, distance = 6.81 um
17-03-17 22:30:14.058 -07 000000610 INF: FPGA: Xmit ZDACW 37324\n [Z Motor]
17-03-17 22:30:14.058 -07 000000551 INF: FPGA: Recv ZDACW
17-03-17 22:30:14.068 -07 000000610 INF: FPGA: 'ZDACW 37324' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:14.068 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:30:14.068 -07 000000551 INF: FPGA: Recv ZDACR 37324
17-03-17 22:30:14.078 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:14.078 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:30:14.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:14.228 -07 000000458 INF: FPGA: Recv ZSGSRD 35887
17-03-17 22:30:14.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:30:14.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:14.238 -07 000000458 INF: FPGA: Recv ZSGSRD 35886
17-03-17 22:30:14.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:14.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:14.248 -07 000000458 INF: FPGA: Recv ZSGSRD 35887
17-03-17 22:30:14.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:14.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:14.258 -07 000000458 INF: FPGA: Recv ZSGSRD 35884
17-03-17 22:30:14.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:14.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:14.268 -07 000000458 INF: FPGA: Recv ZSGSRD 35886
17-03-17 22:30:14.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:14.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:14.278 -07 000000458 INF: FPGA: Recv ZSGSRD 35889
17-03-17 22:30:14.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:14.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:14.288 -07 000000458 INF: FPGA: Recv ZSGSRD 35888
17-03-17 22:30:14.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:14.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:14.298 -07 000000458 INF: FPGA: Recv ZSGSRD 35890
17-03-17 22:30:14.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:14.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:14.308 -07 000000458 INF: FPGA: Recv ZSGSRD 35886
17-03-17 22:30:14.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:14.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:14.318 -07 000000431 INF: FPGA: Recv ZSGSRD 35885
17-03-17 22:30:14.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:14.328 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:30:14.328 -07 000000561 INF: FPGA: Recv ZPIEZORD 31936
17-03-17 22:30:14.338 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:14.338 -07 000000610 INF: Z Motor: Piezo is near 48.2 V (nominally 0 to 100 V), expect near 57.0 V, since DAC is at 5.695 V. Piezo Error = -8.7 V.
17-03-17 22:30:14.338 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.9 um, Read 10 ADC samples: Avg = 35887 (-170.0 uncal um), Error = 0.9 uncal um, Median = 35886 (-170.0 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 35884 (-170.0 uncal um), Max = 35890 (-170.0 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 22:30:14.338 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35887, posNoise = 3, negNoise = 3
17-03-17 22:30:14.338 -07 000000610 INF: Z Motor: After move to -0.170858, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:30:14.338 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 22:30:14.338 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:30:14.338 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:30:14.338 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:30:14.338 -07 000000551 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:30:14.338 -07 000000458 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:30:14.338 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:30:14.338 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:30:14.338 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:30:14.338 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:30:14.338 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:30:14.338 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:30:14.338 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:30:14.338 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 22:30:14.338 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:30:14.348 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 22:30:14.348 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:30:14.348 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 22:30:14.348 -07 000000458 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 22:30:14.348 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 22:30:14.348 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 22:30:14.358 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 454 454 218 218 37501 150\n [Camera]
17-03-17 22:30:14.558 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:30:15.018 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 648
17-03-17 22:30:15.018 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 648
17-03-17 22:30:15.018 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:30:15.018 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 648
17-03-17 22:30:15.018 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 648
17-03-17 22:30:15.018 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:30:15.018 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:30:15.018 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 22:30:15.018 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:30:15.018 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-17 22:30:15.198 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37501 840
17-03-17 22:30:15.328 -07 000000551 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 64, FrontChillerTemperature: 3.975845,
17-03-17 22:30:15.348 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning grn on 989
17-03-17 22:30:15.408 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 392 ms.
17-03-17 22:30:15.408 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 22:30:15.408 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:30:15.418 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:30:15.418 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 22:30:15.418 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 394 ms.
17-03-17 22:30:15.418 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 22:30:15.418 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:30:15.418 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:30:15.428 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-17 22:30:15.568 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1207
17-03-17 22:30:15.568 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1207
17-03-17 22:30:15.568 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:30:15.568 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1207
17-03-17 22:30:15.568 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1207
17-03-17 22:30:15.578 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:30:15.588 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:30:15.588 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) start.
17-03-17 22:30:15.588 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:30:15.588 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start.
17-03-17 22:30:15.758 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP 1400
17-03-17 22:30:15.758 -07 000000429 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:30:15.758 -07 000000610 INF: FPGA: 'CAMDBLSNAP 454 454 218 218 37501 150' command took 2 ms to send, 1398 ms to get response, and 1406 ms overall
17-03-17 22:30:15.768 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 22:30:15.768 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.22412109375, Z-Position -0.17086905314251. ------
17-03-17 22:30:15.768 -07 000000458 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:30:15.768 -07 000000626 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.17726 mm
17-03-17 22:30:15.768 -07 000000626 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:30:15.768 -07 000000431 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-17 22:30:15.768 -07 000000431 INF: Y Motor: Moving to 64.0626 mm, started at 63.2241 mm, delta = 0.8385 mm
17-03-17 22:30:15.768 -07 000000561 INF: Z Motor: Entering MoveAbsStepped (DAC = 38722, sync = True, waitForSettling = False)
17-03-17 22:30:15.768 -07 000000561 INF: Z Motor: Moving to -0.177258 mm, started at -0.170869 mm, distance = -6.39 um
17-03-17 22:30:15.768 -07 000000448 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:30:15.888 -07 000000458 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 22:30:15.888 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:30:15.888 -07 000000486 INF: FPGA: Recv YRDPOS 129484
17-03-17 22:30:15.898 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 123 ms overall
17-03-17 22:30:15.898 -07 000000431 INF: Y Motor: Encoder = 129484 = motor step 101159.4 = 63.2246 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:30:15.898 -07 000000561 INF: FPGA: Xmit ZDACW 38722\n [Z Motor]
17-03-17 22:30:15.898 -07 000000486 INF: FPGA: Recv ZDACW
17-03-17 22:30:15.898 -07 000000431 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:30:15.898 -07 000000431 INF: Y Motor: Moving 1341 steps-17
17-03-17 22:30:15.908 -07 000000561 INF: FPGA: 'ZDACW 38722' command took 0 ms to send, 0 ms to get response, and 132 ms overall
17-03-17 22:30:15.908 -07 000000458 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:30:15.918 -07 000000431 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:30:15.928 -07 000000561 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:30:15.928 -07 000000448 INF: FPGA: Recv ZDACR 38722
17-03-17 22:30:15.938 -07 000000561 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:30:15.938 -07 000000561 INF: Z Motor: MoveAbsStepped took 163 ms (did NOT wait for settling yet))
17-03-17 22:30:15.978 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 397 ms.
17-03-17 22:30:15.978 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 22:30:15.978 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:30:15.978 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) end. Duration was 397 ms.
17-03-17 22:30:15.978 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 22:30:15.978 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:30:15.988 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:30:15.988 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 414 ms.
17-03-17 22:30:15.988 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:30:15.998 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 419 ms.
17-03-17 22:30:16.108 -07 000000462 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:30:16.108 -07 000000458 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 216 ms overall
17-03-17 22:30:16.288 -07 000000429 INF: FPGA: Recv YMVTILE
17-03-17 22:30:16.288 -07 000000431 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 393 ms overall
17-03-17 22:30:16.328 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:30:16.338 -07 000000429 INF: FPGA: Recv YRDPOS 131189
17-03-17 22:30:16.338 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 22:30:16.338 -07 000000431 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:30:16.338 -07 000000431 INF: Y Motor: Position error before settling (table move) = -11 encoder counts (-0.005 mm)
17-03-17 22:30:16.338 -07 000000431 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 393 ms, distance = 0.838 mm, average velocity = 2.134 mm/sec
17-03-17 22:30:16.978 -07 000000476 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:30:16.978 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 63. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1016, R2=1046, Total=2062. Warn if over 250 bubbles per interval.
17-03-17 22:30:17.288 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:30:17.288 -07 000000476 INF: FPGA: Recv YRDPOS 131189
17-03-17 22:30:17.298 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:30:17.298 -07 000000431 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:30:17.318 -07 000000431 INF: Y Motor: After move to 64.062607, error = -0.005478, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:30:17.318 -07 000000431 INF: Y Motor: Position error after settling (table move) = -11 encoder counts (-0.005 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:30:17.318 -07 000000431 INF: Y Motor: Moved to 64.0571 after 1546 ms (table move)
17-03-17 22:30:17.318 -07 000000626 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177258 mm (DAC = 38722)
17-03-17 22:30:17.318 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:17.318 -07 000000431 INF: FPGA: Recv ZSGSRD 36884
17-03-17 22:30:17.328 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:30:17.328 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:17.328 -07 000000431 INF: FPGA: Recv ZSGSRD 36886
17-03-17 22:30:17.338 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:17.338 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:17.338 -07 000000431 INF: FPGA: Recv ZSGSRD 36885
17-03-17 22:30:17.348 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:17.348 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:17.348 -07 000000551 INF: FPGA: Recv ZSGSRD 36885
17-03-17 22:30:17.358 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:17.358 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:17.358 -07 000000618 INF: FPGA: Recv ZSGSRD 36882
17-03-17 22:30:17.368 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:17.368 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:17.368 -07 000000486 INF: FPGA: Recv ZSGSRD 36890
17-03-17 22:30:17.378 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:17.378 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:17.378 -07 000000486 INF: FPGA: Recv ZSGSRD 36884
17-03-17 22:30:17.388 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:17.388 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:17.388 -07 000000486 INF: FPGA: Recv ZSGSRD 36882
17-03-17 22:30:17.398 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:17.398 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:17.398 -07 000000486 INF: FPGA: Recv ZSGSRD 36880
17-03-17 22:30:17.408 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:17.408 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:17.408 -07 000000462 INF: FPGA: Recv ZSGSRD 36881
17-03-17 22:30:17.418 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:17.418 -07 000000626 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:30:17.418 -07 000000476 INF: FPGA: Recv ZPIEZORD 33250
17-03-17 22:30:17.428 -07 000000626 INF: FPGA: 'ZPIEZORD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:17.428 -07 000000626 INF: Z Motor: Piezo is near 51.0 V (nominally 0 to 100 V), expect near 59.1 V, since DAC is at 5.909 V. Piezo Error = -8.1 V.
17-03-17 22:30:17.428 -07 000000626 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.3 um, Read 10 ADC samples: Avg = 36884 (-176.4 uncal um), Error = 0.9 uncal um, Median = 36884 (-176.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 36880 (-176.4 uncal um), Max = 36890 (-176.4 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 22:30:17.428 -07 000000626 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36884, posNoise = 6, negNoise = 4
17-03-17 22:30:17.428 -07 000000626 INF: Z Motor: After move to -0.177258, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:30:17.428 -07 000000626 INF: Z Motor: Settle wait time = 1549 ms, measure time = 104 ms (allowed 150 ms), total time = 1653 ms
17-03-17 22:30:17.428 -07 000000626 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 22:30:17.478 -07 000000626 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1705 ms
17-03-17 22:30:17.478 -07 000000626 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:30:17.478 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:30:17.478 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:30:17.478 -07 000000429 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:30:17.478 -07 000000458 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:30:17.478 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:30:17.478 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:30:17.478 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:30:17.478 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:30:17.488 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:30:17.488 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:30:17.498 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 22:30:17.498 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 22:30:17.498 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:30:17.548 -07 000000551 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:30:17.748 -07 000000551 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:30:17.748 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:30:17.748 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:30:17.748 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 22:30:17.788 -07 000000448 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:30:17.788 -07 000000462 INF: FPGA: Recv CAMSNAP
17-03-17 22:30:17.788 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 284 ms overall
17-03-17 22:30:17.858 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 22:30:17.858 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:30:17.858 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:30:17.858 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 116 ms.
17-03-17 22:30:17.888 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:30:17.888 -07 000000476 INF: Autofocus start
17-03-17 22:30:17.888 -07 000000476 INF: MeasureProfile start
17-03-17 22:30:17.888 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:30:17.898 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:30:17.898 -07 000000431 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:30:17.908 -07 000000476 INF: MeasureProfile done
17-03-17 22:30:17.908 -07 000000476 INF: X=16  Z correction [um]=0.01042744
17-03-17 22:30:17.908 -07 000000476 INF: Autofocus finished
17-03-17 22:30:18.098 -07 000000551 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:30:18.098 -07 000000431 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:30:18.098 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.05712890625, Z-position -0.177273992647846. ----------
17-03-17 22:30:18.098 -07 000000610 INF: Cycle	64	Tile	6	Exposure Settings		A	454	G	218	T	218	C	454
17-03-17 22:30:18.108 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37236, sync = True, waitForSettling = True)
17-03-17 22:30:18.108 -07 000000610 INF: Z Motor: Moving to -0.170455 mm, started at -0.177274 mm, distance = 6.82 um
17-03-17 22:30:18.108 -07 000000610 INF: FPGA: Xmit ZDACW 37236\n [Z Motor]
17-03-17 22:30:18.108 -07 000000626 INF: FPGA: Recv ZDACW
17-03-17 22:30:18.118 -07 000000610 INF: FPGA: 'ZDACW 37236' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:18.118 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:30:18.118 -07 000000012 INF: FPGA: Recv ZDACR 37236
17-03-17 22:30:18.128 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:18.128 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:30:18.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:18.278 -07 000000486 INF: FPGA: Recv ZSGSRD 35827
17-03-17 22:30:18.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:18.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:18.288 -07 000000476 INF: FPGA: Recv ZSGSRD 35828
17-03-17 22:30:18.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:18.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:18.298 -07 000000486 INF: FPGA: Recv ZSGSRD 35829
17-03-17 22:30:18.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:18.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:18.308 -07 000000618 INF: FPGA: Recv ZSGSRD 35819
17-03-17 22:30:18.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:18.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:18.318 -07 000000551 INF: FPGA: Recv ZSGSRD 35824
17-03-17 22:30:18.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:18.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:18.328 -07 000000431 INF: FPGA: Recv ZSGSRD 35829
17-03-17 22:30:18.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:18.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:18.338 -07 000000458 INF: FPGA: Recv ZSGSRD 35824
17-03-17 22:30:18.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:18.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:18.348 -07 000000561 INF: FPGA: Recv ZSGSRD 35828
17-03-17 22:30:18.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:18.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:18.358 -07 000000626 INF: FPGA: Recv ZSGSRD 35827
17-03-17 22:30:18.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:18.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:18.368 -07 000000618 INF: FPGA: Recv ZSGSRD 35830
17-03-17 22:30:18.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:18.378 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:30:18.378 -07 000000551 INF: FPGA: Recv ZPIEZORD 31848
17-03-17 22:30:18.388 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:18.388 -07 000000610 INF: Z Motor: Piezo is near 48.0 V (nominally 0 to 100 V), expect near 56.8 V, since DAC is at 5.682 V. Piezo Error = -8.8 V.
17-03-17 22:30:18.388 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.5 um, Read 10 ADC samples: Avg = 35826 (-169.6 uncal um), Error = 0.9 uncal um, Median = 35828 (-169.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35819 (-169.6 uncal um), Max = 35830 (-169.6 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 22:30:18.388 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35826, posNoise = 4, negNoise = 7
17-03-17 22:30:18.388 -07 000000610 INF: Z Motor: After move to -0.170455, error = -0.000022, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:30:18.388 -07 000000610 INF: Z Motor: MoveAbsStepped took 283 ms)
17-03-17 22:30:18.388 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:30:18.388 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:30:18.398 -07 000000486 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:30:18.398 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:30:18.398 -07 000000448 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:30:18.398 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:30:18.398 -07 000000431 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:30:18.398 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:30:18.398 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:30:18.398 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:30:18.398 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:30:18.398 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:30:18.398 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:30:18.408 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:30:18.408 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 6 ms.
17-03-17 22:30:18.408 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:30:18.418 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 12 ms.
17-03-17 22:30:18.418 -07 000000448 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 22:30:18.418 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 12 ms.
17-03-17 22:30:18.418 -07 000000431 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 22:30:18.418 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 454 454 218 218 37413 150\n [Camera]
17-03-17 22:30:18.618 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:30:19.078 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 646
17-03-17 22:30:19.078 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 646
17-03-17 22:30:19.078 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:30:19.078 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 646
17-03-17 22:30:19.078 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 646
17-03-17 22:30:19.078 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:30:19.078 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:30:19.078 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 22:30:19.088 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:30:19.088 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-17 22:30:19.268 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37413 839
17-03-17 22:30:19.418 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP turning grn on 989
17-03-17 22:30:19.458 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 374 ms.
17-03-17 22:30:19.458 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 374 ms.
17-03-17 22:30:19.458 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:30:19.458 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 373 ms.
17-03-17 22:30:19.458 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-17 22:30:19.458 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:30:19.458 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:30:19.458 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 22:30:19.468 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:30:19.468 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 22:30:19.638 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1207
17-03-17 22:30:19.638 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1207
17-03-17 22:30:19.638 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:30:19.638 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:30:19.638 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 22:30:19.638 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1207
17-03-17 22:30:19.638 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1207
17-03-17 22:30:19.638 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:30:19.638 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:30:19.648 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1458343128, 0x0, 418435064) start.
17-03-17 22:30:19.828 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP 1400
17-03-17 22:30:19.828 -07 000000458 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:30:19.828 -07 000000610 INF: FPGA: 'CAMDBLSNAP 454 454 218 218 37413 150' command took 3 ms to send, 1399 ms to get response, and 1409 ms overall
17-03-17 22:30:19.838 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 22:30:19.838 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.05712890625, Z-Position -0.170477176201863. ------
17-03-17 22:30:19.838 -07 000000448 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:30:19.838 -07 000000626 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.17694 mm
17-03-17 22:30:19.838 -07 000000626 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:30:19.838 -07 000000618 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-17 22:30:19.838 -07 000000618 INF: Y Motor: Moving to 64.8926 mm, started at 64.0571 mm, delta = 0.8355 mm
17-03-17 22:30:19.838 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 38652, sync = True, waitForSettling = False)
17-03-17 22:30:19.838 -07 000000431 INF: Z Motor: Moving to -0.176938 mm, started at -0.170477 mm, distance = -6.46 um
17-03-17 22:30:19.838 -07 000000429 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:30:19.848 -07 000000448 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:30:19.848 -07 000000431 INF: FPGA: Xmit ZDACW 38652\n [Z Motor]
17-03-17 22:30:19.848 -07 000000012 INF: FPGA: Recv ZDACW
17-03-17 22:30:19.858 -07 000000431 INF: FPGA: 'ZDACW 38652' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 22:30:19.858 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:30:19.858 -07 000000429 INF: FPGA: Recv YRDPOS 131189
17-03-17 22:30:19.868 -07 000000448 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:30:19.868 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-17 22:30:19.868 -07 000000618 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:30:19.868 -07 000000618 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:30:19.868 -07 000000618 INF: Y Motor: Moving 1337 steps-11
17-03-17 22:30:19.878 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:30:19.878 -07 000000561 INF: FPGA: Recv ZDACR 38652
17-03-17 22:30:19.888 -07 000000618 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:30:19.888 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-17 22:30:19.888 -07 000000431 INF: Z Motor: MoveAbsStepped took 45 ms (did NOT wait for settling yet))
17-03-17 22:30:20.038 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 398 ms.
17-03-17 22:30:20.038 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 22:30:20.038 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:30:20.038 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1458343128, 0x0, 418435064) end. Duration was 397 ms.
17-03-17 22:30:20.038 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 22:30:20.038 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:30:20.048 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:30:20.048 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 22:30:20.048 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-17 22:30:20.048 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-17 22:30:20.068 -07 000000551 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:30:20.068 -07 000000448 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 22:30:20.258 -07 000000561 INF: FPGA: Recv YMVTILE
17-03-17 22:30:20.258 -07 000000618 INF: FPGA: 'YMVTILE 1327' command took 2 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 22:30:20.298 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:30:20.308 -07 000000012 INF: FPGA: Recv YRDPOS 132872
17-03-17 22:30:20.308 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:30:20.308 -07 000000618 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:30:20.308 -07 000000618 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 22:30:20.308 -07 000000618 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.835 mm, average velocity = 2.104 mm/sec
17-03-17 22:30:20.698 -07 000000486 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 64, FrontChillerTemperature: 3.979922,
17-03-17 22:30:21.258 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:30:21.258 -07 000000561 INF: FPGA: Recv YRDPOS 132872
17-03-17 22:30:21.268 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:30:21.268 -07 000000618 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:30:21.288 -07 000000618 INF: Y Motor: After move to 64.892609, error = -0.013702, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:30:21.288 -07 000000618 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:30:21.288 -07 000000618 INF: Y Motor: Moved to 64.8789 after 1449 ms (table move)
17-03-17 22:30:21.288 -07 000000626 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176938 mm (DAC = 38652)
17-03-17 22:30:21.288 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:21.298 -07 000000618 INF: FPGA: Recv ZSGSRD 36833
17-03-17 22:30:21.298 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-17 22:30:21.298 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:21.298 -07 000000561 INF: FPGA: Recv ZSGSRD 36831
17-03-17 22:30:21.308 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:30:21.308 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:21.308 -07 000000561 INF: FPGA: Recv ZSGSRD 36828
17-03-17 22:30:21.318 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:21.318 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:21.318 -07 000000561 INF: FPGA: Recv ZSGSRD 36836
17-03-17 22:30:21.328 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:21.328 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:21.328 -07 000000551 INF: FPGA: Recv ZSGSRD 36834
17-03-17 22:30:21.338 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:21.338 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:21.338 -07 000000561 INF: FPGA: Recv ZSGSRD 36834
17-03-17 22:30:21.348 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:21.348 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:21.348 -07 000000551 INF: FPGA: Recv ZSGSRD 36838
17-03-17 22:30:21.358 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:21.358 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:21.358 -07 000000551 INF: FPGA: Recv ZSGSRD 36832
17-03-17 22:30:21.368 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:21.368 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:21.368 -07 000000429 INF: FPGA: Recv ZSGSRD 36824
17-03-17 22:30:21.378 -07 000000626 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:21.378 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:21.378 -07 000000429 INF: FPGA: Recv ZSGSRD 36826
17-03-17 22:30:21.388 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:21.388 -07 000000626 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:30:21.388 -07 000000551 INF: FPGA: Recv ZPIEZORD 33168
17-03-17 22:30:21.398 -07 000000626 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:21.398 -07 000000626 INF: Z Motor: Piezo is near 50.9 V (nominally 0 to 100 V), expect near 59.0 V, since DAC is at 5.898 V. Piezo Error = -8.1 V.
17-03-17 22:30:21.398 -07 000000626 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.9 um, Read 10 ADC samples: Avg = 36832 (-176.0 uncal um), Error = 0.9 uncal um, Median = 36832 (-176.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36824 (-176.0 uncal um), Max = 36838 (-176.1 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 22:30:21.398 -07 000000626 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36832, posNoise = 6, negNoise = 8
17-03-17 22:30:21.398 -07 000000626 INF: Z Motor: After move to -0.176938, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:30:21.398 -07 000000626 INF: Z Motor: Settle wait time = 1452 ms, measure time = 101 ms (allowed 150 ms), total time = 1553 ms
17-03-17 22:30:21.398 -07 000000626 INF: Z Motor: Waiting extra 49 ms after reading position to reach expected total of 150 ms
17-03-17 22:30:21.448 -07 000000626 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1606 ms
17-03-17 22:30:21.448 -07 000000626 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:30:21.448 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:30:21.448 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:30:21.448 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:30:21.448 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:30:21.448 -07 000000476 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:30:21.448 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:30:21.448 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:30:21.448 -07 000000476 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:30:21.458 -07 000000476 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:30:21.458 -07 000000476 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:30:21.468 -07 000000476 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 22:30:21.468 -07 000000476 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 22:30:21.468 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:30:21.518 -07 000000431 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:30:21.718 -07 000000626 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:30:21.718 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:30:21.718 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:30:21.718 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 594000200, 0x0, 559484976) start.
17-03-17 22:30:21.758 -07 000000448 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:30:21.758 -07 000000476 INF: FPGA: Recv CAMSNAP
17-03-17 22:30:21.758 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 284 ms overall
17-03-17 22:30:21.828 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 594000200, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 22:30:21.828 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:30:21.838 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:30:21.838 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-17 22:30:21.858 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:30:21.858 -07 000000486 INF: Autofocus start
17-03-17 22:30:21.858 -07 000000486 INF: MeasureProfile start
17-03-17 22:30:21.858 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:30:21.868 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:30:21.868 -07 000000462 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:30:21.878 -07 000000486 INF: MeasureProfile done
17-03-17 22:30:21.878 -07 000000486 INF: X=-80  Z correction [um]=-0.4885566
17-03-17 22:30:21.878 -07 000000486 INF: Autofocus finished
17-03-17 22:30:21.978 -07 000000431 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:30:21.978 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 63. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1016, R2=1046, Total=2062. Warn if over 250 bubbles per interval.
17-03-17 22:30:22.068 -07 000000429 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:30:22.068 -07 000000462 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:30:22.068 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87890625, Z-position -0.176939933616475. ----------
17-03-17 22:30:22.068 -07 000000610 INF: Cycle	64	Tile	7	Exposure Settings		A	454	G	218	T	218	C	454
17-03-17 22:30:22.078 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37057, sync = True, waitForSettling = True)
17-03-17 22:30:22.078 -07 000000610 INF: Z Motor: Moving to -0.169636 mm, started at -0.176940 mm, distance = 7.30 um
17-03-17 22:30:22.078 -07 000000610 INF: FPGA: Xmit ZDACW 37057\n [Z Motor]
17-03-17 22:30:22.078 -07 000000626 INF: FPGA: Recv ZDACW
17-03-17 22:30:22.088 -07 000000610 INF: FPGA: 'ZDACW 37057' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:30:22.088 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:30:22.088 -07 000000448 INF: FPGA: Recv ZDACR 37057
17-03-17 22:30:22.098 -07 000000610 INF: FPGA: 'ZDACR' command took 2 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:22.098 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:30:22.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:22.248 -07 000000012 INF: FPGA: Recv ZSGSRD 35701
17-03-17 22:30:22.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:30:22.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:22.258 -07 000000626 INF: FPGA: Recv ZSGSRD 35701
17-03-17 22:30:22.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:22.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:22.268 -07 000000012 INF: FPGA: Recv ZSGSRD 35699
17-03-17 22:30:22.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:22.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:22.278 -07 000000448 INF: FPGA: Recv ZSGSRD 35698
17-03-17 22:30:22.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:22.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:22.288 -07 000000486 INF: FPGA: Recv ZSGSRD 35698
17-03-17 22:30:22.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:22.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:22.298 -07 000000486 INF: FPGA: Recv ZSGSRD 35696
17-03-17 22:30:22.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:22.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:22.308 -07 000000486 INF: FPGA: Recv ZSGSRD 35684
17-03-17 22:30:22.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:22.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:22.318 -07 000000462 INF: FPGA: Recv ZSGSRD 35698
17-03-17 22:30:22.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:22.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:22.328 -07 000000462 INF: FPGA: Recv ZSGSRD 35695
17-03-17 22:30:22.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:22.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:22.338 -07 000000462 INF: FPGA: Recv ZSGSRD 35697
17-03-17 22:30:22.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:22.348 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:30:22.348 -07 000000618 INF: FPGA: Recv ZPIEZORD 31666
17-03-17 22:30:22.358 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:22.358 -07 000000610 INF: Z Motor: Piezo is near 47.6 V (nominally 0 to 100 V), expect near 56.5 V, since DAC is at 5.655 V. Piezo Error = -8.9 V.
17-03-17 22:30:22.358 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.6 um, Read 10 ADC samples: Avg = 35697 (-168.8 uncal um), Error = 0.9 uncal um, Median = 35698 (-168.8 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 35684 (-168.7 uncal um), Max = 35701 (-168.8 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 13 (0.1 uncal um)
17-03-17 22:30:22.358 -07 000000610 INF: Z Motor: ADC noise = 13, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35697, posNoise = 4, negNoise = 13
17-03-17 22:30:22.358 -07 000000610 INF: Z Motor: After move to -0.169636, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:30:22.358 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 22:30:22.358 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:30:22.358 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:30:22.358 -07 000000448 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:30:22.358 -07 000000551 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:30:22.358 -07 000000429 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:30:22.358 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:30:22.358 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:30:22.358 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:30:22.358 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:30:22.358 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:30:22.358 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:30:22.358 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:30:22.368 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:30:22.368 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:30:22.368 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:30:22.368 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:30:22.368 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 22:30:22.368 -07 000000551 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 22:30:22.378 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 22:30:22.378 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 22:30:22.378 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 454 454 218 218 37234 150\n [Camera]
17-03-17 22:30:22.578 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:30:23.028 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 646
17-03-17 22:30:23.028 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 646
17-03-17 22:30:23.028 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:30:23.028 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:30:23.028 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 2164362856, 0x0, 391868352) start.
17-03-17 22:30:23.038 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 646
17-03-17 22:30:23.038 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 646
17-03-17 22:30:23.038 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:30:23.038 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:30:23.038 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2199785120, 0x0, 418435064) start.
17-03-17 22:30:23.218 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37234 839
17-03-17 22:30:23.368 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning grn on 989
17-03-17 22:30:23.408 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 2164362856, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 22:30:23.408 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 22:30:23.408 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:30:23.408 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2199785120, 0x0, 418435064) end. Duration was 372 ms.
17-03-17 22:30:23.408 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-17 22:30:23.408 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:30:23.408 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:30:23.408 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 22:30:23.418 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:30:23.418 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-17 22:30:23.588 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1207
17-03-17 22:30:23.588 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1207
17-03-17 22:30:23.588 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:30:23.588 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:30:23.588 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 2235207384, 0x0, 391868352) start.
17-03-17 22:30:23.598 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1207
17-03-17 22:30:23.598 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1207
17-03-17 22:30:23.598 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:30:23.598 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:30:23.718 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 22:30:23.778 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP 1400
17-03-17 22:30:23.778 -07 000000561 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:30:23.778 -07 000000610 INF: FPGA: 'CAMDBLSNAP 454 454 218 218 37234 150' command took 2 ms to send, 1399 ms to get response, and 1407 ms overall
17-03-17 22:30:23.788 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 22:30:23.788 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.87890625, Z-Position -0.169648452835576. ------
17-03-17 22:30:23.788 -07 000000486 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:30:23.788 -07 000000476 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.17609 mm
17-03-17 22:30:23.788 -07 000000476 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:30:23.788 -07 000000448 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:30:23.788 -07 000000462 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-17 22:30:23.788 -07 000000462 INF: Y Motor: Moving to 65.7226 mm, started at 64.8789 mm, delta = 0.8437 mm
17-03-17 22:30:23.788 -07 000000618 INF: Z Motor: Entering MoveAbsStepped (DAC = 38467, sync = True, waitForSettling = False)
17-03-17 22:30:23.788 -07 000000618 INF: Z Motor: Moving to -0.176091 mm, started at -0.169648 mm, distance = -6.44 um
17-03-17 22:30:23.798 -07 000000486 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 22:30:23.798 -07 000000618 INF: FPGA: Xmit ZDACW 38467\n [Z Motor]
17-03-17 22:30:23.798 -07 000000448 INF: FPGA: Recv ZDACW
17-03-17 22:30:23.808 -07 000000486 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:30:23.808 -07 000000618 INF: FPGA: 'ZDACW 38467' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:30:23.818 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:30:23.818 -07 000000431 INF: FPGA: Recv YRDPOS 132872
17-03-17 22:30:23.828 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-17 22:30:23.828 -07 000000618 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:30:23.828 -07 000000462 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:30:23.828 -07 000000462 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:30:23.828 -07 000000462 INF: Y Motor: Moving 1350 steps-28
17-03-17 22:30:23.828 -07 000000429 INF: FPGA: Recv ZDACR 38467
17-03-17 22:30:23.838 -07 000000618 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:30:23.838 -07 000000618 INF: Z Motor: MoveAbsStepped took 42 ms (did NOT wait for settling yet))
17-03-17 22:30:23.838 -07 000000462 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:30:23.998 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 2235207384, 0x0, 391868352) end. Duration was 404 ms.
17-03-17 22:30:23.998 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 22:30:23.998 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:30:23.998 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 22:30:23.998 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-17 22:30:24.008 -07 000000561 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:30:24.008 -07 000000486 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 212 ms overall
17-03-17 22:30:24.108 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 397 ms.
17-03-17 22:30:24.108 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 518 ms.
17-03-17 22:30:24.108 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:30:24.118 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:30:24.118 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 527 ms.
17-03-17 22:30:24.218 -07 000000448 INF: FPGA: Recv YMVTILE
17-03-17 22:30:24.218 -07 000000462 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 389 ms overall
17-03-17 22:30:24.248 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:30:24.258 -07 000000626 INF: FPGA: Recv YRDPOS 134582
17-03-17 22:30:24.258 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 22:30:24.258 -07 000000462 INF: Y Motor: Encoder = 134582 = motor step 105142.2 = 65.7139 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:30:24.258 -07 000000462 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-17 22:30:24.258 -07 000000462 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 389 ms, distance = 0.844 mm, average velocity = 2.169 mm/sec
17-03-17 22:30:25.208 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:30:25.208 -07 000000448 INF: FPGA: Recv YRDPOS 134582
17-03-17 22:30:25.218 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:30:25.218 -07 000000462 INF: Y Motor: Encoder = 134582 = motor step 105142.2 = 65.7139 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:30:25.238 -07 000000462 INF: Y Motor: After move to 65.722610, error = -0.008743, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:30:25.248 -07 000000462 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:30:25.248 -07 000000462 INF: Y Motor: Moved to 65.7139 after 1450 ms (table move)
17-03-17 22:30:25.248 -07 000000476 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176091 mm (DAC = 38467)
17-03-17 22:30:25.248 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:25.248 -07 000000626 INF: FPGA: Recv ZSGSRD 36700
17-03-17 22:30:25.258 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:30:25.258 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:25.258 -07 000000012 INF: FPGA: Recv ZSGSRD 36700
17-03-17 22:30:25.268 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:25.268 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:25.268 -07 000000012 INF: FPGA: Recv ZSGSRD 36697
17-03-17 22:30:25.278 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:25.278 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:25.278 -07 000000012 INF: FPGA: Recv ZSGSRD 36695
17-03-17 22:30:25.288 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:25.288 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:25.288 -07 000000012 INF: FPGA: Recv ZSGSRD 36700
17-03-17 22:30:25.298 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:25.298 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:25.298 -07 000000429 INF: FPGA: Recv ZSGSRD 36695
17-03-17 22:30:25.308 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:25.308 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:25.308 -07 000000429 INF: FPGA: Recv ZSGSRD 36701
17-03-17 22:30:25.318 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:25.318 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:25.318 -07 000000429 INF: FPGA: Recv ZSGSRD 36706
17-03-17 22:30:25.328 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:25.328 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:25.328 -07 000000429 INF: FPGA: Recv ZSGSRD 36702
17-03-17 22:30:25.338 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:25.338 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:25.338 -07 000000429 INF: FPGA: Recv ZSGSRD 36704
17-03-17 22:30:25.348 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:25.348 -07 000000476 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:30:25.348 -07 000000429 INF: FPGA: Recv ZPIEZORD 32986
17-03-17 22:30:25.358 -07 000000476 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:25.358 -07 000000476 INF: Z Motor: Piezo is near 50.5 V (nominally 0 to 100 V), expect near 58.7 V, since DAC is at 5.870 V. Piezo Error = -8.2 V.
17-03-17 22:30:25.358 -07 000000476 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.1 um, Read 10 ADC samples: Avg = 36700 (-175.2 uncal um), Error = 0.9 uncal um, Median = 36700 (-175.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36695 (-175.2 uncal um), Max = 36706 (-175.2 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 22:30:25.358 -07 000000476 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36700, posNoise = 6, negNoise = 5
17-03-17 22:30:25.358 -07 000000476 INF: Z Motor: After move to -0.176091, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:30:25.358 -07 000000476 INF: Z Motor: Settle wait time = 1453 ms, measure time = 108 ms (allowed 150 ms), total time = 1561 ms
17-03-17 22:30:25.358 -07 000000476 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-17 22:30:25.408 -07 000000476 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1614 ms
17-03-17 22:30:25.408 -07 000000476 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:30:25.408 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:30:25.408 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:30:25.408 -07 000000448 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:30:25.408 -07 000000551 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:30:25.408 -07 000000486 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:30:25.408 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:30:25.408 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:30:25.408 -07 000000486 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:30:25.418 -07 000000486 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:30:25.418 -07 000000486 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:30:25.428 -07 000000486 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 22:30:25.428 -07 000000486 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 22:30:25.428 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:30:25.478 -07 000000627 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:30:25.678 -07 000000462 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:30:25.678 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:30:25.678 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:30:25.678 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 22:30:25.718 -07 000000431 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:30:25.718 -07 000000012 INF: FPGA: Recv CAMSNAP
17-03-17 22:30:25.718 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 288 ms overall
17-03-17 22:30:25.798 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 117 ms.
17-03-17 22:30:25.798 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:30:25.798 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:30:25.798 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-17 22:30:25.818 -07 000000626 INF: Autofocus start
17-03-17 22:30:25.818 -07 000000626 INF: MeasureProfile start
17-03-17 22:30:25.818 -07 000000551 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:30:25.818 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:30:25.828 -07 000000551 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 22:30:25.828 -07 000000551 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:30:25.828 -07 000000626 INF: MeasureProfile done
17-03-17 22:30:25.828 -07 000000626 INF: X=64  Z correction [um]=0.2557664
17-03-17 22:30:25.828 -07 000000626 INF: Autofocus finished
17-03-17 22:30:26.028 -07 000000561 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:30:26.028 -07 000000551 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:30:26.028 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.7138671875, Z-position -0.176091937613762. ----------
17-03-17 22:30:26.028 -07 000000610 INF: Cycle	64	Tile	8	Exposure Settings		A	454	G	218	T	218	C	454
17-03-17 22:30:26.038 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37035, sync = True, waitForSettling = True)
17-03-17 22:30:26.038 -07 000000610 INF: Z Motor: Moving to -0.169535 mm, started at -0.176092 mm, distance = 6.56 um
17-03-17 22:30:26.038 -07 000000610 INF: FPGA: Xmit ZDACW 37035\n [Z Motor]
17-03-17 22:30:26.038 -07 000000431 INF: FPGA: Recv ZDACW
17-03-17 22:30:26.048 -07 000000610 INF: FPGA: 'ZDACW 37035' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:30:26.058 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:30:26.058 -07 000000486 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 64, FrontChillerTemperature: 4.011254,
17-03-17 22:30:26.058 -07 000000618 INF: FPGA: Recv ZDACR 37035
17-03-17 22:30:26.068 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:30:26.068 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:30:26.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:26.218 -07 000000476 INF: FPGA: Recv ZSGSRD 35679
17-03-17 22:30:26.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:30:26.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:26.228 -07 000000627 INF: FPGA: Recv ZSGSRD 35682
17-03-17 22:30:26.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:26.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:26.238 -07 000000626 INF: FPGA: Recv ZSGSRD 35680
17-03-17 22:30:26.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:26.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:26.248 -07 000000448 INF: FPGA: Recv ZSGSRD 35680
17-03-17 22:30:26.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:26.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:26.258 -07 000000627 INF: FPGA: Recv ZSGSRD 35684
17-03-17 22:30:26.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:26.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:26.268 -07 000000476 INF: FPGA: Recv ZSGSRD 35683
17-03-17 22:30:26.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:26.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:26.278 -07 000000626 INF: FPGA: Recv ZSGSRD 35685
17-03-17 22:30:26.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:26.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:26.288 -07 000000626 INF: FPGA: Recv ZSGSRD 35680
17-03-17 22:30:26.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:26.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:26.298 -07 000000626 INF: FPGA: Recv ZSGSRD 35674
17-03-17 22:30:26.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:26.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:26.308 -07 000000626 INF: FPGA: Recv ZSGSRD 35681
17-03-17 22:30:26.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:26.318 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:30:26.318 -07 000000626 INF: FPGA: Recv ZPIEZORD 31641
17-03-17 22:30:26.328 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:26.328 -07 000000610 INF: Z Motor: Piezo is near 47.6 V (nominally 0 to 100 V), expect near 56.5 V, since DAC is at 5.651 V. Piezo Error = -8.9 V.
17-03-17 22:30:26.328 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.5 um, Read 10 ADC samples: Avg = 35681 (-168.7 uncal um), Error = 0.9 uncal um, Median = 35680 (-168.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35674 (-168.6 uncal um), Max = 35685 (-168.7 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 22:30:26.328 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35681, posNoise = 4, negNoise = 7
17-03-17 22:30:26.328 -07 000000610 INF: Z Motor: After move to -0.169535, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:30:26.328 -07 000000610 INF: Z Motor: MoveAbsStepped took 288 ms)
17-03-17 22:30:26.328 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:30:26.328 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:30:26.328 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:30:26.328 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:30:26.328 -07 000000551 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:30:26.328 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:30:26.328 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:30:26.328 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:30:26.328 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 22:30:26.328 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:30:26.328 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:30:26.328 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:30:26.338 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 22:30:26.338 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:30:26.338 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:30:26.338 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:30:26.348 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 22:30:26.348 -07 000000551 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 22:30:26.348 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 22:30:26.348 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 22:30:26.348 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 454 454 218 218 37212 150\n [Camera]
17-03-17 22:30:26.548 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:30:26.978 -07 000000551 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:30:26.978 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 63. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1016, R2=1046, Total=2062. Warn if over 250 bubbles per interval.
17-03-17 22:30:26.998 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 646
17-03-17 22:30:26.998 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 646
17-03-17 22:30:27.008 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:30:27.008 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 646
17-03-17 22:30:27.008 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 646
17-03-17 22:30:27.008 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:30:27.008 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:30:27.008 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 22:30:27.018 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:30:27.018 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 1458343128, 0x0, 418435064) start.
17-03-17 22:30:27.198 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37212 839
17-03-17 22:30:27.338 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP turning grn on 989
17-03-17 22:30:27.378 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 374 ms.
17-03-17 22:30:27.378 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 374 ms.
17-03-17 22:30:27.388 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:30:27.388 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:30:27.388 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 22:30:27.388 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 1458343128, 0x0, 418435064) end. Duration was 371 ms.
17-03-17 22:30:27.388 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-17 22:30:27.388 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:30:27.388 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:30:27.398 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 22:30:27.558 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1207
17-03-17 22:30:27.558 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1207
17-03-17 22:30:27.558 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:30:27.568 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1207
17-03-17 22:30:27.568 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1207
17-03-17 22:30:27.568 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:30:27.578 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:30:27.578 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 22:30:27.578 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:30:27.578 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 22:30:27.748 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP 1399
17-03-17 22:30:27.758 -07 000000627 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:30:27.758 -07 000000610 INF: FPGA: 'CAMDBLSNAP 454 454 218 218 37212 150' command took 2 ms to send, 1400 ms to get response, and 1407 ms overall
17-03-17 22:30:27.758 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 22:30:27.758 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.7138671875, Z-Position -0.169545665441308. ------
17-03-17 22:30:27.758 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:30:27.878 -07 000000618 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.17586 mm
17-03-17 22:30:27.878 -07 000000618 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:30:27.878 -07 000000627 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:30:27.888 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 120 ms to send, 0 ms to get response, and 123 ms overall
17-03-17 22:30:27.888 -07 000000448 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-17 22:30:27.888 -07 000000448 INF: Y Motor: Moving to 66.5526 mm, started at 65.7139 mm, delta = 0.8387 mm
17-03-17 22:30:27.888 -07 000000462 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:30:27.888 -07 000000551 INF: Z Motor: Entering MoveAbsStepped (DAC = 38416, sync = True, waitForSettling = False)
17-03-17 22:30:27.888 -07 000000551 INF: Z Motor: Moving to -0.175857 mm, started at -0.169546 mm, distance = -6.31 um
17-03-17 22:30:27.898 -07 000000551 INF: FPGA: Xmit ZDACW 38416\n [Z Motor]
17-03-17 22:30:27.898 -07 000000626 INF: FPGA: Recv ZDACW
17-03-17 22:30:27.908 -07 000000448 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:30:27.908 -07 000000551 INF: FPGA: 'ZDACW 38416' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-17 22:30:27.908 -07 000000431 INF: FPGA: Recv YRDPOS 134583
17-03-17 22:30:27.918 -07 000000551 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:30:27.918 -07 000000448 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:30:27.918 -07 000000448 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:30:27.918 -07 000000431 INF: FPGA: Recv ZDACR 38416
17-03-17 22:30:27.918 -07 000000448 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:30:27.918 -07 000000448 INF: Y Motor: Moving 1341 steps-18
17-03-17 22:30:27.928 -07 000000551 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:30:27.928 -07 000000448 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:30:27.928 -07 000000551 INF: Z Motor: MoveAbsStepped took 38 ms (did NOT wait for settling yet))
17-03-17 22:30:27.968 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 391 ms.
17-03-17 22:30:27.968 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 22:30:27.968 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:30:27.968 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 389 ms.
17-03-17 22:30:27.968 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 22:30:27.968 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:30:27.968 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:30:27.968 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-17 22:30:27.978 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 22:30:27.978 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-17 22:30:28.088 -07 000000627 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:30:28.088 -07 000000462 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 203 ms overall
17-03-17 22:30:28.308 -07 000000476 INF: FPGA: Recv YMVTILE
17-03-17 22:30:28.308 -07 000000448 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 385 ms overall
17-03-17 22:30:28.338 -07 000000448 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:30:28.348 -07 000000476 INF: FPGA: Recv YRDPOS 136272
17-03-17 22:30:28.348 -07 000000448 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 22:30:28.348 -07 000000448 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:30:28.348 -07 000000448 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 22:30:28.348 -07 000000448 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 385 ms, distance = 0.839 mm, average velocity = 2.179 mm/sec
17-03-17 22:30:29.298 -07 000000448 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:30:29.298 -07 000000627 INF: FPGA: Recv YRDPOS 136272
17-03-17 22:30:29.308 -07 000000448 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:30:29.308 -07 000000448 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:30:29.328 -07 000000448 INF: Y Motor: After move to 66.552605, error = -0.013542, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:30:29.328 -07 000000448 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:30:29.328 -07 000000448 INF: Y Motor: Moved to 66.5391 after 1445 ms (table move)
17-03-17 22:30:29.328 -07 000000618 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175857 mm (DAC = 38416)
17-03-17 22:30:29.328 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:29.338 -07 000000448 INF: FPGA: Recv ZSGSRD 36669
17-03-17 22:30:29.338 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-17 22:30:29.338 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:29.338 -07 000000429 INF: FPGA: Recv ZSGSRD 36671
17-03-17 22:30:29.348 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:30:29.348 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:29.348 -07 000000448 INF: FPGA: Recv ZSGSRD 36666
17-03-17 22:30:29.358 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:29.358 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:29.358 -07 000000429 INF: FPGA: Recv ZSGSRD 36665
17-03-17 22:30:29.368 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:29.368 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:29.368 -07 000000429 INF: FPGA: Recv ZSGSRD 36667
17-03-17 22:30:29.378 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:29.378 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:29.378 -07 000000429 INF: FPGA: Recv ZSGSRD 36667
17-03-17 22:30:29.388 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:29.388 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:29.388 -07 000000429 INF: FPGA: Recv ZSGSRD 36660
17-03-17 22:30:29.398 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:29.398 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:29.398 -07 000000561 INF: FPGA: Recv ZSGSRD 36663
17-03-17 22:30:29.408 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:29.408 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:29.408 -07 000000429 INF: FPGA: Recv ZSGSRD 36657
17-03-17 22:30:29.418 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:29.418 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:29.418 -07 000000561 INF: FPGA: Recv ZSGSRD 36660
17-03-17 22:30:29.428 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:29.428 -07 000000618 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:30:29.428 -07 000000561 INF: FPGA: Recv ZPIEZORD 32943
17-03-17 22:30:29.438 -07 000000618 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:29.438 -07 000000618 INF: Z Motor: Piezo is near 50.4 V (nominally 0 to 100 V), expect near 58.6 V, since DAC is at 5.862 V. Piezo Error = -8.2 V.
17-03-17 22:30:29.438 -07 000000618 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.9 um, Read 10 ADC samples: Avg = 36664 (-175.0 uncal um), Error = 0.9 uncal um, Median = 36666 (-175.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36657 (-174.9 uncal um), Max = 36671 (-175.0 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 22:30:29.438 -07 000000618 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36664, posNoise = 7, negNoise = 7
17-03-17 22:30:29.438 -07 000000618 INF: Z Motor: After move to -0.175857, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:30:29.438 -07 000000618 INF: Z Motor: Settle wait time = 1447 ms, measure time = 101 ms (allowed 150 ms), total time = 1548 ms
17-03-17 22:30:29.438 -07 000000618 INF: Z Motor: Waiting extra 49 ms after reading position to reach expected total of 150 ms
17-03-17 22:30:29.488 -07 000000618 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1603 ms
17-03-17 22:30:29.488 -07 000000618 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:30:29.488 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:30:29.488 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:30:29.488 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:30:29.488 -07 000000429 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:30:29.488 -07 000000486 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:30:29.488 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:30:29.488 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:30:29.488 -07 000000486 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:30:29.498 -07 000000486 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:30:29.498 -07 000000486 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:30:29.508 -07 000000486 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 22:30:29.508 -07 000000486 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 22:30:29.508 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:30:29.558 -07 000000486 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:30:29.758 -07 000000618 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:30:29.758 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:30:29.758 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:30:29.758 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 22:30:29.798 -07 000000627 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:30:29.798 -07 000000448 INF: FPGA: Recv CAMSNAP
17-03-17 22:30:29.798 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 284 ms overall
17-03-17 22:30:29.868 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 22:30:29.868 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:30:29.868 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:30:29.868 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 116 ms.
17-03-17 22:30:29.898 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:30:29.898 -07 000000431 INF: Autofocus start
17-03-17 22:30:29.898 -07 000000431 INF: MeasureProfile start
17-03-17 22:30:29.898 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:30:29.908 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:30:29.908 -07 000000561 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:30:29.918 -07 000000431 INF: MeasureProfile done
17-03-17 22:30:29.918 -07 000000431 INF: X=32  Z correction [um]=0.09220707
17-03-17 22:30:29.918 -07 000000431 INF: Autofocus finished
17-03-17 22:30:30.108 -07 000000462 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:30:30.108 -07 000000561 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:30:30.108 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.5390625, Z-position -0.175860665976659. ----------
17-03-17 22:30:30.108 -07 000000610 INF: Cycle	64	Tile	9	Exposure Settings		A	454	G	218	T	218	C	454
17-03-17 22:30:30.118 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36949, sync = True, waitForSettling = True)
17-03-17 22:30:30.118 -07 000000610 INF: Z Motor: Moving to -0.169142 mm, started at -0.175861 mm, distance = 6.72 um
17-03-17 22:30:30.118 -07 000000610 INF: FPGA: Xmit ZDACW 36949\n [Z Motor]
17-03-17 22:30:30.118 -07 000000486 INF: FPGA: Recv ZDACW
17-03-17 22:30:30.128 -07 000000610 INF: FPGA: 'ZDACW 36949' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:30.128 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:30:30.128 -07 000000486 INF: FPGA: Recv ZDACR 36949
17-03-17 22:30:30.138 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:30.138 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:30:30.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:30.288 -07 000000626 INF: FPGA: Recv ZSGSRD 35621
17-03-17 22:30:30.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:30:30.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:30.298 -07 000000626 INF: FPGA: Recv ZSGSRD 35619
17-03-17 22:30:30.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:30.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:30.308 -07 000000626 INF: FPGA: Recv ZSGSRD 35619
17-03-17 22:30:30.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:30.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:30.318 -07 000000626 INF: FPGA: Recv ZSGSRD 35619
17-03-17 22:30:30.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:30.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:30.328 -07 000000626 INF: FPGA: Recv ZSGSRD 35626
17-03-17 22:30:30.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:30.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:30.338 -07 000000626 INF: FPGA: Recv ZSGSRD 35618
17-03-17 22:30:30.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:30.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:30.348 -07 000000626 INF: FPGA: Recv ZSGSRD 35616
17-03-17 22:30:30.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:30.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:30.358 -07 000000431 INF: FPGA: Recv ZSGSRD 35621
17-03-17 22:30:30.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:30:30.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:30.368 -07 000000551 INF: FPGA: Recv ZSGSRD 35619
17-03-17 22:30:30.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:30.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:30.378 -07 000000551 INF: FPGA: Recv ZSGSRD 35620
17-03-17 22:30:30.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:30.388 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:30:30.388 -07 000000551 INF: FPGA: Recv ZPIEZORD 31556
17-03-17 22:30:30.398 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:30.398 -07 000000610 INF: Z Motor: Piezo is near 47.4 V (nominally 0 to 100 V), expect near 56.4 V, since DAC is at 5.638 V. Piezo Error = -9.0 V.
17-03-17 22:30:30.398 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.1 um, Read 10 ADC samples: Avg = 35620 (-168.3 uncal um), Error = 0.9 uncal um, Median = 35619 (-168.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35616 (-168.3 uncal um), Max = 35626 (-168.3 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 22:30:30.398 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35620, posNoise = 6, negNoise = 4
17-03-17 22:30:30.398 -07 000000610 INF: Z Motor: After move to -0.169142, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:30:30.398 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 22:30:30.398 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:30:30.398 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:30:30.398 -07 000000448 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:30:30.398 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:30:30.398 -07 000000431 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:30:30.398 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:30:30.398 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:30:30.398 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:30:30.398 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:30:30.398 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:30:30.398 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:30:30.398 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:30:30.408 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 22:30:30.408 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:30:30.408 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:30:30.408 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:30:30.418 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 22:30:30.418 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 22:30:30.418 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 22:30:30.418 -07 000000431 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 22:30:30.418 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 454 454 218 218 37126 150\n [Camera]
17-03-17 22:30:30.618 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:30:31.068 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 646
17-03-17 22:30:31.068 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 646
17-03-17 22:30:31.078 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:30:31.078 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 646
17-03-17 22:30:31.078 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 646
17-03-17 22:30:31.078 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:30:31.078 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:30:31.078 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 22:30:31.078 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:30:31.078 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 22:30:31.268 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37126 839
17-03-17 22:30:31.418 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning grn on 989
17-03-17 22:30:31.438 -07 000000561 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 64, FrontChillerTemperature: 4.008536,
17-03-17 22:30:31.448 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 373 ms.
17-03-17 22:30:31.448 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-17 22:30:31.448 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:30:31.448 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 373 ms.
17-03-17 22:30:31.448 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 374 ms.
17-03-17 22:30:31.448 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:30:31.458 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:30:31.458 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 22:30:31.458 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 22:30:31.458 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 22:30:31.638 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1207
17-03-17 22:30:31.638 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1207
17-03-17 22:30:31.638 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:30:31.638 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:30:31.638 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1458343128, 0x0, 391868352) start.
17-03-17 22:30:31.638 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1207
17-03-17 22:30:31.638 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1207
17-03-17 22:30:31.638 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:30:31.638 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:30:31.638 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) start.
17-03-17 22:30:31.828 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP 1400
17-03-17 22:30:31.828 -07 000000429 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:30:31.828 -07 000000610 INF: FPGA: 'CAMDBLSNAP 454 454 218 218 37126 150' command took 2 ms to send, 1402 ms to get response, and 1407 ms overall
17-03-17 22:30:31.828 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 22:30:31.828 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.5390625, Z-Position -0.16915378850066. ------
17-03-17 22:30:31.828 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:30:31.828 -07 000000627 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.17596 mm
17-03-17 22:30:31.828 -07 000000627 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:30:31.838 -07 000000486 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-17 22:30:31.838 -07 000000486 INF: Y Motor: Moving to 67.3826 mm, started at 66.5391 mm, delta = 0.8435 mm
17-03-17 22:30:31.838 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:30:31.838 -07 000000462 INF: Z Motor: Entering MoveAbsStepped (DAC = 38438, sync = True, waitForSettling = False)
17-03-17 22:30:31.838 -07 000000462 INF: Z Motor: Moving to -0.175958 mm, started at -0.169154 mm, distance = -6.80 um
17-03-17 22:30:31.838 -07 000000448 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:30:31.838 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 22:30:31.838 -07 000000429 INF: FPGA: Recv YRDPOS 136273
17-03-17 22:30:31.848 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:30:31.848 -07 000000486 INF: Y Motor: Encoder = 136273 = motor step 106463.3 = 66.5396 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:30:31.848 -07 000000618 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:30:31.848 -07 000000486 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:30:31.848 -07 000000486 INF: Y Motor: Moving 1349 steps-28
17-03-17 22:30:31.858 -07 000000462 INF: FPGA: Xmit ZDACW 38438\n [Z Motor]
17-03-17 22:30:31.858 -07 000000626 INF: FPGA: Recv ZDACW
17-03-17 22:30:31.868 -07 000000486 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:30:31.868 -07 000000462 INF: FPGA: 'ZDACW 38438' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-17 22:30:31.878 -07 000000462 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:30:31.878 -07 000000431 INF: FPGA: Recv ZDACR 38438
17-03-17 22:30:31.888 -07 000000462 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:30:31.888 -07 000000462 INF: Z Motor: MoveAbsStepped took 48 ms (did NOT wait for settling yet))
17-03-17 22:30:31.978 -07 000000476 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:30:31.978 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 63. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1016, R2=1046, Total=2062. Warn if over 250 bubbles per interval.
17-03-17 22:30:32.028 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) end. Duration was 389 ms.
17-03-17 22:30:32.028 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 22:30:32.028 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:30:32.028 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1458343128, 0x0, 391868352) end. Duration was 395 ms.
17-03-17 22:30:32.028 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:30:32.038 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 22:30:32.038 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:30:32.038 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 22:30:32.038 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 22:30:32.038 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 22:30:32.048 -07 000000462 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:30:32.048 -07 000000618 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 210 ms overall
17-03-17 22:30:32.238 -07 000000448 INF: FPGA: Recv YMVTILE
17-03-17 22:30:32.238 -07 000000486 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 393 ms overall
17-03-17 22:30:32.278 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:30:32.288 -07 000000618 INF: FPGA: Recv YRDPOS 137978
17-03-17 22:30:32.288 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 22:30:32.288 -07 000000486 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:30:32.288 -07 000000486 INF: Y Motor: Position error before settling (table move) = -22 encoder counts (-0.011 mm)
17-03-17 22:30:32.288 -07 000000486 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.844 mm, average velocity = 2.141 mm/sec
17-03-17 22:30:33.238 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:30:33.238 -07 000000448 INF: FPGA: Recv YRDPOS 137978
17-03-17 22:30:33.248 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:33.248 -07 000000486 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:30:33.268 -07 000000486 INF: Y Motor: After move to 67.382607, error = -0.010536, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:30:33.268 -07 000000486 INF: Y Motor: Position error after settling (table move) = -22 encoder counts (-0.011 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:30:33.268 -07 000000486 INF: Y Motor: Moved to 67.3721 after 1434 ms (table move)
17-03-17 22:30:33.268 -07 000000627 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175958 mm (DAC = 38438)
17-03-17 22:30:33.268 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:33.278 -07 000000486 INF: FPGA: Recv ZSGSRD 36680
17-03-17 22:30:33.278 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 22:30:33.278 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:33.278 -07 000000429 INF: FPGA: Recv ZSGSRD 36684
17-03-17 22:30:33.288 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:30:33.288 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:33.288 -07 000000429 INF: FPGA: Recv ZSGSRD 36677
17-03-17 22:30:33.298 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:33.298 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:33.298 -07 000000486 INF: FPGA: Recv ZSGSRD 36679
17-03-17 22:30:33.308 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:33.308 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:33.308 -07 000000561 INF: FPGA: Recv ZSGSRD 36682
17-03-17 22:30:33.318 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:33.318 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:33.318 -07 000000561 INF: FPGA: Recv ZSGSRD 36684
17-03-17 22:30:33.328 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:33.328 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:33.328 -07 000000448 INF: FPGA: Recv ZSGSRD 36680
17-03-17 22:30:33.338 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:33.338 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:33.338 -07 000000429 INF: FPGA: Recv ZSGSRD 36676
17-03-17 22:30:33.348 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:33.348 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:33.348 -07 000000626 INF: FPGA: Recv ZSGSRD 36679
17-03-17 22:30:33.358 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:33.358 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:33.358 -07 000000561 INF: FPGA: Recv ZSGSRD 36678
17-03-17 22:30:33.368 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:33.368 -07 000000627 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:30:33.368 -07 000000486 INF: FPGA: Recv ZPIEZORD 32972
17-03-17 22:30:33.378 -07 000000627 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:33.378 -07 000000627 INF: Z Motor: Piezo is near 50.4 V (nominally 0 to 100 V), expect near 58.7 V, since DAC is at 5.865 V. Piezo Error = -8.2 V.
17-03-17 22:30:33.378 -07 000000627 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.0 um, Read 10 ADC samples: Avg = 36680 (-175.1 uncal um), Error = 0.9 uncal um, Median = 36680 (-175.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 36676 (-175.0 uncal um), Max = 36684 (-175.1 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 22:30:33.378 -07 000000627 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36680, posNoise = 4, negNoise = 4
17-03-17 22:30:33.378 -07 000000627 INF: Z Motor: After move to -0.175958, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:30:33.378 -07 000000627 INF: Z Motor: Settle wait time = 1437 ms, measure time = 102 ms (allowed 150 ms), total time = 1539 ms
17-03-17 22:30:33.378 -07 000000627 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 22:30:33.428 -07 000000627 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1591 ms
17-03-17 22:30:33.428 -07 000000627 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:30:33.428 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:30:33.428 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:30:33.428 -07 000000429 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:30:33.428 -07 000000448 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:30:33.428 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:30:33.428 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:30:33.428 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:30:33.428 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:30:33.438 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:30:33.438 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:30:33.448 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 22:30:33.448 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 22:30:33.448 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:30:33.498 -07 000000431 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:30:33.698 -07 000000431 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:30:33.698 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:30:33.698 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:30:33.698 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 594000200, 0x0, 559484976) start.
17-03-17 22:30:33.738 -07 000000448 INF: FPGA: Recv @CAMSNAP 281
17-03-17 22:30:33.738 -07 000000431 INF: FPGA: Recv CAMSNAP
17-03-17 22:30:33.738 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 283 ms to get response, and 286 ms overall
17-03-17 22:30:33.818 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 594000200, 0x0, 559484976) end. Duration was 122 ms.
17-03-17 22:30:33.818 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:30:33.818 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 22:30:33.818 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 125 ms.
17-03-17 22:30:33.838 -07 000000476 INF: Autofocus start
17-03-17 22:30:33.838 -07 000000476 INF: MeasureProfile start
17-03-17 22:30:33.838 -07 000000486 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:30:33.838 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:30:33.848 -07 000000486 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:30:33.848 -07 000000486 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:30:33.848 -07 000000476 INF: MeasureProfile done
17-03-17 22:30:33.848 -07 000000476 INF: X=0  Z correction [um]=-0.0713522
17-03-17 22:30:33.848 -07 000000476 INF: Autofocus finished
17-03-17 22:30:34.048 -07 000000448 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:30:34.048 -07 000000486 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:30:34.048 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.3720703125, Z-position -0.175963453370927. ----------
17-03-17 22:30:34.048 -07 000000610 INF: Cycle	64	Tile	10	Exposure Settings		A	454	G	218	T	218	C	454
17-03-17 22:30:34.058 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36935, sync = True, waitForSettling = True)
17-03-17 22:30:34.058 -07 000000610 INF: Z Motor: Moving to -0.169078 mm, started at -0.175963 mm, distance = 6.89 um
17-03-17 22:30:34.058 -07 000000610 INF: FPGA: Xmit ZDACW 36935\n [Z Motor]
17-03-17 22:30:34.058 -07 000000462 INF: FPGA: Recv ZDACW
17-03-17 22:30:34.068 -07 000000610 INF: FPGA: 'ZDACW 36935' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:34.068 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:30:34.068 -07 000000448 INF: FPGA: Recv ZDACR 36935
17-03-17 22:30:34.078 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:34.078 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:30:34.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:34.228 -07 000000424 INF: FPGA: Recv ZSGSRD 35608
17-03-17 22:30:34.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:30:34.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:34.238 -07 000000429 INF: FPGA: Recv ZSGSRD 35613
17-03-17 22:30:34.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:34.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:34.248 -07 000000424 INF: FPGA: Recv ZSGSRD 35612
17-03-17 22:30:34.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:34.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:34.258 -07 000000424 INF: FPGA: Recv ZSGSRD 35608
17-03-17 22:30:34.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:34.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:34.268 -07 000000424 INF: FPGA: Recv ZSGSRD 35609
17-03-17 22:30:34.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:34.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:34.278 -07 000000424 INF: FPGA: Recv ZSGSRD 35605
17-03-17 22:30:34.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:34.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:34.288 -07 000000486 INF: FPGA: Recv ZSGSRD 35611
17-03-17 22:30:34.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:34.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:34.298 -07 000000424 INF: FPGA: Recv ZSGSRD 35607
17-03-17 22:30:34.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:34.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:34.308 -07 000000486 INF: FPGA: Recv ZSGSRD 35611
17-03-17 22:30:34.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:34.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:34.318 -07 000000476 INF: FPGA: Recv ZSGSRD 35607
17-03-17 22:30:34.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:34.328 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:30:34.328 -07 000000476 INF: FPGA: Recv ZPIEZORD 31542
17-03-17 22:30:34.338 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:34.338 -07 000000610 INF: Z Motor: Piezo is near 47.4 V (nominally 0 to 100 V), expect near 56.4 V, since DAC is at 5.636 V. Piezo Error = -9.0 V.
17-03-17 22:30:34.338 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.1 um, Read 10 ADC samples: Avg = 35609 (-168.2 uncal um), Error = 0.9 uncal um, Median = 35608 (-168.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35605 (-168.2 uncal um), Max = 35613 (-168.2 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 22:30:34.338 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35609, posNoise = 4, negNoise = 4
17-03-17 22:30:34.338 -07 000000610 INF: Z Motor: After move to -0.169078, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:30:34.338 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 22:30:34.338 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:30:34.338 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:30:34.338 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:30:34.338 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:30:34.338 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:30:34.338 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:30:34.338 -07 000000448 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:30:34.338 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:30:34.338 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 22:30:34.338 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:30:34.338 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:30:34.338 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:30:34.338 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:30:34.348 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 5 ms.
17-03-17 22:30:34.348 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:30:34.348 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:30:34.358 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 22:30:34.358 -07 000000448 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 23 ms.
17-03-17 22:30:34.358 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 22:30:34.358 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 23 ms.
17-03-17 22:30:34.368 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 454 454 218 218 37112 150\n [Camera]
17-03-17 22:30:34.558 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:30:35.018 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 646
17-03-17 22:30:35.018 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 646
17-03-17 22:30:35.018 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:30:35.018 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:30:35.018 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-17 22:30:35.018 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 646
17-03-17 22:30:35.018 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 646
17-03-17 22:30:35.018 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:30:35.018 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:30:35.018 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-17 22:30:35.208 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37112 839
17-03-17 22:30:35.358 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP turning grn on 989
17-03-17 22:30:35.398 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 22:30:35.398 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 22:30:35.398 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:30:35.398 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 376 ms.
17-03-17 22:30:35.398 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 22:30:35.398 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:30:35.398 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 22:30:35.398 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 22:30:35.408 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:30:35.408 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 22:30:35.578 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1207
17-03-17 22:30:35.578 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1207
17-03-17 22:30:35.578 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:30:35.578 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:30:35.578 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) start.
17-03-17 22:30:35.578 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1207
17-03-17 22:30:35.578 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1207
17-03-17 22:30:35.578 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:30:35.578 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:30:35.578 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 22:30:35.768 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP 1399
17-03-17 22:30:35.768 -07 000000448 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:30:35.768 -07 000000610 INF: FPGA: 'CAMDBLSNAP 454 454 218 218 37112 150' command took 2 ms to send, 1397 ms to get response, and 1406 ms overall
17-03-17 22:30:35.768 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 22:30:35.768 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.3720703125, Z-Position -0.169083122167101. ------
17-03-17 22:30:35.778 -07 000000462 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.17537 mm
17-03-17 22:30:35.778 -07 000000462 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:30:35.778 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:30:35.778 -07 000000486 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-17 22:30:35.778 -07 000000486 INF: Y Motor: Moving to 68.2126 mm, started at 67.3721 mm, delta = 0.8405 mm
17-03-17 22:30:35.778 -07 000000627 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:30:35.778 -07 000000448 INF: Z Motor: Entering MoveAbsStepped (DAC = 38309, sync = True, waitForSettling = False)
17-03-17 22:30:35.778 -07 000000448 INF: Z Motor: Moving to -0.175367 mm, started at -0.169083 mm, distance = -6.28 um
17-03-17 22:30:35.788 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:30:35.788 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:30:35.788 -07 000000626 INF: FPGA: Recv YRDPOS 137979
17-03-17 22:30:35.798 -07 000000448 INF: FPGA: Xmit ZDACW 38309\n [Z Motor]
17-03-17 22:30:35.798 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 22:30:35.798 -07 000000486 INF: Y Motor: Encoder = 137979 = motor step 107796.1 = 67.3726 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:30:35.798 -07 000000627 INF: FPGA: Recv ZDACW
17-03-17 22:30:35.798 -07 000000486 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:30:35.798 -07 000000486 INF: Y Motor: Moving 1344 steps-22
17-03-17 22:30:35.808 -07 000000424 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:30:35.808 -07 000000448 INF: FPGA: 'ZDACW 38309' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-17 22:30:35.818 -07 000000486 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:30:35.828 -07 000000448 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:30:35.828 -07 000000012 INF: FPGA: Recv ZDACR 38309
17-03-17 22:30:35.838 -07 000000448 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:30:35.838 -07 000000448 INF: Z Motor: MoveAbsStepped took 52 ms (did NOT wait for settling yet))
17-03-17 22:30:35.978 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) end. Duration was 400 ms.
17-03-17 22:30:35.978 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 22:30:35.978 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:30:35.978 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 399 ms.
17-03-17 22:30:35.978 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 22:30:35.978 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:30:35.988 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:30:35.988 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 22:30:35.988 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-17 22:30:35.988 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-17 22:30:36.008 -07 000000626 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:30:36.008 -07 000000424 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-17 22:30:36.188 -07 000000627 INF: FPGA: Recv YMVTILE
17-03-17 22:30:36.198 -07 000000486 INF: FPGA: 'YMVTILE 1327' command took 2 ms to send, 369 ms to get response, and 394 ms overall
17-03-17 22:30:36.228 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:30:36.238 -07 000000626 INF: FPGA: Recv YRDPOS 139684
17-03-17 22:30:36.248 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:30:36.248 -07 000000486 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:30:36.248 -07 000000486 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-17 22:30:36.248 -07 000000486 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.841 mm, average velocity = 2.133 mm/sec
17-03-17 22:30:36.818 -07 000000429 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 64, FrontChillerTemperature: 4.007176,
17-03-17 22:30:36.978 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:30:36.978 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 63. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1016, R2=1046, Total=2062. Warn if over 250 bubbles per interval.
17-03-17 22:30:37.198 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:30:37.198 -07 000000424 INF: FPGA: Recv YRDPOS 139684
17-03-17 22:30:37.208 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:30:37.208 -07 000000486 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:30:37.228 -07 000000486 INF: Y Motor: After move to 68.212608, error = -0.007530, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:30:37.228 -07 000000486 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:30:37.228 -07 000000486 INF: Y Motor: Moved to 68.2051 after 1447 ms (table move)
17-03-17 22:30:37.228 -07 000000462 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175367 mm (DAC = 38309)
17-03-17 22:30:37.228 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:37.238 -07 000000626 INF: FPGA: Recv ZSGSRD 36595
17-03-17 22:30:37.238 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 4 ms to get response, and 6 ms overall
17-03-17 22:30:37.238 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:37.238 -07 000000626 INF: FPGA: Recv ZSGSRD 36584
17-03-17 22:30:37.248 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 22:30:37.248 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:37.248 -07 000000458 INF: FPGA: Recv ZSGSRD 36582
17-03-17 22:30:37.258 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:37.258 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:37.258 -07 000000424 INF: FPGA: Recv ZSGSRD 36585
17-03-17 22:30:37.268 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:37.268 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:37.268 -07 000000424 INF: FPGA: Recv ZSGSRD 36586
17-03-17 22:30:37.278 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:37.278 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:37.278 -07 000000424 INF: FPGA: Recv ZSGSRD 36589
17-03-17 22:30:37.288 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:37.288 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:37.288 -07 000000561 INF: FPGA: Recv ZSGSRD 36591
17-03-17 22:30:37.298 -07 000000462 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:37.298 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:37.298 -07 000000561 INF: FPGA: Recv ZSGSRD 36592
17-03-17 22:30:37.308 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:37.308 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:37.308 -07 000000561 INF: FPGA: Recv ZSGSRD 36595
17-03-17 22:30:37.318 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:37.318 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:37.318 -07 000000486 INF: FPGA: Recv ZSGSRD 36594
17-03-17 22:30:37.328 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:37.328 -07 000000462 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:30:37.328 -07 000000486 INF: FPGA: Recv ZPIEZORD 32890
17-03-17 22:30:37.338 -07 000000462 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:37.338 -07 000000462 INF: Z Motor: Piezo is near 50.3 V (nominally 0 to 100 V), expect near 58.5 V, since DAC is at 5.846 V. Piezo Error = -8.2 V.
17-03-17 22:30:37.338 -07 000000462 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.4 um, Read 10 ADC samples: Avg = 36589 (-174.5 uncal um), Error = 0.9 uncal um, Median = 36590 (-174.5 uncal um), StdDev = 5 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36582 (-174.4 uncal um), Max = 36595 (-174.5 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 22:30:37.338 -07 000000462 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36589, posNoise = 6, negNoise = 7
17-03-17 22:30:37.338 -07 000000462 INF: Z Motor: After move to -0.175367, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:30:37.338 -07 000000462 INF: Z Motor: Settle wait time = 1450 ms, measure time = 103 ms (allowed 150 ms), total time = 1553 ms
17-03-17 22:30:37.338 -07 000000462 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 22:30:37.388 -07 000000462 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1606 ms
17-03-17 22:30:37.388 -07 000000462 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:30:37.388 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:30:37.388 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:30:37.388 -07 000000448 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:30:37.388 -07 000000458 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:30:37.388 -07 000000476 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:30:37.388 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:30:37.388 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:30:37.388 -07 000000476 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:30:37.398 -07 000000476 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:30:37.398 -07 000000476 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:30:37.408 -07 000000476 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 22:30:37.408 -07 000000476 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 22:30:37.408 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:30:37.448 -07 000000486 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:30:37.648 -07 000000424 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:30:37.648 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:30:37.648 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:30:37.658 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 22:30:37.688 -07 000000627 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:30:37.688 -07 000000476 INF: FPGA: Recv CAMSNAP
17-03-17 22:30:37.688 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 285 ms overall
17-03-17 22:30:37.778 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 119 ms.
17-03-17 22:30:37.778 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:30:37.778 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:30:37.778 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 122 ms.
17-03-17 22:30:37.788 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:30:37.788 -07 000000458 INF: Autofocus start
17-03-17 22:30:37.788 -07 000000458 INF: MeasureProfile start
17-03-17 22:30:37.788 -07 000000448 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:30:37.798 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:30:37.798 -07 000000626 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:30:37.798 -07 000000458 INF: MeasureProfile done
17-03-17 22:30:37.798 -07 000000458 INF: X=32  Z correction [um]=0.09220707
17-03-17 22:30:37.798 -07 000000458 INF: Autofocus finished
17-03-17 22:30:37.998 -07 000000476 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:30:37.998 -07 000000626 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:30:37.998 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.205078125, Z-position -0.175378850066027. ----------
17-03-17 22:30:37.998 -07 000000610 INF: Cycle	64	Tile	11	Exposure Settings		A	454	G	218	T	218	C	454
17-03-17 22:30:38.008 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36842, sync = True, waitForSettling = True)
17-03-17 22:30:38.008 -07 000000610 INF: Z Motor: Moving to -0.168652 mm, started at -0.175379 mm, distance = 6.73 um
17-03-17 22:30:38.008 -07 000000610 INF: FPGA: Xmit ZDACW 36842\n [Z Motor]
17-03-17 22:30:38.008 -07 000000429 INF: FPGA: Recv ZDACW
17-03-17 22:30:38.018 -07 000000610 INF: FPGA: 'ZDACW 36842' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:38.018 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:30:38.018 -07 000000561 INF: FPGA: Recv ZDACR 36842
17-03-17 22:30:38.028 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:38.028 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:30:38.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:38.178 -07 000000626 INF: FPGA: Recv ZSGSRD 35544
17-03-17 22:30:38.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:38.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:38.188 -07 000000431 INF: FPGA: Recv ZSGSRD 35542
17-03-17 22:30:38.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:38.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:38.198 -07 000000626 INF: FPGA: Recv ZSGSRD 35546
17-03-17 22:30:38.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:38.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:38.208 -07 000000431 INF: FPGA: Recv ZSGSRD 35546
17-03-17 22:30:38.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:38.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:38.218 -07 000000626 INF: FPGA: Recv ZSGSRD 35546
17-03-17 22:30:38.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:38.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:38.228 -07 000000431 INF: FPGA: Recv ZSGSRD 35545
17-03-17 22:30:38.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:38.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:38.238 -07 000000626 INF: FPGA: Recv ZSGSRD 35544
17-03-17 22:30:38.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:38.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:38.248 -07 000000561 INF: FPGA: Recv ZSGSRD 35543
17-03-17 22:30:38.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:38.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:38.258 -07 000000431 INF: FPGA: Recv ZSGSRD 35548
17-03-17 22:30:38.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:38.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:38.268 -07 000000561 INF: FPGA: Recv ZSGSRD 35543
17-03-17 22:30:38.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:38.278 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:30:38.278 -07 000000448 INF: FPGA: Recv ZPIEZORD 31499
17-03-17 22:30:38.288 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:38.288 -07 000000610 INF: Z Motor: Piezo is near 47.3 V (nominally 0 to 100 V), expect near 56.2 V, since DAC is at 5.622 V. Piezo Error = -8.9 V.
17-03-17 22:30:38.288 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.7 um, Read 10 ADC samples: Avg = 35545 (-167.8 uncal um), Error = 0.9 uncal um, Median = 35544 (-167.8 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 35542 (-167.8 uncal um), Max = 35548 (-167.8 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 22:30:38.288 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35545, posNoise = 3, negNoise = 3
17-03-17 22:30:38.288 -07 000000610 INF: Z Motor: After move to -0.168652, error = -0.000020, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:30:38.288 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 22:30:38.288 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:30:38.288 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:30:38.288 -07 000000476 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:30:38.288 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:30:38.288 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:30:38.288 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:30:38.288 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:30:38.288 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:30:38.288 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:30:38.288 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:30:38.288 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:30:38.288 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:30:38.298 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:30:38.298 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:30:38.298 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 22:30:38.298 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:30:38.308 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 22:30:38.308 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 22:30:38.308 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 22:30:38.308 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 22:30:38.308 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 454 454 218 218 37018 150\n [Camera]
17-03-17 22:30:38.508 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning red on 195
17-03-17 22:30:38.958 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 646
17-03-17 22:30:38.958 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 646
17-03-17 22:30:38.958 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:30:38.958 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 646
17-03-17 22:30:38.968 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 646
17-03-17 22:30:38.968 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:30:38.968 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:30:38.968 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 22:30:38.968 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:30:38.968 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 1458343128, 0x0, 418435064) start.
17-03-17 22:30:39.148 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37018 839
17-03-17 22:30:39.298 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP turning grn on 989
17-03-17 22:30:39.338 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 373 ms.
17-03-17 22:30:39.338 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 374 ms.
17-03-17 22:30:39.338 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:30:39.348 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:30:39.348 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 22:30:39.348 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 1458343128, 0x0, 418435064) end. Duration was 372 ms.
17-03-17 22:30:39.348 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-17 22:30:39.348 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:30:39.348 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:30:39.358 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 22:30:39.518 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1207
17-03-17 22:30:39.518 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1207
17-03-17 22:30:39.518 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:30:39.528 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1207
17-03-17 22:30:39.528 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1207
17-03-17 22:30:39.528 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:30:39.528 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:30:39.528 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 22:30:39.528 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:30:39.528 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-17 22:30:39.708 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP 1400
17-03-17 22:30:39.708 -07 000000458 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:30:39.708 -07 000000610 INF: FPGA: 'CAMDBLSNAP 454 454 218 218 37018 150' command took 2 ms to send, 1399 ms to get response, and 1406 ms overall
17-03-17 22:30:39.718 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 22:30:39.718 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.205078125, Z-Position -0.168671972590028. ------
17-03-17 22:30:39.718 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:30:39.718 -07 000000486 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.17535 mm
17-03-17 22:30:39.718 -07 000000486 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:30:39.718 -07 000000431 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-17 22:30:39.718 -07 000000431 INF: Y Motor: Moving to 69.0426 mm, started at 68.2051 mm, delta = 0.8375 mm
17-03-17 22:30:39.718 -07 000000458 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:30:39.718 -07 000000448 INF: Z Motor: Entering MoveAbsStepped (DAC = 38306, sync = True, waitForSettling = False)
17-03-17 22:30:39.718 -07 000000448 INF: Z Motor: Moving to -0.175354 mm, started at -0.168672 mm, distance = -6.68 um
17-03-17 22:30:39.728 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 22:30:39.728 -07 000000448 INF: FPGA: Xmit ZDACW 38306\n [Z Motor]
17-03-17 22:30:39.728 -07 000000476 INF: FPGA: Recv ZDACW
17-03-17 22:30:39.738 -07 000000448 INF: FPGA: 'ZDACW 38306' command took 2 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 22:30:39.738 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:30:39.738 -07 000000627 INF: FPGA: Recv YRDPOS 139685
17-03-17 22:30:39.748 -07 000000626 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:30:39.748 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-17 22:30:39.748 -07 000000431 INF: Y Motor: Encoder = 139685 = motor step 109128.9 = 68.2056 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:30:39.888 -07 000000431 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:30:39.888 -07 000000431 INF: Y Motor: Moving 1339 steps-15
17-03-17 22:30:39.888 -07 000000448 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:30:39.888 -07 000000424 INF: FPGA: Recv ZDACR 38306
17-03-17 22:30:39.898 -07 000000431 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:30:39.898 -07 000000448 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 159 ms overall
17-03-17 22:30:39.898 -07 000000448 INF: Z Motor: MoveAbsStepped took 171 ms (did NOT wait for settling yet))
17-03-17 22:30:39.928 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 390 ms.
17-03-17 22:30:39.928 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 22:30:39.928 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:30:39.928 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 394 ms.
17-03-17 22:30:39.928 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 22:30:39.928 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:30:39.928 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:30:39.928 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 22:30:39.928 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:30:39.938 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-17 22:30:39.948 -07 000000424 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:30:39.948 -07 000000626 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 60 ms to get response, and 222 ms overall
17-03-17 22:30:40.268 -07 000000429 INF: FPGA: Recv YMVTILE
17-03-17 22:30:40.268 -07 000000431 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 385 ms overall
17-03-17 22:30:40.308 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:30:40.318 -07 000000424 INF: FPGA: Recv YRDPOS 141367
17-03-17 22:30:40.318 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 22:30:40.318 -07 000000431 INF: Y Motor: Encoder = 141367 = motor step 110443.0 = 69.0269 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:30:40.318 -07 000000431 INF: Y Motor: Position error before settling (table move) = -32 encoder counts (-0.016 mm)
17-03-17 22:30:40.318 -07 000000431 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 385 ms, distance = 0.838 mm, average velocity = 2.175 mm/sec
17-03-17 22:30:41.268 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:30:41.268 -07 000000458 INF: FPGA: Recv YRDPOS 141368
17-03-17 22:30:41.278 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:30:41.278 -07 000000431 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:30:41.298 -07 000000431 INF: Y Motor: After move to 69.042610, error = -0.015266, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:30:41.298 -07 000000431 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 22:30:41.298 -07 000000431 INF: Y Motor: Moved to 69.0273 after 1577 ms (table move)
17-03-17 22:30:41.298 -07 000000486 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175354 mm (DAC = 38306)
17-03-17 22:30:41.298 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:41.308 -07 000000626 INF: FPGA: Recv ZSGSRD 36585
17-03-17 22:30:41.308 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 4 ms to get response, and 6 ms overall
17-03-17 22:30:41.308 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:41.308 -07 000000431 INF: FPGA: Recv ZSGSRD 36585
17-03-17 22:30:41.318 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 22:30:41.318 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:41.318 -07 000000429 INF: FPGA: Recv ZSGSRD 36588
17-03-17 22:30:41.328 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:41.328 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:41.328 -07 000000458 INF: FPGA: Recv ZSGSRD 36587
17-03-17 22:30:41.338 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:41.338 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:41.338 -07 000000431 INF: FPGA: Recv ZSGSRD 36583
17-03-17 22:30:41.348 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:41.348 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:41.348 -07 000000429 INF: FPGA: Recv ZSGSRD 36590
17-03-17 22:30:41.358 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:41.358 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:41.358 -07 000000424 INF: FPGA: Recv ZSGSRD 36591
17-03-17 22:30:41.368 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:41.368 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:41.368 -07 000000424 INF: FPGA: Recv ZSGSRD 36580
17-03-17 22:30:41.378 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:41.378 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:41.378 -07 000000448 INF: FPGA: Recv ZSGSRD 36583
17-03-17 22:30:41.388 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:41.388 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:41.388 -07 000000429 INF: FPGA: Recv ZSGSRD 36583
17-03-17 22:30:41.398 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:41.398 -07 000000486 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:30:41.398 -07 000000431 INF: FPGA: Recv ZPIEZORD 32865
17-03-17 22:30:41.408 -07 000000486 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:41.408 -07 000000486 INF: Z Motor: Piezo is near 50.2 V (nominally 0 to 100 V), expect near 58.5 V, since DAC is at 5.845 V. Piezo Error = -8.2 V.
17-03-17 22:30:41.408 -07 000000486 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.4 um, Read 10 ADC samples: Avg = 36586 (-174.5 uncal um), Error = 0.9 uncal um, Median = 36585 (-174.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36580 (-174.4 uncal um), Max = 36591 (-174.5 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 22:30:41.408 -07 000000486 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36586, posNoise = 5, negNoise = 6
17-03-17 22:30:41.408 -07 000000486 INF: Z Motor: After move to -0.175354, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:30:41.408 -07 000000486 INF: Z Motor: Settle wait time = 1580 ms, measure time = 102 ms (allowed 150 ms), total time = 1682 ms
17-03-17 22:30:41.408 -07 000000486 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 22:30:41.458 -07 000000486 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1735 ms
17-03-17 22:30:41.458 -07 000000486 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:30:41.458 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:30:41.458 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:30:41.458 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:30:41.458 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:30:41.458 -07 000000448 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:30:41.458 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:30:41.458 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:30:41.458 -07 000000448 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:30:41.468 -07 000000448 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 22:30:41.468 -07 000000448 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:30:41.478 -07 000000448 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 14 ms.
17-03-17 22:30:41.478 -07 000000448 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 19 ms.
17-03-17 22:30:41.478 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:30:41.528 -07 000000458 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:30:41.728 -07 000000458 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:30:41.728 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:30:41.728 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:30:41.728 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 22:30:41.768 -07 000000424 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:30:41.768 -07 000000431 INF: FPGA: Recv CAMSNAP
17-03-17 22:30:41.768 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 283 ms to get response, and 284 ms overall
17-03-17 22:30:41.858 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 22:30:41.858 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:30:41.858 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:30:41.858 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 22:30:41.868 -07 000000448 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:30:41.868 -07 000000486 INF: Autofocus start
17-03-17 22:30:41.868 -07 000000486 INF: MeasureProfile start
17-03-17 22:30:41.868 -07 000000429 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:30:41.878 -07 000000448 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:30:41.878 -07 000000448 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:30:41.878 -07 000000486 INF: MeasureProfile done
17-03-17 22:30:41.878 -07 000000486 INF: X=0  Z correction [um]=-0.0713522
17-03-17 22:30:41.878 -07 000000486 INF: Autofocus finished
17-03-17 22:30:41.978 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:30:41.978 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 63. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1016, R2=1046, Total=2062. Warn if over 250 bubbles per interval.
17-03-17 22:30:42.078 -07 000000561 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:30:42.078 -07 000000448 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:30:42.078 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02734375, Z-position -0.175359577429601. ----------
17-03-17 22:30:42.078 -07 000000610 INF: Cycle	64	Tile	12	Exposure Settings		A	454	G	218	T	218	C	454
17-03-17 22:30:42.088 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36803, sync = True, waitForSettling = True)
17-03-17 22:30:42.088 -07 000000610 INF: Z Motor: Moving to -0.168473 mm, started at -0.175360 mm, distance = 6.89 um
17-03-17 22:30:42.088 -07 000000610 INF: FPGA: Xmit ZDACW 36803\n [Z Motor]
17-03-17 22:30:42.088 -07 000000627 INF: FPGA: Recv ZDACW
17-03-17 22:30:42.098 -07 000000610 INF: FPGA: 'ZDACW 36803' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:42.098 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:30:42.098 -07 000000626 INF: FPGA: Recv ZDACR 36803
17-03-17 22:30:42.108 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:42.108 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:30:42.178 -07 000000448 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 64, FrontChillerTemperature: 4.031682,
17-03-17 22:30:42.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:42.258 -07 000000486 INF: FPGA: Recv ZSGSRD 35516
17-03-17 22:30:42.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:30:42.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:42.268 -07 000000486 INF: FPGA: Recv ZSGSRD 35512
17-03-17 22:30:42.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:42.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:42.278 -07 000000424 INF: FPGA: Recv ZSGSRD 35519
17-03-17 22:30:42.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:42.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:42.288 -07 000000486 INF: FPGA: Recv ZSGSRD 35515
17-03-17 22:30:42.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:42.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:42.298 -07 000000486 INF: FPGA: Recv ZSGSRD 35515
17-03-17 22:30:42.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:42.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:42.308 -07 000000486 INF: FPGA: Recv ZSGSRD 35505
17-03-17 22:30:42.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:42.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:42.318 -07 000000486 INF: FPGA: Recv ZSGSRD 35516
17-03-17 22:30:42.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:42.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:42.328 -07 000000486 INF: FPGA: Recv ZSGSRD 35519
17-03-17 22:30:42.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:42.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:42.338 -07 000000424 INF: FPGA: Recv ZSGSRD 35512
17-03-17 22:30:42.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:42.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:42.348 -07 000000424 INF: FPGA: Recv ZSGSRD 35515
17-03-17 22:30:42.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:42.358 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:30:42.358 -07 000000424 INF: FPGA: Recv ZPIEZORD 31449
17-03-17 22:30:42.368 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:42.368 -07 000000610 INF: Z Motor: Piezo is near 47.2 V (nominally 0 to 100 V), expect near 56.2 V, since DAC is at 5.616 V. Piezo Error = -9.0 V.
17-03-17 22:30:42.368 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.5 um, Read 10 ADC samples: Avg = 35514 (-167.6 uncal um), Error = 0.9 uncal um, Median = 35515 (-167.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 35505 (-167.5 uncal um), Max = 35519 (-167.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 22:30:42.368 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35514, posNoise = 5, negNoise = 9
17-03-17 22:30:42.368 -07 000000610 INF: Z Motor: After move to -0.168473, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:30:42.368 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 22:30:42.368 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:30:42.368 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:30:42.368 -07 000000431 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:30:42.368 -07 000000429 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:30:42.368 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:30:42.368 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:30:42.368 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-17 22:30:42.368 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:30:42.368 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:30:42.368 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:30:42.368 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:30:42.368 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:30:42.368 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 22:30:42.368 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:30:42.378 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 22:30:42.378 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:30:42.378 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 22:30:42.378 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 12 ms.
17-03-17 22:30:42.378 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 22:30:42.378 -07 000000429 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 22:30:42.388 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 454 454 218 218 36980 150\n [Camera]
17-03-17 22:30:42.588 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:30:43.038 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 647
17-03-17 22:30:43.038 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 647
17-03-17 22:30:43.038 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:30:43.048 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 647
17-03-17 22:30:43.048 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 647
17-03-17 22:30:43.048 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:30:43.048 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:30:43.048 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 1458343128, 0x0, 418435064) start.
17-03-17 22:30:43.048 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:30:43.048 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 22:30:43.228 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36980 839
17-03-17 22:30:43.378 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning grn on 989
17-03-17 22:30:43.418 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 1458343128, 0x0, 418435064) end. Duration was 373 ms.
17-03-17 22:30:43.418 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-17 22:30:43.418 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:30:43.418 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:30:43.428 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 378 ms.
17-03-17 22:30:43.428 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-17 22:30:43.428 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:30:43.428 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:30:43.428 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 22:30:43.428 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 22:30:43.598 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1207
17-03-17 22:30:43.598 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1207
17-03-17 22:30:43.598 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:30:43.598 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:30:43.598 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 1130172064, 0x0, 391868352) start.
17-03-17 22:30:43.598 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1207
17-03-17 22:30:43.598 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1207
17-03-17 22:30:43.608 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:30:43.608 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:30:43.608 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 1165594328, 0x0, 418435064) start.
17-03-17 22:30:43.788 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP 1399
17-03-17 22:30:43.788 -07 000000458 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:30:43.788 -07 000000610 INF: FPGA: 'CAMDBLSNAP 454 454 218 218 36980 150' command took 2 ms to send, 1398 ms to get response, and 1406 ms overall
17-03-17 22:30:43.798 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 22:30:43.798 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.02734375, Z-Position -0.168472822013634. ------
17-03-17 22:30:43.798 -07 000000448 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.17475 mm
17-03-17 22:30:43.798 -07 000000448 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:30:43.798 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:30:43.798 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:30:43.798 -07 000000627 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-17 22:30:43.798 -07 000000627 INF: Y Motor: Moving to 69.8726 mm, started at 69.0273 mm, delta = 0.8453 mm
17-03-17 22:30:43.798 -07 000000458 INF: Z Motor: Entering MoveAbsStepped (DAC = 38174, sync = True, waitForSettling = False)
17-03-17 22:30:43.798 -07 000000458 INF: Z Motor: Moving to -0.174749 mm, started at -0.168473 mm, distance = -6.28 um
17-03-17 22:30:43.808 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 22:30:43.808 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:30:43.808 -07 000000618 INF: FPGA: Recv YRDPOS 141368
17-03-17 22:30:43.818 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:30:43.818 -07 000000458 INF: FPGA: Xmit ZDACW 38174\n [Z Motor]
17-03-17 22:30:43.818 -07 000000627 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:30:43.818 -07 000000627 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:30:43.818 -07 000000627 INF: Y Motor: Moving 1352 steps-32
17-03-17 22:30:43.818 -07 000000462 INF: FPGA: Recv ZDACW
17-03-17 22:30:43.828 -07 000000431 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:30:43.828 -07 000000458 INF: FPGA: 'ZDACW 38174' command took 0 ms to send, 0 ms to get response, and 20 ms overall
17-03-17 22:30:43.838 -07 000000627 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:30:43.848 -07 000000458 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:30:43.848 -07 000000486 INF: FPGA: Recv ZDACR 38174
17-03-17 22:30:43.858 -07 000000458 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:30:43.858 -07 000000458 INF: Z Motor: MoveAbsStepped took 50 ms (did NOT wait for settling yet))
17-03-17 22:30:43.988 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 1165594328, 0x0, 418435064) end. Duration was 387 ms.
17-03-17 22:30:43.988 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 22:30:43.988 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:30:43.988 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 1130172064, 0x0, 391868352) end. Duration was 390 ms.
17-03-17 22:30:43.988 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 22:30:43.988 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:30:43.998 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:30:43.998 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 22:30:43.998 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 22:30:43.998 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 22:30:44.028 -07 000000476 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:30:44.028 -07 000000431 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 22:30:44.218 -07 000000462 INF: FPGA: Recv YMVTILE
17-03-17 22:30:44.218 -07 000000627 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 399 ms overall
17-03-17 22:30:44.258 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:30:44.258 -07 000000429 INF: FPGA: Recv YRDPOS 143080
17-03-17 22:30:44.268 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:44.268 -07 000000627 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:30:44.268 -07 000000627 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-17 22:30:44.268 -07 000000627 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 400 ms, distance = 0.845 mm, average velocity = 2.113 mm/sec
17-03-17 22:30:45.218 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:30:45.218 -07 000000012 INF: FPGA: Recv YRDPOS 143080
17-03-17 22:30:45.228 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:30:45.228 -07 000000627 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:30:45.248 -07 000000627 INF: Y Motor: After move to 69.872612, error = -0.009331, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:30:45.248 -07 000000627 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:30:45.248 -07 000000627 INF: Y Motor: Moved to 69.8633 after 1446 ms (table move)
17-03-17 22:30:45.248 -07 000000448 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174749 mm (DAC = 38174)
17-03-17 22:30:45.248 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:45.258 -07 000000618 INF: FPGA: Recv ZSGSRD 36491
17-03-17 22:30:45.258 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-17 22:30:45.258 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:45.258 -07 000000476 INF: FPGA: Recv ZSGSRD 36492
17-03-17 22:30:45.268 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:30:45.268 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:45.268 -07 000000627 INF: FPGA: Recv ZSGSRD 36491
17-03-17 22:30:45.278 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:45.278 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:45.278 -07 000000012 INF: FPGA: Recv ZSGSRD 36492
17-03-17 22:30:45.288 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:45.288 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:45.288 -07 000000480 INF: FPGA: Recv ZSGSRD 36487
17-03-17 22:30:45.298 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:45.298 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:45.298 -07 000000561 INF: FPGA: Recv ZSGSRD 36492
17-03-17 22:30:45.308 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:45.308 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:45.308 -07 000000486 INF: FPGA: Recv ZSGSRD 36492
17-03-17 22:30:45.318 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:45.318 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:45.318 -07 000000012 INF: FPGA: Recv ZSGSRD 36499
17-03-17 22:30:45.328 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:45.328 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:45.328 -07 000000429 INF: FPGA: Recv ZSGSRD 36491
17-03-17 22:30:45.338 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:45.338 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:45.338 -07 000000476 INF: FPGA: Recv ZSGSRD 36491
17-03-17 22:30:45.348 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:45.348 -07 000000448 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:30:45.348 -07 000000458 INF: FPGA: Recv ZPIEZORD 32731
17-03-17 22:30:45.358 -07 000000448 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:45.358 -07 000000448 INF: Z Motor: Piezo is near 49.9 V (nominally 0 to 100 V), expect near 58.2 V, since DAC is at 5.825 V. Piezo Error = -8.3 V.
17-03-17 22:30:45.358 -07 000000448 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.7 um, Read 10 ADC samples: Avg = 36492 (-173.9 uncal um), Error = 0.9 uncal um, Median = 36492 (-173.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36487 (-173.8 uncal um), Max = 36499 (-173.9 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 22:30:45.358 -07 000000448 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36492, posNoise = 7, negNoise = 5
17-03-17 22:30:45.358 -07 000000448 INF: Z Motor: After move to -0.174749, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:30:45.358 -07 000000448 INF: Z Motor: Settle wait time = 1449 ms, measure time = 102 ms (allowed 150 ms), total time = 1551 ms
17-03-17 22:30:45.358 -07 000000448 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 22:30:45.408 -07 000000448 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1605 ms
17-03-17 22:30:45.408 -07 000000448 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:30:45.408 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:30:45.408 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:30:45.408 -07 000000551 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:30:45.408 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:30:45.408 -07 000000429 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:30:45.408 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:30:45.408 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:30:45.408 -07 000000429 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:30:45.418 -07 000000429 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:30:45.418 -07 000000429 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:30:45.428 -07 000000429 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 22:30:45.428 -07 000000429 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 22:30:45.428 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:30:45.468 -07 000000561 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:30:45.668 -07 000000429 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:30:45.668 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:30:45.668 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:30:45.678 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 594000200, 0x0, 559484976) start.
17-03-17 22:30:45.708 -07 000000431 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:30:45.708 -07 000000458 INF: FPGA: Recv CAMSNAP
17-03-17 22:30:45.708 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 285 ms overall
17-03-17 22:30:45.798 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 594000200, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 22:30:45.798 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:30:45.798 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:30:45.798 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 22:30:45.908 -07 000000012 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:30:45.908 -07 000000551 INF: Autofocus start
17-03-17 22:30:45.908 -07 000000551 INF: MeasureProfile start
17-03-17 22:30:45.908 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:30:45.918 -07 000000012 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 22:30:45.918 -07 000000012 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:30:45.918 -07 000000551 INF: MeasureProfile done
17-03-17 22:30:45.918 -07 000000551 INF: X=48  Z correction [um]=0.1739867
17-03-17 22:30:45.918 -07 000000551 INF: Autofocus finished
17-03-17 22:30:46.118 -07 000000429 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:30:46.118 -07 000000012 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:30:46.118 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86328125, Z-position -0.174755701488276. ----------
17-03-17 22:30:46.118 -07 000000610 INF: Cycle	64	Tile	13	Exposure Settings		A	454	G	218	T	218	C	454
17-03-17 22:30:46.128 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36725, sync = True, waitForSettling = True)
17-03-17 22:30:46.128 -07 000000610 INF: Z Motor: Moving to -0.168116 mm, started at -0.174756 mm, distance = 6.64 um
17-03-17 22:30:46.128 -07 000000610 INF: FPGA: Xmit ZDACW 36725\n [Z Motor]
17-03-17 22:30:46.128 -07 000000429 INF: FPGA: Recv ZDACW
17-03-17 22:30:46.138 -07 000000610 INF: FPGA: 'ZDACW 36725' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:30:46.138 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:30:46.138 -07 000000458 INF: FPGA: Recv ZDACR 36725
17-03-17 22:30:46.148 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:46.148 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:30:46.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:46.298 -07 000000476 INF: FPGA: Recv ZSGSRD 35462
17-03-17 22:30:46.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:46.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:46.308 -07 000000424 INF: FPGA: Recv ZSGSRD 35465
17-03-17 22:30:46.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:46.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:46.318 -07 000000448 INF: FPGA: Recv ZSGSRD 35462
17-03-17 22:30:46.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:46.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:46.328 -07 000000462 INF: FPGA: Recv ZSGSRD 35458
17-03-17 22:30:46.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:46.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:46.338 -07 000000626 INF: FPGA: Recv ZSGSRD 35456
17-03-17 22:30:46.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:46.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:46.348 -07 000000429 INF: FPGA: Recv ZSGSRD 35463
17-03-17 22:30:46.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:46.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:46.358 -07 000000448 INF: FPGA: Recv ZSGSRD 35455
17-03-17 22:30:46.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:46.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:46.368 -07 000000462 INF: FPGA: Recv ZSGSRD 35461
17-03-17 22:30:46.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:46.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:46.378 -07 000000626 INF: FPGA: Recv ZSGSRD 35458
17-03-17 22:30:46.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:46.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:46.388 -07 000000476 INF: FPGA: Recv ZSGSRD 35461
17-03-17 22:30:46.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:46.398 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:30:46.398 -07 000000012 INF: FPGA: Recv ZPIEZORD 31378
17-03-17 22:30:46.408 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:46.408 -07 000000610 INF: Z Motor: Piezo is near 47.0 V (nominally 0 to 100 V), expect near 56.0 V, since DAC is at 5.604 V. Piezo Error = -9.0 V.
17-03-17 22:30:46.408 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.1 um, Read 10 ADC samples: Avg = 35460 (-167.3 uncal um), Error = 0.9 uncal um, Median = 35461 (-167.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35455 (-167.2 uncal um), Max = 35465 (-167.3 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 22:30:46.408 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35460, posNoise = 5, negNoise = 5
17-03-17 22:30:46.408 -07 000000610 INF: Z Motor: After move to -0.168116, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:30:46.408 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 22:30:46.408 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:30:46.408 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:30:46.408 -07 000000458 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:30:46.408 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:30:46.408 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:30:46.408 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:30:46.408 -07 000000486 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:30:46.408 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:30:46.408 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:30:46.408 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:30:46.408 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:30:46.408 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:30:46.418 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:30:46.418 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:30:46.418 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 22:30:46.418 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:30:46.428 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 12 ms.
17-03-17 22:30:46.428 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 17 ms.
17-03-17 22:30:46.428 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 12 ms.
17-03-17 22:30:46.428 -07 000000486 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 18 ms.
17-03-17 22:30:46.428 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 454 454 218 218 36901 150\n [Camera]
17-03-17 22:30:46.628 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:30:46.978 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:30:46.978 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 63. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1016, R2=1046, Total=2062. Warn if over 250 bubbles per interval.
17-03-17 22:30:47.088 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 646
17-03-17 22:30:47.088 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 646
17-03-17 22:30:47.088 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:30:47.088 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:30:47.088 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 22:30:47.088 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 646
17-03-17 22:30:47.088 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 646
17-03-17 22:30:47.088 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:30:47.088 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:30:47.088 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 22:30:47.278 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36901 839
17-03-17 22:30:47.428 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning grn on 989
17-03-17 22:30:47.468 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 382 ms.
17-03-17 22:30:47.468 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 22:30:47.468 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:30:47.468 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 380 ms.
17-03-17 22:30:47.468 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-17 22:30:47.468 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:30:47.468 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:30:47.478 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 22:30:47.478 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 22:30:47.478 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 22:30:47.558 -07 000000486 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 64, FrontChillerTemperature: 4.023489,
17-03-17 22:30:47.648 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1207
17-03-17 22:30:47.648 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1207
17-03-17 22:30:47.648 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:30:47.648 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:30:47.648 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-17 22:30:47.648 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1207
17-03-17 22:30:47.648 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1207
17-03-17 22:30:47.648 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:30:47.648 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:30:47.648 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 22:30:47.838 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP 1399
17-03-17 22:30:47.838 -07 000000429 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:30:47.838 -07 000000610 INF: FPGA: 'CAMDBLSNAP 454 454 218 218 36901 150' command took 2 ms to send, 1403 ms to get response, and 1406 ms overall
17-03-17 22:30:47.838 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 22:30:47.838 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.86328125, Z-Position -0.168125914557978. ------
17-03-17 22:30:47.838 -07 000000551 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:30:47.838 -07 000000462 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.17458 mm
17-03-17 22:30:47.838 -07 000000462 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:30:47.968 -07 000000627 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:30:47.968 -07 000000551 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 123 ms to get response, and 123 ms overall
17-03-17 22:30:47.968 -07 000000486 INF: Z Motor: Entering MoveAbsStepped (DAC = 38138, sync = True, waitForSettling = False)
17-03-17 22:30:47.968 -07 000000486 INF: Z Motor: Moving to -0.174585 mm, started at -0.168126 mm, distance = -6.46 um
17-03-17 22:30:47.968 -07 000000424 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-17 22:30:47.968 -07 000000424 INF: Y Motor: Moving to 70.7026 mm, started at 69.8633 mm, delta = 0.8393 mm
17-03-17 22:30:47.978 -07 000000551 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:30:47.988 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:30:47.988 -07 000000618 INF: FPGA: Recv YRDPOS 143080
17-03-17 22:30:47.998 -07 000000486 INF: FPGA: Xmit ZDACW 38138\n [Z Motor]
17-03-17 22:30:47.998 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-17 22:30:47.998 -07 000000424 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:30:47.998 -07 000000424 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:30:47.998 -07 000000424 INF: Y Motor: Moving 1343 steps-19
17-03-17 22:30:47.998 -07 000000429 INF: FPGA: Recv ZDACW
17-03-17 22:30:48.008 -07 000000486 INF: FPGA: 'ZDACW 38138' command took 0 ms to send, 0 ms to get response, and 34 ms overall
17-03-17 22:30:48.018 -07 000000424 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:30:48.028 -07 000000486 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:30:48.028 -07 000000429 INF: FPGA: Recv ZDACR 38138
17-03-17 22:30:48.028 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 387 ms.
17-03-17 22:30:48.028 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 22:30:48.028 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:30:48.038 -07 000000486 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:30:48.038 -07 000000486 INF: Z Motor: MoveAbsStepped took 64 ms (did NOT wait for settling yet))
17-03-17 22:30:48.038 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 388 ms.
17-03-17 22:30:48.038 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 22:30:48.038 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:30:48.038 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:30:48.038 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-17 22:30:48.038 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 22:30:48.048 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 22:30:48.178 -07 000000618 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:30:48.178 -07 000000551 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 209 ms overall
17-03-17 22:30:48.388 -07 000000429 INF: FPGA: Recv YMVTILE
17-03-17 22:30:48.388 -07 000000424 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 396 ms overall
17-03-17 22:30:48.428 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:30:48.428 -07 000000486 INF: FPGA: Recv YRDPOS 144770
17-03-17 22:30:48.438 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:30:48.438 -07 000000424 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:30:48.438 -07 000000424 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-17 22:30:48.438 -07 000000424 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.839 mm, average velocity = 2.114 mm/sec
17-03-17 22:30:49.388 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:30:49.388 -07 000000618 INF: FPGA: Recv YRDPOS 144770
17-03-17 22:30:49.398 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:30:49.398 -07 000000424 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:30:49.418 -07 000000424 INF: Y Motor: After move to 70.702606, error = -0.014130, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:30:49.418 -07 000000424 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:30:49.418 -07 000000424 INF: Y Motor: Moved to 70.6885 after 1448 ms (table move)
17-03-17 22:30:49.418 -07 000000462 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174585 mm (DAC = 38138)
17-03-17 22:30:49.418 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:49.428 -07 000000458 INF: FPGA: Recv ZSGSRD 36470
17-03-17 22:30:49.428 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 22:30:49.428 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:49.428 -07 000000424 INF: FPGA: Recv ZSGSRD 36471
17-03-17 22:30:49.438 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:30:49.438 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:49.438 -07 000000618 INF: FPGA: Recv ZSGSRD 36467
17-03-17 22:30:49.448 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:49.448 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:49.448 -07 000000551 INF: FPGA: Recv ZSGSRD 36465
17-03-17 22:30:49.458 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:49.458 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:49.458 -07 000000618 INF: FPGA: Recv ZSGSRD 36469
17-03-17 22:30:49.468 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:49.468 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:49.468 -07 000000424 INF: FPGA: Recv ZSGSRD 36468
17-03-17 22:30:49.478 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:49.478 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:49.478 -07 000000480 INF: FPGA: Recv ZSGSRD 36473
17-03-17 22:30:49.488 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:49.488 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:49.488 -07 000000627 INF: FPGA: Recv ZSGSRD 36464
17-03-17 22:30:49.498 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:49.498 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:49.498 -07 000000551 INF: FPGA: Recv ZSGSRD 36464
17-03-17 22:30:49.508 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:49.508 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:49.508 -07 000000424 INF: FPGA: Recv ZSGSRD 36462
17-03-17 22:30:49.518 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:49.518 -07 000000462 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:30:49.518 -07 000000448 INF: FPGA: Recv ZPIEZORD 32744
17-03-17 22:30:49.528 -07 000000462 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:49.528 -07 000000462 INF: Z Motor: Piezo is near 49.9 V (nominally 0 to 100 V), expect near 58.2 V, since DAC is at 5.819 V. Piezo Error = -8.2 V.
17-03-17 22:30:49.528 -07 000000462 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.6 um, Read 10 ADC samples: Avg = 36467 (-173.7 uncal um), Error = 0.9 uncal um, Median = 36468 (-173.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36462 (-173.7 uncal um), Max = 36473 (-173.7 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 22:30:49.528 -07 000000462 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36467, posNoise = 6, negNoise = 5
17-03-17 22:30:49.528 -07 000000462 INF: Z Motor: After move to -0.174585, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:30:49.528 -07 000000462 INF: Z Motor: Settle wait time = 1453 ms, measure time = 102 ms (allowed 150 ms), total time = 1555 ms
17-03-17 22:30:49.528 -07 000000462 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 22:30:49.578 -07 000000462 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1730 ms
17-03-17 22:30:49.578 -07 000000462 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:30:49.578 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:30:49.578 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:30:49.578 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:30:49.588 -07 000000458 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:30:49.588 -07 000000551 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:30:49.588 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:30:49.588 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 22:30:49.588 -07 000000551 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:30:49.588 -07 000000551 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:30:49.588 -07 000000551 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:30:49.598 -07 000000551 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-17 22:30:49.598 -07 000000551 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-17 22:30:49.598 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:30:49.648 -07 000000618 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:30:49.848 -07 000000618 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:30:49.848 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:30:49.848 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:30:49.848 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 22:30:49.888 -07 000000448 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:30:49.888 -07 000000618 INF: FPGA: Recv CAMSNAP
17-03-17 22:30:49.888 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 285 ms overall
17-03-17 22:30:49.968 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 120 ms.
17-03-17 22:30:49.968 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:30:49.968 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:30:49.968 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 122 ms.
17-03-17 22:30:49.988 -07 000000618 INF: Autofocus start
17-03-17 22:30:49.988 -07 000000618 INF: MeasureProfile start
17-03-17 22:30:49.988 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:30:49.988 -07 000000486 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:30:49.998 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 22:30:49.998 -07 000000424 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:30:49.998 -07 000000618 INF: MeasureProfile done
17-03-17 22:30:49.998 -07 000000618 INF: X=0  Z correction [um]=-0.0713522
17-03-17 22:30:49.998 -07 000000618 INF: Autofocus finished
17-03-17 22:30:50.198 -07 000000448 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:30:50.198 -07 000000424 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:30:50.198 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.6884765625, Z-position -0.174595096184732. ----------
17-03-17 22:30:50.198 -07 000000610 INF: Cycle	64	Tile	14	Exposure Settings		A	454	G	218	T	218	C	454
17-03-17 22:30:50.208 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36635, sync = True, waitForSettling = True)
17-03-17 22:30:50.208 -07 000000610 INF: Z Motor: Moving to -0.167704 mm, started at -0.174595 mm, distance = 6.89 um
17-03-17 22:30:50.208 -07 000000610 INF: FPGA: Xmit ZDACW 36635\n [Z Motor]
17-03-17 22:30:50.208 -07 000000486 INF: FPGA: Recv ZDACW
17-03-17 22:30:50.218 -07 000000610 INF: FPGA: 'ZDACW 36635' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:30:50.218 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:30:50.218 -07 000000486 INF: FPGA: Recv ZDACR 36635
17-03-17 22:30:50.228 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:50.228 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:30:50.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:50.378 -07 000000627 INF: FPGA: Recv ZSGSRD 35393
17-03-17 22:30:50.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:50.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:50.388 -07 000000486 INF: FPGA: Recv ZSGSRD 35395
17-03-17 22:30:50.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:50.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:50.398 -07 000000480 INF: FPGA: Recv ZSGSRD 35394
17-03-17 22:30:50.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:50.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:50.408 -07 000000551 INF: FPGA: Recv ZSGSRD 35396
17-03-17 22:30:50.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:50.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:50.418 -07 000000627 INF: FPGA: Recv ZSGSRD 35394
17-03-17 22:30:50.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:50.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:50.428 -07 000000551 INF: FPGA: Recv ZSGSRD 35395
17-03-17 22:30:50.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:50.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:50.438 -07 000000627 INF: FPGA: Recv ZSGSRD 35394
17-03-17 22:30:50.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:50.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:50.448 -07 000000551 INF: FPGA: Recv ZSGSRD 35391
17-03-17 22:30:50.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:50.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:50.458 -07 000000627 INF: FPGA: Recv ZSGSRD 35392
17-03-17 22:30:50.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:50.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:50.468 -07 000000551 INF: FPGA: Recv ZSGSRD 35400
17-03-17 22:30:50.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:50.478 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:30:50.478 -07 000000627 INF: FPGA: Recv ZPIEZORD 31340
17-03-17 22:30:50.488 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:50.488 -07 000000610 INF: Z Motor: Piezo is near 47.0 V (nominally 0 to 100 V), expect near 55.9 V, since DAC is at 5.590 V. Piezo Error = -9.0 V.
17-03-17 22:30:50.488 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.7 um, Read 10 ADC samples: Avg = 35394 (-166.8 uncal um), Error = 0.9 uncal um, Median = 35394 (-166.8 uncal um), StdDev = 2 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35391 (-166.8 uncal um), Max = 35400 (-166.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 22:30:50.488 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35394, posNoise = 6, negNoise = 3
17-03-17 22:30:50.488 -07 000000610 INF: Z Motor: After move to -0.167704, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:30:50.488 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 22:30:50.488 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:30:50.488 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:30:50.488 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:30:50.488 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:30:50.488 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:30:50.488 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:30:50.488 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:30:50.488 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:30:50.488 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:30:50.488 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:30:50.488 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:30:50.488 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:30:50.498 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:30:50.498 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:30:50.498 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 22:30:50.498 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:30:50.508 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 22:30:50.508 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 22:30:50.508 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 22:30:50.508 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 22:30:50.508 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 454 454 218 218 36812 150\n [Camera]
17-03-17 22:30:50.708 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:30:51.158 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 646
17-03-17 22:30:51.158 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 646
17-03-17 22:30:51.158 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:30:51.168 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 646
17-03-17 22:30:51.168 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 646
17-03-17 22:30:51.168 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:30:51.168 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:30:51.168 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 22:30:51.178 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:30:51.178 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 1458343128, 0x0, 418435064) start.
17-03-17 22:30:51.358 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36812 839
17-03-17 22:30:51.498 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning grn on 989
17-03-17 22:30:51.538 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 373 ms.
17-03-17 22:30:51.538 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-17 22:30:51.538 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:30:51.548 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 1458343128, 0x0, 418435064) end. Duration was 370 ms.
17-03-17 22:30:51.548 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-17 22:30:51.548 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:30:51.548 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:30:51.548 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 22:30:51.548 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:30:51.558 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 22:30:51.718 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1207
17-03-17 22:30:51.718 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1207
17-03-17 22:30:51.718 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:30:51.728 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1207
17-03-17 22:30:51.728 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1207
17-03-17 22:30:51.728 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:30:51.728 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:30:51.728 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 22:30:51.738 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:30:51.738 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 22:30:51.908 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP 1400
17-03-17 22:30:51.918 -07 000000618 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:30:51.918 -07 000000610 INF: FPGA: 'CAMDBLSNAP 454 454 218 218 36812 150' command took 2 ms to send, 1400 ms to get response, and 1406 ms overall
17-03-17 22:30:51.918 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 22:30:51.918 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.6884765625, Z-Position -0.167701916556622. ------
17-03-17 22:30:51.918 -07 000000551 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:30:51.918 -07 000000462 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.17408 mm
17-03-17 22:30:51.918 -07 000000462 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:30:52.038 -07 000000458 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:30:52.038 -07 000000458 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:30:52.038 -07 000000551 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 121 ms overall
17-03-17 22:30:52.038 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 63. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1016, R2=1046, Total=2062. Warn if over 250 bubbles per interval.
17-03-17 22:30:52.038 -07 000000618 INF: Z Motor: Entering MoveAbsStepped (DAC = 38027, sync = True, waitForSettling = False)
17-03-17 22:30:52.038 -07 000000618 INF: Z Motor: Moving to -0.174076 mm, started at -0.167702 mm, distance = -6.37 um
17-03-17 22:30:52.038 -07 000000429 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-17 22:30:52.038 -07 000000429 INF: Y Motor: Moving to 71.5326 mm, started at 70.6885 mm, delta = 0.8441 mm
17-03-17 22:30:52.038 -07 000000551 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:30:52.048 -07 000000618 INF: FPGA: Xmit ZDACW 38027\n [Z Motor]
17-03-17 22:30:52.048 -07 000000476 INF: FPGA: Recv ZDACW
17-03-17 22:30:52.058 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:30:52.058 -07 000000618 INF: FPGA: 'ZDACW 38027' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 22:30:52.058 -07 000000012 INF: FPGA: Recv YRDPOS 144771
17-03-17 22:30:52.068 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-17 22:30:52.068 -07 000000429 INF: Y Motor: Encoder = 144771 = motor step 113102.3 = 70.6890 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:30:52.068 -07 000000618 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:30:52.068 -07 000000476 INF: FPGA: Recv ZDACR 38027
17-03-17 22:30:52.068 -07 000000429 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:30:52.068 -07 000000429 INF: Y Motor: Moving 1350 steps-29
17-03-17 22:30:52.078 -07 000000618 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:30:52.078 -07 000000618 INF: Z Motor: MoveAbsStepped took 31 ms (did NOT wait for settling yet))
17-03-17 22:30:52.078 -07 000000429 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:30:52.118 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 389 ms.
17-03-17 22:30:52.118 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 22:30:52.118 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:30:52.128 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 389 ms.
17-03-17 22:30:52.128 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 22:30:52.128 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:30:52.128 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:30:52.128 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-17 22:30:52.128 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-17 22:30:52.138 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-17 22:30:52.248 -07 000000458 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:30:52.248 -07 000000551 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 201 ms to get response, and 203 ms overall
17-03-17 22:30:52.448 -07 000000618 INF: FPGA: Recv YMVTILE
17-03-17 22:30:52.448 -07 000000429 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 383 ms overall
17-03-17 22:30:52.488 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:30:52.498 -07 000000458 INF: FPGA: Recv YRDPOS 146471
17-03-17 22:30:52.498 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 22:30:52.498 -07 000000429 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:30:52.498 -07 000000429 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 22:30:52.498 -07 000000429 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 383 ms, distance = 0.844 mm, average velocity = 2.204 mm/sec
17-03-17 22:30:52.918 -07 000000551 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 64, FrontChillerTemperature: 4.009895,
17-03-17 22:30:53.448 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:30:53.448 -07 000000476 INF: FPGA: Recv YRDPOS 146471
17-03-17 22:30:53.458 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:30:53.458 -07 000000429 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:30:53.478 -07 000000429 INF: Y Motor: After move to 71.532608, error = -0.013565, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:30:53.478 -07 000000429 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:30:53.478 -07 000000429 INF: Y Motor: Moved to 71.5190 after 1438 ms (table move)
17-03-17 22:30:53.488 -07 000000462 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174076 mm (DAC = 38027)
17-03-17 22:30:53.488 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:53.488 -07 000000424 INF: FPGA: Recv ZSGSRD 36387
17-03-17 22:30:53.498 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:53.498 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:53.498 -07 000000424 INF: FPGA: Recv ZSGSRD 36384
17-03-17 22:30:53.508 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:53.508 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:53.508 -07 000000429 INF: FPGA: Recv ZSGSRD 36390
17-03-17 22:30:53.518 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:53.518 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:53.518 -07 000000448 INF: FPGA: Recv ZSGSRD 36395
17-03-17 22:30:53.528 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:53.528 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:53.528 -07 000000431 INF: FPGA: Recv ZSGSRD 36389
17-03-17 22:30:53.538 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:53.538 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:53.538 -07 000000431 INF: FPGA: Recv ZSGSRD 36382
17-03-17 22:30:53.548 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:53.548 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:53.548 -07 000000480 INF: FPGA: Recv ZSGSRD 36388
17-03-17 22:30:53.558 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:53.558 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:53.558 -07 000000424 INF: FPGA: Recv ZSGSRD 36384
17-03-17 22:30:53.568 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:53.568 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:53.568 -07 000000012 INF: FPGA: Recv ZSGSRD 36382
17-03-17 22:30:53.578 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:53.578 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:53.578 -07 000000429 INF: FPGA: Recv ZSGSRD 36385
17-03-17 22:30:53.588 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:53.588 -07 000000462 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:30:53.588 -07 000000012 INF: FPGA: Recv ZPIEZORD 32654
17-03-17 22:30:53.598 -07 000000462 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:53.598 -07 000000462 INF: Z Motor: Piezo is near 49.8 V (nominally 0 to 100 V), expect near 58.0 V, since DAC is at 5.803 V. Piezo Error = -8.3 V.
17-03-17 22:30:53.598 -07 000000462 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.1 um, Read 10 ADC samples: Avg = 36387 (-173.2 uncal um), Error = 0.9 uncal um, Median = 36386 (-173.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36382 (-173.2 uncal um), Max = 36395 (-173.2 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 22:30:53.598 -07 000000462 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36387, posNoise = 8, negNoise = 5
17-03-17 22:30:53.598 -07 000000462 INF: Z Motor: After move to -0.174076, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:30:53.598 -07 000000462 INF: Z Motor: Settle wait time = 1442 ms, measure time = 110 ms (allowed 150 ms), total time = 1552 ms
17-03-17 22:30:53.598 -07 000000462 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-17 22:30:53.638 -07 000000462 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1714 ms
17-03-17 22:30:53.638 -07 000000462 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:30:53.638 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:30:53.638 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:30:53.638 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:30:53.638 -07 000000448 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:30:53.638 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:30:53.638 -07 000000458 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:30:53.648 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 22:30:53.648 -07 000000448 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:30:53.648 -07 000000448 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 22:30:53.648 -07 000000448 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:30:53.658 -07 000000448 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 22:30:53.658 -07 000000448 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 22:30:53.658 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:30:53.698 -07 000000424 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:30:53.898 -07 000000431 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:30:53.898 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:30:53.908 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:30:53.908 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 22:30:53.938 -07 000000627 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:30:53.938 -07 000000480 INF: FPGA: Recv CAMSNAP
17-03-17 22:30:53.938 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 284 ms overall
17-03-17 22:30:54.018 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 22:30:54.018 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:30:54.018 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:30:54.018 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 22:30:54.038 -07 000000431 INF: Autofocus start
17-03-17 22:30:54.038 -07 000000431 INF: MeasureProfile start
17-03-17 22:30:54.038 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:30:54.038 -07 000000458 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:30:54.048 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:30:54.048 -07 000000424 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:30:54.048 -07 000000431 INF: MeasureProfile done
17-03-17 22:30:54.048 -07 000000431 INF: X=96  Z correction [um]=0.4193256
17-03-17 22:30:54.048 -07 000000431 INF: Autofocus finished
17-03-17 22:30:54.248 -07 000000429 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:30:54.248 -07 000000424 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:30:54.248 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.51904296875, Z-position -0.174081159213391. ----------
17-03-17 22:30:54.248 -07 000000610 INF: Cycle	64	Tile	15	Exposure Settings		A	454	G	218	T	218	C	454
17-03-17 22:30:54.258 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36631, sync = True, waitForSettling = True)
17-03-17 22:30:54.258 -07 000000610 INF: Z Motor: Moving to -0.167686 mm, started at -0.174081 mm, distance = 6.40 um
17-03-17 22:30:54.258 -07 000000610 INF: FPGA: Xmit ZDACW 36631\n [Z Motor]
17-03-17 22:30:54.258 -07 000000012 INF: FPGA: Recv ZDACW
17-03-17 22:30:54.268 -07 000000610 INF: FPGA: 'ZDACW 36631' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:54.268 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:30:54.268 -07 000000429 INF: FPGA: Recv ZDACR 36631
17-03-17 22:30:54.278 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:54.278 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:30:54.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:54.428 -07 000000627 INF: FPGA: Recv ZSGSRD 35393
17-03-17 22:30:54.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:30:54.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:54.438 -07 000000429 INF: FPGA: Recv ZSGSRD 35392
17-03-17 22:30:54.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:54.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:54.448 -07 000000627 INF: FPGA: Recv ZSGSRD 35400
17-03-17 22:30:54.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:54.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:54.458 -07 000000458 INF: FPGA: Recv ZSGSRD 35392
17-03-17 22:30:54.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:54.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:54.468 -07 000000424 INF: FPGA: Recv ZSGSRD 35397
17-03-17 22:30:54.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:30:54.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:54.478 -07 000000429 INF: FPGA: Recv ZSGSRD 35404
17-03-17 22:30:54.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:54.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:54.488 -07 000000424 INF: FPGA: Recv ZSGSRD 35390
17-03-17 22:30:54.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:54.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:54.498 -07 000000448 INF: FPGA: Recv ZSGSRD 35394
17-03-17 22:30:54.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:54.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:54.508 -07 000000462 INF: FPGA: Recv ZSGSRD 35387
17-03-17 22:30:54.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:54.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:54.518 -07 000000480 INF: FPGA: Recv ZSGSRD 35391
17-03-17 22:30:54.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:54.528 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:30:54.528 -07 000000627 INF: FPGA: Recv ZPIEZORD 31319
17-03-17 22:30:54.538 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:54.538 -07 000000610 INF: Z Motor: Piezo is near 46.9 V (nominally 0 to 100 V), expect near 55.9 V, since DAC is at 5.590 V. Piezo Error = -9.0 V.
17-03-17 22:30:54.538 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.7 um, Read 10 ADC samples: Avg = 35394 (-166.8 uncal um), Error = 0.9 uncal um, Median = 35392 (-166.8 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 35387 (-166.8 uncal um), Max = 35404 (-166.9 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 22:30:54.538 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35394, posNoise = 10, negNoise = 7
17-03-17 22:30:54.538 -07 000000610 INF: Z Motor: After move to -0.167686, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:30:54.538 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 22:30:54.538 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:30:54.538 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:30:54.538 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:30:54.538 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:30:54.538 -07 000000429 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:30:54.538 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:30:54.538 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:30:54.538 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:30:54.538 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 22:30:54.538 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:30:54.538 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:30:54.538 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:30:54.538 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 22:30:54.538 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:30:54.548 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:30:54.548 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:30:54.548 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 22:30:54.548 -07 000000429 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 22:30:54.548 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 22:30:54.548 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 22:30:54.558 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 454 454 218 218 36808 150\n [Camera]
17-03-17 22:30:54.758 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:30:55.218 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 649
17-03-17 22:30:55.218 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 649
17-03-17 22:30:55.218 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:30:55.218 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 649
17-03-17 22:30:55.218 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 649
17-03-17 22:30:55.218 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:30:55.218 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:30:55.218 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 656674232, 0x0, 418435064) start.
17-03-17 22:30:55.218 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:30:55.218 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 22:30:55.408 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36808 839
17-03-17 22:30:55.558 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning grn on 989
17-03-17 22:30:55.618 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 394 ms.
17-03-17 22:30:55.618 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 22:30:55.618 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:30:55.618 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 656674232, 0x0, 418435064) end. Duration was 398 ms.
17-03-17 22:30:55.618 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 22:30:55.618 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:30:55.618 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:30:55.618 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 22:30:55.618 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:30:55.628 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-17 22:30:55.768 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1207
17-03-17 22:30:55.768 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1207
17-03-17 22:30:55.778 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:30:55.778 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:30:55.778 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 1458343128, 0x0, 391868352) start.
17-03-17 22:30:55.778 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1207
17-03-17 22:30:55.778 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1207
17-03-17 22:30:55.778 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:30:55.778 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:30:55.778 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-17 22:30:55.968 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP 1399
17-03-17 22:30:55.968 -07 000000462 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:30:55.968 -07 000000610 INF: FPGA: 'CAMDBLSNAP 454 454 218 218 36808 150' command took 2 ms to send, 1400 ms to get response, and 1406 ms overall
17-03-17 22:30:55.968 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 22:30:55.968 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.51904296875, Z-Position -0.167701916556622. ------
17-03-17 22:30:55.968 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:30:55.968 -07 000000012 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.17404 mm
17-03-17 22:30:55.968 -07 000000012 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:30:55.978 -07 000000627 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:30:55.978 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:30:55.978 -07 000000424 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-17 22:30:55.978 -07 000000424 INF: Y Motor: Moving to 72.3626 mm, started at 71.5190 mm, delta = 0.8436 mm
17-03-17 22:30:55.978 -07 000000431 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:30:55.978 -07 000000480 INF: Z Motor: Entering MoveAbsStepped (DAC = 38019, sync = True, waitForSettling = False)
17-03-17 22:30:55.978 -07 000000480 INF: Z Motor: Moving to -0.174040 mm, started at -0.167702 mm, distance = -6.34 um
17-03-17 22:30:55.988 -07 000000480 INF: FPGA: Xmit ZDACW 38019\n [Z Motor]
17-03-17 22:30:55.988 -07 000000462 INF: FPGA: Recv ZDACW
17-03-17 22:30:55.998 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:30:55.998 -07 000000480 INF: FPGA: 'ZDACW 38019' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-17 22:30:55.998 -07 000000626 INF: FPGA: Recv YRDPOS 146471
17-03-17 22:30:56.008 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-17 22:30:56.008 -07 000000424 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:30:56.008 -07 000000424 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:30:56.008 -07 000000424 INF: Y Motor: Moving 1350 steps-28
17-03-17 22:30:56.008 -07 000000480 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:30:56.008 -07 000000448 INF: FPGA: Recv ZDACR 38019
17-03-17 22:30:56.018 -07 000000480 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:30:56.018 -07 000000480 INF: Z Motor: MoveAbsStepped took 38 ms (did NOT wait for settling yet))
17-03-17 22:30:56.018 -07 000000424 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:30:56.168 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 395 ms.
17-03-17 22:30:56.168 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 22:30:56.168 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:30:56.178 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 1458343128, 0x0, 391868352) end. Duration was 400 ms.
17-03-17 22:30:56.178 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 22:30:56.178 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:30:56.178 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:30:56.178 -07 000000480 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:30:56.178 -07 000000431 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-17 22:30:56.178 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 22:30:56.178 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-17 22:30:56.178 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-17 22:30:56.388 -07 000000480 INF: FPGA: Recv YMVTILE
17-03-17 22:30:56.388 -07 000000424 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-17 22:30:56.428 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:30:56.438 -07 000000462 INF: FPGA: Recv YRDPOS 148172
17-03-17 22:30:56.438 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 22:30:56.438 -07 000000424 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:30:56.438 -07 000000424 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-17 22:30:56.438 -07 000000424 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.844 mm, average velocity = 2.174 mm/sec
17-03-17 22:30:56.978 -07 000000431 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:30:56.978 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 63. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1016, R2=1046, Total=2062. Warn if over 250 bubbles per interval.
17-03-17 22:30:57.388 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:30:57.388 -07 000000448 INF: FPGA: Recv YRDPOS 148173
17-03-17 22:30:57.398 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:30:57.398 -07 000000424 INF: Y Motor: Encoder = 148173 = motor step 115760.2 = 72.3501 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:30:57.418 -07 000000424 INF: Y Motor: After move to 72.362610, error = -0.012512, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:30:57.418 -07 000000424 INF: Y Motor: Position error after settling (table move) = -26 encoder counts (-0.013 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 22:30:57.418 -07 000000424 INF: Y Motor: Moved to 72.3501 after 1444 ms (table move)
17-03-17 22:30:57.418 -07 000000012 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174040 mm (DAC = 38019)
17-03-17 22:30:57.418 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:57.428 -07 000000626 INF: FPGA: Recv ZSGSRD 36383
17-03-17 22:30:57.428 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 22:30:57.428 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:57.428 -07 000000424 INF: FPGA: Recv ZSGSRD 36385
17-03-17 22:30:57.438 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:30:57.438 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:57.438 -07 000000626 INF: FPGA: Recv ZSGSRD 36380
17-03-17 22:30:57.448 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:57.448 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:57.448 -07 000000424 INF: FPGA: Recv ZSGSRD 36383
17-03-17 22:30:57.458 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:57.458 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:57.458 -07 000000424 INF: FPGA: Recv ZSGSRD 36385
17-03-17 22:30:57.468 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:57.468 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:57.468 -07 000000424 INF: FPGA: Recv ZSGSRD 36384
17-03-17 22:30:57.478 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:57.478 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:57.478 -07 000000424 INF: FPGA: Recv ZSGSRD 36384
17-03-17 22:30:57.488 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:57.488 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:57.488 -07 000000424 INF: FPGA: Recv ZSGSRD 36383
17-03-17 22:30:57.498 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:57.498 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:57.498 -07 000000424 INF: FPGA: Recv ZSGSRD 36374
17-03-17 22:30:57.508 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:57.508 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:57.508 -07 000000448 INF: FPGA: Recv ZSGSRD 36381
17-03-17 22:30:57.518 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:30:57.518 -07 000000012 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:30:57.518 -07 000000448 INF: FPGA: Recv ZPIEZORD 32601
17-03-17 22:30:57.528 -07 000000012 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:57.528 -07 000000012 INF: Z Motor: Piezo is near 49.6 V (nominally 0 to 100 V), expect near 58.0 V, since DAC is at 5.801 V. Piezo Error = -8.4 V.
17-03-17 22:30:57.528 -07 000000012 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.0 um, Read 10 ADC samples: Avg = 36382 (-173.2 uncal um), Error = 0.9 uncal um, Median = 36383 (-173.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36374 (-173.1 uncal um), Max = 36385 (-173.2 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 22:30:57.528 -07 000000012 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36382, posNoise = 3, negNoise = 8
17-03-17 22:30:57.528 -07 000000012 INF: Z Motor: After move to -0.174040, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:30:57.528 -07 000000012 INF: Z Motor: Settle wait time = 1447 ms, measure time = 101 ms (allowed 150 ms), total time = 1548 ms
17-03-17 22:30:57.528 -07 000000012 INF: Z Motor: Waiting extra 49 ms after reading position to reach expected total of 150 ms
17-03-17 22:30:57.578 -07 000000012 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1602 ms
17-03-17 22:30:57.578 -07 000000012 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:30:57.578 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:30:57.578 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:30:57.578 -07 000000458 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:30:57.578 -07 000000448 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:30:57.578 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:30:57.578 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:30:57.578 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:30:57.578 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:30:57.588 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:30:57.588 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:30:57.598 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 22:30:57.598 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 22:30:57.598 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:30:57.648 -07 000000627 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:30:57.848 -07 000000627 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:30:57.848 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:30:57.848 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:30:57.848 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 594000200, 0x0, 559484976) start.
17-03-17 22:30:57.888 -07 000000458 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:30:57.888 -07 000000561 INF: FPGA: Recv CAMSNAP
17-03-17 22:30:57.888 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 284 ms overall
17-03-17 22:30:57.968 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 594000200, 0x0, 559484976) end. Duration was 125 ms.
17-03-17 22:30:57.968 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:30:57.978 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:30:57.978 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-17 22:30:57.988 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:30:57.988 -07 000000480 INF: Autofocus start
17-03-17 22:30:57.988 -07 000000480 INF: MeasureProfile start
17-03-17 22:30:57.988 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:30:57.998 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:30:57.998 -07 000000424 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:30:57.998 -07 000000480 INF: MeasureProfile done
17-03-17 22:30:57.998 -07 000000480 INF: X=0  Z correction [um]=-0.0713522
17-03-17 22:30:57.998 -07 000000480 INF: Autofocus finished
17-03-17 22:30:58.198 -07 000000448 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:30:58.198 -07 000000424 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-17 22:30:58.198 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.35009765625, Z-position -0.174049038152682. ----------
17-03-17 22:30:58.198 -07 000000610 INF: Cycle	64	Tile	16	Exposure Settings		A	454	G	218	T	218	C	454
17-03-17 22:30:58.208 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36516, sync = True, waitForSettling = True)
17-03-17 22:30:58.208 -07 000000610 INF: Z Motor: Moving to -0.167160 mm, started at -0.174049 mm, distance = 6.89 um
17-03-17 22:30:58.208 -07 000000610 INF: FPGA: Xmit ZDACW 36516\n [Z Motor]
17-03-17 22:30:58.208 -07 000000429 INF: FPGA: Recv ZDACW
17-03-17 22:30:58.218 -07 000000610 INF: FPGA: 'ZDACW 36516' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:30:58.218 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:30:58.218 -07 000000429 INF: FPGA: Recv ZDACR 36516
17-03-17 22:30:58.228 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:58.228 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:30:58.278 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 64, FrontChillerTemperature: 4.015368,
17-03-17 22:30:58.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:58.378 -07 000000429 INF: FPGA: Recv ZSGSRD 35314
17-03-17 22:30:58.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:58.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:58.388 -07 000000424 INF: FPGA: Recv ZSGSRD 35308
17-03-17 22:30:58.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:58.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:58.398 -07 000000424 INF: FPGA: Recv ZSGSRD 35310
17-03-17 22:30:58.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:58.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:58.408 -07 000000458 INF: FPGA: Recv ZSGSRD 35312
17-03-17 22:30:58.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:58.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:58.418 -07 000000458 INF: FPGA: Recv ZSGSRD 35306
17-03-17 22:30:58.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:58.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:58.438 -07 000000448 INF: FPGA: Recv ZSGSRD 35309
17-03-17 22:30:58.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:30:58.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:58.448 -07 000000448 INF: FPGA: Recv ZSGSRD 35310
17-03-17 22:30:58.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:58.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:58.458 -07 000000448 INF: FPGA: Recv ZSGSRD 35312
17-03-17 22:30:58.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:58.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:58.468 -07 000000448 INF: FPGA: Recv ZSGSRD 35306
17-03-17 22:30:58.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:58.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:30:58.478 -07 000000448 INF: FPGA: Recv ZSGSRD 35310
17-03-17 22:30:58.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:58.488 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:30:58.488 -07 000000448 INF: FPGA: Recv ZPIEZORD 31219
17-03-17 22:30:58.498 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:30:58.498 -07 000000610 INF: Z Motor: Piezo is near 46.7 V (nominally 0 to 100 V), expect near 55.7 V, since DAC is at 5.572 V. Piezo Error = -9.0 V.
17-03-17 22:30:58.498 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.2 um, Read 10 ADC samples: Avg = 35310 (-166.3 uncal um), Error = 0.9 uncal um, Median = 35310 (-166.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35306 (-166.3 uncal um), Max = 35314 (-166.3 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 22:30:58.498 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35310, posNoise = 4, negNoise = 4
17-03-17 22:30:58.498 -07 000000610 INF: Z Motor: After move to -0.167160, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:30:58.498 -07 000000610 INF: Z Motor: MoveAbsStepped took 289 ms)
17-03-17 22:30:58.498 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:30:58.498 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:30:58.498 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:30:58.498 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:30:58.498 -07 000000458 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:30:58.498 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:30:58.498 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:30:58.498 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 22:30:58.498 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:30:58.498 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:30:58.498 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 3 ms.
17-03-17 22:30:58.498 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:30:58.508 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 5 ms.
17-03-17 22:30:58.508 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:30:58.508 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 22:30:58.508 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:30:58.518 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 22:30:58.518 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 22:30:58.518 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 22:30:58.518 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 22:30:58.518 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 454 454 218 218 36693 150\n [Camera]
17-03-17 22:30:58.718 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:30:59.168 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 646
17-03-17 22:30:59.168 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 646
17-03-17 22:30:59.168 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:30:59.168 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:30:59.168 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-17 22:30:59.168 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 646
17-03-17 22:30:59.168 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 646
17-03-17 22:30:59.178 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:30:59.178 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:30:59.178 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-17 22:30:59.358 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36693 839
17-03-17 22:30:59.518 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning grn on 991
17-03-17 22:30:59.548 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 22:30:59.548 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 22:30:59.548 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:30:59.548 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 378 ms.
17-03-17 22:30:59.548 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-17 22:30:59.548 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:30:59.558 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:30:59.558 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:30:59.558 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 22:30:59.558 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 22:30:59.728 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1207
17-03-17 22:30:59.728 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1207
17-03-17 22:30:59.728 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:30:59.728 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:30:59.728 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) start.
17-03-17 22:30:59.738 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1207
17-03-17 22:30:59.738 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1207
17-03-17 22:30:59.738 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:30:59.738 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:30:59.738 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 22:30:59.918 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP 1399
17-03-17 22:30:59.918 -07 000000480 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:30:59.918 -07 000000610 INF: FPGA: 'CAMDBLSNAP 454 454 218 218 36693 150' command took 2 ms to send, 1399 ms to get response, and 1406 ms overall
17-03-17 22:30:59.928 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 22:30:59.928 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.35009765625, Z-Position -0.167162282736714. ------
17-03-17 22:30:59.928 -07 000000561 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.17368 mm
17-03-17 22:30:59.928 -07 000000561 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:30:59.928 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:30:59.928 -07 000000462 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-17 22:30:59.928 -07 000000627 INF: Z Motor: Entering MoveAbsStepped (DAC = 37941, sync = True, waitForSettling = False)
17-03-17 22:30:59.928 -07 000000627 INF: Z Motor: Moving to -0.173683 mm, started at -0.167162 mm, distance = -6.52 um
17-03-17 22:30:59.928 -07 000000462 INF: Y Motor: Moving to 73.1926 mm, started at 72.3501 mm, delta = 0.8425 mm
17-03-17 22:30:59.928 -07 000000431 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:30:59.938 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 22:30:59.938 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:31:00.058 -07 000000012 INF: FPGA: Recv YRDPOS 148173
17-03-17 22:31:00.068 -07 000000627 INF: FPGA: Xmit ZDACW 37941\n [Z Motor]
17-03-17 22:31:00.068 -07 000000462 INF: FPGA: 'YRDPOS' command took 121 ms to send, 0 ms to get response, and 132 ms overall
17-03-17 22:31:00.068 -07 000000462 INF: Y Motor: Encoder = 148173 = motor step 115760.2 = 72.3501 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:31:00.068 -07 000000462 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:31:00.068 -07 000000462 INF: Y Motor: Moving 1348 steps-27
17-03-17 22:31:00.068 -07 000000480 INF: FPGA: Recv ZDACW
17-03-17 22:31:00.078 -07 000000627 INF: FPGA: 'ZDACW 37941' command took 0 ms to send, 0 ms to get response, and 143 ms overall
17-03-17 22:31:00.078 -07 000000626 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:31:00.088 -07 000000462 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:31:00.098 -07 000000627 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:31:00.098 -07 000000480 INF: FPGA: Recv ZDACR 37941
17-03-17 22:31:00.108 -07 000000627 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-17 22:31:00.108 -07 000000627 INF: Z Motor: MoveAbsStepped took 173 ms (did NOT wait for settling yet))
17-03-17 22:31:00.118 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) end. Duration was 389 ms.
17-03-17 22:31:00.118 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 22:31:00.118 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:31:00.118 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 387 ms.
17-03-17 22:31:00.118 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 22:31:00.118 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:31:00.128 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:31:00.128 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 22:31:00.128 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 22:31:00.128 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 22:31:00.278 -07 000000458 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:31:00.278 -07 000000626 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-17 22:31:00.458 -07 000000626 INF: FPGA: Recv YMVTILE
17-03-17 22:31:00.458 -07 000000462 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 22:31:00.498 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:31:00.508 -07 000000627 INF: FPGA: Recv YRDPOS 149865
17-03-17 22:31:00.518 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:31:00.518 -07 000000462 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:31:00.518 -07 000000462 INF: Y Motor: Position error before settling (table move) = -33 encoder counts (-0.016 mm)
17-03-17 22:31:00.518 -07 000000462 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.843 mm, average velocity = 2.117 mm/sec
17-03-17 22:31:01.468 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:31:01.468 -07 000000431 INF: FPGA: Recv YRDPOS 149865
17-03-17 22:31:01.478 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:31:01.478 -07 000000462 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:31:01.498 -07 000000462 INF: Y Motor: After move to 73.192604, error = -0.016335, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:31:01.498 -07 000000462 INF: Y Motor: Position error after settling (table move) = -33 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:31:01.498 -07 000000462 INF: Y Motor: Moved to 73.1763 after 1569 ms (table move)
17-03-17 22:31:01.498 -07 000000561 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173683 mm (DAC = 37941)
17-03-17 22:31:01.498 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:01.508 -07 000000424 INF: FPGA: Recv ZSGSRD 36331
17-03-17 22:31:01.508 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-17 22:31:01.508 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:01.508 -07 000000462 INF: FPGA: Recv ZSGSRD 36330
17-03-17 22:31:01.518 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:31:01.518 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:01.518 -07 000000012 INF: FPGA: Recv ZSGSRD 36330
17-03-17 22:31:01.528 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:01.528 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:01.528 -07 000000458 INF: FPGA: Recv ZSGSRD 36329
17-03-17 22:31:01.538 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:01.538 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:01.538 -07 000000424 INF: FPGA: Recv ZSGSRD 36326
17-03-17 22:31:01.548 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:01.548 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:01.548 -07 000000458 INF: FPGA: Recv ZSGSRD 36330
17-03-17 22:31:01.558 -07 000000561 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:01.558 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:01.558 -07 000000431 INF: FPGA: Recv ZSGSRD 36329
17-03-17 22:31:01.568 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:01.568 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:01.568 -07 000000424 INF: FPGA: Recv ZSGSRD 36321
17-03-17 22:31:01.578 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:01.578 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:01.578 -07 000000458 INF: FPGA: Recv ZSGSRD 36324
17-03-17 22:31:01.588 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:01.588 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:01.588 -07 000000626 INF: FPGA: Recv ZSGSRD 36325
17-03-17 22:31:01.598 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:01.598 -07 000000561 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:31:01.598 -07 000000431 INF: FPGA: Recv ZPIEZORD 32594
17-03-17 22:31:01.608 -07 000000561 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:01.608 -07 000000561 INF: Z Motor: Piezo is near 49.6 V (nominally 0 to 100 V), expect near 57.9 V, since DAC is at 5.789 V. Piezo Error = -8.3 V.
17-03-17 22:31:01.608 -07 000000561 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.7 um, Read 10 ADC samples: Avg = 36328 (-172.8 uncal um), Error = 0.9 uncal um, Median = 36329 (-172.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 36321 (-172.8 uncal um), Max = 36331 (-172.8 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 22:31:01.608 -07 000000561 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36328, posNoise = 3, negNoise = 7
17-03-17 22:31:01.608 -07 000000561 INF: Z Motor: After move to -0.173683, error = -0.000019, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:31:01.608 -07 000000561 INF: Z Motor: Settle wait time = 1572 ms, measure time = 102 ms (allowed 150 ms), total time = 1674 ms
17-03-17 22:31:01.608 -07 000000561 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 22:31:01.658 -07 000000561 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1725 ms
17-03-17 22:31:01.658 -07 000000561 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:31:01.658 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:31:01.658 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:31:01.658 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:31:01.658 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:31:01.658 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:31:01.658 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:31:01.658 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:31:01.658 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:31:01.668 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-17 22:31:01.668 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:31:01.668 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 22:31:01.668 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-17 22:31:01.678 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:31:01.718 -07 000000431 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:31:01.918 -07 000000627 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:31:01.918 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:31:01.918 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:31:01.918 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 22:31:01.958 -07 000000012 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:31:01.958 -07 000000626 INF: FPGA: Recv CAMSNAP
17-03-17 22:31:01.958 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 284 ms overall
17-03-17 22:31:01.978 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:31:02.038 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 22:31:02.038 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:31:02.038 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:31:02.038 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 22:31:02.038 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 63. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1016, R2=1046, Total=2062. Warn if over 250 bubbles per interval.
17-03-17 22:31:02.058 -07 000000012 INF: Autofocus start
17-03-17 22:31:02.058 -07 000000012 INF: MeasureProfile start
17-03-17 22:31:02.058 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:31:02.058 -07 000000627 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:31:02.068 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:31:02.068 -07 000000561 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:31:02.068 -07 000000012 INF: MeasureProfile done
17-03-17 22:31:02.068 -07 000000012 INF: X=0  Z correction [um]=-0.0713522
17-03-17 22:31:02.068 -07 000000012 INF: Autofocus finished
17-03-17 22:31:02.268 -07 000000458 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:31:02.268 -07 000000561 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:31:02.268 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.17626953125, Z-position -0.173702130697027. ----------
17-03-17 22:31:02.268 -07 000000610 INF: Cycle	64	Tile	17	Exposure Settings		A	454	G	218	T	218	C	454
17-03-17 22:31:02.278 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36438, sync = True, waitForSettling = True)
17-03-17 22:31:02.278 -07 000000610 INF: Z Motor: Moving to -0.166802 mm, started at -0.173702 mm, distance = 6.90 um
17-03-17 22:31:02.278 -07 000000610 INF: FPGA: Xmit ZDACW 36438\n [Z Motor]
17-03-17 22:31:02.278 -07 000000424 INF: FPGA: Recv ZDACW
17-03-17 22:31:02.288 -07 000000610 INF: FPGA: 'ZDACW 36438' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:31:02.288 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:31:02.288 -07 000000627 INF: FPGA: Recv ZDACR 36438
17-03-17 22:31:02.298 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:02.298 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:31:02.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:02.448 -07 000000012 INF: FPGA: Recv ZSGSRD 35257
17-03-17 22:31:02.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:31:02.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:02.458 -07 000000561 INF: FPGA: Recv ZSGSRD 35260
17-03-17 22:31:02.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:02.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:02.468 -07 000000424 INF: FPGA: Recv ZSGSRD 35249
17-03-17 22:31:02.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:02.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:02.478 -07 000000486 INF: FPGA: Recv ZSGSRD 35253
17-03-17 22:31:02.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:02.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:02.488 -07 000000626 INF: FPGA: Recv ZSGSRD 35261
17-03-17 22:31:02.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:02.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:02.498 -07 000000551 INF: FPGA: Recv ZSGSRD 35261
17-03-17 22:31:02.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:02.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:02.508 -07 000000424 INF: FPGA: Recv ZSGSRD 35257
17-03-17 22:31:02.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:02.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:02.518 -07 000000480 INF: FPGA: Recv ZSGSRD 35252
17-03-17 22:31:02.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:02.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:02.528 -07 000000618 INF: FPGA: Recv ZSGSRD 35255
17-03-17 22:31:02.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:02.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:02.538 -07 000000561 INF: FPGA: Recv ZSGSRD 35257
17-03-17 22:31:02.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:02.548 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:31:02.548 -07 000000576 INF: FPGA: Recv ZPIEZORD 31176
17-03-17 22:31:02.558 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:02.558 -07 000000610 INF: Z Motor: Piezo is near 46.6 V (nominally 0 to 100 V), expect near 55.6 V, since DAC is at 5.560 V. Piezo Error = -9.0 V.
17-03-17 22:31:02.558 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.8 um, Read 10 ADC samples: Avg = 35256 (-165.9 uncal um), Error = 0.9 uncal um, Median = 35257 (-166.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35249 (-165.9 uncal um), Max = 35261 (-166.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 22:31:02.558 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35256, posNoise = 5, negNoise = 7
17-03-17 22:31:02.558 -07 000000610 INF: Z Motor: After move to -0.166802, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:31:02.558 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 22:31:02.558 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:31:02.558 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:31:02.558 -07 000000429 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:31:02.558 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:31:02.558 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:31:02.558 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:31:02.558 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:31:02.558 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:31:02.558 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 22:31:02.558 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:31:02.558 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 22:31:02.558 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:31:02.568 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:31:02.568 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:31:02.568 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:31:02.568 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:31:02.578 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 22:31:02.578 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 22:31:02.578 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 22:31:02.578 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 22:31:02.578 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 454 454 218 218 36614 150\n [Camera]
17-03-17 22:31:02.778 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:31:03.228 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 646
17-03-17 22:31:03.228 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 646
17-03-17 22:31:03.228 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:31:03.228 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 646
17-03-17 22:31:03.228 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 646
17-03-17 22:31:03.238 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:31:03.238 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:31:03.238 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 22:31:03.238 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:31:03.238 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 22:31:03.418 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36614 839
17-03-17 22:31:03.568 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning grn on 989
17-03-17 22:31:03.628 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 391 ms.
17-03-17 22:31:03.628 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 22:31:03.628 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:31:03.628 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 390 ms.
17-03-17 22:31:03.628 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 22:31:03.628 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:31:03.638 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 64, FrontChillerTemperature: 4.011254,
17-03-17 22:31:03.638 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 22:31:03.638 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 22:31:03.638 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 22:31:03.648 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-17 22:31:03.798 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1207
17-03-17 22:31:03.798 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1207
17-03-17 22:31:03.798 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:31:03.798 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1207
17-03-17 22:31:03.798 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1207
17-03-17 22:31:03.798 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:31:03.798 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:31:03.798 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-17 22:31:03.808 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:31:03.808 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-17 22:31:03.978 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP 1400
17-03-17 22:31:03.978 -07 000000476 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:31:03.978 -07 000000610 INF: FPGA: 'CAMDBLSNAP 454 454 218 218 36614 150' command took 2 ms to send, 1399 ms to get response, and 1407 ms overall
17-03-17 22:31:03.988 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 22:31:03.988 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.17626953125, Z-Position -0.166815375281059. ------
17-03-17 22:31:03.988 -07 000000486 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:31:03.988 -07 000000429 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.17318 mm
17-03-17 22:31:03.988 -07 000000429 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:31:04.108 -07 000000448 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-17 22:31:04.108 -07 000000448 INF: Y Motor: Moving to 74.0226 mm, started at 73.1763 mm, delta = 0.8463 mm
17-03-17 22:31:04.108 -07 000000551 INF: Z Motor: Entering MoveAbsStepped (DAC = 37831, sync = True, waitForSettling = False)
17-03-17 22:31:04.108 -07 000000551 INF: Z Motor: Moving to -0.173179 mm, started at -0.166815 mm, distance = -6.36 um
17-03-17 22:31:04.108 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:31:04.108 -07 000000486 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 119 ms overall
17-03-17 22:31:04.118 -07 000000486 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:31:04.128 -07 000000448 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:31:04.128 -07 000000561 INF: FPGA: Recv YRDPOS 149865
17-03-17 22:31:04.138 -07 000000551 INF: FPGA: Xmit ZDACW 37831\n [Z Motor]
17-03-17 22:31:04.138 -07 000000448 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 22:31:04.138 -07 000000448 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:31:04.138 -07 000000448 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:31:04.138 -07 000000448 INF: Y Motor: Moving 1354 steps-33
17-03-17 22:31:04.138 -07 000000576 INF: FPGA: Recv ZDACW
17-03-17 22:31:04.148 -07 000000551 INF: FPGA: 'ZDACW 37831' command took 0 ms to send, 0 ms to get response, and 36 ms overall
17-03-17 22:31:04.158 -07 000000448 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:31:04.168 -07 000000551 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:31:04.168 -07 000000476 INF: FPGA: Recv ZDACR 37831
17-03-17 22:31:04.178 -07 000000551 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:31:04.178 -07 000000551 INF: Z Motor: MoveAbsStepped took 66 ms (did NOT wait for settling yet))
17-03-17 22:31:04.188 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 381 ms.
17-03-17 22:31:04.188 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-17 22:31:04.188 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:31:04.188 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 387 ms.
17-03-17 22:31:04.188 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 22:31:04.188 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:31:04.198 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:31:04.198 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:31:04.198 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 22:31:04.198 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 22:31:04.318 -07 000000627 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:31:04.318 -07 000000486 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 208 ms overall
17-03-17 22:31:04.528 -07 000000458 INF: FPGA: Recv YMVTILE
17-03-17 22:31:04.528 -07 000000448 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 22:31:04.568 -07 000000448 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:31:04.568 -07 000000627 INF: FPGA: Recv YRDPOS 151569
17-03-17 22:31:04.578 -07 000000448 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:04.578 -07 000000448 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:31:04.578 -07 000000448 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-17 22:31:04.578 -07 000000448 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.846 mm, average velocity = 2.132 mm/sec
17-03-17 22:31:05.528 -07 000000448 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:31:05.528 -07 000000561 INF: FPGA: Recv YRDPOS 151569
17-03-17 22:31:05.538 -07 000000448 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:31:05.538 -07 000000448 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:31:05.548 -07 000000448 INF: Y Motor: After move to 74.022606, error = -0.014305, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:31:05.548 -07 000000448 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:31:05.548 -07 000000448 INF: Y Motor: Moved to 74.0083 after 1445 ms (table move)
17-03-17 22:31:05.558 -07 000000429 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173179 mm (DAC = 37831)
17-03-17 22:31:05.558 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:05.558 -07 000000576 INF: FPGA: Recv ZSGSRD 36254
17-03-17 22:31:05.568 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:31:05.568 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:05.568 -07 000000618 INF: FPGA: Recv ZSGSRD 36244
17-03-17 22:31:05.578 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:05.578 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:05.578 -07 000000561 INF: FPGA: Recv ZSGSRD 36250
17-03-17 22:31:05.588 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:05.588 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:05.588 -07 000000431 INF: FPGA: Recv ZSGSRD 36251
17-03-17 22:31:05.598 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:05.598 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:05.598 -07 000000618 INF: FPGA: Recv ZSGSRD 36248
17-03-17 22:31:05.608 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:05.608 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:05.608 -07 000000476 INF: FPGA: Recv ZSGSRD 36255
17-03-17 22:31:05.618 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:05.618 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:05.618 -07 000000486 INF: FPGA: Recv ZSGSRD 36238
17-03-17 22:31:05.628 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:05.628 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:05.628 -07 000000627 INF: FPGA: Recv ZSGSRD 36252
17-03-17 22:31:05.638 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:05.638 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:05.638 -07 000000431 INF: FPGA: Recv ZSGSRD 36243
17-03-17 22:31:05.648 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:05.648 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:05.648 -07 000000627 INF: FPGA: Recv ZSGSRD 36248
17-03-17 22:31:05.658 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:05.658 -07 000000429 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:31:05.658 -07 000000576 INF: FPGA: Recv ZPIEZORD 32485
17-03-17 22:31:05.668 -07 000000429 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:05.668 -07 000000429 INF: Z Motor: Piezo is near 49.4 V (nominally 0 to 100 V), expect near 57.7 V, since DAC is at 5.773 V. Piezo Error = -8.3 V.
17-03-17 22:31:05.668 -07 000000429 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.2 um, Read 10 ADC samples: Avg = 36248 (-172.3 uncal um), Error = 0.9 uncal um, Median = 36249 (-172.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 36238 (-172.2 uncal um), Max = 36255 (-172.4 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-17 22:31:05.668 -07 000000429 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36248, posNoise = 7, negNoise = 10
17-03-17 22:31:05.668 -07 000000429 INF: Z Motor: After move to -0.173179, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:31:05.668 -07 000000429 INF: Z Motor: Settle wait time = 1448 ms, measure time = 109 ms (allowed 150 ms), total time = 1557 ms
17-03-17 22:31:05.668 -07 000000429 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-17 22:31:05.718 -07 000000429 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1725 ms
17-03-17 22:31:05.718 -07 000000429 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:31:05.718 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:31:05.718 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:31:05.718 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:31:05.718 -07 000000476 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:31:05.718 -07 000000486 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:31:05.718 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:31:05.718 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:31:05.718 -07 000000486 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:31:05.718 -07 000000486 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:31:05.728 -07 000000486 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:31:05.738 -07 000000486 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 22:31:05.738 -07 000000486 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-17 22:31:05.738 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:31:05.778 -07 000000431 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:31:05.978 -07 000000429 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:31:05.978 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:31:05.978 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:31:05.978 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 22:31:06.018 -07 000000012 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:31:06.018 -07 000000476 INF: FPGA: Recv CAMSNAP
17-03-17 22:31:06.018 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 285 ms overall
17-03-17 22:31:06.108 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 121 ms.
17-03-17 22:31:06.108 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:31:06.108 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 22:31:06.108 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 124 ms.
17-03-17 22:31:06.118 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:31:06.118 -07 000000429 INF: Autofocus start
17-03-17 22:31:06.118 -07 000000429 INF: MeasureProfile start
17-03-17 22:31:06.118 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:31:06.128 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 22:31:06.128 -07 000000431 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:31:06.138 -07 000000429 INF: MeasureProfile done
17-03-17 22:31:06.138 -07 000000429 INF: X=32  Z correction [um]=0.09220707
17-03-17 22:31:06.138 -07 000000429 INF: Autofocus finished
17-03-17 22:31:06.328 -07 000000486 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:31:06.328 -07 000000431 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:31:06.328 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.00830078125, Z-position -0.173188193725686. ----------
17-03-17 22:31:06.328 -07 000000610 INF: Cycle	64	Tile	18	Exposure Settings		A	454	G	218	T	218	C	454
17-03-17 22:31:06.338 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36364, sync = True, waitForSettling = True)
17-03-17 22:31:06.338 -07 000000610 INF: Z Motor: Moving to -0.166464 mm, started at -0.173188 mm, distance = 6.72 um
17-03-17 22:31:06.338 -07 000000610 INF: FPGA: Xmit ZDACW 36364\n [Z Motor]
17-03-17 22:31:06.338 -07 000000561 INF: FPGA: Recv ZDACW
17-03-17 22:31:06.348 -07 000000610 INF: FPGA: 'ZDACW 36364' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:31:06.348 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:31:06.348 -07 000000431 INF: FPGA: Recv ZDACR 36364
17-03-17 22:31:06.358 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:06.358 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:31:06.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:06.508 -07 000000486 INF: FPGA: Recv ZSGSRD 35201
17-03-17 22:31:06.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:31:06.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:06.518 -07 000000627 INF: FPGA: Recv ZSGSRD 35205
17-03-17 22:31:06.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:06.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:06.528 -07 000000476 INF: FPGA: Recv ZSGSRD 35202
17-03-17 22:31:06.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:06.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:06.538 -07 000000561 INF: FPGA: Recv ZSGSRD 35201
17-03-17 22:31:06.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:06.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:06.548 -07 000000486 INF: FPGA: Recv ZSGSRD 35199
17-03-17 22:31:06.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:06.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:06.558 -07 000000627 INF: FPGA: Recv ZSGSRD 35209
17-03-17 22:31:06.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:06.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:06.568 -07 000000424 INF: FPGA: Recv ZSGSRD 35202
17-03-17 22:31:06.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:06.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:06.578 -07 000000431 INF: FPGA: Recv ZSGSRD 35196
17-03-17 22:31:06.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:06.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:06.588 -07 000000627 INF: FPGA: Recv ZSGSRD 35205
17-03-17 22:31:06.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:06.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:06.598 -07 000000476 INF: FPGA: Recv ZSGSRD 35202
17-03-17 22:31:06.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:06.608 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:31:06.608 -07 000000627 INF: FPGA: Recv ZPIEZORD 31124
17-03-17 22:31:06.618 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:06.618 -07 000000610 INF: Z Motor: Piezo is near 46.5 V (nominally 0 to 100 V), expect near 55.5 V, since DAC is at 5.549 V. Piezo Error = -9.0 V.
17-03-17 22:31:06.618 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.5 um, Read 10 ADC samples: Avg = 35202 (-165.6 uncal um), Error = 0.9 uncal um, Median = 35202 (-165.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35196 (-165.6 uncal um), Max = 35209 (-165.6 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 22:31:06.618 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35202, posNoise = 7, negNoise = 6
17-03-17 22:31:06.618 -07 000000610 INF: Z Motor: After move to -0.166464, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:31:06.618 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 22:31:06.618 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:31:06.618 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:31:06.618 -07 000000431 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:31:06.618 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:31:06.618 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:31:06.618 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:31:06.618 -07 000000476 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:31:06.618 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:31:06.618 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 22:31:06.618 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:31:06.618 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:31:06.618 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:31:06.628 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:31:06.628 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:31:06.628 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:31:06.628 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:31:06.638 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 22:31:06.638 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 22:31:06.638 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 22:31:06.638 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 22:31:06.638 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 454 454 218 218 36541 150\n [Camera]
17-03-17 22:31:06.838 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:31:06.978 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:31:06.978 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 63. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1016, R2=1046, Total=2062. Warn if over 250 bubbles per interval.
17-03-17 22:31:07.298 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 646
17-03-17 22:31:07.298 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 646
17-03-17 22:31:07.298 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:31:07.298 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 646
17-03-17 22:31:07.298 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 646
17-03-17 22:31:07.298 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:31:07.298 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:31:07.298 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 22:31:07.298 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:31:07.308 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 22:31:07.488 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36541 839
17-03-17 22:31:07.638 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning grn on 989
17-03-17 22:31:07.668 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 368 ms.
17-03-17 22:31:07.668 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 369 ms.
17-03-17 22:31:07.668 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:31:07.678 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 373 ms.
17-03-17 22:31:07.678 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-17 22:31:07.678 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:31:07.678 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 22:31:07.678 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:31:07.678 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 22:31:07.688 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 22:31:07.858 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1207
17-03-17 22:31:07.858 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1207
17-03-17 22:31:07.858 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:31:07.858 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:31:07.858 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 22:31:07.858 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1207
17-03-17 22:31:07.858 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1207
17-03-17 22:31:07.858 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:31:07.858 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:31:07.858 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 1458343128, 0x0, 418435064) start.
17-03-17 22:31:08.048 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP 1400
17-03-17 22:31:08.048 -07 000000561 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:31:08.048 -07 000000610 INF: FPGA: 'CAMDBLSNAP 454 454 218 218 36541 150' command took 2 ms to send, 1403 ms to get response, and 1408 ms overall
17-03-17 22:31:08.048 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 22:31:08.048 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.00830078125, Z-Position -0.166468467825404. ------
17-03-17 22:31:08.048 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:31:08.048 -07 000000012 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.17287 mm
17-03-17 22:31:08.048 -07 000000012 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:31:08.058 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 37764, sync = True, waitForSettling = False)
17-03-17 22:31:08.058 -07 000000431 INF: Z Motor: Moving to -0.172873 mm, started at -0.166468 mm, distance = -6.40 um
17-03-17 22:31:08.058 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:31:08.058 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 4 ms to get response, and 6 ms overall
17-03-17 22:31:08.058 -07 000000431 INF: FPGA: Xmit ZDACW 37764\n [Z Motor]
17-03-17 22:31:08.058 -07 000000627 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-17 22:31:08.058 -07 000000627 INF: Y Motor: Moving to 74.8526 mm, started at 74.0083 mm, delta = 0.8443 mm
17-03-17 22:31:08.058 -07 000000458 INF: FPGA: Recv ZDACW
17-03-17 22:31:08.068 -07 000000431 INF: FPGA: 'ZDACW 37764' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:31:08.068 -07 000000424 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:31:08.078 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:31:08.078 -07 000000462 INF: FPGA: Recv YRDPOS 151569
17-03-17 22:31:08.088 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:31:08.088 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-17 22:31:08.088 -07 000000627 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:31:08.088 -07 000000627 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:31:08.088 -07 000000627 INF: Y Motor: Moving 1351 steps-29
17-03-17 22:31:08.088 -07 000000618 INF: FPGA: Recv ZDACR 37764
17-03-17 22:31:08.098 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:31:08.098 -07 000000627 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:31:08.098 -07 000000431 INF: Z Motor: MoveAbsStepped took 38 ms (did NOT wait for settling yet))
17-03-17 22:31:08.258 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 397 ms.
17-03-17 22:31:08.258 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 22:31:08.258 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:31:08.258 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 1458343128, 0x0, 418435064) end. Duration was 394 ms.
17-03-17 22:31:08.258 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 22:31:08.258 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:31:08.258 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:31:08.258 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 22:31:08.258 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 22:31:08.268 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-17 22:31:08.268 -07 000000462 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:31:08.268 -07 000000424 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 208 ms overall
17-03-17 22:31:08.468 -07 000000458 INF: FPGA: Recv YMVTILE
17-03-17 22:31:08.468 -07 000000627 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-17 22:31:08.498 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:31:08.498 -07 000000561 INF: FPGA: Recv YRDPOS 153256
17-03-17 22:31:08.508 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:31:08.508 -07 000000627 INF: Y Motor: Encoder = 153256 = motor step 119731.3 = 74.8320 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:31:08.508 -07 000000627 INF: Y Motor: Position error before settling (table move) = -42 encoder counts (-0.021 mm)
17-03-17 22:31:08.508 -07 000000627 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.844 mm, average velocity = 2.182 mm/sec
17-03-17 22:31:08.998 -07 000000458 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 64, FrontChillerTemperature: 3.974486,
17-03-17 22:31:09.458 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:31:09.458 -07 000000551 INF: FPGA: Recv YRDPOS 153256
17-03-17 22:31:09.468 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:09.468 -07 000000627 INF: Y Motor: Encoder = 153256 = motor step 119731.3 = 74.8320 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:31:09.478 -07 000000627 INF: Y Motor: After move to 74.852608, error = -0.020576, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:31:09.478 -07 000000627 INF: Y Motor: Position error after settling (table move) = -42 encoder counts (-0.021 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:31:09.478 -07 000000627 INF: Y Motor: Moved to 74.8320 after 1423 ms (table move)
17-03-17 22:31:09.488 -07 000000012 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172873 mm (DAC = 37764)
17-03-17 22:31:09.488 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:09.488 -07 000000561 INF: FPGA: Recv ZSGSRD 36211
17-03-17 22:31:09.498 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:31:09.498 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:09.498 -07 000000576 INF: FPGA: Recv ZSGSRD 36196
17-03-17 22:31:09.508 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:09.508 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:09.508 -07 000000561 INF: FPGA: Recv ZSGSRD 36192
17-03-17 22:31:09.518 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:09.538 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:09.538 -07 000000627 INF: FPGA: Recv ZSGSRD 36200
17-03-17 22:31:09.548 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:31:09.548 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:09.548 -07 000000424 INF: FPGA: Recv ZSGSRD 36203
17-03-17 22:31:09.558 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:09.568 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:09.568 -07 000000618 INF: FPGA: Recv ZSGSRD 36209
17-03-17 22:31:09.578 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:31:09.598 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:09.598 -07 000000576 INF: FPGA: Recv ZSGSRD 36197
17-03-17 22:31:09.608 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:31:09.608 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:09.608 -07 000000618 INF: FPGA: Recv ZSGSRD 36205
17-03-17 22:31:09.618 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:09.618 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:09.618 -07 000000576 INF: FPGA: Recv ZSGSRD 36202
17-03-17 22:31:09.628 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:09.628 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:09.628 -07 000000618 INF: FPGA: Recv ZSGSRD 36199
17-03-17 22:31:09.638 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:09.638 -07 000000012 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:31:09.638 -07 000000551 INF: FPGA: Recv ZPIEZORD 32439
17-03-17 22:31:09.648 -07 000000012 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:09.648 -07 000000012 INF: Z Motor: Piezo is near 49.3 V (nominally 0 to 100 V), expect near 57.6 V, since DAC is at 5.762 V. Piezo Error = -8.3 V.
17-03-17 22:31:09.648 -07 000000012 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.9 um, Read 10 ADC samples: Avg = 36201 (-172.0 uncal um), Error = 0.9 uncal um, Median = 36201 (-172.0 uncal um), StdDev = 6 (0.0 uncal um), Range = 19 (0.1 uncal um), Min = 36192 (-171.9 uncal um), Max = 36211 (-172.1 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 22:31:09.648 -07 000000012 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36201, posNoise = 10, negNoise = 9
17-03-17 22:31:09.648 -07 000000012 INF: Z Motor: After move to -0.172873, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:31:09.648 -07 000000012 INF: Z Motor: Settle wait time = 1430 ms, measure time = 159 ms (allowed 150 ms), total time = 1589 ms
17-03-17 22:31:09.648 -07 000000012 INF: Z Motor: Warning: Actual position measuring time = 159 ms, longer than max expected time of 150 ms
17-03-17 22:31:09.648 -07 000000012 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1592 ms
17-03-17 22:31:09.648 -07 000000012 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:31:09.648 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:31:09.648 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:31:09.648 -07 000000429 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:31:09.648 -07 000000458 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:31:09.648 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:31:09.648 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:31:09.658 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:31:09.658 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:31:09.658 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:31:09.658 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:31:09.668 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 22:31:09.668 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 22:31:09.668 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:31:09.708 -07 000000618 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:31:09.908 -07 000000462 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:31:09.908 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:31:09.908 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:31:09.908 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 594000200, 0x0, 559484976) start.
17-03-17 22:31:09.948 -07 000000429 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:31:09.948 -07 000000561 INF: FPGA: Recv CAMSNAP
17-03-17 22:31:09.948 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 285 ms overall
17-03-17 22:31:10.028 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 594000200, 0x0, 559484976) end. Duration was 119 ms.
17-03-17 22:31:10.028 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:31:10.038 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:31:10.038 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 122 ms.
17-03-17 22:31:10.048 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:31:10.048 -07 000000429 INF: Autofocus start
17-03-17 22:31:10.048 -07 000000429 INF: MeasureProfile start
17-03-17 22:31:10.048 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:31:10.058 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:31:10.058 -07 000000424 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:31:10.058 -07 000000429 INF: MeasureProfile done
17-03-17 22:31:10.058 -07 000000429 INF: X=16  Z correction [um]=0.01042744
17-03-17 22:31:10.058 -07 000000429 INF: Autofocus finished
17-03-17 22:31:10.258 -07 000000476 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:31:10.258 -07 000000424 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:31:10.258 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83203125, Z-position -0.172886255755023. ----------
17-03-17 22:31:10.268 -07 000000610 INF: Cycle	64	Tile	19	Exposure Settings		A	454	G	218	T	218	C	454
17-03-17 22:31:10.268 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36279, sync = True, waitForSettling = True)
17-03-17 22:31:10.268 -07 000000610 INF: Z Motor: Moving to -0.166075 mm, started at -0.172886 mm, distance = 6.81 um
17-03-17 22:31:10.268 -07 000000610 INF: FPGA: Xmit ZDACW 36279\n [Z Motor]
17-03-17 22:31:10.268 -07 000000618 INF: FPGA: Recv ZDACW
17-03-17 22:31:10.278 -07 000000610 INF: FPGA: 'ZDACW 36279' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:31:10.278 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:31:10.278 -07 000000627 INF: FPGA: Recv ZDACR 36279
17-03-17 22:31:10.288 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:10.288 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:31:10.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:10.438 -07 000000618 INF: FPGA: Recv ZSGSRD 35143
17-03-17 22:31:10.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:31:10.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:10.448 -07 000000476 INF: FPGA: Recv ZSGSRD 35139
17-03-17 22:31:10.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:10.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:10.458 -07 000000618 INF: FPGA: Recv ZSGSRD 35143
17-03-17 22:31:10.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:10.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:10.468 -07 000000431 INF: FPGA: Recv ZSGSRD 35142
17-03-17 22:31:10.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:10.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:10.478 -07 000000462 INF: FPGA: Recv ZSGSRD 35135
17-03-17 22:31:10.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:10.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:10.488 -07 000000486 INF: FPGA: Recv ZSGSRD 35150
17-03-17 22:31:10.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:10.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:10.498 -07 000000424 INF: FPGA: Recv ZSGSRD 35140
17-03-17 22:31:10.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:10.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:10.508 -07 000000476 INF: FPGA: Recv ZSGSRD 35143
17-03-17 22:31:10.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:10.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:10.518 -07 000000551 INF: FPGA: Recv ZSGSRD 35145
17-03-17 22:31:10.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:10.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:10.528 -07 000000627 INF: FPGA: Recv ZSGSRD 35141
17-03-17 22:31:10.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:10.538 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:31:10.538 -07 000000551 INF: FPGA: Recv ZPIEZORD 31048
17-03-17 22:31:10.548 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:10.548 -07 000000610 INF: Z Motor: Piezo is near 46.3 V (nominally 0 to 100 V), expect near 55.4 V, since DAC is at 5.536 V. Piezo Error = -9.0 V.
17-03-17 22:31:10.548 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.1 um, Read 10 ADC samples: Avg = 35142 (-165.2 uncal um), Error = 0.9 uncal um, Median = 35142 (-165.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 35135 (-165.2 uncal um), Max = 35150 (-165.3 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 22:31:10.548 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35142, posNoise = 8, negNoise = 7
17-03-17 22:31:10.548 -07 000000610 INF: Z Motor: After move to -0.166075, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:31:10.548 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 22:31:10.548 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:31:10.548 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:31:10.548 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:31:10.548 -07 000000486 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:31:10.548 -07 000000627 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:31:10.548 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:31:10.548 -07 000000458 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:31:10.548 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:31:10.548 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:31:10.548 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:31:10.548 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:31:10.548 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:31:10.558 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 22:31:10.558 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:31:10.558 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:31:10.558 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:31:10.568 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 22:31:10.568 -07 000000627 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 22:31:10.568 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 22:31:10.568 -07 000000458 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 22:31:10.568 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 454 454 218 218 36456 150\n [Camera]
17-03-17 22:31:10.768 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:31:11.218 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 646
17-03-17 22:31:11.218 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 646
17-03-17 22:31:11.218 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:31:11.218 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:31:11.218 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1094749800, 0x0, 391868352) start.
17-03-17 22:31:11.218 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 646
17-03-17 22:31:11.228 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 646
17-03-17 22:31:11.228 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:31:11.228 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:31:11.228 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) start.
17-03-17 22:31:11.418 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36456 839
17-03-17 22:31:11.558 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP turning grn on 989
17-03-17 22:31:11.598 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1094749800, 0x0, 391868352) end. Duration was 379 ms.
17-03-17 22:31:11.598 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-17 22:31:11.598 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:31:11.598 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 22:31:11.598 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-17 22:31:11.598 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:31:11.608 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:31:11.608 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 22:31:11.608 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:31:11.618 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 22:31:11.778 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1207
17-03-17 22:31:11.778 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1207
17-03-17 22:31:11.778 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:31:11.778 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:31:11.778 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 1165594328, 0x0, 391868352) start.
17-03-17 22:31:11.788 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1207
17-03-17 22:31:11.788 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1207
17-03-17 22:31:11.788 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:31:11.788 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:31:11.788 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 22:31:11.968 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP 1400
17-03-17 22:31:11.978 -07 000000486 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:31:11.978 -07 000000610 INF: FPGA: 'CAMDBLSNAP 454 454 218 218 36456 150' command took 2 ms to send, 1400 ms to get response, and 1407 ms overall
17-03-17 22:31:11.978 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:31:11.978 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 63. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1016, R2=1046, Total=2062. Warn if over 250 bubbles per interval.
17-03-17 22:31:12.188 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 399 ms.
17-03-17 22:31:12.188 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 22:31:12.188 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:31:12.188 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 1165594328, 0x0, 391868352) end. Duration was 402 ms.
17-03-17 22:31:12.188 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 22:31:12.188 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:31:12.188 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:31:12.188 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 22:31:12.188 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-17 22:31:12.188 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-17 22:31:12.198 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-17 22:31:12.338 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 143 ms.
17-03-17 22:31:12.338 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-17 22:31:12.378 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 42 ms.
17-03-17 22:31:12.378 -07 000000610 INF: Move compensator for Bottom-surface imaging.
17-03-17 22:31:12.378 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-17 22:31:12.378 -07 000000462 INF: FPGA: Recv EMCUR 
17-03-17 22:31:12.388 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 22:31:12.388 -07 000000610 INF: FPGA: Xmit EMIN 20 40\n [Compensator]
17-03-17 22:31:12.888 -07 000000551 INF: FPGA: Recv EMIN
17-03-17 22:31:12.888 -07 000000610 INF: FPGA: 'EMIN 20 40' command took 0 ms to send, 492 ms to get response, and 502 ms overall
17-03-17 22:31:12.888 -07 000000610 INF: FPGA: Xmit EMCUR 60\n [Compensator]
17-03-17 22:31:12.888 -07 000000618 INF: FPGA: Recv EMCUR 
17-03-17 22:31:12.898 -07 000000610 INF: FPGA: 'EMCUR 60' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:31:12.898 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 22:31:12.898 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 74.83203125, Z-Position -0.166083015096899. ------
17-03-17 22:31:12.898 -07 000000486 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:31:12.898 -07 000000424 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.14032 mm
17-03-17 22:31:12.898 -07 000000424 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:31:12.898 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:31:12.908 -07 000000486 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 22:31:12.908 -07 000000627 INF: Z Motor: Entering MoveAbsStepped (DAC = 30653, sync = True, waitForSettling = False)
17-03-17 22:31:12.908 -07 000000627 INF: Z Motor: Moving to -0.140320 mm, started at -0.166083 mm, distance = 25.76 um
17-03-17 22:31:12.908 -07 000000486 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:31:12.908 -07 000000458 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-17 22:31:12.908 -07 000000458 INF: Y Motor: Moving to 59.9126 mm, started at 74.8320 mm, delta = -14.9194 mm
17-03-17 22:31:12.918 -07 000000458 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:31:12.918 -07 000000012 INF: FPGA: Recv YRDPOS 153258
17-03-17 22:31:12.928 -07 000000458 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 22:31:12.928 -07 000000458 INF: Y Motor: Encoder = 153258 = motor step 119732.8 = 74.8330 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:31:12.928 -07 000000627 INF: FPGA: Xmit ZDACW 30653\n [Z Motor]
17-03-17 22:31:12.928 -07 000000618 INF: FPGA: Recv ZDACW
17-03-17 22:31:12.928 -07 000000458 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = -14.9400 mm (-23904.0 steps). UsingTableMove = False
17-03-17 22:31:12.928 -07 000000458 INF: Y Motor: Moving to 122701 encoder counts
17-03-17 22:31:12.938 -07 000000627 INF: FPGA: 'ZDACW 30653' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-17 22:31:12.938 -07 000000627 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:31:12.938 -07 000000576 INF: FPGA: Recv ZDACR 30653
17-03-17 22:31:12.948 -07 000000458 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-17 22:31:12.948 -07 000000627 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:12.948 -07 000000627 INF: Z Motor: MoveAbsStepped took 38 ms (did NOT wait for settling yet))
17-03-17 22:31:13.108 -07 000000627 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:31:13.108 -07 000000486 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 202 ms overall
17-03-17 22:31:14.358 -07 000000627 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 64, FrontChillerTemperature: 3.939015,
17-03-17 22:31:14.568 -07 000000012 INF: FPGA: Recv YMVTO 122703 23905
17-03-17 22:31:14.568 -07 000000458 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1618 ms to get response, and 1644 ms overall
17-03-17 22:31:14.568 -07 000000458 INF: Y Motor: Position error before settling = 2 encoder counts (0.001 mm)
17-03-17 22:31:14.568 -07 000000458 INF: Y Motor: To move from 74.833 to 59.913 (-14.919 mm) should take 23873 steps, but required 23905 steps (14.941 mm). Slippage = 0.020 mm (0.00%).
17-03-17 22:31:14.568 -07 000000458 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1645 ms, distance = 14.919 mm, average velocity = 9.070 mm/sec
17-03-17 22:31:16.978 -07 000000551 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:31:16.978 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 63. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1016, R2=1046, Total=2062. Warn if over 250 bubbles per interval.
17-03-17 22:31:17.418 -07 000000458 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:31:17.418 -07 000000551 INF: FPGA: Recv YRDPOS 122697
17-03-17 22:31:17.428 -07 000000458 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:31:17.428 -07 000000458 INF: Y Motor: Encoder = 122697 = motor step 95857.0 = 59.9106 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:31:17.458 -07 000000458 INF: Y Motor: After move to 59.912609, error = -0.001965, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:31:17.458 -07 000000458 INF: Y Motor: Position error after settling = -4 encoder counts (-0.002 mm), Delta during settling = -6 counts (-0.003 mm)
17-03-17 22:31:17.458 -07 000000458 INF: Y Motor: Moved to 59.9106 after 4549 ms
17-03-17 22:31:17.458 -07 000000424 INF: Z Motor: EndOfMoveAbsStepped: target = -0.140320 mm (DAC = 30653)
17-03-17 22:31:17.458 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:17.458 -07 000000462 INF: FPGA: Recv ZSGSRD 31130
17-03-17 22:31:17.468 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 22:31:17.468 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:17.468 -07 000000486 INF: FPGA: Recv ZSGSRD 31129
17-03-17 22:31:17.478 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:17.478 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:17.478 -07 000000551 INF: FPGA: Recv ZSGSRD 31133
17-03-17 22:31:17.488 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:17.488 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:17.488 -07 000000486 INF: FPGA: Recv ZSGSRD 31134
17-03-17 22:31:17.498 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:17.498 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:17.498 -07 000000551 INF: FPGA: Recv ZSGSRD 31128
17-03-17 22:31:17.508 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:17.508 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:17.508 -07 000000462 INF: FPGA: Recv ZSGSRD 31141
17-03-17 22:31:17.518 -07 000000424 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:17.518 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:17.518 -07 000000618 INF: FPGA: Recv ZSGSRD 31131
17-03-17 22:31:17.528 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:17.528 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:17.528 -07 000000576 INF: FPGA: Recv ZSGSRD 31135
17-03-17 22:31:17.538 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:17.538 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:17.538 -07 000000486 INF: FPGA: Recv ZSGSRD 31129
17-03-17 22:31:17.548 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:17.548 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:17.548 -07 000000462 INF: FPGA: Recv ZSGSRD 31137
17-03-17 22:31:17.558 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:17.558 -07 000000424 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:31:17.558 -07 000000576 INF: FPGA: Recv ZPIEZORD 26841
17-03-17 22:31:17.568 -07 000000424 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:17.568 -07 000000424 INF: Z Motor: Piezo is near 37.3 V (nominally 0 to 100 V), expect near 46.8 V, since DAC is at 4.677 V. Piezo Error = -9.4 V.
17-03-17 22:31:17.568 -07 000000424 INF: Z Motor: ReadAdcAverage: Commanded Z = -140.3 um, Read 10 ADC samples: Avg = 31133 (-139.5 uncal um), Error = 0.8 uncal um, Median = 31132 (-139.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 31128 (-139.5 uncal um), Max = 31141 (-139.6 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 22:31:17.568 -07 000000424 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31133, posNoise = 8, negNoise = 5
17-03-17 22:31:17.568 -07 000000424 INF: Z Motor: After move to -0.140320, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:31:17.568 -07 000000424 INF: Z Motor: Settle wait time = 4553 ms, measure time = 105 ms (allowed 150 ms), total time = 4658 ms
17-03-17 22:31:17.568 -07 000000424 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 22:31:17.618 -07 000000424 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4713 ms
17-03-17 22:31:17.618 -07 000000424 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:31:17.618 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:31:17.618 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:31:17.618 -07 000000458 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:31:17.618 -07 000000551 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:31:17.618 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:31:17.618 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:31:17.618 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:31:17.618 -07 000000618 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-17 22:31:17.648 -07 000000618 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 22 ms.
17-03-17 22:31:17.648 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:31:17.648 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:31:17.648 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:31:17.658 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 22:31:17.658 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 38 ms.
17-03-17 22:31:17.658 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:31:17.708 -07 000000551 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:31:17.908 -07 000000458 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:31:17.908 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:31:17.908 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:31:17.908 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 22:31:17.948 -07 000000462 INF: FPGA: Recv @CAMSNAP 283
17-03-17 22:31:17.948 -07 000000012 INF: FPGA: Recv CAMSNAP
17-03-17 22:31:17.948 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 285 ms to get response, and 288 ms overall
17-03-17 22:31:18.028 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 22:31:18.028 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:31:18.028 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 22:31:18.028 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-17 22:31:18.048 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:31:18.048 -07 000000627 INF: Image SNR check: start
17-03-17 22:31:18.048 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:31:18.058 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:31:18.058 -07 000000424 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:31:18.058 -07 000000627 INF: Image SNR check: pass  [peak (Max-Min)=57.52]
17-03-17 22:31:18.058 -07 000000627 INF: Autofocus start
17-03-17 22:31:18.058 -07 000000627 INF: MeasureProfile start
17-03-17 22:31:18.068 -07 000000627 INF: MeasureProfile done
17-03-17 22:31:18.068 -07 000000627 INF: X=0  Z correction [um]=-0.02394831
17-03-17 22:31:18.068 -07 000000627 INF: Autofocus finished
17-03-17 22:31:18.258 -07 000000618 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:31:18.258 -07 000000424 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-17 22:31:18.258 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.91064453125, Z-position -0.140328348620579. ----------
17-03-17 22:31:18.268 -07 000000610 INF: Cycle	64	Tile	1	Exposure Settings		A	454	G	218	T	218	C	454
17-03-17 22:31:18.268 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 29160, sync = True, waitForSettling = True)
17-03-17 22:31:18.268 -07 000000610 INF: Z Motor: Moving to -0.133486 mm, started at -0.140328 mm, distance = 6.84 um
17-03-17 22:31:18.268 -07 000000610 INF: FPGA: Xmit ZDACW 29160\n [Z Motor]
17-03-17 22:31:18.268 -07 000000462 INF: FPGA: Recv ZDACW
17-03-17 22:31:18.278 -07 000000610 INF: FPGA: 'ZDACW 29160' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 22:31:18.278 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:31:18.278 -07 000000424 INF: FPGA: Recv ZDACR 29160
17-03-17 22:31:18.288 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:18.288 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:31:18.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:18.438 -07 000000486 INF: FPGA: Recv ZSGSRD 30065
17-03-17 22:31:18.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:18.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:18.448 -07 000000551 INF: FPGA: Recv ZSGSRD 30063
17-03-17 22:31:18.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:18.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:18.458 -07 000000486 INF: FPGA: Recv ZSGSRD 30064
17-03-17 22:31:18.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:18.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:18.468 -07 000000551 INF: FPGA: Recv ZSGSRD 30072
17-03-17 22:31:18.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:18.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:18.478 -07 000000618 INF: FPGA: Recv ZSGSRD 30070
17-03-17 22:31:18.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:18.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:18.488 -07 000000462 INF: FPGA: Recv ZSGSRD 30071
17-03-17 22:31:18.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:18.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:18.498 -07 000000458 INF: FPGA: Recv ZSGSRD 30069
17-03-17 22:31:18.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:18.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:18.508 -07 000000627 INF: FPGA: Recv ZSGSRD 30068
17-03-17 22:31:18.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:18.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:18.518 -07 000000458 INF: FPGA: Recv ZSGSRD 30064
17-03-17 22:31:18.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:18.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:18.528 -07 000000627 INF: FPGA: Recv ZSGSRD 30072
17-03-17 22:31:18.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:18.538 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:31:18.538 -07 000000576 INF: FPGA: Recv ZPIEZORD 25677
17-03-17 22:31:18.548 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:18.548 -07 000000610 INF: Z Motor: Piezo is near 34.9 V (nominally 0 to 100 V), expect near 44.5 V, since DAC is at 4.450 V. Piezo Error = -9.6 V.
17-03-17 22:31:18.548 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.5 um, Read 10 ADC samples: Avg = 30068 (-132.7 uncal um), Error = 0.8 uncal um, Median = 30068 (-132.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 30063 (-132.7 uncal um), Max = 30072 (-132.7 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 22:31:18.548 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30068, posNoise = 4, negNoise = 5
17-03-17 22:31:18.548 -07 000000610 INF: Z Motor: After move to -0.133486, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:31:18.548 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-17 22:31:18.548 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:31:18.548 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:31:18.548 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:31:18.548 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:31:18.548 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:31:18.548 -07 000000458 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:31:18.548 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:31:18.548 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:31:18.548 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 22:31:18.548 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:31:18.548 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 22:31:18.548 -07 000000462 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-17 22:31:18.558 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:31:18.558 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:31:18.558 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 22:31:18.558 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 22:31:18.568 -07 000000462 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 20 ms.
17-03-17 22:31:18.568 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:31:18.578 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 22:31:18.578 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:31:18.588 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 22:31:18.588 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 34 ms.
17-03-17 22:31:18.588 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 454 454 218 218 29337 150\n [Camera]
17-03-17 22:31:18.788 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:31:19.238 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 646
17-03-17 22:31:19.238 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 646
17-03-17 22:31:19.238 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:31:19.238 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 646
17-03-17 22:31:19.238 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 646
17-03-17 22:31:19.248 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:31:19.248 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:31:19.248 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 22:31:19.248 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:31:19.248 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 1458343128, 0x0, 418435064) start.
17-03-17 22:31:19.428 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29337 839
17-03-17 22:31:19.578 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning grn on 989
17-03-17 22:31:19.618 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 374 ms.
17-03-17 22:31:19.618 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 1458343128, 0x0, 418435064) end. Duration was 367 ms.
17-03-17 22:31:19.618 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 374 ms.
17-03-17 22:31:19.618 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:31:19.618 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 368 ms.
17-03-17 22:31:19.618 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:31:19.628 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 22:31:19.628 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 22:31:19.628 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 22:31:19.628 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 22:31:19.718 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 64, FrontChillerTemperature: 3.951279,
17-03-17 22:31:19.798 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1207
17-03-17 22:31:19.798 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1207
17-03-17 22:31:19.798 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:31:19.798 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:31:19.798 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 22:31:19.808 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1207
17-03-17 22:31:19.808 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1207
17-03-17 22:31:19.808 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:31:19.918 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:31:19.918 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 22:31:19.988 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP 1399
17-03-17 22:31:19.988 -07 000000462 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:31:19.988 -07 000000610 INF: FPGA: 'CAMDBLSNAP 454 454 218 218 29337 150' command took 2 ms to send, 1399 ms to get response, and 1407 ms overall
17-03-17 22:31:19.998 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 22:31:19.998 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.91064453125, Z-Position -0.133486562689603. ------
17-03-17 22:31:19.998 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:31:19.998 -07 000000627 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.13991 mm
17-03-17 22:31:19.998 -07 000000627 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:31:19.998 -07 000000012 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-17 22:31:19.998 -07 000000012 INF: Y Motor: Moving to 60.7426 mm, started at 59.9106 mm, delta = 0.8320 mm
17-03-17 22:31:19.998 -07 000000462 INF: Z Motor: Entering MoveAbsStepped (DAC = 30564, sync = True, waitForSettling = False)
17-03-17 22:31:19.998 -07 000000462 INF: Z Motor: Moving to -0.139913 mm, started at -0.133487 mm, distance = -6.43 um
17-03-17 22:31:19.998 -07 000000458 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:31:20.008 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 22:31:20.008 -07 000000462 INF: FPGA: Xmit ZDACW 30564\n [Z Motor]
17-03-17 22:31:20.008 -07 000000486 INF: FPGA: Recv ZDACW
17-03-17 22:31:20.018 -07 000000462 INF: FPGA: 'ZDACW 30564' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 22:31:20.018 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:31:20.018 -07 000000486 INF: FPGA: Recv YRDPOS 122697
17-03-17 22:31:20.028 -07 000000576 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:31:20.028 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-17 22:31:20.028 -07 000000012 INF: Y Motor: Encoder = 122697 = motor step 95857.0 = 59.9106 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:31:20.028 -07 000000012 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:31:20.028 -07 000000012 INF: Y Motor: Moving 1331 steps2
17-03-17 22:31:20.038 -07 000000462 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:31:20.038 -07 000000618 INF: FPGA: Recv ZDACR 30564
17-03-17 22:31:20.048 -07 000000012 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:31:20.048 -07 000000462 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:31:20.048 -07 000000462 INF: Z Motor: MoveAbsStepped took 46 ms (did NOT wait for settling yet))
17-03-17 22:31:20.198 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 397 ms.
17-03-17 22:31:20.198 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 22:31:20.198 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:31:20.208 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 22:31:20.208 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 22:31:20.228 -07 000000462 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:31:20.228 -07 000000576 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 22:31:20.318 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 393 ms.
17-03-17 22:31:20.318 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 22:31:20.318 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:31:20.318 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 22:31:20.328 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 521 ms.
17-03-17 22:31:20.428 -07 000000551 INF: FPGA: Recv YMVTILE
17-03-17 22:31:20.428 -07 000000012 INF: FPGA: 'YMVTILE 1327' command took 3 ms to send, 371 ms to get response, and 400 ms overall
17-03-17 22:31:20.458 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:31:20.458 -07 000000448 INF: FPGA: Recv YRDPOS 124380
17-03-17 22:31:20.468 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:31:20.468 -07 000000012 INF: Y Motor: Encoder = 124380 = motor step 97171.9 = 60.7324 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:31:20.468 -07 000000012 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-17 22:31:20.468 -07 000000012 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 400 ms, distance = 0.832 mm, average velocity = 2.080 mm/sec
17-03-17 22:31:21.418 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:31:21.418 -07 000000551 INF: FPGA: Recv YRDPOS 124381
17-03-17 22:31:21.428 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:31:21.428 -07 000000012 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:31:21.448 -07 000000012 INF: Y Motor: After move to 60.742607, error = -0.009697, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:31:21.448 -07 000000012 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 22:31:21.448 -07 000000012 INF: Y Motor: Moved to 60.7329 after 1448 ms (table move)
17-03-17 22:31:21.448 -07 000000627 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139913 mm (DAC = 30564)
17-03-17 22:31:21.448 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:21.458 -07 000000458 INF: FPGA: Recv ZSGSRD 31068
17-03-17 22:31:21.458 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 22:31:21.458 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:21.458 -07 000000424 INF: FPGA: Recv ZSGSRD 31076
17-03-17 22:31:21.468 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:31:21.468 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:21.468 -07 000000448 INF: FPGA: Recv ZSGSRD 31066
17-03-17 22:31:21.478 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:21.478 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:21.478 -07 000000012 INF: FPGA: Recv ZSGSRD 31063
17-03-17 22:31:21.488 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:21.488 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:21.488 -07 000000448 INF: FPGA: Recv ZSGSRD 31062
17-03-17 22:31:21.498 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:21.498 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:21.498 -07 000000424 INF: FPGA: Recv ZSGSRD 31071
17-03-17 22:31:21.508 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:21.508 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:21.508 -07 000000448 INF: FPGA: Recv ZSGSRD 31078
17-03-17 22:31:21.518 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:21.518 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:21.518 -07 000000424 INF: FPGA: Recv ZSGSRD 31066
17-03-17 22:31:21.528 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:21.528 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:21.528 -07 000000626 INF: FPGA: Recv ZSGSRD 31068
17-03-17 22:31:21.538 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:21.538 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:21.538 -07 000000012 INF: FPGA: Recv ZSGSRD 31068
17-03-17 22:31:21.548 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:21.548 -07 000000627 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:31:21.548 -07 000000480 INF: FPGA: Recv ZPIEZORD 27004
17-03-17 22:31:21.558 -07 000000627 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:21.558 -07 000000627 INF: Z Motor: Piezo is near 37.7 V (nominally 0 to 100 V), expect near 46.6 V, since DAC is at 4.664 V. Piezo Error = -9.0 V.
17-03-17 22:31:21.558 -07 000000627 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.9 um, Read 10 ADC samples: Avg = 31069 (-139.1 uncal um), Error = 0.8 uncal um, Median = 31068 (-139.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 31062 (-139.1 uncal um), Max = 31078 (-139.2 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 22:31:21.558 -07 000000627 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31069, posNoise = 9, negNoise = 7
17-03-17 22:31:21.558 -07 000000627 INF: Z Motor: After move to -0.139913, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:31:21.558 -07 000000627 INF: Z Motor: Settle wait time = 1451 ms, measure time = 102 ms (allowed 150 ms), total time = 1553 ms
17-03-17 22:31:21.558 -07 000000627 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 22:31:21.608 -07 000000627 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1605 ms
17-03-17 22:31:21.608 -07 000000627 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:31:21.608 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:31:21.608 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:31:21.608 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:31:21.608 -07 000000551 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:31:21.608 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:31:21.608 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:31:21.608 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:31:21.608 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:31:21.618 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:31:21.618 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:31:21.628 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-17 22:31:21.628 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-17 22:31:21.628 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:31:21.668 -07 000000458 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:31:21.868 -07 000000627 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:31:21.868 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:31:21.868 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:31:21.878 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 22:31:21.908 -07 000000480 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:31:21.908 -07 000000626 INF: FPGA: Recv CAMSNAP
17-03-17 22:31:21.908 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 285 ms overall
17-03-17 22:31:21.978 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:31:21.998 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 22:31:21.998 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:31:21.998 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:31:21.998 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 22:31:22.008 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 63. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1016, R2=1046, Total=2062. Warn if over 250 bubbles per interval.
17-03-17 22:31:22.108 -07 000000458 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:31:22.108 -07 000000627 INF: Autofocus start
17-03-17 22:31:22.108 -07 000000627 INF: MeasureProfile start
17-03-17 22:31:22.108 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:31:22.118 -07 000000458 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:31:22.118 -07 000000458 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:31:22.118 -07 000000627 INF: MeasureProfile done
17-03-17 22:31:22.118 -07 000000627 INF: X=-48  Z correction [um]=-0.2370583
17-03-17 22:31:22.118 -07 000000627 INF: Autofocus finished
17-03-17 22:31:22.318 -07 000000424 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:31:22.318 -07 000000458 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 205 ms overall
17-03-17 22:31:22.328 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.73291015625, Z-position -0.139917199043506. ----------
17-03-17 22:31:22.328 -07 000000610 INF: Cycle	64	Tile	2	Exposure Settings		A	454	G	218	T	218	C	454
17-03-17 22:31:22.328 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 29025, sync = True, waitForSettling = True)
17-03-17 22:31:22.328 -07 000000610 INF: Z Motor: Moving to -0.132868 mm, started at -0.139917 mm, distance = 7.05 um
17-03-17 22:31:22.328 -07 000000610 INF: FPGA: Xmit ZDACW 29025\n [Z Motor]
17-03-17 22:31:22.328 -07 000000480 INF: FPGA: Recv ZDACW
17-03-17 22:31:22.338 -07 000000610 INF: FPGA: 'ZDACW 29025' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:31:22.338 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:31:22.338 -07 000000012 INF: FPGA: Recv ZDACR 29025
17-03-17 22:31:22.348 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:22.348 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:31:22.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:22.498 -07 000000424 INF: FPGA: Recv ZSGSRD 29975
17-03-17 22:31:22.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:31:22.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:22.508 -07 000000458 INF: FPGA: Recv ZSGSRD 29977
17-03-17 22:31:22.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:22.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:22.518 -07 000000480 INF: FPGA: Recv ZSGSRD 29967
17-03-17 22:31:22.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:22.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:22.528 -07 000000448 INF: FPGA: Recv ZSGSRD 29973
17-03-17 22:31:22.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:22.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:22.538 -07 000000551 INF: FPGA: Recv ZSGSRD 29976
17-03-17 22:31:22.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:22.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:22.548 -07 000000424 INF: FPGA: Recv ZSGSRD 29969
17-03-17 22:31:22.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:22.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:22.558 -07 000000627 INF: FPGA: Recv ZSGSRD 29970
17-03-17 22:31:22.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:22.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:22.568 -07 000000480 INF: FPGA: Recv ZSGSRD 29974
17-03-17 22:31:22.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:22.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:22.578 -07 000000424 INF: FPGA: Recv ZSGSRD 29977
17-03-17 22:31:22.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:22.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:22.588 -07 000000486 INF: FPGA: Recv ZSGSRD 29974
17-03-17 22:31:22.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:22.598 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:31:22.598 -07 000000551 INF: FPGA: Recv ZPIEZORD 25577
17-03-17 22:31:22.608 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:22.608 -07 000000610 INF: Z Motor: Piezo is near 34.6 V (nominally 0 to 100 V), expect near 44.3 V, since DAC is at 4.429 V. Piezo Error = -9.7 V.
17-03-17 22:31:22.608 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.9 um, Read 10 ADC samples: Avg = 29973 (-132.1 uncal um), Error = 0.8 uncal um, Median = 29974 (-132.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29967 (-132.1 uncal um), Max = 29977 (-132.1 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 22:31:22.608 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29973, posNoise = 4, negNoise = 6
17-03-17 22:31:22.608 -07 000000610 INF: Z Motor: After move to -0.132868, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:31:22.608 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 22:31:22.608 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:31:22.608 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:31:22.608 -07 000000458 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:31:22.608 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:31:22.608 -07 000000448 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:31:22.608 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:31:22.608 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:31:22.608 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:31:22.608 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:31:22.608 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:31:22.608 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:31:22.608 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:31:22.618 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:31:22.618 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:31:22.618 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:31:22.618 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:31:22.628 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 22:31:22.628 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 22:31:22.628 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 22:31:22.628 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 22:31:22.628 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 454 454 218 218 29202 150\n [Camera]
17-03-17 22:31:22.828 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:31:23.288 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 646
17-03-17 22:31:23.288 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 646
17-03-17 22:31:23.288 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:31:23.288 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:31:23.288 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 1458343128, 0x0, 391868352) start.
17-03-17 22:31:23.288 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 646
17-03-17 22:31:23.288 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 646
17-03-17 22:31:23.288 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:31:23.288 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:31:23.288 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-17 22:31:23.478 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29202 839
17-03-17 22:31:23.628 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning grn on 989
17-03-17 22:31:23.688 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 1458343128, 0x0, 391868352) end. Duration was 400 ms.
17-03-17 22:31:23.688 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 22:31:23.688 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:31:23.688 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 401 ms.
17-03-17 22:31:23.688 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 22:31:23.688 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:31:23.688 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:31:23.688 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 22:31:23.698 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:31:23.698 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-17 22:31:23.848 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1207
17-03-17 22:31:23.848 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1207
17-03-17 22:31:23.848 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:31:23.848 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:31:23.848 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start.
17-03-17 22:31:23.848 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1207
17-03-17 22:31:23.848 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1207
17-03-17 22:31:23.858 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:31:23.858 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:31:23.858 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) start.
17-03-17 22:31:24.038 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP 1400
17-03-17 22:31:24.038 -07 000000551 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:31:24.038 -07 000000610 INF: FPGA: 'CAMDBLSNAP 454 454 218 218 29202 150' command took 2 ms to send, 1396 ms to get response, and 1407 ms overall
17-03-17 22:31:24.038 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 22:31:24.038 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.73291015625, Z-Position -0.132876262536136. ------
17-03-17 22:31:24.048 -07 000000458 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:31:24.048 -07 000000480 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.13932 mm
17-03-17 22:31:24.048 -07 000000480 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:31:24.048 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:31:24.048 -07 000000627 INF: Z Motor: Entering MoveAbsStepped (DAC = 30434, sync = True, waitForSettling = False)
17-03-17 22:31:24.048 -07 000000627 INF: Z Motor: Moving to -0.139318 mm, started at -0.132876 mm, distance = -6.44 um
17-03-17 22:31:24.048 -07 000000424 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-17 22:31:24.048 -07 000000424 INF: Y Motor: Moving to 61.5726 mm, started at 60.7329 mm, delta = 0.8397 mm
17-03-17 22:31:24.058 -07 000000458 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:31:24.058 -07 000000627 INF: FPGA: Xmit ZDACW 30434\n [Z Motor]
17-03-17 22:31:24.058 -07 000000448 INF: FPGA: Recv ZDACW
17-03-17 22:31:24.068 -07 000000627 INF: FPGA: 'ZDACW 30434' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 22:31:24.068 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:31:24.068 -07 000000551 INF: FPGA: Recv YRDPOS 124381
17-03-17 22:31:24.078 -07 000000458 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:31:24.078 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-17 22:31:24.078 -07 000000424 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:31:24.078 -07 000000424 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:31:24.078 -07 000000424 INF: Y Motor: Moving 1344 steps-21
17-03-17 22:31:24.088 -07 000000627 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:31:24.088 -07 000000448 INF: FPGA: Recv ZDACR 30434
17-03-17 22:31:24.098 -07 000000424 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:31:24.098 -07 000000627 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:31:24.098 -07 000000627 INF: Z Motor: MoveAbsStepped took 43 ms (did NOT wait for settling yet))
17-03-17 22:31:24.258 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 403 ms.
17-03-17 22:31:24.258 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 22:31:24.258 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:31:24.258 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) end. Duration was 402 ms.
17-03-17 22:31:24.258 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 22:31:24.258 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:31:24.258 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:31:24.258 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 22:31:24.258 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-17 22:31:24.268 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-17 22:31:24.278 -07 000000618 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:31:24.278 -07 000000458 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 22:31:24.468 -07 000000561 INF: FPGA: Recv YMVTILE
17-03-17 22:31:24.468 -07 000000424 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 22:31:24.508 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:31:24.518 -07 000000626 INF: FPGA: Recv YRDPOS 126081
17-03-17 22:31:24.518 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:31:24.518 -07 000000424 INF: Y Motor: Encoder = 126081 = motor step 98500.8 = 61.5630 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:31:24.518 -07 000000424 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-17 22:31:24.518 -07 000000424 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 399 ms, distance = 0.840 mm, average velocity = 2.105 mm/sec
17-03-17 22:31:25.078 -07 000000458 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 64, FrontChillerTemperature: 4.019446,
17-03-17 22:31:25.468 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:31:25.468 -07 000000551 INF: FPGA: Recv YRDPOS 126082
17-03-17 22:31:25.478 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:25.478 -07 000000424 INF: Y Motor: Encoder = 126082 = motor step 98501.6 = 61.5635 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:31:25.498 -07 000000424 INF: Y Motor: After move to 61.572609, error = -0.009132, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:31:25.498 -07 000000424 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 22:31:25.498 -07 000000424 INF: Y Motor: Moved to 61.5635 after 1448 ms (table move)
17-03-17 22:31:25.498 -07 000000480 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139318 mm (DAC = 30434)
17-03-17 22:31:25.498 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:25.508 -07 000000551 INF: FPGA: Recv ZSGSRD 30985
17-03-17 22:31:25.508 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 22:31:25.508 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:25.508 -07 000000627 INF: FPGA: Recv ZSGSRD 30977
17-03-17 22:31:25.518 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:31:25.518 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:25.518 -07 000000448 INF: FPGA: Recv ZSGSRD 30981
17-03-17 22:31:25.528 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:25.528 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:25.528 -07 000000431 INF: FPGA: Recv ZSGSRD 30980
17-03-17 22:31:25.538 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:25.538 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:25.538 -07 000000618 INF: FPGA: Recv ZSGSRD 30982
17-03-17 22:31:25.548 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:25.548 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:25.548 -07 000000627 INF: FPGA: Recv ZSGSRD 30979
17-03-17 22:31:25.558 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:25.558 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:25.558 -07 000000618 INF: FPGA: Recv ZSGSRD 30979
17-03-17 22:31:25.568 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:25.568 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:25.568 -07 000000424 INF: FPGA: Recv ZSGSRD 30973
17-03-17 22:31:25.578 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:25.578 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:25.578 -07 000000431 INF: FPGA: Recv ZSGSRD 30967
17-03-17 22:31:25.588 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:25.588 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:25.588 -07 000000618 INF: FPGA: Recv ZSGSRD 30975
17-03-17 22:31:25.598 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:25.598 -07 000000480 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:31:25.598 -07 000000431 INF: FPGA: Recv ZPIEZORD 26886
17-03-17 22:31:25.608 -07 000000480 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:25.608 -07 000000480 INF: Z Motor: Piezo is near 37.4 V (nominally 0 to 100 V), expect near 46.4 V, since DAC is at 4.644 V. Piezo Error = -9.0 V.
17-03-17 22:31:25.608 -07 000000480 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.3 um, Read 10 ADC samples: Avg = 30978 (-138.5 uncal um), Error = 0.8 uncal um, Median = 30979 (-138.5 uncal um), StdDev = 5 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 30967 (-138.5 uncal um), Max = 30985 (-138.6 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 11 (0.1 uncal um)
17-03-17 22:31:25.608 -07 000000480 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30978, posNoise = 7, negNoise = 11
17-03-17 22:31:25.608 -07 000000480 INF: Z Motor: After move to -0.139318, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:31:25.608 -07 000000480 INF: Z Motor: Settle wait time = 1452 ms, measure time = 101 ms (allowed 150 ms), total time = 1553 ms
17-03-17 22:31:25.608 -07 000000480 INF: Z Motor: Waiting extra 49 ms after reading position to reach expected total of 150 ms
17-03-17 22:31:25.658 -07 000000480 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1607 ms
17-03-17 22:31:25.658 -07 000000480 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:31:25.658 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:31:25.658 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:31:25.658 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:31:25.658 -07 000000431 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:31:25.658 -07 000000012 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:31:25.658 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:31:25.668 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 22:31:25.668 -07 000000012 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:31:25.668 -07 000000012 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 22:31:25.668 -07 000000012 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:31:25.678 -07 000000012 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 22:31:25.678 -07 000000012 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 22:31:25.678 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:31:25.728 -07 000000626 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:31:25.928 -07 000000012 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:31:25.928 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:31:25.928 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:31:25.928 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 594000200, 0x0, 559484976) start.
17-03-17 22:31:25.968 -07 000000429 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:31:25.968 -07 000000551 INF: FPGA: Recv CAMSNAP
17-03-17 22:31:25.968 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 285 ms overall
17-03-17 22:31:26.058 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 594000200, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 22:31:26.058 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:31:26.058 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:31:26.058 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-17 22:31:26.068 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:31:26.068 -07 000000429 INF: Autofocus start
17-03-17 22:31:26.068 -07 000000429 INF: MeasureProfile start
17-03-17 22:31:26.068 -07 000000431 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:31:26.078 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:31:26.078 -07 000000480 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:31:26.078 -07 000000429 INF: MeasureProfile done
17-03-17 22:31:26.078 -07 000000429 INF: X=48  Z correction [um]=0.2069503
17-03-17 22:31:26.078 -07 000000429 INF: Autofocus finished
17-03-17 22:31:26.278 -07 000000561 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:31:26.278 -07 000000480 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:31:26.288 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.5634765625, Z-position -0.139332595738606. ----------
17-03-17 22:31:26.288 -07 000000610 INF: Cycle	64	Tile	3	Exposure Settings		A	454	G	218	T	218	C	454
17-03-17 22:31:26.288 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28992, sync = True, waitForSettling = True)
17-03-17 22:31:26.288 -07 000000610 INF: Z Motor: Moving to -0.132717 mm, started at -0.139333 mm, distance = 6.62 um
17-03-17 22:31:26.288 -07 000000610 INF: FPGA: Xmit ZDACW 28992\n [Z Motor]
17-03-17 22:31:26.288 -07 000000561 INF: FPGA: Recv ZDACW
17-03-17 22:31:26.298 -07 000000610 INF: FPGA: 'ZDACW 28992' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:31:26.298 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:31:26.298 -07 000000448 INF: FPGA: Recv ZDACR 28992
17-03-17 22:31:26.308 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:26.308 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:31:26.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:26.458 -07 000000480 INF: FPGA: Recv ZSGSRD 29951
17-03-17 22:31:26.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:26.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:26.468 -07 000000486 INF: FPGA: Recv ZSGSRD 29946
17-03-17 22:31:26.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:26.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:26.478 -07 000000561 INF: FPGA: Recv ZSGSRD 29953
17-03-17 22:31:26.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:26.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:26.488 -07 000000476 INF: FPGA: Recv ZSGSRD 29952
17-03-17 22:31:26.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:26.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:26.498 -07 000000561 INF: FPGA: Recv ZSGSRD 29947
17-03-17 22:31:26.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:26.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:26.508 -07 000000561 INF: FPGA: Recv ZSGSRD 29953
17-03-17 22:31:26.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:26.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:26.518 -07 000000448 INF: FPGA: Recv ZSGSRD 29950
17-03-17 22:31:26.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:26.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:26.528 -07 000000458 INF: FPGA: Recv ZSGSRD 29952
17-03-17 22:31:26.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:26.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:26.538 -07 000000551 INF: FPGA: Recv ZSGSRD 29945
17-03-17 22:31:26.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:26.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:26.548 -07 000000458 INF: FPGA: Recv ZSGSRD 29943
17-03-17 22:31:26.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:26.558 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:31:26.558 -07 000000551 INF: FPGA: Recv ZPIEZORD 25559
17-03-17 22:31:26.568 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:26.568 -07 000000610 INF: Z Motor: Piezo is near 34.6 V (nominally 0 to 100 V), expect near 44.2 V, since DAC is at 4.424 V. Piezo Error = -9.6 V.
17-03-17 22:31:26.568 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.7 um, Read 10 ADC samples: Avg = 29949 (-131.9 uncal um), Error = 0.8 uncal um, Median = 29950 (-131.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29943 (-131.9 uncal um), Max = 29953 (-132.0 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 22:31:26.568 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29949, posNoise = 4, negNoise = 6
17-03-17 22:31:26.568 -07 000000610 INF: Z Motor: After move to -0.132717, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:31:26.568 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 22:31:26.568 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:31:26.568 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:31:26.568 -07 000000448 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:31:26.568 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:31:26.568 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:31:26.568 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:31:26.568 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:31:26.568 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:31:26.568 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:31:26.568 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:31:26.568 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:31:26.568 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:31:26.578 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 22:31:26.578 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:31:26.578 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:31:26.578 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:31:26.578 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 22:31:26.588 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 22:31:26.588 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 22:31:26.588 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 22:31:26.588 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 454 454 218 218 29169 150\n [Camera]
17-03-17 22:31:26.788 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:31:26.978 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:31:26.978 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 63. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1016, R2=1046, Total=2062. Warn if over 250 bubbles per interval.
17-03-17 22:31:27.238 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 646
17-03-17 22:31:27.238 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 646
17-03-17 22:31:27.238 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:31:27.238 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:31:27.238 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 22:31:27.238 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 646
17-03-17 22:31:27.238 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 646
17-03-17 22:31:27.248 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:31:27.248 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:31:27.248 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 22:31:27.428 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29169 839
17-03-17 22:31:27.578 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning grn on 989
17-03-17 22:31:27.628 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 381 ms.
17-03-17 22:31:27.628 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-17 22:31:27.628 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:31:27.628 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 384 ms.
17-03-17 22:31:27.628 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 22:31:27.628 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:31:27.628 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 22:31:27.628 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 22:31:27.628 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 22:31:27.638 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 22:31:27.798 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1207
17-03-17 22:31:27.798 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1207
17-03-17 22:31:27.798 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:31:27.798 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:31:27.798 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-17 22:31:27.808 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1207
17-03-17 22:31:27.808 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1207
17-03-17 22:31:27.808 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:31:27.808 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:31:27.808 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 22:31:27.988 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP 1400
17-03-17 22:31:27.988 -07 000000431 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:31:27.988 -07 000000610 INF: FPGA: 'CAMDBLSNAP 454 454 218 218 29169 150' command took 2 ms to send, 1399 ms to get response, and 1407 ms overall
17-03-17 22:31:27.998 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 22:31:27.998 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.5634765625, Z-Position -0.132722081444734. ------
17-03-17 22:31:27.998 -07 000000429 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:31:27.998 -07 000000424 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.13914 mm
17-03-17 22:31:27.998 -07 000000424 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:31:27.998 -07 000000627 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:31:27.998 -07 000000458 INF: Z Motor: Entering MoveAbsStepped (DAC = 30394, sync = True, waitForSettling = False)
17-03-17 22:31:27.998 -07 000000458 INF: Z Motor: Moving to -0.139135 mm, started at -0.132722 mm, distance = -6.41 um
17-03-17 22:31:28.008 -07 000000429 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:31:28.008 -07 000000431 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-17 22:31:28.008 -07 000000431 INF: Y Motor: Moving to 62.4026 mm, started at 61.5635 mm, delta = 0.8391 mm
17-03-17 22:31:28.008 -07 000000458 INF: FPGA: Xmit ZDACW 30394\n [Z Motor]
17-03-17 22:31:28.008 -07 000000626 INF: FPGA: Recv ZDACW
17-03-17 22:31:28.018 -07 000000458 INF: FPGA: 'ZDACW 30394' command took 1 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:31:28.018 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:31:28.018 -07 000000561 INF: FPGA: Recv YRDPOS 126082
17-03-17 22:31:28.028 -07 000000429 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:31:28.028 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:31:28.028 -07 000000431 INF: Y Motor: Encoder = 126082 = motor step 98501.6 = 61.5635 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:31:28.028 -07 000000431 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:31:28.028 -07 000000431 INF: Y Motor: Moving 1343 steps-20
17-03-17 22:31:28.038 -07 000000458 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:31:28.038 -07 000000561 INF: FPGA: Recv ZDACR 30394
17-03-17 22:31:28.048 -07 000000431 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:31:28.048 -07 000000458 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:31:28.048 -07 000000458 INF: Z Motor: MoveAbsStepped took 40 ms (did NOT wait for settling yet))
17-03-17 22:31:28.188 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 387 ms.
17-03-17 22:31:28.188 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 22:31:28.188 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:31:28.188 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 386 ms.
17-03-17 22:31:28.188 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 22:31:28.188 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:31:28.198 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:31:28.198 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-17 22:31:28.198 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 22:31:28.208 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 22:31:28.228 -07 000000627 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:31:28.228 -07 000000429 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 22:31:28.418 -07 000000458 INF: FPGA: Recv YMVTILE
17-03-17 22:31:28.418 -07 000000431 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 22:31:28.458 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:31:28.468 -07 000000429 INF: FPGA: Recv YRDPOS 127785
17-03-17 22:31:28.468 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 22:31:28.468 -07 000000431 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:31:28.468 -07 000000431 INF: Y Motor: Position error before settling (table move) = -16 encoder counts (-0.008 mm)
17-03-17 22:31:28.468 -07 000000431 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.839 mm, average velocity = 2.114 mm/sec
17-03-17 22:31:29.418 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:31:29.418 -07 000000458 INF: FPGA: Recv YRDPOS 127785
17-03-17 22:31:29.428 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:31:29.428 -07 000000431 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:31:29.448 -07 000000431 INF: Y Motor: After move to 62.402607, error = -0.007587, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:31:29.448 -07 000000431 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:31:29.448 -07 000000431 INF: Y Motor: Moved to 62.3950 after 1445 ms (table move)
17-03-17 22:31:29.448 -07 000000424 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139135 mm (DAC = 30394)
17-03-17 22:31:29.448 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:29.458 -07 000000627 INF: FPGA: Recv ZSGSRD 30961
17-03-17 22:31:29.458 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 22:31:29.458 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:29.458 -07 000000561 INF: FPGA: Recv ZSGSRD 30947
17-03-17 22:31:29.468 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:31:29.468 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:29.468 -07 000000458 INF: FPGA: Recv ZSGSRD 30945
17-03-17 22:31:29.478 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:29.478 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:29.478 -07 000000448 INF: FPGA: Recv ZSGSRD 30959
17-03-17 22:31:29.488 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:29.488 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:29.488 -07 000000626 INF: FPGA: Recv ZSGSRD 30950
17-03-17 22:31:29.498 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:29.498 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:29.498 -07 000000627 INF: FPGA: Recv ZSGSRD 30944
17-03-17 22:31:29.508 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:29.508 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:29.508 -07 000000551 INF: FPGA: Recv ZSGSRD 30949
17-03-17 22:31:29.518 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:29.518 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:29.518 -07 000000627 INF: FPGA: Recv ZSGSRD 30941
17-03-17 22:31:29.528 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:29.528 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:29.528 -07 000000561 INF: FPGA: Recv ZSGSRD 30951
17-03-17 22:31:29.538 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:29.538 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:29.538 -07 000000431 INF: FPGA: Recv ZSGSRD 30947
17-03-17 22:31:29.548 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:29.548 -07 000000424 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:31:29.548 -07 000000458 INF: FPGA: Recv ZPIEZORD 26915
17-03-17 22:31:29.558 -07 000000424 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:29.558 -07 000000424 INF: Z Motor: Piezo is near 37.5 V (nominally 0 to 100 V), expect near 46.4 V, since DAC is at 4.638 V. Piezo Error = -8.9 V.
17-03-17 22:31:29.558 -07 000000424 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.1 um, Read 10 ADC samples: Avg = 30949 (-138.3 uncal um), Error = 0.8 uncal um, Median = 30948 (-138.3 uncal um), StdDev = 6 (0.0 uncal um), Range = 20 (0.1 uncal um), Min = 30941 (-138.3 uncal um), Max = 30961 (-138.4 uncal um), Pos Noise = 12 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 22:31:29.558 -07 000000424 INF: Z Motor: ADC noise = 12, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30949, posNoise = 12, negNoise = 8
17-03-17 22:31:29.558 -07 000000424 INF: Z Motor: After move to -0.139135, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:31:29.558 -07 000000424 INF: Z Motor: Settle wait time = 1448 ms, measure time = 103 ms (allowed 150 ms), total time = 1551 ms
17-03-17 22:31:29.558 -07 000000424 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 22:31:29.608 -07 000000424 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1603 ms
17-03-17 22:31:29.608 -07 000000424 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:31:29.608 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:31:29.608 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:31:29.608 -07 000000429 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:31:29.608 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:31:29.608 -07 000000551 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:31:29.608 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:31:29.608 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:31:29.608 -07 000000551 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:31:29.618 -07 000000551 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:31:29.618 -07 000000551 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:31:29.628 -07 000000551 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 22:31:29.628 -07 000000551 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-17 22:31:29.628 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:31:29.668 -07 000000448 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:31:29.868 -07 000000561 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:31:29.868 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:31:29.878 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:31:29.878 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1201016592, 0x0, 559484976) start.
17-03-17 22:31:29.908 -07 000000626 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:31:29.908 -07 000000551 INF: FPGA: Recv CAMSNAP
17-03-17 22:31:29.908 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 284 ms overall
17-03-17 22:31:29.988 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1201016592, 0x0, 559484976) end. Duration was 117 ms.
17-03-17 22:31:29.988 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:31:29.988 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 22:31:29.998 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 120 ms.
17-03-17 22:31:30.008 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:31:30.008 -07 000000627 INF: Autofocus start
17-03-17 22:31:30.008 -07 000000627 INF: MeasureProfile start
17-03-17 22:31:30.008 -07 000000429 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:31:30.018 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:31:30.018 -07 000000431 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:31:30.018 -07 000000627 INF: MeasureProfile done
17-03-17 22:31:30.018 -07 000000627 INF: X=-16  Z correction [um]=-0.08128808
17-03-17 22:31:30.018 -07 000000627 INF: Autofocus finished
17-03-17 22:31:30.218 -07 000000458 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:31:30.218 -07 000000431 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:31:30.228 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.39501953125, Z-position -0.139146293586495. ----------
17-03-17 22:31:30.228 -07 000000610 INF: Cycle	64	Tile	4	Exposure Settings		A	454	G	218	T	218	C	454
17-03-17 22:31:30.228 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28889, sync = True, waitForSettling = True)
17-03-17 22:31:30.228 -07 000000610 INF: Z Motor: Moving to -0.132245 mm, started at -0.139146 mm, distance = 6.90 um
17-03-17 22:31:30.228 -07 000000610 INF: FPGA: Xmit ZDACW 28889\n [Z Motor]
17-03-17 22:31:30.228 -07 000000561 INF: FPGA: Recv ZDACW
17-03-17 22:31:30.238 -07 000000610 INF: FPGA: 'ZDACW 28889' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:31:30.238 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:31:30.238 -07 000000626 INF: FPGA: Recv ZDACR 28889
17-03-17 22:31:30.248 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:30.248 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:31:30.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:30.398 -07 000000626 INF: FPGA: Recv ZSGSRD 29875
17-03-17 22:31:30.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:31:30.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:30.408 -07 000000431 INF: FPGA: Recv ZSGSRD 29879
17-03-17 22:31:30.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:30.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:30.418 -07 000000626 INF: FPGA: Recv ZSGSRD 29876
17-03-17 22:31:30.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:30.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:30.438 -07 000000561 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 64, FrontChillerTemperature: 3.996267,
17-03-17 22:31:30.438 -07 000000561 INF: FPGA: Recv ZSGSRD 29876
17-03-17 22:31:30.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:31:30.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:30.448 -07 000000561 INF: FPGA: Recv ZSGSRD 29876
17-03-17 22:31:30.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:30.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:30.468 -07 000000429 INF: FPGA: Recv ZSGSRD 29880
17-03-17 22:31:30.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:31:30.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:30.488 -07 000000551 INF: FPGA: Recv ZSGSRD 29878
17-03-17 22:31:30.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:31:30.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:30.518 -07 000000429 INF: FPGA: Recv ZSGSRD 29876
17-03-17 22:31:30.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:31:30.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:30.528 -07 000000551 INF: FPGA: Recv ZSGSRD 29878
17-03-17 22:31:30.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:30.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:30.538 -07 000000429 INF: FPGA: Recv ZSGSRD 29879
17-03-17 22:31:30.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:30.548 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:31:30.548 -07 000000448 INF: FPGA: Recv ZPIEZORD 25509
17-03-17 22:31:30.558 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:30.558 -07 000000610 INF: Z Motor: Piezo is near 34.5 V (nominally 0 to 100 V), expect near 44.1 V, since DAC is at 4.408 V. Piezo Error = -9.6 V.
17-03-17 22:31:30.558 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.2 um, Read 10 ADC samples: Avg = 29877 (-131.5 uncal um), Error = 0.8 uncal um, Median = 29877 (-131.5 uncal um), StdDev = 2 (0.0 uncal um), Range = 5 (0.0 uncal um), Min = 29875 (-131.5 uncal um), Max = 29880 (-131.5 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 2 (0.0 uncal um)
17-03-17 22:31:30.558 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29877, posNoise = 3, negNoise = 2
17-03-17 22:31:30.558 -07 000000610 INF: Z Motor: After move to -0.132245, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:31:30.558 -07 000000610 INF: Z Motor: MoveAbsStepped took 328 ms)
17-03-17 22:31:30.558 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:31:30.558 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:31:30.558 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:31:30.558 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:31:30.558 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:31:30.558 -07 000000551 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:31:30.558 -07 000000431 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:31:30.558 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:31:30.558 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:31:30.558 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:31:30.558 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:31:30.558 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:31:30.568 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:31:30.568 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:31:30.568 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:31:30.568 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:31:30.578 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 22:31:30.578 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 22:31:30.578 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 22:31:30.578 -07 000000431 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 22:31:30.578 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 454 454 218 218 29066 150\n [Camera]
17-03-17 22:31:30.778 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:31:31.228 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 646
17-03-17 22:31:31.228 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 646
17-03-17 22:31:31.228 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:31:31.228 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:31:31.228 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start.
17-03-17 22:31:31.238 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 646
17-03-17 22:31:31.238 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 646
17-03-17 22:31:31.238 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:31:31.238 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:31:31.238 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) start.
17-03-17 22:31:31.428 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29066 839
17-03-17 22:31:31.578 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP turning grn on 989
17-03-17 22:31:31.608 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 22:31:31.608 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 22:31:31.608 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:31:31.608 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) end. Duration was 376 ms.
17-03-17 22:31:31.608 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 22:31:31.608 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:31:31.618 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:31:31.618 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 22:31:31.618 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:31:31.628 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 22:31:31.788 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1207
17-03-17 22:31:31.788 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1207
17-03-17 22:31:31.798 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:31:31.798 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:31:31.798 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-17 22:31:31.798 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1207
17-03-17 22:31:31.798 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1207
17-03-17 22:31:31.798 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:31:31.798 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:31:31.798 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-17 22:31:31.978 -07 000000431 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:31:31.978 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 63. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1016, R2=1046, Total=2062. Warn if over 250 bubbles per interval.
17-03-17 22:31:31.988 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP 1399
17-03-17 22:31:31.988 -07 000000551 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:31:31.988 -07 000000610 INF: FPGA: 'CAMDBLSNAP 454 454 218 218 29066 150' command took 2 ms to send, 1401 ms to get response, and 1406 ms overall
17-03-17 22:31:31.988 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 22:31:31.988 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.39501953125, Z-Position -0.132259538170527. ------
17-03-17 22:31:32.118 -07 000000627 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.13902 mm
17-03-17 22:31:32.118 -07 000000627 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:31:32.118 -07 000000458 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:31:32.118 -07 000000431 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-17 22:31:32.118 -07 000000551 INF: Z Motor: Entering MoveAbsStepped (DAC = 30368, sync = True, waitForSettling = False)
17-03-17 22:31:32.118 -07 000000551 INF: Z Motor: Moving to -0.139016 mm, started at -0.132260 mm, distance = -6.76 um
17-03-17 22:31:32.118 -07 000000431 INF: Y Motor: Moving to 63.2326 mm, started at 62.3950 mm, delta = 0.8376 mm
17-03-17 22:31:32.118 -07 000000448 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:31:32.128 -07 000000458 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:31:32.128 -07 000000551 INF: FPGA: Xmit ZDACW 30368\n [Z Motor]
17-03-17 22:31:32.128 -07 000000429 INF: FPGA: Recv ZDACW
17-03-17 22:31:32.138 -07 000000551 INF: FPGA: 'ZDACW 30368' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 22:31:32.138 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:31:32.138 -07 000000448 INF: FPGA: Recv YRDPOS 127785
17-03-17 22:31:32.148 -07 000000458 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:31:32.148 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-17 22:31:32.148 -07 000000431 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:31:32.148 -07 000000431 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:31:32.148 -07 000000431 INF: Y Motor: Moving 1340 steps-16
17-03-17 22:31:32.158 -07 000000551 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:31:32.158 -07 000000626 INF: FPGA: Recv ZDACR 30368
17-03-17 22:31:32.168 -07 000000551 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:31:32.168 -07 000000431 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:31:32.168 -07 000000551 INF: Z Motor: MoveAbsStepped took 45 ms (did NOT wait for settling yet))
17-03-17 22:31:32.198 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 396 ms.
17-03-17 22:31:32.198 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 22:31:32.198 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:31:32.198 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 402 ms.
17-03-17 22:31:32.198 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 22:31:32.198 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:31:32.198 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:31:32.198 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 22:31:32.198 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-17 22:31:32.208 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-17 22:31:32.348 -07 000000561 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:31:32.348 -07 000000458 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 22:31:32.538 -07 000000576 INF: FPGA: Recv YMVTILE
17-03-17 22:31:32.538 -07 000000431 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 22:31:32.578 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:31:32.588 -07 000000561 INF: FPGA: Recv YRDPOS 129482
17-03-17 22:31:32.588 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 22:31:32.588 -07 000000431 INF: Y Motor: Encoder = 129482 = motor step 101157.8 = 63.2236 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:31:32.588 -07 000000431 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-17 22:31:32.588 -07 000000431 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.838 mm, average velocity = 2.110 mm/sec
17-03-17 22:31:33.538 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:31:33.538 -07 000000626 INF: FPGA: Recv YRDPOS 129482
17-03-17 22:31:33.548 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:31:33.548 -07 000000431 INF: Y Motor: Encoder = 129482 = motor step 101157.8 = 63.2236 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:31:33.568 -07 000000431 INF: Y Motor: After move to 63.232609, error = -0.008976, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:31:33.568 -07 000000431 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:31:33.568 -07 000000431 INF: Y Motor: Moved to 63.2236 after 1451 ms (table move)
17-03-17 22:31:33.568 -07 000000627 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139016 mm (DAC = 30368)
17-03-17 22:31:33.568 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:33.578 -07 000000551 INF: FPGA: Recv ZSGSRD 30934
17-03-17 22:31:33.578 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-17 22:31:33.578 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:33.578 -07 000000626 INF: FPGA: Recv ZSGSRD 30936
17-03-17 22:31:33.588 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:31:33.588 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:33.588 -07 000000431 INF: FPGA: Recv ZSGSRD 30932
17-03-17 22:31:33.598 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:33.598 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:33.598 -07 000000424 INF: FPGA: Recv ZSGSRD 30929
17-03-17 22:31:33.608 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:33.608 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:33.608 -07 000000551 INF: FPGA: Recv ZSGSRD 30935
17-03-17 22:31:33.618 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:33.618 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:33.618 -07 000000626 INF: FPGA: Recv ZSGSRD 30938
17-03-17 22:31:33.628 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:33.628 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:33.628 -07 000000431 INF: FPGA: Recv ZSGSRD 30927
17-03-17 22:31:33.638 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:33.638 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:33.638 -07 000000561 INF: FPGA: Recv ZSGSRD 30927
17-03-17 22:31:33.648 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:33.648 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:33.648 -07 000000551 INF: FPGA: Recv ZSGSRD 30927
17-03-17 22:31:33.658 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:33.658 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:33.658 -07 000000626 INF: FPGA: Recv ZSGSRD 30930
17-03-17 22:31:33.668 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:33.668 -07 000000627 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:31:33.668 -07 000000458 INF: FPGA: Recv ZPIEZORD 26931
17-03-17 22:31:33.678 -07 000000627 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:33.678 -07 000000627 INF: Z Motor: Piezo is near 37.5 V (nominally 0 to 100 V), expect near 46.3 V, since DAC is at 4.634 V. Piezo Error = -8.8 V.
17-03-17 22:31:33.678 -07 000000627 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.0 um, Read 10 ADC samples: Avg = 30932 (-138.2 uncal um), Error = 0.8 uncal um, Median = 30931 (-138.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30927 (-138.2 uncal um), Max = 30938 (-138.3 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 22:31:33.678 -07 000000627 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30932, posNoise = 6, negNoise = 5
17-03-17 22:31:33.678 -07 000000627 INF: Z Motor: After move to -0.139016, error = -0.000021, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:31:33.678 -07 000000627 INF: Z Motor: Settle wait time = 1454 ms, measure time = 101 ms (allowed 150 ms), total time = 1555 ms
17-03-17 22:31:33.678 -07 000000627 INF: Z Motor: Waiting extra 49 ms after reading position to reach expected total of 150 ms
17-03-17 22:31:33.728 -07 000000627 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1607 ms
17-03-17 22:31:33.728 -07 000000627 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:31:33.728 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:31:33.728 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:31:33.728 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:31:33.728 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:31:33.728 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:31:33.728 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:31:33.728 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:31:33.728 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:31:33.738 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:31:33.738 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:31:33.738 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 22:31:33.738 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 22:31:33.748 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:31:33.788 -07 000000431 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:31:33.988 -07 000000576 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:31:33.988 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:31:33.988 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:31:33.988 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 22:31:34.028 -07 000000462 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:31:34.028 -07 000000626 INF: FPGA: Recv CAMSNAP
17-03-17 22:31:34.028 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 284 ms overall
17-03-17 22:31:34.108 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 22:31:34.108 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:31:34.108 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:31:34.108 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 22:31:34.128 -07 000000627 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:31:34.128 -07 000000458 INF: Autofocus start
17-03-17 22:31:34.128 -07 000000458 INF: MeasureProfile start
17-03-17 22:31:34.128 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:31:34.138 -07 000000627 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 22:31:34.138 -07 000000627 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:31:34.138 -07 000000458 INF: MeasureProfile done
17-03-17 22:31:34.138 -07 000000458 INF: X=0  Z correction [um]=-0.02394831
17-03-17 22:31:34.138 -07 000000458 INF: Autofocus finished
17-03-17 22:31:34.338 -07 000000462 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:31:34.338 -07 000000627 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:31:34.338 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.2236328125, Z-position -0.139037081980085. ----------
17-03-17 22:31:34.338 -07 000000610 INF: Cycle	64	Tile	5	Exposure Settings		A	454	G	218	T	218	C	454
17-03-17 22:31:34.348 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28875, sync = True, waitForSettling = True)
17-03-17 22:31:34.348 -07 000000610 INF: Z Motor: Moving to -0.132181 mm, started at -0.139037 mm, distance = 6.86 um
17-03-17 22:31:34.348 -07 000000610 INF: FPGA: Xmit ZDACW 28875\n [Z Motor]
17-03-17 22:31:34.348 -07 000000576 INF: FPGA: Recv ZDACW
17-03-17 22:31:34.358 -07 000000610 INF: FPGA: 'ZDACW 28875' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:34.358 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:31:34.358 -07 000000551 INF: FPGA: Recv ZDACR 28875
17-03-17 22:31:34.368 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:34.368 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:31:34.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:34.518 -07 000000462 INF: FPGA: Recv ZSGSRD 29868
17-03-17 22:31:34.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:31:34.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:34.528 -07 000000561 INF: FPGA: Recv ZSGSRD 29866
17-03-17 22:31:34.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:34.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:34.538 -07 000000458 INF: FPGA: Recv ZSGSRD 29869
17-03-17 22:31:34.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:34.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:34.548 -07 000000424 INF: FPGA: Recv ZSGSRD 29867
17-03-17 22:31:34.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:31:34.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:34.558 -07 000000561 INF: FPGA: Recv ZSGSRD 29863
17-03-17 22:31:34.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:34.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:34.568 -07 000000626 INF: FPGA: Recv ZSGSRD 29866
17-03-17 22:31:34.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:34.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:34.578 -07 000000627 INF: FPGA: Recv ZSGSRD 29862
17-03-17 22:31:34.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:34.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:34.588 -07 000000561 INF: FPGA: Recv ZSGSRD 29868
17-03-17 22:31:34.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:34.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:34.598 -07 000000458 INF: FPGA: Recv ZSGSRD 29866
17-03-17 22:31:34.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:34.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:34.608 -07 000000576 INF: FPGA: Recv ZSGSRD 29868
17-03-17 22:31:34.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:34.618 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:31:34.618 -07 000000626 INF: FPGA: Recv ZPIEZORD 25530
17-03-17 22:31:34.628 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:34.628 -07 000000610 INF: Z Motor: Piezo is near 34.5 V (nominally 0 to 100 V), expect near 44.1 V, since DAC is at 4.406 V. Piezo Error = -9.5 V.
17-03-17 22:31:34.628 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.2 um, Read 10 ADC samples: Avg = 29866 (-131.4 uncal um), Error = 0.8 uncal um, Median = 29866 (-131.4 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 29862 (-131.4 uncal um), Max = 29869 (-131.4 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 22:31:34.628 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29866, posNoise = 3, negNoise = 4
17-03-17 22:31:34.628 -07 000000610 INF: Z Motor: After move to -0.132181, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:31:34.628 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 22:31:34.628 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:31:34.628 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:31:34.628 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:31:34.628 -07 000000551 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:31:34.628 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:31:34.628 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:31:34.628 -07 000000627 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:31:34.628 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:31:34.628 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:31:34.628 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:31:34.628 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:31:34.628 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:31:34.638 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:31:34.638 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:31:34.638 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:31:34.638 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:31:34.648 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 22:31:34.648 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 22:31:34.648 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 22:31:34.648 -07 000000627 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 22:31:34.648 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 454 454 218 218 29052 150\n [Camera]
17-03-17 22:31:34.848 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:31:35.298 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 646
17-03-17 22:31:35.298 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 646
17-03-17 22:31:35.298 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:31:35.308 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 646
17-03-17 22:31:35.308 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 646
17-03-17 22:31:35.308 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:31:35.308 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:31:35.308 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 22:31:35.318 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:31:35.318 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 22:31:35.498 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29052 839
17-03-17 22:31:35.648 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning grn on 989
17-03-17 22:31:35.698 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 393 ms.
17-03-17 22:31:35.698 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 22:31:35.698 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:31:35.708 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:31:35.708 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 22:31:35.708 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 394 ms.
17-03-17 22:31:35.708 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 22:31:35.708 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:31:35.708 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:31:35.718 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-17 22:31:35.838 -07 000000431 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 64, FrontChillerTemperature: 4.014009,
17-03-17 22:31:35.858 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1207
17-03-17 22:31:35.858 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1207
17-03-17 22:31:35.858 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:31:35.868 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1207
17-03-17 22:31:35.868 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1207
17-03-17 22:31:35.868 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:31:35.978 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:31:35.988 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-17 22:31:35.988 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:31:35.988 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-17 22:31:36.058 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP 1400
17-03-17 22:31:36.058 -07 000000626 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:31:36.058 -07 000000610 INF: FPGA: 'CAMDBLSNAP 454 454 218 218 29052 150' command took 2 ms to send, 1401 ms to get response, and 1407 ms overall
17-03-17 22:31:36.058 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 22:31:36.058 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.2236328125, Z-Position -0.132188871836968. ------
17-03-17 22:31:36.058 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:31:36.058 -07 000000458 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.13868 mm
17-03-17 22:31:36.058 -07 000000458 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:31:36.068 -07 000000551 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-17 22:31:36.068 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:31:36.068 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:31:36.068 -07 000000551 INF: Y Motor: Moving to 64.0626 mm, started at 63.2236 mm, delta = 0.8390 mm
17-03-17 22:31:36.068 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:31:36.068 -07 000000626 INF: Z Motor: Entering MoveAbsStepped (DAC = 30295, sync = True, waitForSettling = False)
17-03-17 22:31:36.068 -07 000000626 INF: Z Motor: Moving to -0.138682 mm, started at -0.132189 mm, distance = -6.49 um
17-03-17 22:31:36.068 -07 000000012 INF: FPGA: Recv YRDPOS 129483
17-03-17 22:31:36.078 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:31:36.078 -07 000000551 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:31:36.078 -07 000000431 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:31:36.078 -07 000000551 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:31:36.078 -07 000000551 INF: Y Motor: Moving 1342 steps-18
17-03-17 22:31:36.088 -07 000000626 INF: FPGA: Xmit ZDACW 30295\n [Z Motor]
17-03-17 22:31:36.088 -07 000000476 INF: FPGA: Recv ZDACW
17-03-17 22:31:36.098 -07 000000551 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:31:36.098 -07 000000626 INF: FPGA: 'ZDACW 30295' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-17 22:31:36.108 -07 000000626 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:31:36.108 -07 000000476 INF: FPGA: Recv ZDACR 30295
17-03-17 22:31:36.118 -07 000000626 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:31:36.118 -07 000000626 INF: Z Motor: MoveAbsStepped took 48 ms (did NOT wait for settling yet))
17-03-17 22:31:36.278 -07 000000012 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:31:36.278 -07 000000431 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 212 ms overall
17-03-17 22:31:36.368 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 383 ms.
17-03-17 22:31:36.368 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-17 22:31:36.368 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:31:36.368 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:31:36.378 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 388 ms.
17-03-17 22:31:36.378 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 22:31:36.378 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:31:36.378 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 511 ms.
17-03-17 22:31:36.378 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:31:36.378 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 515 ms.
17-03-17 22:31:36.468 -07 000000012 INF: FPGA: Recv YMVTILE
17-03-17 22:31:36.468 -07 000000551 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 392 ms overall
17-03-17 22:31:36.508 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:31:36.518 -07 000000476 INF: FPGA: Recv YRDPOS 131188
17-03-17 22:31:36.518 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 22:31:36.518 -07 000000551 INF: Y Motor: Encoder = 131188 = motor step 102490.6 = 64.0566 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:31:36.518 -07 000000551 INF: Y Motor: Position error before settling (table move) = -12 encoder counts (-0.006 mm)
17-03-17 22:31:36.518 -07 000000551 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 393 ms, distance = 0.839 mm, average velocity = 2.135 mm/sec
17-03-17 22:31:36.978 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:31:36.978 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 63. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1016, R2=1046, Total=2062. Warn if over 250 bubbles per interval.
17-03-17 22:31:37.468 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:31:37.468 -07 000000012 INF: FPGA: Recv YRDPOS 131188
17-03-17 22:31:37.478 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:37.478 -07 000000551 INF: Y Motor: Encoder = 131188 = motor step 102490.6 = 64.0566 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:31:37.498 -07 000000551 INF: Y Motor: After move to 64.062607, error = -0.005966, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:31:37.498 -07 000000551 INF: Y Motor: Position error after settling (table move) = -12 encoder counts (-0.006 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:31:37.498 -07 000000551 INF: Y Motor: Moved to 64.0566 after 1433 ms (table move)
17-03-17 22:31:37.498 -07 000000458 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138682 mm (DAC = 30295)
17-03-17 22:31:37.498 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:37.508 -07 000000431 INF: FPGA: Recv ZSGSRD 30884
17-03-17 22:31:37.508 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 22:31:37.508 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:37.508 -07 000000431 INF: FPGA: Recv ZSGSRD 30880
17-03-17 22:31:37.518 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:37.518 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:37.518 -07 000000431 INF: FPGA: Recv ZSGSRD 30882
17-03-17 22:31:37.528 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:37.528 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:37.528 -07 000000431 INF: FPGA: Recv ZSGSRD 30876
17-03-17 22:31:37.538 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:37.538 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:37.538 -07 000000431 INF: FPGA: Recv ZSGSRD 30883
17-03-17 22:31:37.548 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:37.548 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:37.548 -07 000000431 INF: FPGA: Recv ZSGSRD 30876
17-03-17 22:31:37.558 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:37.558 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:37.558 -07 000000462 INF: FPGA: Recv ZSGSRD 30879
17-03-17 22:31:37.568 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:37.568 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:37.568 -07 000000551 INF: FPGA: Recv ZSGSRD 30875
17-03-17 22:31:37.578 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:37.578 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:37.578 -07 000000576 INF: FPGA: Recv ZSGSRD 30877
17-03-17 22:31:37.588 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:37.588 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:37.588 -07 000000480 INF: FPGA: Recv ZSGSRD 30882
17-03-17 22:31:37.598 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:37.598 -07 000000458 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:31:37.598 -07 000000462 INF: FPGA: Recv ZPIEZORD 26852
17-03-17 22:31:37.608 -07 000000458 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:37.608 -07 000000458 INF: Z Motor: Piezo is near 37.4 V (nominally 0 to 100 V), expect near 46.2 V, since DAC is at 4.623 V. Piezo Error = -8.9 V.
17-03-17 22:31:37.608 -07 000000458 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.7 um, Read 10 ADC samples: Avg = 30879 (-137.9 uncal um), Error = 0.8 uncal um, Median = 30880 (-137.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 30875 (-137.9 uncal um), Max = 30884 (-137.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 22:31:37.608 -07 000000458 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30879, posNoise = 5, negNoise = 4
17-03-17 22:31:37.608 -07 000000458 INF: Z Motor: After move to -0.138682, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:31:37.608 -07 000000458 INF: Z Motor: Settle wait time = 1435 ms, measure time = 104 ms (allowed 150 ms), total time = 1539 ms
17-03-17 22:31:37.608 -07 000000458 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 22:31:37.658 -07 000000458 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1592 ms
17-03-17 22:31:37.658 -07 000000458 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:31:37.658 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:31:37.658 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:31:37.658 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:31:37.658 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:31:37.658 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:31:37.658 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:31:37.658 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:31:37.658 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:31:37.668 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:31:37.668 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:31:37.678 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 22:31:37.678 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 22:31:37.678 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:31:37.728 -07 000000627 INF: FPGA: Recv @CAMSNAP turning led on 41
17-03-17 22:31:37.928 -07 000000448 INF: FPGA: Recv @CAMSNAP img rdy 241
17-03-17 22:31:37.928 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 241
17-03-17 22:31:37.928 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:31:37.928 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 22:31:37.968 -07 000000551 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:31:37.968 -07 000000626 INF: FPGA: Recv CAMSNAP
17-03-17 22:31:37.968 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 284 ms overall
17-03-17 22:31:38.048 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 120 ms.
17-03-17 22:31:38.048 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:31:38.048 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:31:38.048 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 123 ms.
17-03-17 22:31:38.068 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:31:38.068 -07 000000618 INF: Autofocus start
17-03-17 22:31:38.068 -07 000000618 INF: MeasureProfile start
17-03-17 22:31:38.068 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:31:38.078 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:31:38.078 -07 000000462 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:31:38.088 -07 000000618 INF: MeasureProfile done
17-03-17 22:31:38.088 -07 000000618 INF: X=-16  Z correction [um]=-0.08128808
17-03-17 22:31:38.088 -07 000000618 INF: Autofocus finished
17-03-17 22:31:38.278 -07 000000476 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:31:38.278 -07 000000462 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-17 22:31:38.278 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.056640625, Z-position -0.138696598736572. ----------
17-03-17 22:31:38.278 -07 000000610 INF: Cycle	64	Tile	6	Exposure Settings		A	454	G	218	T	218	C	454
17-03-17 22:31:38.288 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28790, sync = True, waitForSettling = True)
17-03-17 22:31:38.288 -07 000000610 INF: Z Motor: Moving to -0.131792 mm, started at -0.138697 mm, distance = 6.90 um
17-03-17 22:31:38.288 -07 000000610 INF: FPGA: Xmit ZDACW 28790\n [Z Motor]
17-03-17 22:31:38.288 -07 000000618 INF: FPGA: Recv ZDACW
17-03-17 22:31:38.298 -07 000000610 INF: FPGA: 'ZDACW 28790' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:31:38.298 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:31:38.298 -07 000000476 INF: FPGA: Recv ZDACR 28790
17-03-17 22:31:38.308 -07 000000610 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:38.308 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:31:38.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:38.458 -07 000000626 INF: FPGA: Recv ZSGSRD 29807
17-03-17 22:31:38.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:31:38.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:38.468 -07 000000480 INF: FPGA: Recv ZSGSRD 29803
17-03-17 22:31:38.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:38.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:38.478 -07 000000627 INF: FPGA: Recv ZSGSRD 29805
17-03-17 22:31:38.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:38.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:38.488 -07 000000476 INF: FPGA: Recv ZSGSRD 29808
17-03-17 22:31:38.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:38.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:38.498 -07 000000626 INF: FPGA: Recv ZSGSRD 29801
17-03-17 22:31:38.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:38.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:38.508 -07 000000480 INF: FPGA: Recv ZSGSRD 29800
17-03-17 22:31:38.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:38.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:38.518 -07 000000626 INF: FPGA: Recv ZSGSRD 29802
17-03-17 22:31:38.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:38.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:38.528 -07 000000551 INF: FPGA: Recv ZSGSRD 29804
17-03-17 22:31:38.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:38.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:38.538 -07 000000626 INF: FPGA: Recv ZSGSRD 29805
17-03-17 22:31:38.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:38.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:38.548 -07 000000424 INF: FPGA: Recv ZSGSRD 29801
17-03-17 22:31:38.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:38.558 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:31:38.558 -07 000000431 INF: FPGA: Recv ZPIEZORD 25476
17-03-17 22:31:38.568 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:38.568 -07 000000610 INF: Z Motor: Piezo is near 34.4 V (nominally 0 to 100 V), expect near 43.9 V, since DAC is at 4.393 V. Piezo Error = -9.5 V.
17-03-17 22:31:38.568 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.8 um, Read 10 ADC samples: Avg = 29804 (-131.0 uncal um), Error = 0.8 uncal um, Median = 29804 (-131.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29800 (-131.0 uncal um), Max = 29808 (-131.0 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 22:31:38.568 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29804, posNoise = 4, negNoise = 4
17-03-17 22:31:38.568 -07 000000610 INF: Z Motor: After move to -0.131792, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:31:38.568 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 22:31:38.568 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:31:38.568 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:31:38.568 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:31:38.568 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:31:38.568 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:31:38.568 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:31:38.568 -07 000000551 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:31:38.568 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:31:38.568 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:31:38.568 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:31:38.568 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:31:38.568 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:31:38.568 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:31:38.568 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:31:38.578 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 5 ms.
17-03-17 22:31:38.578 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:31:38.578 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 22:31:38.578 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 22:31:38.588 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 22:31:38.588 -07 000000551 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 22:31:38.588 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 454 454 218 218 28967 150\n [Camera]
17-03-17 22:31:38.788 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:31:39.238 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 646
17-03-17 22:31:39.238 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 646
17-03-17 22:31:39.248 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:31:39.248 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 646
17-03-17 22:31:39.248 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 646
17-03-17 22:31:39.248 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:31:39.248 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:31:39.248 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 22:31:39.248 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:31:39.248 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 22:31:39.438 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28967 839
17-03-17 22:31:39.588 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning grn on 989
17-03-17 22:31:39.618 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 372 ms.
17-03-17 22:31:39.618 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 372 ms.
17-03-17 22:31:39.618 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:31:39.618 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 22:31:39.618 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 22:31:39.618 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:31:39.628 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:31:39.628 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 22:31:39.628 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:31:39.638 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 22:31:39.798 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1207
17-03-17 22:31:39.798 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1207
17-03-17 22:31:39.808 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:31:39.808 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:31:39.808 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1207
17-03-17 22:31:39.808 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 1458343128, 0x0, 391868352) start.
17-03-17 22:31:39.808 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1207
17-03-17 22:31:39.808 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:31:39.808 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:31:39.808 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-17 22:31:39.998 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP 1399
17-03-17 22:31:39.998 -07 000000551 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:31:39.998 -07 000000610 INF: FPGA: 'CAMDBLSNAP 454 454 218 218 28967 150' command took 2 ms to send, 1401 ms to get response, and 1406 ms overall
17-03-17 22:31:39.998 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 22:31:39.998 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.056640625, Z-Position -0.131790570684179. ------
17-03-17 22:31:39.998 -07 000000486 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:31:39.998 -07 000000618 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.13813 mm
17-03-17 22:31:39.998 -07 000000618 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:31:39.998 -07 000000561 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-17 22:31:39.998 -07 000000561 INF: Y Motor: Moving to 64.8926 mm, started at 64.0566 mm, delta = 0.8360 mm
17-03-17 22:31:39.998 -07 000000424 INF: Z Motor: Entering MoveAbsStepped (DAC = 30173, sync = True, waitForSettling = False)
17-03-17 22:31:39.998 -07 000000424 INF: Z Motor: Moving to -0.138123 mm, started at -0.131791 mm, distance = -6.33 um
17-03-17 22:31:40.008 -07 000000551 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:31:40.008 -07 000000486 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 22:31:40.008 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:31:40.008 -07 000000551 INF: FPGA: Recv YRDPOS 131188
17-03-17 22:31:40.018 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:31:40.018 -07 000000561 INF: Y Motor: Encoder = 131188 = motor step 102490.6 = 64.0566 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:31:40.018 -07 000000561 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:31:40.018 -07 000000561 INF: Y Motor: Moving 1338 steps-12
17-03-17 22:31:40.018 -07 000000424 INF: FPGA: Xmit ZDACW 30173\n [Z Motor]
17-03-17 22:31:40.018 -07 000000551 INF: FPGA: Recv ZDACW
17-03-17 22:31:40.028 -07 000000486 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:31:40.028 -07 000000424 INF: FPGA: 'ZDACW 30173' command took 1 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:31:40.038 -07 000000561 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:31:40.048 -07 000000424 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:31:40.048 -07 000000551 INF: FPGA: Recv ZDACR 30173
17-03-17 22:31:40.058 -07 000000424 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:31:40.058 -07 000000424 INF: Z Motor: MoveAbsStepped took 50 ms (did NOT wait for settling yet))
17-03-17 22:31:40.198 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 1458343128, 0x0, 391868352) end. Duration was 395 ms.
17-03-17 22:31:40.198 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 22:31:40.198 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:31:40.208 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 394 ms.
17-03-17 22:31:40.208 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 22:31:40.208 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:31:40.208 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:31:40.208 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 22:31:40.208 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:31:40.218 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-17 22:31:40.228 -07 000000448 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:31:40.228 -07 000000486 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-17 22:31:40.408 -07 000000551 INF: FPGA: Recv YMVTILE
17-03-17 22:31:40.408 -07 000000561 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 22:31:40.448 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:31:40.458 -07 000000480 INF: FPGA: Recv YRDPOS 132871
17-03-17 22:31:40.458 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 22:31:40.458 -07 000000561 INF: Y Motor: Encoder = 132871 = motor step 103805.5 = 64.8784 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:31:40.458 -07 000000561 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-17 22:31:40.458 -07 000000561 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.836 mm, average velocity = 2.106 mm/sec
17-03-17 22:31:41.308 -07 000000486 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 64, FrontChillerTemperature: 4.003063,
17-03-17 22:31:41.408 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:31:41.408 -07 000000480 INF: FPGA: Recv YRDPOS 132871
17-03-17 22:31:41.418 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:31:41.418 -07 000000561 INF: Y Motor: Encoder = 132871 = motor step 103805.5 = 64.8784 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:31:41.438 -07 000000561 INF: Y Motor: After move to 64.892609, error = -0.014191, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:31:41.438 -07 000000561 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:31:41.438 -07 000000561 INF: Y Motor: Moved to 64.8784 after 1437 ms (table move)
17-03-17 22:31:41.438 -07 000000618 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138123 mm (DAC = 30173)
17-03-17 22:31:41.448 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:41.448 -07 000000431 INF: FPGA: Recv ZSGSRD 30793
17-03-17 22:31:41.458 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:31:41.458 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:41.458 -07 000000551 INF: FPGA: Recv ZSGSRD 30791
17-03-17 22:31:41.468 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:41.468 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:41.468 -07 000000486 INF: FPGA: Recv ZSGSRD 30798
17-03-17 22:31:41.478 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:41.478 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:41.478 -07 000000448 INF: FPGA: Recv ZSGSRD 30796
17-03-17 22:31:41.488 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:41.488 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:41.488 -07 000000431 INF: FPGA: Recv ZSGSRD 30793
17-03-17 22:31:41.498 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:41.498 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:41.498 -07 000000561 INF: FPGA: Recv ZSGSRD 30794
17-03-17 22:31:41.508 -07 000000618 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:41.508 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:41.508 -07 000000448 INF: FPGA: Recv ZSGSRD 30789
17-03-17 22:31:41.518 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:41.518 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:41.518 -07 000000561 INF: FPGA: Recv ZSGSRD 30788
17-03-17 22:31:41.528 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:41.528 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:41.528 -07 000000561 INF: FPGA: Recv ZSGSRD 30786
17-03-17 22:31:41.538 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:41.538 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:41.538 -07 000000448 INF: FPGA: Recv ZSGSRD 30789
17-03-17 22:31:41.548 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:41.548 -07 000000618 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:31:41.548 -07 000000626 INF: FPGA: Recv ZPIEZORD 26775
17-03-17 22:31:41.558 -07 000000618 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:41.558 -07 000000618 INF: Z Motor: Piezo is near 37.2 V (nominally 0 to 100 V), expect near 46.0 V, since DAC is at 4.604 V. Piezo Error = -8.8 V.
17-03-17 22:31:41.558 -07 000000618 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.1 um, Read 10 ADC samples: Avg = 30792 (-137.3 uncal um), Error = 0.8 uncal um, Median = 30792 (-137.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30786 (-137.3 uncal um), Max = 30798 (-137.4 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 22:31:41.558 -07 000000618 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30792, posNoise = 6, negNoise = 6
17-03-17 22:31:41.558 -07 000000618 INF: Z Motor: After move to -0.138123, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:31:41.558 -07 000000618 INF: Z Motor: Settle wait time = 1439 ms, measure time = 111 ms (allowed 150 ms), total time = 1550 ms
17-03-17 22:31:41.558 -07 000000618 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-17 22:31:41.598 -07 000000618 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1593 ms
17-03-17 22:31:41.598 -07 000000618 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:31:41.598 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:31:41.598 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:31:41.598 -07 000000486 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:31:41.598 -07 000000431 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:31:41.598 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:31:41.598 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:31:41.598 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 22:31:41.598 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:31:41.608 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:31:41.608 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:31:41.608 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 22:31:41.608 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 22:31:41.618 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:31:41.658 -07 000000448 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:31:41.858 -07 000000480 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:31:41.858 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:31:41.858 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:31:41.858 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1410451104, 0x0, 559484976) start.
17-03-17 22:31:41.898 -07 000000424 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:31:41.898 -07 000000431 INF: FPGA: Recv CAMSNAP
17-03-17 22:31:41.898 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 284 ms overall
17-03-17 22:31:41.978 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1410451104, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 22:31:41.978 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:31:41.978 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:31:41.978 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 22:31:41.978 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 120 ms.
17-03-17 22:31:41.988 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 63. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1016, R2=1046, Total=2062. Warn if over 250 bubbles per interval.
17-03-17 22:31:41.998 -07 000000424 INF: Autofocus start
17-03-17 22:31:41.998 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:31:41.998 -07 000000424 INF: MeasureProfile start
17-03-17 22:31:41.998 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:31:42.008 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 22:31:42.008 -07 000000618 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:31:42.008 -07 000000424 INF: MeasureProfile done
17-03-17 22:31:42.008 -07 000000424 INF: X=87  Z correction [um]=0.3945555
17-03-17 22:31:42.008 -07 000000424 INF: Autofocus finished
17-03-17 22:31:42.208 -07 000000431 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:31:42.208 -07 000000618 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:31:42.208 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87841796875, Z-position -0.138137692280238. ----------
17-03-17 22:31:42.208 -07 000000610 INF: Cycle	64	Tile	7	Exposure Settings		A	454	G	218	T	218	C	454
17-03-17 22:31:42.218 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28772, sync = True, waitForSettling = True)
17-03-17 22:31:42.218 -07 000000610 INF: Z Motor: Moving to -0.131710 mm, started at -0.138138 mm, distance = 6.43 um
17-03-17 22:31:42.218 -07 000000610 INF: FPGA: Xmit ZDACW 28772\n [Z Motor]
17-03-17 22:31:42.218 -07 000000448 INF: FPGA: Recv ZDACW
17-03-17 22:31:42.228 -07 000000610 INF: FPGA: 'ZDACW 28772' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:31:42.228 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:31:42.228 -07 000000618 INF: FPGA: Recv ZDACR 28772
17-03-17 22:31:42.238 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:42.238 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:31:42.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:42.388 -07 000000424 INF: FPGA: Recv ZSGSRD 29788
17-03-17 22:31:42.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:31:42.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:42.398 -07 000000480 INF: FPGA: Recv ZSGSRD 29791
17-03-17 22:31:42.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:42.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:42.408 -07 000000626 INF: FPGA: Recv ZSGSRD 29792
17-03-17 22:31:42.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:42.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:42.418 -07 000000480 INF: FPGA: Recv ZSGSRD 29789
17-03-17 22:31:42.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:42.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:42.428 -07 000000626 INF: FPGA: Recv ZSGSRD 29791
17-03-17 22:31:42.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:42.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:42.438 -07 000000626 INF: FPGA: Recv ZSGSRD 29794
17-03-17 22:31:42.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:42.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:42.448 -07 000000486 INF: FPGA: Recv ZSGSRD 29792
17-03-17 22:31:42.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:42.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:42.458 -07 000000626 INF: FPGA: Recv ZSGSRD 29795
17-03-17 22:31:42.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:42.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:42.468 -07 000000424 INF: FPGA: Recv ZSGSRD 29797
17-03-17 22:31:42.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:42.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:42.478 -07 000000618 INF: FPGA: Recv ZSGSRD 29787
17-03-17 22:31:42.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:42.488 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:31:42.488 -07 000000424 INF: FPGA: Recv ZPIEZORD 25438
17-03-17 22:31:42.498 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:42.498 -07 000000610 INF: Z Motor: Piezo is near 34.3 V (nominally 0 to 100 V), expect near 43.9 V, since DAC is at 4.390 V. Piezo Error = -9.6 V.
17-03-17 22:31:42.498 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.7 um, Read 10 ADC samples: Avg = 29792 (-130.9 uncal um), Error = 0.8 uncal um, Median = 29792 (-130.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29787 (-130.9 uncal um), Max = 29797 (-131.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 22:31:42.498 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29792, posNoise = 5, negNoise = 5
17-03-17 22:31:42.498 -07 000000610 INF: Z Motor: After move to -0.131710, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:31:42.498 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 22:31:42.498 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:31:42.498 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:31:42.498 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:31:42.498 -07 000000486 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:31:42.498 -07 000000551 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:31:42.498 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:31:42.498 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:31:42.498 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:31:42.498 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:31:42.498 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:31:42.498 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:31:42.498 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:31:42.508 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 22:31:42.508 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:31:42.508 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:31:42.508 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:31:42.518 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 22:31:42.518 -07 000000551 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 22:31:42.518 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 22:31:42.518 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 22:31:42.518 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 454 454 218 218 28949 150\n [Camera]
17-03-17 22:31:42.718 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:31:43.178 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 646
17-03-17 22:31:43.178 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 646
17-03-17 22:31:43.178 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:31:43.178 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:31:43.178 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start.
17-03-17 22:31:43.178 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 646
17-03-17 22:31:43.178 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 646
17-03-17 22:31:43.178 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:31:43.178 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:31:43.178 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) start.
17-03-17 22:31:43.368 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28949 839
17-03-17 22:31:43.518 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning grn on 989
17-03-17 22:31:43.568 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 391 ms.
17-03-17 22:31:43.568 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 22:31:43.568 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:31:43.568 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) end. Duration was 390 ms.
17-03-17 22:31:43.568 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 22:31:43.568 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:31:43.568 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:31:43.568 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 22:31:43.578 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 22:31:43.578 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-17 22:31:43.738 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1207
17-03-17 22:31:43.738 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1207
17-03-17 22:31:43.738 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:31:43.858 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1207
17-03-17 22:31:43.858 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1207
17-03-17 22:31:43.858 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:31:43.858 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:31:43.858 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-17 22:31:43.868 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:31:43.868 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 22:31:43.928 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP 1400
17-03-17 22:31:43.928 -07 000000480 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:31:43.928 -07 000000610 INF: FPGA: 'CAMDBLSNAP 454 454 218 218 28949 150' command took 2 ms to send, 1404 ms to get response, and 1409 ms overall
17-03-17 22:31:43.928 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 22:31:43.928 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.87841796875, Z-Position -0.131713480138477. ------
17-03-17 22:31:43.928 -07 000000486 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:31:43.928 -07 000000551 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.13798 mm
17-03-17 22:31:43.928 -07 000000551 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:31:43.938 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:31:43.938 -07 000000480 INF: Z Motor: Entering MoveAbsStepped (DAC = 30141, sync = True, waitForSettling = False)
17-03-17 22:31:43.938 -07 000000480 INF: Z Motor: Moving to -0.137977 mm, started at -0.131713 mm, distance = -6.26 um
17-03-17 22:31:43.938 -07 000000480 INF: FPGA: Xmit ZDACW 30141\n [Z Motor]
17-03-17 22:31:43.938 -07 000000486 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 22:31:43.938 -07 000000448 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-17 22:31:43.938 -07 000000448 INF: Y Motor: Moving to 65.7226 mm, started at 64.8784 mm, delta = 0.8442 mm
17-03-17 22:31:43.938 -07 000000431 INF: FPGA: Recv ZDACW
17-03-17 22:31:43.948 -07 000000480 INF: FPGA: 'ZDACW 30141' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:31:43.948 -07 000000480 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:31:43.948 -07 000000431 INF: FPGA: Recv ZDACR 30141
17-03-17 22:31:43.958 -07 000000480 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:43.958 -07 000000480 INF: Z Motor: MoveAbsStepped took 17 ms (did NOT wait for settling yet))
17-03-17 22:31:43.958 -07 000000486 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:31:43.968 -07 000000448 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:31:43.968 -07 000000480 INF: FPGA: Recv YRDPOS 132871
17-03-17 22:31:43.978 -07 000000448 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 36 ms overall
17-03-17 22:31:43.978 -07 000000448 INF: Y Motor: Encoder = 132871 = motor step 103805.5 = 64.8784 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:31:43.978 -07 000000448 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:31:43.978 -07 000000448 INF: Y Motor: Moving 1351 steps-29
17-03-17 22:31:43.978 -07 000000448 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:31:44.158 -07 000000576 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:31:44.158 -07 000000486 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 219 ms overall
17-03-17 22:31:44.258 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 401 ms.
17-03-17 22:31:44.258 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 22:31:44.258 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:31:44.268 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:31:44.268 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 529 ms.
17-03-17 22:31:44.268 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 398 ms.
17-03-17 22:31:44.268 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 22:31:44.268 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:31:44.268 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:31:44.278 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-17 22:31:44.358 -07 000000576 INF: FPGA: Recv YMVTILE
17-03-17 22:31:44.358 -07 000000448 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 380 ms overall
17-03-17 22:31:44.398 -07 000000448 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:31:44.398 -07 000000424 INF: FPGA: Recv YRDPOS 134581
17-03-17 22:31:44.408 -07 000000448 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:44.408 -07 000000448 INF: Y Motor: Encoder = 134581 = motor step 105141.4 = 65.7134 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:31:44.408 -07 000000448 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-17 22:31:44.408 -07 000000448 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 381 ms, distance = 0.844 mm, average velocity = 2.216 mm/sec
17-03-17 22:31:45.358 -07 000000448 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:31:45.358 -07 000000576 INF: FPGA: Recv YRDPOS 134581
17-03-17 22:31:45.368 -07 000000448 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:31:45.368 -07 000000448 INF: Y Motor: Encoder = 134581 = motor step 105141.4 = 65.7134 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:31:45.388 -07 000000448 INF: Y Motor: After move to 65.722610, error = -0.009232, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:31:45.388 -07 000000448 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:31:45.388 -07 000000448 INF: Y Motor: Moved to 65.7134 after 1456 ms (table move)
17-03-17 22:31:45.398 -07 000000551 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137977 mm (DAC = 30141)
17-03-17 22:31:45.398 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:45.398 -07 000000576 INF: FPGA: Recv ZSGSRD 30780
17-03-17 22:31:45.408 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 22:31:45.408 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:45.408 -07 000000424 INF: FPGA: Recv ZSGSRD 30768
17-03-17 22:31:45.418 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:45.418 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:45.418 -07 000000431 INF: FPGA: Recv ZSGSRD 30769
17-03-17 22:31:45.428 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:45.428 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:45.428 -07 000000618 INF: FPGA: Recv ZSGSRD 30765
17-03-17 22:31:45.438 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:45.438 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:45.438 -07 000000627 INF: FPGA: Recv ZSGSRD 30767
17-03-17 22:31:45.448 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:45.448 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:45.448 -07 000000424 INF: FPGA: Recv ZSGSRD 30764
17-03-17 22:31:45.458 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:45.458 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:45.458 -07 000000431 INF: FPGA: Recv ZSGSRD 30766
17-03-17 22:31:45.468 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:45.468 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:45.468 -07 000000561 INF: FPGA: Recv ZSGSRD 30776
17-03-17 22:31:45.478 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:45.478 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:45.478 -07 000000576 INF: FPGA: Recv ZSGSRD 30768
17-03-17 22:31:45.488 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:45.488 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:45.488 -07 000000424 INF: FPGA: Recv ZSGSRD 30771
17-03-17 22:31:45.498 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:45.498 -07 000000551 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:31:45.498 -07 000000626 INF: FPGA: Recv ZPIEZORD 26776
17-03-17 22:31:45.508 -07 000000551 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:45.508 -07 000000551 INF: Z Motor: Piezo is near 37.2 V (nominally 0 to 100 V), expect near 46.0 V, since DAC is at 4.599 V. Piezo Error = -8.8 V.
17-03-17 22:31:45.508 -07 000000551 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.0 um, Read 10 ADC samples: Avg = 30769 (-137.2 uncal um), Error = 0.8 uncal um, Median = 30768 (-137.2 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 30764 (-137.2 uncal um), Max = 30780 (-137.3 uncal um), Pos Noise = 11 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 22:31:45.508 -07 000000551 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30769, posNoise = 11, negNoise = 5
17-03-17 22:31:45.508 -07 000000551 INF: Z Motor: After move to -0.137977, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:31:45.508 -07 000000551 INF: Z Motor: Settle wait time = 1461 ms, measure time = 107 ms (allowed 150 ms), total time = 1568 ms
17-03-17 22:31:45.508 -07 000000551 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 22:31:45.558 -07 000000551 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1620 ms
17-03-17 22:31:45.558 -07 000000551 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:31:45.558 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:31:45.558 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:31:45.558 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:31:45.558 -07 000000476 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:31:45.558 -07 000000627 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:31:45.558 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:31:45.558 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:31:45.558 -07 000000627 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:31:45.568 -07 000000627 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:31:45.568 -07 000000627 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:31:45.578 -07 000000627 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 22:31:45.578 -07 000000627 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 22:31:45.578 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:31:45.628 -07 000000618 INF: FPGA: Recv @CAMSNAP turning led on 42
17-03-17 22:31:45.828 -07 000000431 INF: FPGA: Recv @CAMSNAP img rdy 242
17-03-17 22:31:45.828 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 242
17-03-17 22:31:45.828 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:31:45.828 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 22:31:45.868 -07 000000551 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:31:45.868 -07 000000476 INF: FPGA: Recv CAMSNAP
17-03-17 22:31:45.868 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 285 ms overall
17-03-17 22:31:45.958 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 22:31:45.958 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:31:45.958 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:31:45.958 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-17 22:31:45.968 -07 000000476 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:31:45.968 -07 000000424 INF: Autofocus start
17-03-17 22:31:45.968 -07 000000424 INF: MeasureProfile start
17-03-17 22:31:45.968 -07 000000551 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:31:45.978 -07 000000476 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 22:31:45.978 -07 000000476 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:31:45.978 -07 000000424 INF: MeasureProfile done
17-03-17 22:31:45.978 -07 000000424 INF: X=64  Z correction [um]=0.2839165
17-03-17 22:31:45.978 -07 000000424 INF: Autofocus finished
17-03-17 22:31:46.178 -07 000000561 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:31:46.178 -07 000000476 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:31:46.178 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.71337890625, Z-position -0.137989935400978. ----------
17-03-17 22:31:46.178 -07 000000610 INF: Cycle	64	Tile	8	Exposure Settings		A	454	G	218	T	218	C	454
17-03-17 22:31:46.188 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28716, sync = True, waitForSettling = True)
17-03-17 22:31:46.188 -07 000000610 INF: Z Motor: Moving to -0.131453 mm, started at -0.137990 mm, distance = 6.54 um
17-03-17 22:31:46.188 -07 000000610 INF: FPGA: Xmit ZDACW 28716\n [Z Motor]
17-03-17 22:31:46.188 -07 000000618 INF: FPGA: Recv ZDACW
17-03-17 22:31:46.198 -07 000000610 INF: FPGA: 'ZDACW 28716' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:31:46.198 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:31:46.198 -07 000000627 INF: FPGA: Recv ZDACR 28716
17-03-17 22:31:46.208 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:46.208 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:31:46.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:46.358 -07 000000551 INF: FPGA: Recv ZSGSRD 29761
17-03-17 22:31:46.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:31:46.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:46.368 -07 000000627 INF: FPGA: Recv ZSGSRD 29751
17-03-17 22:31:46.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:46.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:46.378 -07 000000576 INF: FPGA: Recv ZSGSRD 29752
17-03-17 22:31:46.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:46.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:46.388 -07 000000627 INF: FPGA: Recv ZSGSRD 29748
17-03-17 22:31:46.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:46.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:46.398 -07 000000424 INF: FPGA: Recv ZSGSRD 29755
17-03-17 22:31:46.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:46.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:46.408 -07 000000561 INF: FPGA: Recv ZSGSRD 29755
17-03-17 22:31:46.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:46.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:46.418 -07 000000561 INF: FPGA: Recv ZSGSRD 29752
17-03-17 22:31:46.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:46.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:46.428 -07 000000626 INF: FPGA: Recv ZSGSRD 29755
17-03-17 22:31:46.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:46.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:46.438 -07 000000626 INF: FPGA: Recv ZSGSRD 29748
17-03-17 22:31:46.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:46.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:46.448 -07 000000561 INF: FPGA: Recv ZSGSRD 29755
17-03-17 22:31:46.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:46.458 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:31:46.458 -07 000000424 INF: FPGA: Recv ZPIEZORD 25447
17-03-17 22:31:46.468 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:46.468 -07 000000610 INF: Z Motor: Piezo is near 34.4 V (nominally 0 to 100 V), expect near 43.8 V, since DAC is at 4.382 V. Piezo Error = -9.5 V.
17-03-17 22:31:46.468 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.5 um, Read 10 ADC samples: Avg = 29753 (-130.7 uncal um), Error = 0.8 uncal um, Median = 29754 (-130.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29748 (-130.6 uncal um), Max = 29761 (-130.7 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 22:31:46.468 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29753, posNoise = 8, negNoise = 5
17-03-17 22:31:46.468 -07 000000610 INF: Z Motor: After move to -0.131453, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:31:46.468 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 22:31:46.468 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:31:46.468 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:31:46.468 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:31:46.468 -07 000000551 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:31:46.468 -07 000000476 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:31:46.468 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:31:46.468 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:31:46.468 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:31:46.468 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:31:46.468 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:31:46.468 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:31:46.468 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:31:46.478 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 22:31:46.478 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:31:46.478 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 22:31:46.478 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:31:46.488 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 22:31:46.488 -07 000000551 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 22:31:46.488 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 22:31:46.488 -07 000000476 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 22:31:46.488 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 454 454 218 218 28893 150\n [Camera]
17-03-17 22:31:46.668 -07 000000551 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 64, FrontChillerTemperature: 3.986717,
17-03-17 22:31:46.688 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:31:46.978 -07 000000551 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:31:46.978 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 63. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1016, R2=1046, Total=2062. Warn if over 250 bubbles per interval.
17-03-17 22:31:47.138 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 646
17-03-17 22:31:47.138 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 646
17-03-17 22:31:47.148 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:31:47.148 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 646
17-03-17 22:31:47.148 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 646
17-03-17 22:31:47.148 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:31:47.148 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:31:47.148 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 1458343128, 0x0, 418435064) start.
17-03-17 22:31:47.148 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:31:47.148 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 22:31:47.338 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28893 839
17-03-17 22:31:47.488 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning grn on 989
17-03-17 22:31:47.528 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 379 ms.
17-03-17 22:31:47.528 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-17 22:31:47.528 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:31:47.528 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 1458343128, 0x0, 418435064) end. Duration was 382 ms.
17-03-17 22:31:47.528 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-17 22:31:47.528 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:31:47.528 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:31:47.528 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 22:31:47.538 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:31:47.538 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 22:31:47.708 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1207
17-03-17 22:31:47.708 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1207
17-03-17 22:31:47.708 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:31:47.818 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1207
17-03-17 22:31:47.818 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1207
17-03-17 22:31:47.818 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:31:47.828 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:31:47.828 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 22:31:47.828 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:31:47.828 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 22:31:47.898 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP 1399
17-03-17 22:31:47.898 -07 000000618 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:31:47.898 -07 000000610 INF: FPGA: 'CAMDBLSNAP 454 454 218 218 28893 150' command took 2 ms to send, 1402 ms to get response, and 1407 ms overall
17-03-17 22:31:47.898 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 22:31:47.898 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.71337890625, Z-Position -0.131462935864949. ------
17-03-17 22:31:47.898 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:31:47.898 -07 000000626 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.13783 mm
17-03-17 22:31:47.898 -07 000000626 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:31:47.908 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:31:47.908 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 22:31:47.908 -07 000000561 INF: Z Motor: Entering MoveAbsStepped (DAC = 30109, sync = True, waitForSettling = False)
17-03-17 22:31:47.908 -07 000000561 INF: Z Motor: Moving to -0.137830 mm, started at -0.131463 mm, distance = -6.37 um
17-03-17 22:31:47.908 -07 000000561 INF: FPGA: Xmit ZDACW 30109\n [Z Motor]
17-03-17 22:31:47.908 -07 000000627 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-17 22:31:47.908 -07 000000627 INF: Y Motor: Moving to 66.5526 mm, started at 65.7134 mm, delta = 0.8392 mm
17-03-17 22:31:47.908 -07 000000431 INF: FPGA: Recv ZDACW
17-03-17 22:31:47.918 -07 000000561 INF: FPGA: 'ZDACW 30109' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:31:47.918 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:31:47.918 -07 000000476 INF: FPGA: Recv YRDPOS 134582
17-03-17 22:31:47.928 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-17 22:31:47.928 -07 000000627 INF: Y Motor: Encoder = 134582 = motor step 105142.2 = 65.7139 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:31:47.928 -07 000000576 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:31:47.928 -07 000000627 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:31:47.928 -07 000000627 INF: Y Motor: Moving 1342 steps-19
17-03-17 22:31:47.938 -07 000000561 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:31:47.938 -07 000000448 INF: FPGA: Recv ZDACR 30109
17-03-17 22:31:47.948 -07 000000627 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:31:47.948 -07 000000561 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:31:47.948 -07 000000561 INF: Z Motor: MoveAbsStepped took 38 ms (did NOT wait for settling yet))
17-03-17 22:31:48.128 -07 000000486 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:31:48.128 -07 000000576 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-17 22:31:48.218 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 388 ms.
17-03-17 22:31:48.218 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 22:31:48.218 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:31:48.218 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 394 ms.
17-03-17 22:31:48.218 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 22:31:48.218 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:31:48.218 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:31:48.218 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 517 ms.
17-03-17 22:31:48.218 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:31:48.228 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-17 22:31:48.318 -07 000000448 INF: FPGA: Recv YMVTILE
17-03-17 22:31:48.318 -07 000000627 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 389 ms overall
17-03-17 22:31:48.358 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:31:48.368 -07 000000551 INF: FPGA: Recv YRDPOS 136271
17-03-17 22:31:48.368 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:31:48.368 -07 000000627 INF: Y Motor: Encoder = 136271 = motor step 106461.7 = 66.5386 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:31:48.368 -07 000000627 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-17 22:31:48.368 -07 000000627 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 389 ms, distance = 0.839 mm, average velocity = 2.157 mm/sec
17-03-17 22:31:49.318 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:31:49.318 -07 000000551 INF: FPGA: Recv YRDPOS 136271
17-03-17 22:31:49.328 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:31:49.328 -07 000000627 INF: Y Motor: Encoder = 136271 = motor step 106461.7 = 66.5386 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:31:49.348 -07 000000627 INF: Y Motor: After move to 66.552605, error = -0.014030, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:31:49.348 -07 000000627 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:31:49.348 -07 000000627 INF: Y Motor: Moved to 66.5386 after 1444 ms (table move)
17-03-17 22:31:49.358 -07 000000626 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137830 mm (DAC = 30109)
17-03-17 22:31:49.358 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:49.358 -07 000000576 INF: FPGA: Recv ZSGSRD 30744
17-03-17 22:31:49.368 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:49.368 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:49.368 -07 000000551 INF: FPGA: Recv ZSGSRD 30745
17-03-17 22:31:49.378 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:49.378 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:49.378 -07 000000476 INF: FPGA: Recv ZSGSRD 30752
17-03-17 22:31:49.388 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:49.388 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:49.388 -07 000000480 INF: FPGA: Recv ZSGSRD 30745
17-03-17 22:31:49.398 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:49.398 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:49.398 -07 000000576 INF: FPGA: Recv ZSGSRD 30750
17-03-17 22:31:49.408 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:49.408 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:49.408 -07 000000480 INF: FPGA: Recv ZSGSRD 30744
17-03-17 22:31:49.418 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:49.418 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:49.418 -07 000000618 INF: FPGA: Recv ZSGSRD 30736
17-03-17 22:31:49.428 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:49.428 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:49.428 -07 000000476 INF: FPGA: Recv ZSGSRD 30745
17-03-17 22:31:49.438 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:49.438 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:49.438 -07 000000618 INF: FPGA: Recv ZSGSRD 30745
17-03-17 22:31:49.448 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:49.448 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:49.448 -07 000000476 INF: FPGA: Recv ZSGSRD 30752
17-03-17 22:31:49.458 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:49.458 -07 000000626 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:31:49.458 -07 000000448 INF: FPGA: Recv ZPIEZORD 26746
17-03-17 22:31:49.468 -07 000000626 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:49.468 -07 000000626 INF: Z Motor: Piezo is near 37.1 V (nominally 0 to 100 V), expect near 45.9 V, since DAC is at 4.594 V. Piezo Error = -8.8 V.
17-03-17 22:31:49.468 -07 000000626 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.8 um, Read 10 ADC samples: Avg = 30746 (-137.0 uncal um), Error = 0.8 uncal um, Median = 30745 (-137.0 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 30736 (-137.0 uncal um), Max = 30752 (-137.1 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-17 22:31:49.468 -07 000000626 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30746, posNoise = 6, negNoise = 10
17-03-17 22:31:49.468 -07 000000626 INF: Z Motor: After move to -0.137830, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:31:49.468 -07 000000626 INF: Z Motor: Settle wait time = 1449 ms, measure time = 110 ms (allowed 150 ms), total time = 1559 ms
17-03-17 22:31:49.468 -07 000000626 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-17 22:31:49.508 -07 000000626 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1602 ms
17-03-17 22:31:49.508 -07 000000626 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:31:49.508 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:31:49.508 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:31:49.508 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:31:49.508 -07 000000551 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:31:49.508 -07 000000431 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:31:49.508 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:31:49.508 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:31:49.508 -07 000000431 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:31:49.518 -07 000000431 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 22:31:49.518 -07 000000431 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:31:49.528 -07 000000431 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 22:31:49.528 -07 000000431 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-17 22:31:49.528 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:31:49.578 -07 000000012 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:31:49.778 -07 000000561 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:31:49.778 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:31:49.778 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:31:49.778 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 22:31:49.818 -07 000000480 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:31:49.818 -07 000000424 INF: FPGA: Recv CAMSNAP
17-03-17 22:31:49.818 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 273 ms to get response, and 284 ms overall
17-03-17 22:31:49.898 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 22:31:49.898 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:31:49.898 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 22:31:49.898 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 22:31:49.918 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:31:49.918 -07 000000480 INF: Autofocus start
17-03-17 22:31:49.918 -07 000000480 INF: MeasureProfile start
17-03-17 22:31:49.918 -07 000000476 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:31:49.928 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 22:31:49.928 -07 000000626 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:31:49.928 -07 000000480 INF: MeasureProfile done
17-03-17 22:31:49.928 -07 000000480 INF: X=16  Z correction [um]=0.0530179
17-03-17 22:31:49.928 -07 000000480 INF: Autofocus finished
17-03-17 22:31:50.128 -07 000000476 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:31:50.128 -07 000000626 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 203 ms overall
17-03-17 22:31:50.128 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.53857421875, Z-position -0.137842178521717. ----------
17-03-17 22:31:50.138 -07 000000610 INF: Cycle	64	Tile	9	Exposure Settings		A	454	G	218	T	218	C	454
17-03-17 22:31:50.138 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28633, sync = True, waitForSettling = True)
17-03-17 22:31:50.138 -07 000000610 INF: Z Motor: Moving to -0.131073 mm, started at -0.137842 mm, distance = 6.77 um
17-03-17 22:31:50.138 -07 000000610 INF: FPGA: Xmit ZDACW 28633\n [Z Motor]
17-03-17 22:31:50.138 -07 000000476 INF: FPGA: Recv ZDACW
17-03-17 22:31:50.148 -07 000000610 INF: FPGA: 'ZDACW 28633' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:31:50.148 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:31:50.148 -07 000000012 INF: FPGA: Recv ZDACR 28633
17-03-17 22:31:50.158 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:50.158 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:31:50.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:50.308 -07 000000551 INF: FPGA: Recv ZSGSRD 29690
17-03-17 22:31:50.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:50.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:50.318 -07 000000627 INF: FPGA: Recv ZSGSRD 29694
17-03-17 22:31:50.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:50.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:50.328 -07 000000476 INF: FPGA: Recv ZSGSRD 29694
17-03-17 22:31:50.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:50.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:50.338 -07 000000424 INF: FPGA: Recv ZSGSRD 29691
17-03-17 22:31:50.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:50.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:50.348 -07 000000551 INF: FPGA: Recv ZSGSRD 29694
17-03-17 22:31:50.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:50.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:50.358 -07 000000480 INF: FPGA: Recv ZSGSRD 29695
17-03-17 22:31:50.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:50.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:50.368 -07 000000448 INF: FPGA: Recv ZSGSRD 29696
17-03-17 22:31:50.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:50.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:50.378 -07 000000012 INF: FPGA: Recv ZSGSRD 29692
17-03-17 22:31:50.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:50.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:50.388 -07 000000462 INF: FPGA: Recv ZSGSRD 29689
17-03-17 22:31:50.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:50.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:50.398 -07 000000627 INF: FPGA: Recv ZSGSRD 29701
17-03-17 22:31:50.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:50.408 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:31:50.408 -07 000000480 INF: FPGA: Recv ZPIEZORD 25370
17-03-17 22:31:50.418 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:50.418 -07 000000610 INF: Z Motor: Piezo is near 34.2 V (nominally 0 to 100 V), expect near 43.7 V, since DAC is at 4.369 V. Piezo Error = -9.5 V.
17-03-17 22:31:50.418 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.1 um, Read 10 ADC samples: Avg = 29694 (-130.3 uncal um), Error = 0.8 uncal um, Median = 29694 (-130.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29689 (-130.3 uncal um), Max = 29701 (-130.3 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 22:31:50.418 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29694, posNoise = 7, negNoise = 5
17-03-17 22:31:50.418 -07 000000610 INF: Z Motor: After move to -0.131073, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:31:50.418 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 22:31:50.418 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:31:50.418 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:31:50.418 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:31:50.418 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:31:50.418 -07 000000448 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:31:50.418 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:31:50.418 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:31:50.418 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:31:50.418 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 22:31:50.418 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:31:50.418 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:31:50.418 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:31:50.428 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:31:50.428 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:31:50.428 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:31:50.428 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:31:50.438 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 22:31:50.438 -07 000000448 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 22:31:50.438 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 22:31:50.438 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 22:31:50.438 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 454 454 218 218 28810 150\n [Camera]
17-03-17 22:31:50.638 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:31:51.088 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 646
17-03-17 22:31:51.088 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 646
17-03-17 22:31:51.088 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:31:51.088 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:31:51.088 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 1458343128, 0x0, 391868352) start.
17-03-17 22:31:51.098 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 646
17-03-17 22:31:51.098 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 646
17-03-17 22:31:51.098 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:31:51.098 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:31:51.098 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-17 22:31:51.288 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28810 839
17-03-17 22:31:51.438 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning grn on 989
17-03-17 22:31:51.478 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 1458343128, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 22:31:51.478 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 22:31:51.478 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:31:51.478 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 22:31:51.478 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 22:31:51.478 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:31:51.478 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:31:51.478 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 22:31:51.588 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 114 ms.
17-03-17 22:31:51.598 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 501 ms.
17-03-17 22:31:51.648 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1207
17-03-17 22:31:51.648 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1207
17-03-17 22:31:51.658 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:31:51.658 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1207
17-03-17 22:31:51.658 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1207
17-03-17 22:31:51.658 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:31:51.658 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 22:31:51.658 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:31:51.658 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:31:51.658 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 22:31:51.848 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP 1400
17-03-17 22:31:51.848 -07 000000551 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:31:51.848 -07 000000610 INF: FPGA: 'CAMDBLSNAP 454 454 218 218 28810 150' command took 2 ms to send, 1401 ms to get response, and 1407 ms overall
17-03-17 22:31:51.848 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 22:31:51.848 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.53857421875, Z-Position -0.131083907348585. ------
17-03-17 22:31:51.848 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:31:51.848 -07 000000476 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.13780 mm
17-03-17 22:31:51.848 -07 000000476 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:31:51.848 -07 000000431 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-17 22:31:51.858 -07 000000431 INF: Y Motor: Moving to 67.3826 mm, started at 66.5386 mm, delta = 0.8440 mm
17-03-17 22:31:51.858 -07 000000448 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:31:51.858 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 22:31:51.858 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:31:51.858 -07 000000551 INF: Z Motor: Entering MoveAbsStepped (DAC = 30102, sync = True, waitForSettling = False)
17-03-17 22:31:51.858 -07 000000551 INF: Z Motor: Moving to -0.137798 mm, started at -0.131084 mm, distance = -6.71 um
17-03-17 22:31:51.858 -07 000000448 INF: FPGA: Recv YRDPOS 136272
17-03-17 22:31:51.868 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:31:51.868 -07 000000431 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:31:51.868 -07 000000480 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:31:51.868 -07 000000431 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:31:51.868 -07 000000431 INF: Y Motor: Moving 1350 steps-29
17-03-17 22:31:51.878 -07 000000551 INF: FPGA: Xmit ZDACW 30102\n [Z Motor]
17-03-17 22:31:51.878 -07 000000618 INF: FPGA: Recv ZDACW
17-03-17 22:31:51.888 -07 000000431 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:31:51.888 -07 000000551 INF: FPGA: 'ZDACW 30102' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-17 22:31:51.898 -07 000000551 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:31:51.898 -07 000000627 INF: FPGA: Recv ZDACR 30102
17-03-17 22:31:51.908 -07 000000551 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:31:51.908 -07 000000551 INF: Z Motor: MoveAbsStepped took 47 ms (did NOT wait for settling yet))
17-03-17 22:31:51.978 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:31:51.978 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 63. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1016, R2=1046, Total=2062. Warn if over 250 bubbles per interval.
17-03-17 22:31:52.028 -07 000000561 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 64, FrontChillerTemperature: 3.986717,
17-03-17 22:31:52.058 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 398 ms.
17-03-17 22:31:52.058 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 22:31:52.058 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:31:52.058 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:31:52.058 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-17 22:31:52.058 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 402 ms.
17-03-17 22:31:52.058 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 22:31:52.058 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:31:52.068 -07 000000551 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:31:52.068 -07 000000480 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 210 ms overall
17-03-17 22:31:52.068 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:31:52.078 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-17 22:31:52.258 -07 000000448 INF: FPGA: Recv YMVTILE
17-03-17 22:31:52.258 -07 000000431 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 393 ms overall
17-03-17 22:31:52.308 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:31:52.308 -07 000000627 INF: FPGA: Recv YRDPOS 137977
17-03-17 22:31:52.318 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:52.318 -07 000000431 INF: Y Motor: Encoder = 137977 = motor step 107794.5 = 67.3716 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:31:52.318 -07 000000431 INF: Y Motor: Position error before settling (table move) = -23 encoder counts (-0.011 mm)
17-03-17 22:31:52.318 -07 000000431 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 393 ms, distance = 0.844 mm, average velocity = 2.148 mm/sec
17-03-17 22:31:53.268 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:31:53.268 -07 000000618 INF: FPGA: Recv YRDPOS 137977
17-03-17 22:31:53.278 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:31:53.278 -07 000000431 INF: Y Motor: Encoder = 137977 = motor step 107794.5 = 67.3716 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:31:53.298 -07 000000431 INF: Y Motor: After move to 67.382607, error = -0.011024, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:31:53.298 -07 000000431 INF: Y Motor: Position error after settling (table move) = -23 encoder counts (-0.011 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:31:53.298 -07 000000431 INF: Y Motor: Moved to 67.3716 after 1445 ms (table move)
17-03-17 22:31:53.308 -07 000000476 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137798 mm (DAC = 30102)
17-03-17 22:31:53.308 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:53.308 -07 000000480 INF: FPGA: Recv ZSGSRD 30747
17-03-17 22:31:53.318 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:53.318 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:53.318 -07 000000431 INF: FPGA: Recv ZSGSRD 30742
17-03-17 22:31:53.328 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:53.328 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:53.328 -07 000000561 INF: FPGA: Recv ZSGSRD 30730
17-03-17 22:31:53.338 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:53.338 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:53.338 -07 000000448 INF: FPGA: Recv ZSGSRD 30740
17-03-17 22:31:53.348 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:53.348 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:53.348 -07 000000551 INF: FPGA: Recv ZSGSRD 30737
17-03-17 22:31:53.358 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:53.358 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:53.358 -07 000000618 INF: FPGA: Recv ZSGSRD 30742
17-03-17 22:31:53.368 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:53.368 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:53.368 -07 000000480 INF: FPGA: Recv ZSGSRD 30728
17-03-17 22:31:53.378 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:53.378 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:53.378 -07 000000627 INF: FPGA: Recv ZSGSRD 30737
17-03-17 22:31:53.388 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:53.388 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:53.388 -07 000000561 INF: FPGA: Recv ZSGSRD 30745
17-03-17 22:31:53.398 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:53.398 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:53.398 -07 000000551 INF: FPGA: Recv ZSGSRD 30747
17-03-17 22:31:53.408 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:53.408 -07 000000476 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:31:53.408 -07 000000486 INF: FPGA: Recv ZPIEZORD 26761
17-03-17 22:31:53.418 -07 000000476 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:53.418 -07 000000476 INF: Z Motor: Piezo is near 37.2 V (nominally 0 to 100 V), expect near 45.9 V, since DAC is at 4.593 V. Piezo Error = -8.8 V.
17-03-17 22:31:53.418 -07 000000476 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.8 um, Read 10 ADC samples: Avg = 30740 (-137.0 uncal um), Error = 0.8 uncal um, Median = 30741 (-137.0 uncal um), StdDev = 7 (0.0 uncal um), Range = 19 (0.1 uncal um), Min = 30728 (-136.9 uncal um), Max = 30747 (-137.1 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 12 (0.1 uncal um)
17-03-17 22:31:53.418 -07 000000476 INF: Z Motor: ADC noise = 12, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30740, posNoise = 7, negNoise = 12
17-03-17 22:31:53.418 -07 000000476 INF: Z Motor: After move to -0.137798, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:31:53.418 -07 000000476 INF: Z Motor: Settle wait time = 1447 ms, measure time = 111 ms (allowed 150 ms), total time = 1558 ms
17-03-17 22:31:53.418 -07 000000476 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-17 22:31:53.458 -07 000000476 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1603 ms
17-03-17 22:31:53.458 -07 000000476 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:31:53.458 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:31:53.458 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:31:53.458 -07 000000476 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:31:53.458 -07 000000486 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:31:53.458 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:31:53.458 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:31:53.458 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:31:53.458 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:31:53.468 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 22:31:53.468 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:31:53.478 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 22:31:53.478 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 22:31:53.478 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:31:53.528 -07 000000627 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:31:53.728 -07 000000618 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:31:53.728 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:31:53.728 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:31:53.728 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 22:31:53.758 -07 000000476 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:31:53.768 -07 000000480 INF: FPGA: Recv CAMSNAP
17-03-17 22:31:53.768 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 286 ms overall
17-03-17 22:31:53.848 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 22:31:53.848 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:31:53.858 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:31:53.858 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 22:31:53.868 -07 000000486 INF: Autofocus start
17-03-17 22:31:53.868 -07 000000486 INF: MeasureProfile start
17-03-17 22:31:53.868 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:31:53.868 -07 000000627 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:31:53.878 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:31:53.878 -07 000000431 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:31:53.878 -07 000000486 INF: MeasureProfile done
17-03-17 22:31:53.878 -07 000000486 INF: X=16  Z correction [um]=0.0530179
17-03-17 22:31:53.878 -07 000000486 INF: Autofocus finished
17-03-17 22:31:54.078 -07 000000561 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:31:54.078 -07 000000431 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:31:54.078 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.37158203125, Z-position -0.137803633248867. ----------
17-03-17 22:31:54.078 -07 000000610 INF: Cycle	64	Tile	10	Exposure Settings		A	454	G	218	T	218	C	454
17-03-17 22:31:54.088 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28626, sync = True, waitForSettling = True)
17-03-17 22:31:54.088 -07 000000610 INF: Z Motor: Moving to -0.131041 mm, started at -0.137804 mm, distance = 6.76 um
17-03-17 22:31:54.088 -07 000000610 INF: FPGA: Xmit ZDACW 28626\n [Z Motor]
17-03-17 22:31:54.088 -07 000000626 INF: FPGA: Recv ZDACW
17-03-17 22:31:54.098 -07 000000610 INF: FPGA: 'ZDACW 28626' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:31:54.098 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:31:54.098 -07 000000618 INF: FPGA: Recv ZDACR 28626
17-03-17 22:31:54.108 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:54.108 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:31:54.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:54.258 -07 000000448 INF: FPGA: Recv ZSGSRD 29680
17-03-17 22:31:54.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:54.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:54.268 -07 000000618 INF: FPGA: Recv ZSGSRD 29690
17-03-17 22:31:54.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:54.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:54.278 -07 000000626 INF: FPGA: Recv ZSGSRD 29690
17-03-17 22:31:54.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:54.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:54.288 -07 000000618 INF: FPGA: Recv ZSGSRD 29686
17-03-17 22:31:54.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:54.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:54.298 -07 000000448 INF: FPGA: Recv ZSGSRD 29685
17-03-17 22:31:54.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:54.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:54.308 -07 000000618 INF: FPGA: Recv ZSGSRD 29692
17-03-17 22:31:54.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:54.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:54.318 -07 000000486 INF: FPGA: Recv ZSGSRD 29686
17-03-17 22:31:54.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:54.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:54.328 -07 000000618 INF: FPGA: Recv ZSGSRD 29676
17-03-17 22:31:54.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:54.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:54.338 -07 000000626 INF: FPGA: Recv ZSGSRD 29687
17-03-17 22:31:54.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:54.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:54.348 -07 000000618 INF: FPGA: Recv ZSGSRD 29689
17-03-17 22:31:54.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:54.358 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:31:54.358 -07 000000486 INF: FPGA: Recv ZPIEZORD 25358
17-03-17 22:31:54.368 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:54.368 -07 000000610 INF: Z Motor: Piezo is near 34.2 V (nominally 0 to 100 V), expect near 43.7 V, since DAC is at 4.368 V. Piezo Error = -9.5 V.
17-03-17 22:31:54.368 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.0 um, Read 10 ADC samples: Avg = 29686 (-130.3 uncal um), Error = 0.8 uncal um, Median = 29686 (-130.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 29676 (-130.2 uncal um), Max = 29692 (-130.3 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-17 22:31:54.368 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29686, posNoise = 6, negNoise = 10
17-03-17 22:31:54.368 -07 000000610 INF: Z Motor: After move to -0.131041, error = 0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:31:54.368 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 22:31:54.368 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:31:54.368 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:31:54.368 -07 000000476 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:31:54.368 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:31:54.368 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:31:54.368 -07 000000486 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:31:54.368 -07 000000551 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:31:54.368 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:31:54.368 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:31:54.368 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:31:54.368 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:31:54.368 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:31:54.378 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:31:54.378 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 22:31:54.378 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:31:54.378 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:31:54.388 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 22:31:54.388 -07 000000551 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 22:31:54.388 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 22:31:54.388 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 22:31:54.388 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 454 454 218 218 28803 150\n [Camera]
17-03-17 22:31:54.588 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:31:55.038 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 646
17-03-17 22:31:55.038 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 646
17-03-17 22:31:55.038 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:31:55.048 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:31:55.048 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 1458343128, 0x0, 391868352) start.
17-03-17 22:31:55.048 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 646
17-03-17 22:31:55.048 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 646
17-03-17 22:31:55.048 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:31:55.048 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:31:55.048 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-17 22:31:55.238 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28803 839
17-03-17 22:31:55.378 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning grn on 989
17-03-17 22:31:55.428 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 384 ms.
17-03-17 22:31:55.428 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-17 22:31:55.428 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:31:55.438 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 1458343128, 0x0, 391868352) end. Duration was 390 ms.
17-03-17 22:31:55.438 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 22:31:55.438 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:31:55.438 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:31:55.438 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:31:55.438 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 22:31:55.438 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 22:31:55.598 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1207
17-03-17 22:31:55.598 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1207
17-03-17 22:31:55.598 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:31:55.598 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:31:55.598 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) start.
17-03-17 22:31:55.608 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1207
17-03-17 22:31:55.608 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1207
17-03-17 22:31:55.608 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:31:55.608 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:31:55.608 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 22:31:55.788 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP 1399
17-03-17 22:31:55.798 -07 000000448 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:31:55.798 -07 000000610 INF: FPGA: 'CAMDBLSNAP 454 454 218 218 28803 150' command took 2 ms to send, 1400 ms to get response, and 1406 ms overall
17-03-17 22:31:55.798 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 22:31:55.798 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.37158203125, Z-Position -0.131032513651451. ------
17-03-17 22:31:55.798 -07 000000551 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:31:55.798 -07 000000626 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.13752 mm
17-03-17 22:31:55.798 -07 000000626 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:31:55.798 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:31:55.808 -07 000000551 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 22:31:55.808 -07 000000429 INF: Z Motor: Entering MoveAbsStepped (DAC = 30042, sync = True, waitForSettling = False)
17-03-17 22:31:55.808 -07 000000429 INF: Z Motor: Moving to -0.137523 mm, started at -0.131033 mm, distance = -6.49 um
17-03-17 22:31:55.808 -07 000000429 INF: FPGA: Xmit ZDACW 30042\n [Z Motor]
17-03-17 22:31:55.808 -07 000000561 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-17 22:31:55.808 -07 000000561 INF: Y Motor: Moving to 68.2126 mm, started at 67.3716 mm, delta = 0.8410 mm
17-03-17 22:31:55.808 -07 000000627 INF: FPGA: Recv ZDACW
17-03-17 22:31:55.818 -07 000000429 INF: FPGA: 'ZDACW 30042' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:55.818 -07 000000429 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:31:55.818 -07 000000476 INF: FPGA: Recv ZDACR 30042
17-03-17 22:31:55.828 -07 000000429 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:55.828 -07 000000429 INF: Z Motor: MoveAbsStepped took 19 ms (did NOT wait for settling yet))
17-03-17 22:31:55.828 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:31:55.828 -07 000000476 INF: FPGA: Recv YRDPOS 137977
17-03-17 22:31:55.838 -07 000000551 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:31:55.838 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:31:55.838 -07 000000561 INF: Y Motor: Encoder = 137977 = motor step 107794.5 = 67.3716 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:31:55.838 -07 000000561 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:31:55.838 -07 000000561 INF: Y Motor: Moving 1346 steps-23
17-03-17 22:31:55.848 -07 000000561 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:31:55.978 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) end. Duration was 379 ms.
17-03-17 22:31:55.978 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 22:31:55.978 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:31:55.988 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 22:31:55.988 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-17 22:31:55.988 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:31:55.988 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:31:55.988 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-17 22:31:55.988 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 22:31:55.998 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 22:31:56.038 -07 000000476 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:31:56.038 -07 000000551 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 232 ms overall
17-03-17 22:31:56.218 -07 000000627 INF: FPGA: Recv YMVTILE
17-03-17 22:31:56.218 -07 000000561 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 386 ms overall
17-03-17 22:31:56.258 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:31:56.268 -07 000000627 INF: FPGA: Recv YRDPOS 139682
17-03-17 22:31:56.268 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:31:56.268 -07 000000561 INF: Y Motor: Encoder = 139682 = motor step 109126.6 = 68.2041 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:31:56.268 -07 000000561 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-17 22:31:56.268 -07 000000561 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.841 mm, average velocity = 2.173 mm/sec
17-03-17 22:31:56.978 -07 000000429 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:31:56.978 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 63. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1016, R2=1046, Total=2062. Warn if over 250 bubbles per interval.
17-03-17 22:31:57.218 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:31:57.218 -07 000000429 INF: FPGA: Recv YRDPOS 139683
17-03-17 22:31:57.228 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:31:57.228 -07 000000561 INF: Y Motor: Encoder = 139683 = motor step 109127.3 = 68.2046 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:31:57.248 -07 000000561 INF: Y Motor: After move to 68.212608, error = -0.008018, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:31:57.248 -07 000000561 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 22:31:57.248 -07 000000561 INF: Y Motor: Moved to 68.2046 after 1443 ms (table move)
17-03-17 22:31:57.248 -07 000000626 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137523 mm (DAC = 30042)
17-03-17 22:31:57.248 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:57.258 -07 000000448 INF: FPGA: Recv ZSGSRD 30689
17-03-17 22:31:57.258 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 5 ms to get response, and 6 ms overall
17-03-17 22:31:57.258 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:57.258 -07 000000448 INF: FPGA: Recv ZSGSRD 30697
17-03-17 22:31:57.268 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 22:31:57.268 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:57.268 -07 000000448 INF: FPGA: Recv ZSGSRD 30702
17-03-17 22:31:57.278 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:57.278 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:57.278 -07 000000448 INF: FPGA: Recv ZSGSRD 30696
17-03-17 22:31:57.288 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:57.288 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:57.288 -07 000000551 INF: FPGA: Recv ZSGSRD 30697
17-03-17 22:31:57.298 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:57.298 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:57.298 -07 000000448 INF: FPGA: Recv ZSGSRD 30694
17-03-17 22:31:57.308 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:57.308 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:57.308 -07 000000458 INF: FPGA: Recv ZSGSRD 30696
17-03-17 22:31:57.318 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:57.318 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:57.318 -07 000000561 INF: FPGA: Recv ZSGSRD 30696
17-03-17 22:31:57.328 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:57.328 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:57.328 -07 000000458 INF: FPGA: Recv ZSGSRD 30699
17-03-17 22:31:57.338 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:57.338 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:57.338 -07 000000618 INF: FPGA: Recv ZSGSRD 30698
17-03-17 22:31:57.348 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:57.348 -07 000000626 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:31:57.348 -07 000000431 INF: FPGA: Recv ZPIEZORD 26703
17-03-17 22:31:57.358 -07 000000626 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:57.358 -07 000000626 INF: Z Motor: Piezo is near 37.0 V (nominally 0 to 100 V), expect near 45.8 V, since DAC is at 4.584 V. Piezo Error = -8.8 V.
17-03-17 22:31:57.358 -07 000000626 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.5 um, Read 10 ADC samples: Avg = 30696 (-136.7 uncal um), Error = 0.8 uncal um, Median = 30696 (-136.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30689 (-136.7 uncal um), Max = 30702 (-136.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 22:31:57.358 -07 000000626 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30696, posNoise = 6, negNoise = 7
17-03-17 22:31:57.358 -07 000000626 INF: Z Motor: After move to -0.137523, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:31:57.358 -07 000000626 INF: Z Motor: Settle wait time = 1448 ms, measure time = 102 ms (allowed 150 ms), total time = 1550 ms
17-03-17 22:31:57.358 -07 000000626 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 22:31:57.388 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 64, FrontChillerTemperature: 4.009895,
17-03-17 22:31:57.408 -07 000000626 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1604 ms
17-03-17 22:31:57.408 -07 000000626 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:31:57.408 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:31:57.408 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:31:57.408 -07 000000448 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:31:57.408 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:31:57.408 -07 000000476 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:31:57.408 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:31:57.418 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:31:57.418 -07 000000476 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:31:57.418 -07 000000476 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:31:57.418 -07 000000476 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:31:57.428 -07 000000476 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 22:31:57.428 -07 000000476 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 22:31:57.428 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:31:57.478 -07 000000618 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:31:57.678 -07 000000448 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:31:57.678 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:31:57.678 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:31:57.678 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 679626736, 0x0, 559484976) start.
17-03-17 22:31:57.718 -07 000000431 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:31:57.718 -07 000000448 INF: FPGA: Recv CAMSNAP
17-03-17 22:31:57.718 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 2 ms to send, 282 ms to get response, and 284 ms overall
17-03-17 22:31:57.788 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 679626736, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 22:31:57.788 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:31:57.798 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 22:31:57.798 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 22:31:57.818 -07 000000618 INF: Autofocus start
17-03-17 22:31:57.818 -07 000000618 INF: MeasureProfile start
17-03-17 22:31:57.828 -07 000000618 INF: MeasureProfile done
17-03-17 22:31:57.828 -07 000000618 INF: X=0  Z correction [um]=-0.02394831
17-03-17 22:31:57.828 -07 000000618 INF: Autofocus finished
17-03-17 22:31:57.838 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:31:57.838 -07 000000458 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:31:57.848 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 22:31:57.848 -07 000000561 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:31:58.048 -07 000000476 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:31:58.048 -07 000000561 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:31:58.048 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.20458984375, Z-position -0.137520967914629. ----------
17-03-17 22:31:58.048 -07 000000610 INF: Cycle	64	Tile	11	Exposure Settings		A	454	G	218	T	218	C	454
17-03-17 22:31:58.058 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28549, sync = True, waitForSettling = True)
17-03-17 22:31:58.058 -07 000000610 INF: Z Motor: Moving to -0.130689 mm, started at -0.137521 mm, distance = 6.83 um
17-03-17 22:31:58.058 -07 000000610 INF: FPGA: Xmit ZDACW 28549\n [Z Motor]
17-03-17 22:31:58.058 -07 000000480 INF: FPGA: Recv ZDACW
17-03-17 22:31:58.068 -07 000000610 INF: FPGA: 'ZDACW 28549' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:58.068 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:31:58.068 -07 000000448 INF: FPGA: Recv ZDACR 28549
17-03-17 22:31:58.078 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:58.078 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:31:58.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:58.228 -07 000000480 INF: FPGA: Recv ZSGSRD 29631
17-03-17 22:31:58.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:31:58.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:58.238 -07 000000480 INF: FPGA: Recv ZSGSRD 29632
17-03-17 22:31:58.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:58.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:58.248 -07 000000480 INF: FPGA: Recv ZSGSRD 29632
17-03-17 22:31:58.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:58.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:58.258 -07 000000618 INF: FPGA: Recv ZSGSRD 29632
17-03-17 22:31:58.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:31:58.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:58.268 -07 000000626 INF: FPGA: Recv ZSGSRD 29636
17-03-17 22:31:58.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:58.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:58.278 -07 000000618 INF: FPGA: Recv ZSGSRD 29637
17-03-17 22:31:58.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:58.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:58.288 -07 000000476 INF: FPGA: Recv ZSGSRD 29635
17-03-17 22:31:58.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:58.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:58.298 -07 000000476 INF: FPGA: Recv ZSGSRD 29632
17-03-17 22:31:58.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:58.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:58.308 -07 000000476 INF: FPGA: Recv ZSGSRD 29636
17-03-17 22:31:58.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:58.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:31:58.318 -07 000000476 INF: FPGA: Recv ZSGSRD 29635
17-03-17 22:31:58.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:58.328 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:31:58.328 -07 000000429 INF: FPGA: Recv ZPIEZORD 25304
17-03-17 22:31:58.338 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:31:58.338 -07 000000610 INF: Z Motor: Piezo is near 34.1 V (nominally 0 to 100 V), expect near 43.6 V, since DAC is at 4.356 V. Piezo Error = -9.5 V.
17-03-17 22:31:58.338 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.7 um, Read 10 ADC samples: Avg = 29634 (-129.9 uncal um), Error = 0.8 uncal um, Median = 29634 (-129.9 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 29631 (-129.9 uncal um), Max = 29637 (-129.9 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 22:31:58.338 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29634, posNoise = 3, negNoise = 3
17-03-17 22:31:58.338 -07 000000610 INF: Z Motor: After move to -0.130689, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:31:58.338 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 22:31:58.338 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:31:58.338 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:31:58.338 -07 000000551 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:31:58.338 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:31:58.338 -07 000000448 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:31:58.338 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:31:58.338 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:31:58.338 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:31:58.338 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:31:58.338 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:31:58.338 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:31:58.338 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:31:58.348 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:31:58.348 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:31:58.348 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:31:58.348 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:31:58.358 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 22:31:58.358 -07 000000448 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 22:31:58.358 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-17 22:31:58.358 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 22:31:58.358 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 454 454 218 218 28726 150\n [Camera]
17-03-17 22:31:58.558 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning red on 194
17-03-17 22:31:59.008 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 646
17-03-17 22:31:59.008 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 646
17-03-17 22:31:59.018 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:31:59.018 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:31:59.018 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-17 22:31:59.018 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 646
17-03-17 22:31:59.018 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 646
17-03-17 22:31:59.018 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:31:59.138 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:31:59.138 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 22:31:59.208 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28726 839
17-03-17 22:31:59.358 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning grn on 989
17-03-17 22:31:59.398 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 382 ms.
17-03-17 22:31:59.398 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 22:31:59.398 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:31:59.398 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:31:59.398 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 22:31:59.508 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 370 ms.
17-03-17 22:31:59.508 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-17 22:31:59.508 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:31:59.518 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:31:59.518 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 506 ms.
17-03-17 22:31:59.578 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1207
17-03-17 22:31:59.578 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1207
17-03-17 22:31:59.578 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:31:59.578 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1207
17-03-17 22:31:59.578 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1207
17-03-17 22:31:59.578 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:31:59.588 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:31:59.588 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 1458343128, 0x0, 391868352) start.
17-03-17 22:31:59.588 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:31:59.588 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 22:31:59.768 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP 1400
17-03-17 22:31:59.768 -07 000000431 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:31:59.768 -07 000000610 INF: FPGA: 'CAMDBLSNAP 454 454 218 218 28726 150' command took 2 ms to send, 1402 ms to get response, and 1407 ms overall
17-03-17 22:31:59.768 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 22:31:59.768 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.20458984375, Z-Position -0.130698454620079. ------
17-03-17 22:31:59.768 -07 000000476 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:31:59.768 -07 000000626 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.13746 mm
17-03-17 22:31:59.768 -07 000000626 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:31:59.778 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:31:59.778 -07 000000476 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:31:59.778 -07 000000476 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:31:59.778 -07 000000551 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-17 22:31:59.778 -07 000000551 INF: Y Motor: Moving to 69.0426 mm, started at 68.2046 mm, delta = 0.8380 mm
17-03-17 22:31:59.778 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 30028, sync = True, waitForSettling = False)
17-03-17 22:31:59.778 -07 000000431 INF: Z Motor: Moving to -0.137459 mm, started at -0.130698 mm, distance = -6.76 um
17-03-17 22:31:59.788 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:31:59.788 -07 000000547 INF: FPGA: Recv YRDPOS 139684
17-03-17 22:31:59.798 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 22:31:59.798 -07 000000551 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:31:59.798 -07 000000431 INF: FPGA: Xmit ZDACW 30028\n [Z Motor]
17-03-17 22:31:59.798 -07 000000576 INF: FPGA: Recv ZDACW
17-03-17 22:31:59.798 -07 000000551 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:31:59.798 -07 000000551 INF: Y Motor: Moving 1340 steps-17
17-03-17 22:31:59.808 -07 000000551 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:31:59.808 -07 000000431 INF: FPGA: 'ZDACW 30028' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-17 22:31:59.818 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:31:59.818 -07 000000576 INF: FPGA: Recv ZDACR 30028
17-03-17 22:31:59.828 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:31:59.828 -07 000000431 INF: Z Motor: MoveAbsStepped took 46 ms (did NOT wait for settling yet))
17-03-17 22:31:59.978 -07 000000547 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:31:59.978 -07 000000476 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:31:59.988 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 1458343128, 0x0, 391868352) end. Duration was 400 ms.
17-03-17 22:31:59.988 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 22:31:59.988 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:31:59.988 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 402 ms.
17-03-17 22:31:59.988 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 22:31:59.988 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:31:59.988 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:31:59.988 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 415 ms.
17-03-17 22:31:59.998 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:31:59.998 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 424 ms.
17-03-17 22:32:00.178 -07 000000458 INF: FPGA: Recv YMVTILE
17-03-17 22:32:00.178 -07 000000551 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 383 ms overall
17-03-17 22:32:00.218 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:32:00.228 -07 000000431 INF: FPGA: Recv YRDPOS 141366
17-03-17 22:32:00.228 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 22:32:00.228 -07 000000551 INF: Y Motor: Encoder = 141366 = motor step 110442.2 = 69.0264 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:32:00.228 -07 000000551 INF: Y Motor: Position error before settling (table move) = -33 encoder counts (-0.016 mm)
17-03-17 22:32:00.228 -07 000000551 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 384 ms, distance = 0.838 mm, average velocity = 2.182 mm/sec
17-03-17 22:32:01.178 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:32:01.178 -07 000000561 INF: FPGA: Recv YRDPOS 141367
17-03-17 22:32:01.188 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:32:01.188 -07 000000551 INF: Y Motor: Encoder = 141367 = motor step 110443.0 = 69.0269 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:32:01.208 -07 000000551 INF: Y Motor: After move to 69.042610, error = -0.015755, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:32:01.208 -07 000000551 INF: Y Motor: Position error after settling (table move) = -32 encoder counts (-0.016 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 22:32:01.208 -07 000000551 INF: Y Motor: Moved to 69.0269 after 1430 ms (table move)
17-03-17 22:32:01.208 -07 000000626 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137459 mm (DAC = 30028)
17-03-17 22:32:01.208 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:32:01.218 -07 000000438 INF: FPGA: Recv ZSGSRD 30692
17-03-17 22:32:01.218 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 22:32:01.218 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:32:01.218 -07 000000448 INF: FPGA: Recv ZSGSRD 30685
17-03-17 22:32:01.228 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:32:01.228 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:32:01.228 -07 000000424 INF: FPGA: Recv ZSGSRD 30688
17-03-17 22:32:01.238 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:32:01.238 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:32:01.238 -07 000000431 INF: FPGA: Recv ZSGSRD 30691
17-03-17 22:32:01.248 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:32:01.248 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:32:01.248 -07 000000476 INF: FPGA: Recv ZSGSRD 30691
17-03-17 22:32:01.258 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:32:01.258 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:32:01.258 -07 000000576 INF: FPGA: Recv ZSGSRD 30682
17-03-17 22:32:01.268 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:32:01.268 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:32:01.268 -07 000000012 INF: FPGA: Recv ZSGSRD 30690
17-03-17 22:32:01.278 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:32:01.278 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:32:01.278 -07 000000462 INF: FPGA: Recv ZSGSRD 30683
17-03-17 22:32:01.288 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:32:01.288 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:32:01.288 -07 000000551 INF: FPGA: Recv ZSGSRD 30679
17-03-17 22:32:01.298 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:32:01.298 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:32:01.298 -07 000000627 INF: FPGA: Recv ZSGSRD 30684
17-03-17 22:32:01.308 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:32:01.308 -07 000000626 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:32:01.308 -07 000000576 INF: FPGA: Recv ZPIEZORD 26684
17-03-17 22:32:01.318 -07 000000626 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:32:01.318 -07 000000626 INF: Z Motor: Piezo is near 37.0 V (nominally 0 to 100 V), expect near 45.8 V, since DAC is at 4.582 V. Piezo Error = -8.8 V.
17-03-17 22:32:01.318 -07 000000626 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.5 um, Read 10 ADC samples: Avg = 30686 (-136.7 uncal um), Error = 0.8 uncal um, Median = 30686 (-136.7 uncal um), StdDev = 5 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30679 (-136.6 uncal um), Max = 30692 (-136.7 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 22:32:01.318 -07 000000626 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30686, posNoise = 6, negNoise = 7
17-03-17 22:32:01.318 -07 000000626 INF: Z Motor: After move to -0.137459, error = 0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:32:01.318 -07 000000626 INF: Z Motor: Settle wait time = 1434 ms, measure time = 102 ms (allowed 150 ms), total time = 1536 ms
17-03-17 22:32:01.318 -07 000000626 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 22:32:01.368 -07 000000626 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1592 ms
17-03-17 22:32:01.368 -07 000000626 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:32:01.368 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:32:01.368 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:32:01.368 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:32:01.368 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:32:01.368 -07 000000627 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:32:01.368 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:32:01.368 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:32:01.368 -07 000000627 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:32:01.378 -07 000000627 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 22:32:01.378 -07 000000627 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:32:01.388 -07 000000627 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 22:32:01.388 -07 000000627 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 22:32:01.388 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:32:01.438 -07 000000480 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:32:01.638 -07 000000458 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:32:01.638 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:32:01.648 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:32:01.648 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 22:32:01.678 -07 000000512 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:32:01.678 -07 000000448 INF: FPGA: Recv CAMSNAP
17-03-17 22:32:01.678 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 284 ms overall
17-03-17 22:32:01.758 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 22:32:01.758 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:32:01.758 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 22:32:01.758 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 22:32:01.978 -07 000000448 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:32:01.978 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 63. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1016, R2=1046, Total=2062. Warn if over 250 bubbles per interval.
17-03-17 22:32:01.988 -07 000000626 INF: Autofocus start
17-03-17 22:32:01.988 -07 000000626 INF: MeasureProfile start
17-03-17 22:32:01.988 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:32:01.988 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:32:01.998 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 22:32:01.998 -07 000000561 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:32:01.998 -07 000000626 INF: MeasureProfile done
17-03-17 22:32:01.998 -07 000000626 INF: X=-124  Z correction [um]=-0.6070125
17-03-17 22:32:01.998 -07 000000626 INF: Autofocus finished
17-03-17 22:32:02.198 -07 000000438 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:32:02.198 -07 000000561 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:32:02.198 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02685546875, Z-position -0.137456725793212. ----------
17-03-17 22:32:02.208 -07 000000610 INF: Cycle	64	Tile	12	Exposure Settings		A	454	G	218	T	218	C	454
17-03-17 22:32:02.208 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28408, sync = True, waitForSettling = True)
17-03-17 22:32:02.208 -07 000000610 INF: Z Motor: Moving to -0.130043 mm, started at -0.137457 mm, distance = 7.41 um
17-03-17 22:32:02.208 -07 000000610 INF: FPGA: Xmit ZDACW 28408\n [Z Motor]
17-03-17 22:32:02.208 -07 000000424 INF: FPGA: Recv ZDACW
17-03-17 22:32:02.218 -07 000000610 INF: FPGA: 'ZDACW 28408' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:32:02.218 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:32:02.218 -07 000000458 INF: FPGA: Recv ZDACR 28408
17-03-17 22:32:02.228 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:32:02.228 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:32:02.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:32:02.378 -07 000000012 INF: FPGA: Recv ZSGSRD 29530
17-03-17 22:32:02.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:32:02.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:32:02.388 -07 000000480 INF: FPGA: Recv ZSGSRD 29532
17-03-17 22:32:02.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:32:02.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:32:02.398 -07 000000627 INF: FPGA: Recv ZSGSRD 29530
17-03-17 22:32:02.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:32:02.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:32:02.408 -07 000000476 INF: FPGA: Recv ZSGSRD 29534
17-03-17 22:32:02.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:32:02.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:32:02.418 -07 000000475 INF: FPGA: Recv ZSGSRD 29534
17-03-17 22:32:02.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:32:02.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:32:02.438 -07 000000438 INF: FPGA: Recv ZSGSRD 29537
17-03-17 22:32:02.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:32:02.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:32:02.448 -07 000000476 INF: FPGA: Recv ZSGSRD 29528
17-03-17 22:32:02.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:32:02.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:32:02.458 -07 000000561 INF: FPGA: Recv ZSGSRD 29523
17-03-17 22:32:02.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:32:02.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:32:02.468 -07 000000626 INF: FPGA: Recv ZSGSRD 29529
17-03-17 22:32:02.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:32:02.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:32:02.478 -07 000000448 INF: FPGA: Recv ZSGSRD 29534
17-03-17 22:32:02.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:32:02.488 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:32:02.488 -07 000000438 INF: FPGA: Recv ZPIEZORD 25183
17-03-17 22:32:02.498 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:32:02.498 -07 000000610 INF: Z Motor: Piezo is near 33.8 V (nominally 0 to 100 V), expect near 43.3 V, since DAC is at 4.335 V. Piezo Error = -9.6 V.
17-03-17 22:32:02.498 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.0 um, Read 10 ADC samples: Avg = 29531 (-129.3 uncal um), Error = 0.8 uncal um, Median = 29531 (-129.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 29523 (-129.2 uncal um), Max = 29537 (-129.3 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 22:32:02.498 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29531, posNoise = 6, negNoise = 8
17-03-17 22:32:02.498 -07 000000610 INF: Z Motor: After move to -0.130043, error = 0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:32:02.498 -07 000000610 INF: Z Motor: MoveAbsStepped took 289 ms)
17-03-17 22:32:02.498 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:32:02.498 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:32:02.498 -07 000000448 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:32:02.498 -07 000000547 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:32:02.498 -07 000000476 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:32:02.498 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:32:02.498 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:32:02.498 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:32:02.498 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:32:02.498 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:32:02.498 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:32:02.498 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:32:02.508 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 22:32:02.508 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:32:02.508 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:32:02.508 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:32:02.508 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 22:32:02.518 -07 000000476 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 22:32:02.518 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 22:32:02.518 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 22:32:02.518 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 454 454 218 218 28585 150\n [Camera]
17-03-17 22:32:02.718 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:32:02.748 -07 000000438 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 64, FrontChillerTemperature: 4.004458,
17-03-17 22:32:03.168 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 646
17-03-17 22:32:03.168 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 646
17-03-17 22:32:03.168 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:32:03.178 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 646
17-03-17 22:32:03.178 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 646
17-03-17 22:32:03.178 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:32:03.178 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:32:03.178 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 22:32:03.178 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:32:03.178 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 22:32:03.358 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28585 839
17-03-17 22:32:03.508 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP turning grn on 989
17-03-17 22:32:03.548 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 22:32:03.558 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 22:32:03.558 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:32:03.558 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 381 ms.
17-03-17 22:32:03.558 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-17 22:32:03.558 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:32:03.558 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:32:03.558 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 22:32:03.558 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:32:03.568 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 22:32:03.738 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1207
17-03-17 22:32:03.738 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1207
17-03-17 22:32:03.738 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:32:03.738 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:32:03.738 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 1458343128, 0x0, 391868352) start.
17-03-17 22:32:03.738 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1207
17-03-17 22:32:03.738 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1207
17-03-17 22:32:03.738 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:32:03.738 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:32:03.738 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-17 22:32:03.918 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP 1399
17-03-17 22:32:03.928 -07 000000576 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:32:03.928 -07 000000610 INF: FPGA: 'CAMDBLSNAP 454 454 218 218 28585 150' command took 2 ms to send, 1400 ms to get response, and 1407 ms overall
17-03-17 22:32:03.928 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 22:32:03.928 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.02685546875, Z-Position -0.130036760769478. ------
17-03-17 22:32:03.928 -07 000000012 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:32:03.928 -07 000000626 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.13649 mm
17-03-17 22:32:03.928 -07 000000626 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:32:03.928 -07 000000547 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-17 22:32:03.928 -07 000000547 INF: Y Motor: Moving to 69.8726 mm, started at 69.0269 mm, delta = 0.8458 mm
17-03-17 22:32:03.928 -07 000000576 INF: Z Motor: Entering MoveAbsStepped (DAC = 29816, sync = True, waitForSettling = False)
17-03-17 22:32:03.928 -07 000000576 INF: Z Motor: Moving to -0.136489 mm, started at -0.130037 mm, distance = -6.45 um
17-03-17 22:32:03.928 -07 000000448 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:32:03.938 -07 000000012 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:32:03.938 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:32:03.938 -07 000000448 INF: FPGA: Recv YRDPOS 141367
17-03-17 22:32:03.948 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 22:32:03.948 -07 000000547 INF: Y Motor: Encoder = 141367 = motor step 110443.0 = 69.0269 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:32:03.948 -07 000000547 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:32:03.948 -07 000000547 INF: Y Motor: Moving 1353 steps-33
17-03-17 22:32:03.948 -07 000000576 INF: FPGA: Xmit ZDACW 29816\n [Z Motor]
17-03-17 22:32:03.948 -07 000000476 INF: FPGA: Recv ZDACW
17-03-17 22:32:03.958 -07 000000012 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:32:03.958 -07 000000576 INF: FPGA: 'ZDACW 29816' command took 0 ms to send, 0 ms to get response, and 20 ms overall
17-03-17 22:32:03.968 -07 000000547 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:32:03.978 -07 000000576 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:32:03.978 -07 000000476 INF: FPGA: Recv ZDACR 29816
17-03-17 22:32:03.988 -07 000000576 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:32:03.988 -07 000000576 INF: Z Motor: MoveAbsStepped took 51 ms (did NOT wait for settling yet))
17-03-17 22:32:04.138 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 1458343128, 0x0, 391868352) end. Duration was 403 ms.
17-03-17 22:32:04.138 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 402 ms.
17-03-17 22:32:04.138 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 22:32:04.138 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:32:04.138 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 22:32:04.138 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:32:04.148 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:32:04.148 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:32:04.148 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-17 22:32:04.158 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-17 22:32:04.158 -07 000000618 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:32:04.158 -07 000000012 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 22:32:04.338 -07 000000576 INF: FPGA: Recv YMVTILE
17-03-17 22:32:04.338 -07 000000547 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 22:32:04.378 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:32:04.388 -07 000000429 INF: FPGA: Recv YRDPOS 143079
17-03-17 22:32:04.388 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 22:32:04.388 -07 000000547 INF: Y Motor: Encoder = 143079 = motor step 111780.5 = 69.8628 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:32:04.388 -07 000000547 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-17 22:32:04.388 -07 000000547 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.846 mm, average velocity = 2.130 mm/sec
17-03-17 22:32:05.338 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:32:05.338 -07 000000618 INF: FPGA: Recv YRDPOS 143079
17-03-17 22:32:05.348 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:32:05.348 -07 000000547 INF: Y Motor: Encoder = 143079 = motor step 111780.5 = 69.8628 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:32:05.368 -07 000000547 INF: Y Motor: After move to 69.872612, error = -0.009819, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:32:05.368 -07 000000547 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:32:05.368 -07 000000547 INF: Y Motor: Moved to 69.8628 after 1437 ms (table move)
17-03-17 22:32:05.368 -07 000000626 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136489 mm (DAC = 29816)
17-03-17 22:32:05.368 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:32:05.378 -07 000000618 INF: FPGA: Recv ZSGSRD 30542
17-03-17 22:32:05.378 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 22:32:05.378 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:32:05.378 -07 000000012 INF: FPGA: Recv ZSGSRD 30534
17-03-17 22:32:05.388 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:32:05.388 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:32:05.388 -07 000000429 INF: FPGA: Recv ZSGSRD 30538
17-03-17 22:32:05.398 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:32:05.398 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:32:05.398 -07 000000448 INF: FPGA: Recv ZSGSRD 30541
17-03-17 22:32:05.408 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:32:05.408 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:32:05.408 -07 000000476 INF: FPGA: Recv ZSGSRD 30541
17-03-17 22:32:05.418 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:32:05.418 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:32:05.418 -07 000000512 INF: FPGA: Recv ZSGSRD 30538
17-03-17 22:32:05.428 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:32:05.428 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:32:05.428 -07 000000429 INF: FPGA: Recv ZSGSRD 30534
17-03-17 22:32:05.438 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:32:05.438 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:32:05.438 -07 000000448 INF: FPGA: Recv ZSGSRD 30531
17-03-17 22:32:05.448 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:32:05.448 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:32:05.448 -07 000000476 INF: FPGA: Recv ZSGSRD 30529
17-03-17 22:32:05.458 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:32:05.458 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:32:05.458 -07 000000512 INF: FPGA: Recv ZSGSRD 30541
17-03-17 22:32:05.468 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:32:05.468 -07 000000626 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:32:05.468 -07 000000012 INF: FPGA: Recv ZPIEZORD 26511
17-03-17 22:32:05.478 -07 000000626 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:32:05.478 -07 000000626 INF: Z Motor: Piezo is near 36.6 V (nominally 0 to 100 V), expect near 45.5 V, since DAC is at 4.550 V. Piezo Error = -8.9 V.
17-03-17 22:32:05.478 -07 000000626 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.5 um, Read 10 ADC samples: Avg = 30537 (-135.7 uncal um), Error = 0.8 uncal um, Median = 30538 (-135.7 uncal um), StdDev = 5 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30529 (-135.7 uncal um), Max = 30542 (-135.7 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 22:32:05.478 -07 000000626 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30537, posNoise = 5, negNoise = 8
17-03-17 22:32:05.478 -07 000000626 INF: Z Motor: After move to -0.136489, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:32:05.478 -07 000000626 INF: Z Motor: Settle wait time = 1440 ms, measure time = 101 ms (allowed 150 ms), total time = 1541 ms
17-03-17 22:32:05.478 -07 000000626 INF: Z Motor: Waiting extra 49 ms after reading position to reach expected total of 150 ms
17-03-17 22:32:05.528 -07 000000626 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1593 ms
17-03-17 22:32:05.528 -07 000000626 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:32:05.528 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:32:05.528 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:32:05.528 -07 000000429 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:32:05.528 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:32:05.528 -07 000000547 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:32:05.528 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:32:05.528 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:32:05.528 -07 000000547 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:32:05.538 -07 000000547 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 22:32:05.538 -07 000000547 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:32:05.548 -07 000000547 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 22:32:05.548 -07 000000547 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 22:32:05.548 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:32:05.598 -07 000000448 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:32:05.798 -07 000000476 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:32:05.798 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:32:05.798 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:32:05.908 -07 000000547 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:32:05.908 -07 000000547 INF: FPGA: Recv CAMSNAP
17-03-17 22:32:05.908 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 355 ms to get response, and 357 ms overall
17-03-17 22:32:05.908 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) start.
17-03-17 22:32:06.028 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 22:32:06.028 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:32:06.028 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:32:06.028 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 228 ms.
17-03-17 22:32:06.108 -07 000000448 INF: Autofocus start
17-03-17 22:32:06.108 -07 000000448 INF: MeasureProfile start
17-03-17 22:32:06.108 -07 000000476 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:32:06.108 -07 000000429 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:32:06.118 -07 000000476 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:32:06.118 -07 000000476 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:32:06.118 -07 000000448 INF: MeasureProfile done
17-03-17 22:32:06.118 -07 000000448 INF: X=16  Z correction [um]=0.0530179
17-03-17 22:32:06.118 -07 000000448 INF: Autofocus finished
17-03-17 22:32:06.318 -07 000000547 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:32:06.318 -07 000000476 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:32:06.318 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86279296875, Z-position -0.136499518184089. ----------
17-03-17 22:32:06.318 -07 000000610 INF: Cycle	64	Tile	13	Exposure Settings		A	454	G	218	T	218	C	454
17-03-17 22:32:06.328 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28340, sync = True, waitForSettling = True)
17-03-17 22:32:06.328 -07 000000610 INF: Z Motor: Moving to -0.129732 mm, started at -0.136500 mm, distance = 6.77 um
17-03-17 22:32:06.328 -07 000000610 INF: FPGA: Xmit ZDACW 28340\n [Z Motor]
17-03-17 22:32:06.328 -07 000000429 INF: FPGA: Recv ZDACW
17-03-17 22:32:06.338 -07 000000610 INF: FPGA: 'ZDACW 28340' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:32:06.338 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:32:06.338 -07 000000626 INF: FPGA: Recv ZDACR 28340
17-03-17 22:32:06.348 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:32:06.348 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:32:06.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:32:06.498 -07 000000576 INF: FPGA: Recv ZSGSRD 29487
17-03-17 22:32:06.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:32:06.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:32:06.508 -07 000000626 INF: FPGA: Recv ZSGSRD 29480
17-03-17 22:32:06.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:32:06.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:32:06.518 -07 000000448 INF: FPGA: Recv ZSGSRD 29485
17-03-17 22:32:06.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:32:06.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:32:06.528 -07 000000618 INF: FPGA: Recv ZSGSRD 29483
17-03-17 22:32:06.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:32:06.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:32:06.538 -07 000000448 INF: FPGA: Recv ZSGSRD 29485
17-03-17 22:32:06.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:32:06.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:32:06.548 -07 000000618 INF: FPGA: Recv ZSGSRD 29485
17-03-17 22:32:06.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:32:06.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:32:06.558 -07 000000448 INF: FPGA: Recv ZSGSRD 29483
17-03-17 22:32:06.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:32:06.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:32:06.568 -07 000000547 INF: FPGA: Recv ZSGSRD 29491
17-03-17 22:32:06.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:32:06.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:32:06.578 -07 000000626 INF: FPGA: Recv ZSGSRD 29481
17-03-17 22:32:06.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:32:06.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:32:06.588 -07 000000618 INF: FPGA: Recv ZSGSRD 29484
17-03-17 22:32:06.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:32:06.598 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:32:06.598 -07 000000626 INF: FPGA: Recv ZPIEZORD 25120
17-03-17 22:32:06.608 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:32:06.608 -07 000000610 INF: Z Motor: Piezo is near 33.7 V (nominally 0 to 100 V), expect near 43.2 V, since DAC is at 4.324 V. Piezo Error = -9.6 V.
17-03-17 22:32:06.608 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.7 um, Read 10 ADC samples: Avg = 29484 (-129.0 uncal um), Error = 0.8 uncal um, Median = 29484 (-129.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29480 (-128.9 uncal um), Max = 29491 (-129.0 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 22:32:06.608 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29484, posNoise = 7, negNoise = 4
17-03-17 22:32:06.608 -07 000000610 INF: Z Motor: After move to -0.129732, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:32:06.608 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 22:32:06.608 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:32:06.608 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:32:06.608 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:32:06.608 -07 000000476 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:32:06.608 -07 000000429 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:32:06.608 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:32:06.608 -07 000000547 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:32:06.608 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:32:06.608 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:32:06.608 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:32:06.608 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:32:06.608 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:32:06.618 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 22:32:06.618 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:32:06.618 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:32:06.618 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:32:06.618 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 22:32:06.618 -07 000000429 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 12 ms.
17-03-17 22:32:06.628 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 22:32:06.628 -07 000000547 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 22:32:06.628 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 454 454 218 218 28517 150\n [Camera]
17-03-17 22:32:06.828 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:32:06.978 -07 000000448 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:32:06.978 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 63. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1016, R2=1046, Total=2062. Warn if over 250 bubbles per interval.
17-03-17 22:32:07.278 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 646
17-03-17 22:32:07.278 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 646
17-03-17 22:32:07.288 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:32:07.288 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 646
17-03-17 22:32:07.288 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 646
17-03-17 22:32:07.288 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:32:07.288 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:32:07.288 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 22:32:07.288 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:32:07.288 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 22:32:07.478 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28517 839
17-03-17 22:32:07.628 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning grn on 989
17-03-17 22:32:07.668 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 373 ms.
17-03-17 22:32:07.668 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-17 22:32:07.668 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:32:07.668 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:32:07.668 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 379 ms.
17-03-17 22:32:07.668 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-17 22:32:07.668 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:32:07.678 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:32:07.678 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 22:32:07.678 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 22:32:07.848 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1207
17-03-17 22:32:07.848 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1207
17-03-17 22:32:07.848 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:32:07.848 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:32:07.848 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1458343128, 0x0, 391868352) start.
17-03-17 22:32:07.848 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1207
17-03-17 22:32:07.848 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1207
17-03-17 22:32:07.848 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:32:07.848 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:32:07.848 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-17 22:32:08.038 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP 1400
17-03-17 22:32:08.038 -07 000000448 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:32:08.038 -07 000000610 INF: FPGA: 'CAMDBLSNAP 454 454 218 218 28517 150' command took 2 ms to send, 1402 ms to get response, and 1408 ms overall
17-03-17 22:32:08.038 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 22:32:08.038 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.86279296875, Z-Position -0.129734822798815. ------
17-03-17 22:32:08.048 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:32:08.048 -07 000000547 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.13611 mm
17-03-17 22:32:08.048 -07 000000547 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:32:08.048 -07 000000475 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:32:08.048 -07 000000476 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-17 22:32:08.048 -07 000000448 INF: Z Motor: Entering MoveAbsStepped (DAC = 29733, sync = True, waitForSettling = False)
17-03-17 22:32:08.048 -07 000000448 INF: Z Motor: Moving to -0.136109 mm, started at -0.129735 mm, distance = -6.37 um
17-03-17 22:32:08.048 -07 000000476 INF: Y Motor: Moving to 70.7026 mm, started at 69.8628 mm, delta = 0.8398 mm
17-03-17 22:32:08.058 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:32:08.058 -07 000000448 INF: FPGA: Xmit ZDACW 29733\n [Z Motor]
17-03-17 22:32:08.058 -07 000000429 INF: FPGA: Recv ZDACW
17-03-17 22:32:08.068 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:32:08.068 -07 000000448 INF: FPGA: 'ZDACW 29733' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 22:32:08.068 -07 000000561 INF: FPGA: Recv YRDPOS 143080
17-03-17 22:32:08.078 -07 000000618 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:32:08.078 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-17 22:32:08.078 -07 000000476 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:32:08.078 -07 000000476 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:32:08.078 -07 000000476 INF: Y Motor: Moving 1343 steps-20
17-03-17 22:32:08.088 -07 000000448 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:32:08.088 -07 000000561 INF: FPGA: Recv ZDACR 29733
17-03-17 22:32:08.098 -07 000000476 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:32:08.098 -07 000000448 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:32:08.098 -07 000000448 INF: Z Motor: MoveAbsStepped took 46 ms (did NOT wait for settling yet))
17-03-17 22:32:08.118 -07 000000561 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 64, FrontChillerTemperature: 3.988112,
17-03-17 22:32:08.248 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1458343128, 0x0, 391868352) end. Duration was 401 ms.
17-03-17 22:32:08.248 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 22:32:08.248 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:32:08.248 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 400 ms.
17-03-17 22:32:08.248 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 22:32:08.248 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:32:08.248 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:32:08.258 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 22:32:08.258 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-17 22:32:08.258 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-17 22:32:08.278 -07 000000438 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:32:08.278 -07 000000618 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 22:32:08.468 -07 000000475 INF: FPGA: Recv YMVTILE
17-03-17 22:32:08.468 -07 000000476 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-17 22:32:08.528 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:32:08.528 -07 000000429 INF: FPGA: Recv YRDPOS 144769
17-03-17 22:32:08.538 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-17 22:32:08.538 -07 000000476 INF: Y Motor: Encoder = 144769 = motor step 113100.8 = 70.6880 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:32:08.538 -07 000000476 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-17 22:32:08.538 -07 000000476 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.840 mm, average velocity = 2.132 mm/sec
17-03-17 22:32:09.488 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:32:09.488 -07 000000429 INF: FPGA: Recv YRDPOS 144769
17-03-17 22:32:09.498 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:32:09.498 -07 000000476 INF: Y Motor: Encoder = 144769 = motor step 113100.8 = 70.6880 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:32:09.518 -07 000000476 INF: Y Motor: After move to 70.702606, error = -0.014618, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:32:09.518 -07 000000476 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:32:09.518 -07 000000476 INF: Y Motor: Moved to 70.6880 after 1472 ms (table move)
17-03-17 22:32:09.518 -07 000000547 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136109 mm (DAC = 29733)
17-03-17 22:32:09.518 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:32:09.528 -07 000000576 INF: FPGA: Recv ZSGSRD 30486
17-03-17 22:32:09.528 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-17 22:32:09.528 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:32:09.528 -07 000000551 INF: FPGA: Recv ZSGSRD 30475
17-03-17 22:32:09.538 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:32:09.538 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:32:09.538 -07 000000458 INF: FPGA: Recv ZSGSRD 30476
17-03-17 22:32:09.548 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:32:09.548 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:32:09.548 -07 000000476 INF: FPGA: Recv ZSGSRD 30477
17-03-17 22:32:09.558 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:32:09.558 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:32:09.558 -07 000000576 INF: FPGA: Recv ZSGSRD 30473
17-03-17 22:32:09.568 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:32:09.568 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:32:09.568 -07 000000551 INF: FPGA: Recv ZSGSRD 30475
17-03-17 22:32:09.578 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:32:09.578 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:32:09.578 -07 000000618 INF: FPGA: Recv ZSGSRD 30472
17-03-17 22:32:09.588 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:32:09.588 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:32:09.588 -07 000000475 INF: FPGA: Recv ZSGSRD 30479
17-03-17 22:32:09.598 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:32:09.598 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:32:09.598 -07 000000576 INF: FPGA: Recv ZSGSRD 30479
17-03-17 22:32:09.608 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:32:09.608 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:32:09.608 -07 000000551 INF: FPGA: Recv ZSGSRD 30478
17-03-17 22:32:09.618 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:32:09.618 -07 000000547 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:32:09.618 -07 000000458 INF: FPGA: Recv ZPIEZORD 26476
17-03-17 22:32:09.628 -07 000000547 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:32:09.628 -07 000000547 INF: Z Motor: Piezo is near 36.6 V (nominally 0 to 100 V), expect near 45.4 V, since DAC is at 4.537 V. Piezo Error = -8.8 V.
17-03-17 22:32:09.628 -07 000000547 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.1 um, Read 10 ADC samples: Avg = 30477 (-135.3 uncal um), Error = 0.8 uncal um, Median = 30476 (-135.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30472 (-135.3 uncal um), Max = 30486 (-135.4 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 22:32:09.628 -07 000000547 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30477, posNoise = 9, negNoise = 5
17-03-17 22:32:09.628 -07 000000547 INF: Z Motor: After move to -0.136109, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:32:09.628 -07 000000547 INF: Z Motor: Settle wait time = 1475 ms, measure time = 103 ms (allowed 150 ms), total time = 1578 ms
17-03-17 22:32:09.628 -07 000000547 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 22:32:09.678 -07 000000547 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1629 ms
17-03-17 22:32:09.678 -07 000000547 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:32:09.678 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:32:09.678 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:32:09.678 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:32:09.678 -07 000000475 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:32:09.678 -07 000000476 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:32:09.678 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:32:09.678 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 22:32:09.678 -07 000000476 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:32:09.688 -07 000000476 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:32:09.688 -07 000000476 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:32:09.688 -07 000000476 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 22:32:09.688 -07 000000476 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-17 22:32:09.698 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:32:09.738 -07 000000547 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:32:09.938 -07 000000462 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:32:09.938 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:32:09.938 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:32:09.948 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1510640456, 0x0, 559484976) start.
17-03-17 22:32:09.978 -07 000000551 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:32:09.978 -07 000000429 INF: FPGA: Recv CAMSNAP
17-03-17 22:32:09.978 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 284 ms overall
17-03-17 22:32:10.058 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1510640456, 0x0, 559484976) end. Duration was 117 ms.
17-03-17 22:32:10.058 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:32:10.058 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:32:10.058 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-17 22:32:10.078 -07 000000462 INF: Autofocus start
17-03-17 22:32:10.078 -07 000000462 INF: MeasureProfile start
17-03-17 22:32:10.078 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:32:10.078 -07 000000547 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:32:10.088 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:32:10.088 -07 000000618 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:32:10.088 -07 000000462 INF: MeasureProfile done
17-03-17 22:32:10.088 -07 000000462 INF: X=-16  Z correction [um]=-0.08128808
17-03-17 22:32:10.088 -07 000000462 INF: Autofocus finished
17-03-17 22:32:10.288 -07 000000476 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:32:10.288 -07 000000618 INF: FPGA: 'FOCMRRIMG' command took 1 ms to send, 194 ms to get response, and 204 ms overall
17-03-17 22:32:10.288 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.68798828125, Z-position -0.136114065455584. ----------
17-03-17 22:32:10.288 -07 000000610 INF: Cycle	64	Tile	14	Exposure Settings		A	454	G	218	T	218	C	454
17-03-17 22:32:10.298 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28228, sync = True, waitForSettling = True)
17-03-17 22:32:10.298 -07 000000610 INF: Z Motor: Moving to -0.129220 mm, started at -0.136114 mm, distance = 6.89 um
17-03-17 22:32:10.298 -07 000000610 INF: FPGA: Xmit ZDACW 28228\n [Z Motor]
17-03-17 22:32:10.298 -07 000000476 INF: FPGA: Recv ZDACW
17-03-17 22:32:10.308 -07 000000610 INF: FPGA: 'ZDACW 28228' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:32:10.308 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:32:10.308 -07 000000576 INF: FPGA: Recv ZDACR 28228
17-03-17 22:32:10.318 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:32:10.318 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:32:10.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:32:10.468 -07 000000551 INF: FPGA: Recv ZSGSRD 29404
17-03-17 22:32:10.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 11 ms overall
17-03-17 22:32:10.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:32:10.478 -07 000000429 INF: FPGA: Recv ZSGSRD 29408
17-03-17 22:32:10.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:32:10.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:32:10.488 -07 000000429 INF: FPGA: Recv ZSGSRD 29405
17-03-17 22:32:10.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:32:10.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:32:10.498 -07 000000462 INF: FPGA: Recv ZSGSRD 29408
17-03-17 22:32:10.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:32:10.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:32:10.508 -07 000000458 INF: FPGA: Recv ZSGSRD 29403
17-03-17 22:32:10.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:32:10.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:32:10.518 -07 000000547 INF: FPGA: Recv ZSGSRD 29405
17-03-17 22:32:10.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:32:10.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:32:10.528 -07 000000551 INF: FPGA: Recv ZSGSRD 29407
17-03-17 22:32:10.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:32:10.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:32:10.538 -07 000000476 INF: FPGA: Recv ZSGSRD 29404
17-03-17 22:32:10.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:32:10.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:32:10.548 -07 000000429 INF: FPGA: Recv ZSGSRD 29406
17-03-17 22:32:10.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:32:10.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:32:10.558 -07 000000462 INF: FPGA: Recv ZSGSRD 29400
17-03-17 22:32:10.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:32:10.568 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:32:10.568 -07 000000429 INF: FPGA: Recv ZPIEZORD 25075
17-03-17 22:32:10.578 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:32:10.578 -07 000000610 INF: Z Motor: Piezo is near 33.6 V (nominally 0 to 100 V), expect near 43.1 V, since DAC is at 4.307 V. Piezo Error = -9.5 V.
17-03-17 22:32:10.578 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.2 um, Read 10 ADC samples: Avg = 29405 (-128.5 uncal um), Error = 0.8 uncal um, Median = 29405 (-128.5 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29400 (-128.4 uncal um), Max = 29408 (-128.5 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 22:32:10.578 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29405, posNoise = 3, negNoise = 5
17-03-17 22:32:10.578 -07 000000610 INF: Z Motor: After move to -0.129220, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:32:10.578 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 22:32:10.578 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:32:10.578 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:32:10.578 -07 000000547 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:32:10.578 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:32:10.578 -07 000000475 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:32:10.578 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:32:10.578 -07 000000476 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:32:10.578 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:32:10.578 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 22:32:10.578 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:32:10.578 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:32:10.578 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:32:10.588 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:32:10.588 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:32:10.588 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:32:10.588 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:32:10.598 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 22:32:10.598 -07 000000475 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 22:32:10.598 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 22:32:10.598 -07 000000476 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 22:32:10.598 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 454 454 218 218 28405 150\n [Camera]
17-03-17 22:32:10.798 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:32:11.248 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 646
17-03-17 22:32:11.248 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 646
17-03-17 22:32:11.248 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:32:11.248 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:32:11.248 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start.
17-03-17 22:32:11.258 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 646
17-03-17 22:32:11.258 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 646
17-03-17 22:32:11.258 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:32:11.258 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:32:11.258 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) start.
17-03-17 22:32:11.448 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28405 839
17-03-17 22:32:11.598 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP turning grn on 989
17-03-17 22:32:11.628 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) end. Duration was 373 ms.
17-03-17 22:32:11.628 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-17 22:32:11.628 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:32:11.628 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:32:11.628 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 379 ms.
17-03-17 22:32:11.628 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-17 22:32:11.628 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:32:11.638 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:32:11.638 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 22:32:11.638 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-17 22:32:11.808 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1207
17-03-17 22:32:11.808 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1207
17-03-17 22:32:11.818 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:32:11.928 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1207
17-03-17 22:32:11.928 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1207
17-03-17 22:32:11.928 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:32:11.928 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:32:11.928 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 22:32:11.938 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:32:11.938 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 22:32:11.978 -07 000000551 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:32:11.978 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 63. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1016, R2=1046, Total=2062. Warn if over 250 bubbles per interval.
17-03-17 22:32:12.008 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP 1399
17-03-17 22:32:12.008 -07 000000462 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:32:12.008 -07 000000610 INF: FPGA: 'CAMDBLSNAP 454 454 218 218 28405 150' command took 2 ms to send, 1401 ms to get response, and 1406 ms overall
17-03-17 22:32:12.008 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 22:32:12.008 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.68798828125, Z-Position -0.129227310039616. ------
17-03-17 22:32:12.008 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:32:12.008 -07 000000429 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.13596 mm
17-03-17 22:32:12.008 -07 000000429 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:32:12.018 -07 000000462 INF: Z Motor: Entering MoveAbsStepped (DAC = 29700, sync = True, waitForSettling = False)
17-03-17 22:32:12.018 -07 000000462 INF: Z Motor: Moving to -0.135958 mm, started at -0.129227 mm, distance = -6.73 um
17-03-17 22:32:12.018 -07 000000476 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:32:12.018 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 22:32:12.018 -07 000000462 INF: FPGA: Xmit ZDACW 29700\n [Z Motor]
17-03-17 22:32:12.018 -07 000000551 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-17 22:32:12.018 -07 000000551 INF: Y Motor: Moving to 71.5326 mm, started at 70.6880 mm, delta = 0.8446 mm
17-03-17 22:32:12.018 -07 000000458 INF: FPGA: Recv ZDACW
17-03-17 22:32:12.028 -07 000000462 INF: FPGA: 'ZDACW 29700' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:32:12.028 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:32:12.028 -07 000000475 INF: FPGA: Recv YRDPOS 144770
17-03-17 22:32:12.038 -07 000000618 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:32:12.038 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-17 22:32:12.038 -07 000000551 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:32:12.038 -07 000000551 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:32:12.038 -07 000000551 INF: Y Motor: Moving 1351 steps-30
17-03-17 22:32:12.048 -07 000000462 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:32:12.048 -07 000000424 INF: FPGA: Recv ZDACR 29700
17-03-17 22:32:12.058 -07 000000462 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:32:12.058 -07 000000462 INF: Z Motor: MoveAbsStepped took 39 ms (did NOT wait for settling yet))
17-03-17 22:32:12.058 -07 000000551 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:32:12.238 -07 000000424 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:32:12.238 -07 000000618 INF: FPGA: 'FOCMRRFOC' command took 2 ms to send, 195 ms to get response, and 223 ms overall
17-03-17 22:32:12.328 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 395 ms.
17-03-17 22:32:12.328 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 22:32:12.328 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:32:12.338 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 401 ms.
17-03-17 22:32:12.338 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 22:32:12.338 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:32:12.338 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:32:12.338 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 522 ms.
17-03-17 22:32:12.338 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:32:12.348 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-17 22:32:12.438 -07 000000462 INF: FPGA: Recv YMVTILE
17-03-17 22:32:12.438 -07 000000551 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 394 ms overall
17-03-17 22:32:12.478 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:32:12.478 -07 000000424 INF: FPGA: Recv YRDPOS 146470
17-03-17 22:32:12.488 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:32:12.488 -07 000000551 INF: Y Motor: Encoder = 146470 = motor step 114429.7 = 71.5186 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:32:12.488 -07 000000551 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-17 22:32:12.488 -07 000000551 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.845 mm, average velocity = 2.144 mm/sec
17-03-17 22:32:13.438 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:32:13.438 -07 000000547 INF: FPGA: Recv YRDPOS 146470
17-03-17 22:32:13.448 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:32:13.448 -07 000000551 INF: Y Motor: Encoder = 146470 = motor step 114429.7 = 71.5186 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:32:13.468 -07 000000551 INF: Y Motor: After move to 71.532608, error = -0.014053, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:32:13.468 -07 000000551 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:32:13.468 -07 000000551 INF: Y Motor: Moved to 71.5186 after 1453 ms (table move)
17-03-17 22:32:13.468 -07 000000429 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135958 mm (DAC = 29700)
17-03-17 22:32:13.478 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:32:13.478 -07 000000547 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 64, FrontChillerTemperature: 3.989471,
17-03-17 22:32:13.478 -07 000000480 INF: FPGA: Recv ZSGSRD 30462
17-03-17 22:32:13.488 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:32:13.488 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:32:13.488 -07 000000424 INF: FPGA: Recv ZSGSRD 30455
17-03-17 22:32:13.498 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:32:13.508 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:32:13.508 -07 000000475 INF: FPGA: Recv ZSGSRD 30456
17-03-17 22:32:13.518 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:32:13.518 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:32:13.518 -07 000000475 INF: FPGA: Recv ZSGSRD 30451
17-03-17 22:32:13.528 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:32:13.548 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:32:13.548 -07 000000618 INF: FPGA: Recv ZSGSRD 30455
17-03-17 22:32:13.558 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:32:13.558 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:32:13.558 -07 000000618 INF: FPGA: Recv ZSGSRD 30456
17-03-17 22:32:13.568 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:32:13.578 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:32:13.578 -07 000000480 INF: FPGA: Recv ZSGSRD 30460
17-03-17 22:32:13.588 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:32:13.598 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:32:13.598 -07 000000551 INF: FPGA: Recv ZSGSRD 30461
17-03-17 22:32:13.608 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:32:13.608 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:32:13.608 -07 000000551 INF: FPGA: Recv ZSGSRD 30443
17-03-17 22:32:13.618 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:32:13.618 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:32:13.618 -07 000000551 INF: FPGA: Recv ZSGSRD 30446
17-03-17 22:32:13.628 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:32:13.628 -07 000000429 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:32:13.628 -07 000000458 INF: FPGA: Recv ZPIEZORD 26442
17-03-17 22:32:13.638 -07 000000429 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:32:13.638 -07 000000429 INF: Z Motor: Piezo is near 36.5 V (nominally 0 to 100 V), expect near 45.3 V, since DAC is at 4.532 V. Piezo Error = -8.8 V.
17-03-17 22:32:13.638 -07 000000429 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.0 um, Read 10 ADC samples: Avg = 30454 (-135.2 uncal um), Error = 0.8 uncal um, Median = 30456 (-135.2 uncal um), StdDev = 6 (0.0 uncal um), Range = 19 (0.1 uncal um), Min = 30443 (-135.1 uncal um), Max = 30462 (-135.2 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 11 (0.1 uncal um)
17-03-17 22:32:13.638 -07 000000429 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30454, posNoise = 8, negNoise = 11
17-03-17 22:32:13.638 -07 000000429 INF: Z Motor: After move to -0.135958, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:32:13.638 -07 000000429 INF: Z Motor: Settle wait time = 1457 ms, measure time = 162 ms (allowed 150 ms), total time = 1619 ms
17-03-17 22:32:13.638 -07 000000429 INF: Z Motor: Warning: Actual position measuring time = 162 ms, longer than max expected time of 150 ms
17-03-17 22:32:13.638 -07 000000429 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1623 ms
17-03-17 22:32:13.638 -07 000000429 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:32:13.638 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:32:13.638 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:32:13.638 -07 000000475 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:32:13.638 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:32:13.638 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:32:13.638 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:32:13.648 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:32:13.648 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:32:13.648 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:32:13.648 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:32:13.658 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 22:32:13.658 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 22:32:13.658 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:32:13.708 -07 000000551 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:32:13.908 -07 000000475 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:32:13.908 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:32:13.908 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:32:13.908 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) start.
17-03-17 22:32:13.948 -07 000000480 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:32:13.948 -07 000000547 INF: FPGA: Recv CAMSNAP
17-03-17 22:32:13.948 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 284 ms overall
17-03-17 22:32:14.018 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 22:32:14.018 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:32:14.018 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:32:14.018 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 22:32:14.048 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:32:14.048 -07 000000618 INF: Autofocus start
17-03-17 22:32:14.048 -07 000000618 INF: MeasureProfile start
17-03-17 22:32:14.048 -07 000000458 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:32:14.058 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 22:32:14.058 -07 000000480 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:32:14.058 -07 000000618 INF: MeasureProfile done
17-03-17 22:32:14.058 -07 000000618 INF: X=0  Z correction [um]=-0.02394831
17-03-17 22:32:14.058 -07 000000618 INF: Autofocus finished
17-03-17 22:32:14.258 -07 000000458 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:32:14.258 -07 000000480 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:32:14.258 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.5185546875, Z-position -0.135966308576323. ----------
17-03-17 22:32:14.268 -07 000000610 INF: Cycle	64	Tile	15	Exposure Settings		A	454	G	218	T	218	C	454
17-03-17 22:32:14.268 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28207, sync = True, waitForSettling = True)
17-03-17 22:32:14.268 -07 000000610 INF: Z Motor: Moving to -0.129123 mm, started at -0.135966 mm, distance = 6.84 um
17-03-17 22:32:14.268 -07 000000610 INF: FPGA: Xmit ZDACW 28207\n [Z Motor]
17-03-17 22:32:14.268 -07 000000480 INF: FPGA: Recv ZDACW
17-03-17 22:32:14.278 -07 000000610 INF: FPGA: 'ZDACW 28207' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:32:14.278 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:32:14.278 -07 000000547 INF: FPGA: Recv ZDACR 28207
17-03-17 22:32:14.288 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:32:14.288 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:32:14.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:32:14.438 -07 000000547 INF: FPGA: Recv ZSGSRD 29391
17-03-17 22:32:14.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:32:14.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:32:14.448 -07 000000618 INF: FPGA: Recv ZSGSRD 29389
17-03-17 22:32:14.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:32:14.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:32:14.458 -07 000000475 INF: FPGA: Recv ZSGSRD 29386
17-03-17 22:32:14.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:32:14.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:32:14.468 -07 000000476 INF: FPGA: Recv ZSGSRD 29385
17-03-17 22:32:14.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:32:14.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:32:14.478 -07 000000458 INF: FPGA: Recv ZSGSRD 29393
17-03-17 22:32:14.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:32:14.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:32:14.488 -07 000000576 INF: FPGA: Recv ZSGSRD 29390
17-03-17 22:32:14.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:32:14.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:32:14.498 -07 000000476 INF: FPGA: Recv ZSGSRD 29388
17-03-17 22:32:14.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:32:14.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:32:14.508 -07 000000458 INF: FPGA: Recv ZSGSRD 29389
17-03-17 22:32:14.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:32:14.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:32:14.518 -07 000000480 INF: FPGA: Recv ZSGSRD 29397
17-03-17 22:32:14.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:32:14.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:32:14.528 -07 000000618 INF: FPGA: Recv ZSGSRD 29389
17-03-17 22:32:14.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:32:14.538 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:32:14.538 -07 000000480 INF: FPGA: Recv ZPIEZORD 25050
17-03-17 22:32:14.548 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:32:14.548 -07 000000610 INF: Z Motor: Piezo is near 33.5 V (nominally 0 to 100 V), expect near 43.0 V, since DAC is at 4.304 V. Piezo Error = -9.5 V.
17-03-17 22:32:14.548 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.1 um, Read 10 ADC samples: Avg = 29390 (-128.4 uncal um), Error = 0.8 uncal um, Median = 29389 (-128.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29385 (-128.3 uncal um), Max = 29397 (-128.4 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 22:32:14.548 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29390, posNoise = 7, negNoise = 5
17-03-17 22:32:14.548 -07 000000610 INF: Z Motor: After move to -0.129123, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:32:14.548 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-17 22:32:14.548 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:32:14.548 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:32:14.548 -07 000000475 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:32:14.548 -07 000000458 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:32:14.548 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:32:14.548 -07 000000551 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:32:14.548 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:32:14.548 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:32:14.548 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 22:32:14.548 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:32:14.548 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 22:32:14.548 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:32:14.558 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:32:14.558 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:32:14.558 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 22:32:14.558 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:32:14.568 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 22:32:14.568 -07 000000458 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 22:32:14.568 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-17 22:32:14.568 -07 000000551 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 22:32:14.568 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 454 454 218 218 28384 150\n [Camera]
17-03-17 22:32:14.768 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:32:15.228 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 646
17-03-17 22:32:15.228 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 646
17-03-17 22:32:15.228 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:32:15.228 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:32:15.228 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 1458343128, 0x0, 391868352) start.
17-03-17 22:32:15.228 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 646
17-03-17 22:32:15.228 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 646
17-03-17 22:32:15.228 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:32:15.348 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:32:15.348 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 22:32:15.418 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28384 839
17-03-17 22:32:15.568 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP turning grn on 989
17-03-17 22:32:15.608 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 1458343128, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 22:32:15.608 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 22:32:15.608 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:32:15.608 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 22:32:15.608 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 22:32:15.728 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 381 ms.
17-03-17 22:32:15.728 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-17 22:32:15.728 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:32:15.738 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 22:32:15.738 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 514 ms.
17-03-17 22:32:15.788 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1207
17-03-17 22:32:15.788 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1207
17-03-17 22:32:15.788 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:32:15.788 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:32:15.788 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 22:32:15.788 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1207
17-03-17 22:32:15.788 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1207
17-03-17 22:32:15.788 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:32:15.788 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:32:15.788 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-17 22:32:15.978 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP 1399
17-03-17 22:32:15.978 -07 000000551 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:32:15.978 -07 000000610 INF: FPGA: 'CAMDBLSNAP 454 454 218 218 28384 150' command took 2 ms to send, 1403 ms to get response, and 1406 ms overall
17-03-17 22:32:15.978 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 22:32:15.978 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.5185546875, Z-Position -0.12913094685749. ------
17-03-17 22:32:15.978 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:32:15.978 -07 000000476 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.13548 mm
17-03-17 22:32:15.978 -07 000000476 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:32:15.988 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:32:15.988 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 22:32:15.988 -07 000000618 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:32:15.988 -07 000000551 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-17 22:32:15.988 -07 000000551 INF: Y Motor: Moving to 72.3626 mm, started at 71.5186 mm, delta = 0.8441 mm
17-03-17 22:32:15.988 -07 000000576 INF: Z Motor: Entering MoveAbsStepped (DAC = 29595, sync = True, waitForSettling = False)
17-03-17 22:32:15.988 -07 000000576 INF: Z Motor: Moving to -0.135477 mm, started at -0.129131 mm, distance = -6.35 um
17-03-17 22:32:15.998 -07 000000576 INF: FPGA: Xmit ZDACW 29595\n [Z Motor]
17-03-17 22:32:15.998 -07 000000475 INF: FPGA: Recv ZDACW
17-03-17 22:32:16.008 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:32:16.008 -07 000000576 INF: FPGA: 'ZDACW 29595' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 22:32:16.008 -07 000000480 INF: FPGA: Recv YRDPOS 146470
17-03-17 22:32:16.018 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-17 22:32:16.018 -07 000000551 INF: Y Motor: Encoder = 146470 = motor step 114429.7 = 71.5186 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:32:16.018 -07 000000551 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:32:16.018 -07 000000551 INF: Y Motor: Moving 1350 steps-29
17-03-17 22:32:16.018 -07 000000576 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:32:16.018 -07 000000458 INF: FPGA: Recv ZDACR 29595
17-03-17 22:32:16.028 -07 000000576 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:32:16.028 -07 000000576 INF: Z Motor: MoveAbsStepped took 35 ms (did NOT wait for settling yet))
17-03-17 22:32:16.028 -07 000000551 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:32:16.188 -07 000000480 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:32:16.188 -07 000000618 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 202 ms overall
17-03-17 22:32:16.188 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 404 ms.
17-03-17 22:32:16.188 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 22:32:16.188 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:32:16.188 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 403 ms.
17-03-17 22:32:16.188 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-17 22:32:16.188 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:32:16.198 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:32:16.198 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-17 22:32:16.198 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:32:16.208 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-17 22:32:16.398 -07 000000458 INF: FPGA: Recv YMVTILE
17-03-17 22:32:16.398 -07 000000551 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-17 22:32:16.438 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:32:16.438 -07 000000458 INF: FPGA: Recv YRDPOS 148171
17-03-17 22:32:16.448 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:32:16.448 -07 000000551 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:32:16.448 -07 000000551 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 22:32:16.448 -07 000000551 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.844 mm, average velocity = 2.175 mm/sec
17-03-17 22:32:16.978 -07 000000547 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:32:16.978 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 63. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1016, R2=1046, Total=2062. Warn if over 250 bubbles per interval.
17-03-17 22:32:17.398 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:32:17.398 -07 000000627 INF: FPGA: Recv YRDPOS 148171
17-03-17 22:32:17.408 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:32:17.408 -07 000000551 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:32:17.428 -07 000000551 INF: Y Motor: After move to 72.362610, error = -0.013489, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:32:17.428 -07 000000551 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:32:17.428 -07 000000551 INF: Y Motor: Moved to 72.3491 after 1440 ms (table move)
17-03-17 22:32:17.428 -07 000000476 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135477 mm (DAC = 29595)
17-03-17 22:32:17.428 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:32:17.438 -07 000000458 INF: FPGA: Recv ZSGSRD 30377
17-03-17 22:32:17.438 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 3 ms to get response, and 4 ms overall
17-03-17 22:32:17.438 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:32:17.438 -07 000000547 INF: FPGA: Recv ZSGSRD 30382
17-03-17 22:32:17.448 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:32:17.448 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:32:17.448 -07 000000618 INF: FPGA: Recv ZSGSRD 30375
17-03-17 22:32:17.458 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:32:17.458 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:32:17.458 -07 000000551 INF: FPGA: Recv ZSGSRD 30383
17-03-17 22:32:17.468 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:32:17.468 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:32:17.468 -07 000000475 INF: FPGA: Recv ZSGSRD 30384
17-03-17 22:32:17.478 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:32:17.478 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:32:17.478 -07 000000547 INF: FPGA: Recv ZSGSRD 30377
17-03-17 22:32:17.488 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:32:17.488 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:32:17.488 -07 000000458 INF: FPGA: Recv ZSGSRD 30375
17-03-17 22:32:17.498 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:32:17.498 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:32:17.498 -07 000000576 INF: FPGA: Recv ZSGSRD 30377
17-03-17 22:32:17.508 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:32:17.508 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:32:17.508 -07 000000475 INF: FPGA: Recv ZSGSRD 30376
17-03-17 22:32:17.518 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:32:17.518 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:32:17.518 -07 000000480 INF: FPGA: Recv ZSGSRD 30377
17-03-17 22:32:17.528 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:32:17.528 -07 000000476 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:32:17.528 -07 000000627 INF: FPGA: Recv ZPIEZORD 26349
17-03-17 22:32:17.538 -07 000000476 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:32:17.538 -07 000000476 INF: Z Motor: Piezo is near 36.3 V (nominally 0 to 100 V), expect near 45.2 V, since DAC is at 4.516 V. Piezo Error = -8.9 V.
17-03-17 22:32:17.538 -07 000000476 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.5 um, Read 10 ADC samples: Avg = 30378 (-134.7 uncal um), Error = 0.8 uncal um, Median = 30377 (-134.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 30375 (-134.7 uncal um), Max = 30384 (-134.7 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 22:32:17.538 -07 000000476 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30378, posNoise = 6, negNoise = 3
17-03-17 22:32:17.538 -07 000000476 INF: Z Motor: After move to -0.135477, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:32:17.538 -07 000000476 INF: Z Motor: Settle wait time = 1444 ms, measure time = 101 ms (allowed 150 ms), total time = 1545 ms
17-03-17 22:32:17.538 -07 000000476 INF: Z Motor: Waiting extra 49 ms after reading position to reach expected total of 150 ms
17-03-17 22:32:17.588 -07 000000476 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1600 ms
17-03-17 22:32:17.588 -07 000000476 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:32:17.588 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:32:17.588 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:32:17.588 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:32:17.588 -07 000000475 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:32:17.588 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:32:17.588 -07 000000547 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:32:17.588 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:32:17.588 -07 000000475 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:32:17.598 -07 000000475 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:32:17.598 -07 000000475 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:32:17.608 -07 000000475 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-17 22:32:17.608 -07 000000475 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-17 22:32:17.608 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:32:17.648 -07 000000627 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:32:17.848 -07 000000627 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:32:17.848 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:32:17.848 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:32:17.858 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 596199184, 0x0, 559484976) start.
17-03-17 22:32:17.888 -07 000000480 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:32:17.888 -07 000000618 INF: FPGA: Recv CAMSNAP
17-03-17 22:32:17.888 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 285 ms overall
17-03-17 22:32:17.968 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 596199184, 0x0, 559484976) end. Duration was 113 ms.
17-03-17 22:32:17.968 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:32:17.968 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:32:17.968 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 116 ms.
17-03-17 22:32:17.988 -07 000000475 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:32:17.988 -07 000000551 INF: Autofocus start
17-03-17 22:32:17.988 -07 000000551 INF: MeasureProfile start
17-03-17 22:32:17.988 -07 000000476 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:32:17.998 -07 000000475 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 22:32:17.998 -07 000000475 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:32:17.998 -07 000000551 INF: MeasureProfile done
17-03-17 22:32:17.998 -07 000000551 INF: X=0  Z correction [um]=-0.02394831
17-03-17 22:32:17.998 -07 000000551 INF: Autofocus finished
17-03-17 22:32:18.198 -07 000000458 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:32:18.198 -07 000000475 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:32:18.198 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.34912109375, Z-position -0.135478068453549. ----------
17-03-17 22:32:18.198 -07 000000610 INF: Cycle	64	Tile	16	Exposure Settings		A	454	G	218	T	218	C	454
17-03-17 22:32:18.208 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28102, sync = True, waitForSettling = True)
17-03-17 22:32:18.208 -07 000000610 INF: Z Motor: Moving to -0.128643 mm, started at -0.135478 mm, distance = 6.84 um
17-03-17 22:32:18.208 -07 000000610 INF: FPGA: Xmit ZDACW 28102\n [Z Motor]
17-03-17 22:32:18.208 -07 000000576 INF: FPGA: Recv ZDACW
17-03-17 22:32:18.218 -07 000000610 INF: FPGA: 'ZDACW 28102' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:32:18.218 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:32:18.218 -07 000000547 INF: FPGA: Recv ZDACR 28102
17-03-17 22:32:18.228 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:32:18.228 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:32:18.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:32:18.378 -07 000000618 INF: FPGA: Recv ZSGSRD 29319
17-03-17 22:32:18.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:32:18.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:32:18.388 -07 000000480 INF: FPGA: Recv ZSGSRD 29317
17-03-17 22:32:18.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:32:18.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:32:18.398 -07 000000547 INF: FPGA: Recv ZSGSRD 29317
17-03-17 22:32:18.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:32:18.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:32:18.408 -07 000000476 INF: FPGA: Recv ZSGSRD 29309
17-03-17 22:32:18.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:32:18.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:32:18.418 -07 000000547 INF: FPGA: Recv ZSGSRD 29316
17-03-17 22:32:18.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:32:18.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:32:18.428 -07 000000475 INF: FPGA: Recv ZSGSRD 29315
17-03-17 22:32:18.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:32:18.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:32:18.438 -07 000000627 INF: FPGA: Recv ZSGSRD 29315
17-03-17 22:32:18.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:32:18.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:32:18.448 -07 000000551 INF: FPGA: Recv ZSGSRD 29318
17-03-17 22:32:18.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:32:18.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:32:18.458 -07 000000458 INF: FPGA: Recv ZSGSRD 29313
17-03-17 22:32:18.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:32:18.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:32:18.468 -07 000000551 INF: FPGA: Recv ZSGSRD 29313
17-03-17 22:32:18.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:32:18.478 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:32:18.478 -07 000000458 INF: FPGA: Recv ZPIEZORD 24977
17-03-17 22:32:18.488 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:32:18.488 -07 000000610 INF: Z Motor: Piezo is near 33.4 V (nominally 0 to 100 V), expect near 42.9 V, since DAC is at 4.288 V. Piezo Error = -9.5 V.
17-03-17 22:32:18.488 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.6 um, Read 10 ADC samples: Avg = 29315 (-127.9 uncal um), Error = 0.8 uncal um, Median = 29316 (-127.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29309 (-127.8 uncal um), Max = 29319 (-127.9 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 22:32:18.488 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29315, posNoise = 4, negNoise = 6
17-03-17 22:32:18.488 -07 000000610 INF: Z Motor: After move to -0.128643, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:32:18.488 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 22:32:18.488 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:32:18.488 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:32:18.488 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:32:18.488 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:32:18.488 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:32:18.488 -07 000000476 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:32:18.488 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:32:18.488 -07 000000551 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:32:18.488 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:32:18.488 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 22:32:18.488 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:32:18.488 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:32:18.498 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:32:18.498 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:32:18.498 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:32:18.498 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:32:18.508 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 22:32:18.508 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 22:32:18.508 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 11 ms.
17-03-17 22:32:18.508 -07 000000476 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 17 ms.
17-03-17 22:32:18.508 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 454 454 218 218 28279 150\n [Camera]
17-03-17 22:32:18.708 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:32:18.898 -07 000000476 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 64, FrontChillerTemperature: 4.037119,
17-03-17 22:32:19.168 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 648
17-03-17 22:32:19.168 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 648
17-03-17 22:32:19.168 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:32:19.168 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:32:19.168 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start.
17-03-17 22:32:19.168 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 648
17-03-17 22:32:19.168 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 648
17-03-17 22:32:19.168 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:32:19.168 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:32:19.168 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) start.
17-03-17 22:32:19.358 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28279 839
17-03-17 22:32:19.508 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning grn on 989
17-03-17 22:32:19.548 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 22:32:19.548 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 22:32:19.548 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:32:19.548 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) end. Duration was 381 ms.
17-03-17 22:32:19.548 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-17 22:32:19.548 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:32:19.558 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:32:19.558 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 22:32:19.558 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:32:19.558 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 22:32:19.728 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1207
17-03-17 22:32:19.728 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1207
17-03-17 22:32:19.728 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:32:19.728 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:32:19.728 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 22:32:19.728 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1207
17-03-17 22:32:19.728 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1207
17-03-17 22:32:19.728 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:32:19.728 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:32:19.728 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 22:32:19.918 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP 1400
17-03-17 22:32:19.918 -07 000000480 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:32:19.918 -07 000000610 INF: FPGA: 'CAMDBLSNAP 454 454 218 218 28279 150' command took 2 ms to send, 1394 ms to get response, and 1406 ms overall
17-03-17 22:32:19.918 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 22:32:19.918 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.34912109375, Z-Position -0.128649130946857. ------
17-03-17 22:32:19.928 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:32:19.928 -07 000000486 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.13519 mm
17-03-17 22:32:19.928 -07 000000486 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:32:19.928 -07 000000458 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:32:19.928 -07 000000627 INF: Z Motor: Entering MoveAbsStepped (DAC = 29532, sync = True, waitForSettling = False)
17-03-17 22:32:19.928 -07 000000475 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-17 22:32:19.928 -07 000000475 INF: Y Motor: Moving to 73.1926 mm, started at 72.3491 mm, delta = 0.8435 mm
17-03-17 22:32:19.928 -07 000000627 INF: Z Motor: Moving to -0.135189 mm, started at -0.128649 mm, distance = -6.54 um
17-03-17 22:32:19.938 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:32:19.938 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:32:19.938 -07 000000458 INF: FPGA: Recv YRDPOS 148172
17-03-17 22:32:19.948 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 22:32:19.948 -07 000000627 INF: FPGA: Xmit ZDACW 29532\n [Z Motor]
17-03-17 22:32:19.948 -07 000000475 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:32:19.948 -07 000000476 INF: FPGA: Recv ZDACW
17-03-17 22:32:19.948 -07 000000475 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:32:19.948 -07 000000475 INF: Y Motor: Moving 1349 steps-28
17-03-17 22:32:19.958 -07 000000618 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:32:19.958 -07 000000627 INF: FPGA: 'ZDACW 29532' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-17 22:32:19.968 -07 000000475 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:32:19.978 -07 000000627 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:32:19.978 -07 000000458 INF: FPGA: Recv ZDACR 29532
17-03-17 22:32:19.988 -07 000000627 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:32:19.988 -07 000000627 INF: Z Motor: MoveAbsStepped took 56 ms (did NOT wait for settling yet))
17-03-17 22:32:20.128 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 394 ms.
17-03-17 22:32:20.128 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 22:32:20.128 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:32:20.128 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 398 ms.
17-03-17 22:32:20.128 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 22:32:20.128 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:32:20.128 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:32:20.138 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 22:32:20.138 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-17 22:32:20.138 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-17 22:32:20.158 -07 000000627 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:32:20.158 -07 000000618 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 22:32:20.338 -07 000000476 INF: FPGA: Recv YMVTILE
17-03-17 22:32:20.338 -07 000000475 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 393 ms overall
17-03-17 22:32:20.378 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:32:20.388 -07 000000547 INF: FPGA: Recv YRDPOS 149863
17-03-17 22:32:20.388 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 22:32:20.388 -07 000000475 INF: Y Motor: Encoder = 149863 = motor step 117080.5 = 73.1753 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:32:20.388 -07 000000475 INF: Y Motor: Position error before settling (table move) = -35 encoder counts (-0.017 mm)
17-03-17 22:32:20.388 -07 000000475 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.843 mm, average velocity = 2.141 mm/sec
17-03-17 22:32:21.338 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:32:21.338 -07 000000618 INF: FPGA: Recv YRDPOS 149864
17-03-17 22:32:21.348 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:32:21.348 -07 000000475 INF: Y Motor: Encoder = 149864 = motor step 117081.3 = 73.1758 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:32:21.368 -07 000000475 INF: Y Motor: After move to 73.192604, error = -0.016823, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:32:21.368 -07 000000475 INF: Y Motor: Position error after settling (table move) = -34 encoder counts (-0.017 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 22:32:21.368 -07 000000475 INF: Y Motor: Moved to 73.1758 after 1441 ms (table move)
17-03-17 22:32:21.368 -07 000000486 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135189 mm (DAC = 29532)
17-03-17 22:32:21.368 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:32:21.378 -07 000000458 INF: FPGA: Recv ZSGSRD 30334
17-03-17 22:32:21.378 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 22:32:21.378 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:32:21.378 -07 000000618 INF: FPGA: Recv ZSGSRD 30340
17-03-17 22:32:21.388 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:32:21.388 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:32:21.388 -07 000000576 INF: FPGA: Recv ZSGSRD 30331
17-03-17 22:32:21.398 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:32:21.398 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:32:21.398 -07 000000547 INF: FPGA: Recv ZSGSRD 30330
17-03-17 22:32:21.408 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:32:21.408 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:32:21.408 -07 000000458 INF: FPGA: Recv ZSGSRD 30342
17-03-17 22:32:21.418 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:32:21.418 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:32:21.418 -07 000000618 INF: FPGA: Recv ZSGSRD 30338
17-03-17 22:32:21.428 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:32:21.428 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:32:21.428 -07 000000458 INF: FPGA: Recv ZSGSRD 30338
17-03-17 22:32:21.438 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:32:21.438 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:32:21.438 -07 000000475 INF: FPGA: Recv ZSGSRD 30337
17-03-17 22:32:21.448 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:32:21.448 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:32:21.448 -07 000000576 INF: FPGA: Recv ZSGSRD 30334
17-03-17 22:32:21.458 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:32:21.458 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:32:21.458 -07 000000547 INF: FPGA: Recv ZSGSRD 30334
17-03-17 22:32:21.468 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:32:21.468 -07 000000486 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:32:21.468 -07 000000618 INF: FPGA: Recv ZPIEZORD 26301
17-03-17 22:32:21.478 -07 000000486 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:32:21.478 -07 000000486 INF: Z Motor: Piezo is near 36.2 V (nominally 0 to 100 V), expect near 45.1 V, since DAC is at 4.506 V. Piezo Error = -8.9 V.
17-03-17 22:32:21.478 -07 000000486 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.2 um, Read 10 ADC samples: Avg = 30336 (-134.4 uncal um), Error = 0.8 uncal um, Median = 30336 (-134.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30330 (-134.4 uncal um), Max = 30342 (-134.5 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 22:32:21.478 -07 000000486 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30336, posNoise = 6, negNoise = 6
17-03-17 22:32:21.478 -07 000000486 INF: Z Motor: After move to -0.135189, error = -0.000019, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:32:21.478 -07 000000486 INF: Z Motor: Settle wait time = 1444 ms, measure time = 102 ms (allowed 150 ms), total time = 1546 ms
17-03-17 22:32:21.478 -07 000000486 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 22:32:21.528 -07 000000486 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1599 ms
17-03-17 22:32:21.528 -07 000000486 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:32:21.528 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:32:21.528 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:32:21.528 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:32:21.528 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:32:21.528 -07 000000475 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:32:21.528 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:32:21.528 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:32:21.528 -07 000000475 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:32:21.538 -07 000000475 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:32:21.538 -07 000000475 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:32:21.548 -07 000000475 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 22:32:21.548 -07 000000475 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 22:32:21.548 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:32:21.598 -07 000000576 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:32:21.798 -07 000000458 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:32:21.798 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:32:21.798 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:32:21.798 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 679626736, 0x0, 559484976) start.
17-03-17 22:32:21.838 -07 000000547 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:32:21.838 -07 000000547 INF: FPGA: Recv CAMSNAP
17-03-17 22:32:21.838 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 283 ms to get response, and 287 ms overall
17-03-17 22:32:21.908 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 679626736, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 22:32:21.908 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:32:21.908 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 22:32:21.908 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 22:32:21.938 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:32:21.938 -07 000000576 INF: Autofocus start
17-03-17 22:32:21.938 -07 000000576 INF: MeasureProfile start
17-03-17 22:32:21.938 -07 000000627 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:32:21.948 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:32:21.948 -07 000000618 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:32:21.948 -07 000000576 INF: MeasureProfile done
17-03-17 22:32:21.948 -07 000000576 INF: X=16  Z correction [um]=0.0530179
17-03-17 22:32:21.948 -07 000000576 INF: Autofocus finished
17-03-17 22:32:21.978 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:32:21.978 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 63. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1016, R2=1046, Total=2062. Warn if over 250 bubbles per interval.
17-03-17 22:32:22.148 -07 000000475 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:32:22.148 -07 000000618 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:32:22.148 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.17578125, Z-position -0.135208251543595. ----------
17-03-17 22:32:22.158 -07 000000610 INF: Cycle	64	Tile	17	Exposure Settings		A	454	G	218	T	218	C	454
17-03-17 22:32:22.158 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28056, sync = True, waitForSettling = True)
17-03-17 22:32:22.158 -07 000000610 INF: Z Motor: Moving to -0.128432 mm, started at -0.135208 mm, distance = 6.78 um
17-03-17 22:32:22.158 -07 000000610 INF: FPGA: Xmit ZDACW 28056\n [Z Motor]
17-03-17 22:32:22.158 -07 000000458 INF: FPGA: Recv ZDACW
17-03-17 22:32:22.168 -07 000000610 INF: FPGA: 'ZDACW 28056' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:32:22.168 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:32:22.168 -07 000000627 INF: FPGA: Recv ZDACR 28056
17-03-17 22:32:22.178 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:32:22.178 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:32:22.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:32:22.328 -07 000000458 INF: FPGA: Recv ZSGSRD 29291
17-03-17 22:32:22.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:32:22.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:32:22.338 -07 000000480 INF: FPGA: Recv ZSGSRD 29280
17-03-17 22:32:22.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:32:22.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:32:22.348 -07 000000458 INF: FPGA: Recv ZSGSRD 29286
17-03-17 22:32:22.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:32:22.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:32:22.358 -07 000000480 INF: FPGA: Recv ZSGSRD 29283
17-03-17 22:32:22.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:32:22.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:32:22.368 -07 000000618 INF: FPGA: Recv ZSGSRD 29287
17-03-17 22:32:22.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:32:22.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:32:22.378 -07 000000551 INF: FPGA: Recv ZSGSRD 29285
17-03-17 22:32:22.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:32:22.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:32:22.388 -07 000000618 INF: FPGA: Recv ZSGSRD 29282
17-03-17 22:32:22.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:32:22.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:32:22.398 -07 000000551 INF: FPGA: Recv ZSGSRD 29290
17-03-17 22:32:22.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:32:22.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:32:22.408 -07 000000618 INF: FPGA: Recv ZSGSRD 29285
17-03-17 22:32:22.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:32:22.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:32:22.418 -07 000000618 INF: FPGA: Recv ZSGSRD 29280
17-03-17 22:32:22.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:32:22.428 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:32:22.428 -07 000000627 INF: FPGA: Recv ZPIEZORD 24918
17-03-17 22:32:22.438 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:32:22.438 -07 000000610 INF: Z Motor: Piezo is near 33.2 V (nominally 0 to 100 V), expect near 42.8 V, since DAC is at 4.281 V. Piezo Error = -9.6 V.
17-03-17 22:32:22.438 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.4 um, Read 10 ADC samples: Avg = 29285 (-127.7 uncal um), Error = 0.8 uncal um, Median = 29285 (-127.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29280 (-127.6 uncal um), Max = 29291 (-127.7 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 22:32:22.438 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29285, posNoise = 6, negNoise = 5
17-03-17 22:32:22.438 -07 000000610 INF: Z Motor: After move to -0.128432, error = -0.000024, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:32:22.438 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 22:32:22.438 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:32:22.438 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:32:22.438 -07 000000486 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:32:22.438 -07 000000475 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:32:22.438 -07 000000547 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:32:22.438 -07 000000551 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:32:22.438 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:32:22.438 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:32:22.438 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:32:22.438 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:32:22.438 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:32:22.438 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:32:22.448 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 22:32:22.448 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:32:22.448 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:32:22.448 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:32:22.458 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 22:32:22.458 -07 000000551 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 22:32:22.458 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 22:32:22.458 -07 000000547 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 22:32:22.458 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 454 454 218 218 28233 150\n [Camera]
17-03-17 22:32:22.658 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:32:23.118 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 646
17-03-17 22:32:23.118 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 646
17-03-17 22:32:23.118 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:32:23.118 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:32:23.118 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-17 22:32:23.118 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 646
17-03-17 22:32:23.118 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 646
17-03-17 22:32:23.118 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:32:23.118 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:32:23.118 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 22:32:23.308 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28233 839
17-03-17 22:32:23.458 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning grn on 989
17-03-17 22:32:23.488 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 373 ms.
17-03-17 22:32:23.488 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-17 22:32:23.488 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:32:23.488 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 22:32:23.488 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 22:32:23.498 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:32:23.498 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:32:23.498 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:32:23.498 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 22:32:23.508 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 22:32:23.678 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1207
17-03-17 22:32:23.678 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1207
17-03-17 22:32:23.678 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:32:23.678 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:32:23.678 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start.
17-03-17 22:32:23.678 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1207
17-03-17 22:32:23.678 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1207
17-03-17 22:32:23.678 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:32:23.678 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:32:23.678 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) start.
17-03-17 22:32:23.868 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP 1400
17-03-17 22:32:23.868 -07 000000551 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:32:23.868 -07 000000610 INF: FPGA: 'CAMDBLSNAP 454 454 218 218 28233 150' command took 2 ms to send, 1403 ms to get response, and 1409 ms overall
17-03-17 22:32:23.868 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 22:32:23.868 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.17578125, Z-Position -0.128456404582605. ------
17-03-17 22:32:23.988 -07 000000576 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.13475 mm
17-03-17 22:32:23.988 -07 000000576 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:32:23.998 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:32:23.998 -07 000000012 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-17 22:32:23.998 -07 000000012 INF: Y Motor: Moving to 74.0226 mm, started at 73.1758 mm, delta = 0.8468 mm
17-03-17 22:32:23.998 -07 000000480 INF: Z Motor: Entering MoveAbsStepped (DAC = 29435, sync = True, waitForSettling = False)
17-03-17 22:32:23.998 -07 000000480 INF: Z Motor: Moving to -0.134745 mm, started at -0.128456 mm, distance = -6.29 um
17-03-17 22:32:23.998 -07 000000475 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:32:24.008 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 1 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 22:32:24.008 -07 000000480 INF: FPGA: Xmit ZDACW 29435\n [Z Motor]
17-03-17 22:32:24.008 -07 000000551 INF: FPGA: Recv ZDACW
17-03-17 22:32:24.018 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:32:24.018 -07 000000480 INF: FPGA: 'ZDACW 29435' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-17 22:32:24.018 -07 000000627 INF: FPGA: Recv YRDPOS 149864
17-03-17 22:32:24.028 -07 000000618 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:32:24.028 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-17 22:32:24.028 -07 000000012 INF: Y Motor: Encoder = 149864 = motor step 117081.3 = 73.1758 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:32:24.028 -07 000000012 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:32:24.028 -07 000000012 INF: Y Motor: Moving 1355 steps-35
17-03-17 22:32:24.038 -07 000000480 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:32:24.038 -07 000000551 INF: FPGA: Recv ZDACR 29435
17-03-17 22:32:24.048 -07 000000012 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:32:24.048 -07 000000480 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:32:24.048 -07 000000480 INF: Z Motor: MoveAbsStepped took 47 ms (did NOT wait for settling yet))
17-03-17 22:32:24.078 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) end. Duration was 399 ms.
17-03-17 22:32:24.078 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 22:32:24.078 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:32:24.078 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 403 ms.
17-03-17 22:32:24.078 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 22:32:24.078 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:32:24.078 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:32:24.088 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 22:32:24.088 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-17 22:32:24.088 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-17 22:32:24.228 -07 000000475 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:32:24.228 -07 000000618 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 22:32:24.308 -07 000000627 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 64, FrontChillerTemperature: 4.014009,
17-03-17 22:32:24.418 -07 000000475 INF: FPGA: Recv YMVTILE
17-03-17 22:32:24.418 -07 000000012 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 22:32:24.448 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:32:24.458 -07 000000627 INF: FPGA: Recv YRDPOS 151568
17-03-17 22:32:24.468 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:32:24.468 -07 000000012 INF: Y Motor: Encoder = 151568 = motor step 118412.5 = 74.0078 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:32:24.468 -07 000000012 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-17 22:32:24.468 -07 000000012 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.847 mm, average velocity = 2.133 mm/sec
17-03-17 22:32:25.418 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:32:25.418 -07 000000627 INF: FPGA: Recv YRDPOS 151568
17-03-17 22:32:25.428 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:32:25.428 -07 000000012 INF: Y Motor: Encoder = 151568 = motor step 118412.5 = 74.0078 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:32:25.438 -07 000000012 INF: Y Motor: After move to 74.022606, error = -0.014793, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:32:25.438 -07 000000012 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:32:25.438 -07 000000012 INF: Y Motor: Moved to 74.0078 after 1446 ms (table move)
17-03-17 22:32:25.448 -07 000000576 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134745 mm (DAC = 29435)
17-03-17 22:32:25.448 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:32:25.448 -07 000000618 INF: FPGA: Recv ZSGSRD 30268
17-03-17 22:32:25.458 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:32:25.458 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:32:25.458 -07 000000012 INF: FPGA: Recv ZSGSRD 30263
17-03-17 22:32:25.468 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:32:25.468 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:32:25.468 -07 000000480 INF: FPGA: Recv ZSGSRD 30264
17-03-17 22:32:25.478 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:32:25.478 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:32:25.478 -07 000000547 INF: FPGA: Recv ZSGSRD 30270
17-03-17 22:32:25.488 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:32:25.488 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:32:25.488 -07 000000486 INF: FPGA: Recv ZSGSRD 30261
17-03-17 22:32:25.498 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:32:25.498 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:32:25.498 -07 000000012 INF: FPGA: Recv ZSGSRD 30263
17-03-17 22:32:25.508 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:32:25.508 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:32:25.508 -07 000000486 INF: FPGA: Recv ZSGSRD 30261
17-03-17 22:32:25.518 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:32:25.518 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:32:25.518 -07 000000012 INF: FPGA: Recv ZSGSRD 30261
17-03-17 22:32:25.528 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:32:25.528 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:32:25.528 -07 000000547 INF: FPGA: Recv ZSGSRD 30264
17-03-17 22:32:25.538 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:32:25.538 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:32:25.538 -07 000000551 INF: FPGA: Recv ZSGSRD 30261
17-03-17 22:32:25.548 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:32:25.548 -07 000000576 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:32:25.548 -07 000000547 INF: FPGA: Recv ZPIEZORD 26262
17-03-17 22:32:25.558 -07 000000576 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:32:25.558 -07 000000576 INF: Z Motor: Piezo is near 36.1 V (nominally 0 to 100 V), expect near 44.9 V, since DAC is at 4.491 V. Piezo Error = -8.8 V.
17-03-17 22:32:25.558 -07 000000576 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.7 um, Read 10 ADC samples: Avg = 30264 (-134.0 uncal um), Error = 0.8 uncal um, Median = 30263 (-133.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 30261 (-133.9 uncal um), Max = 30270 (-134.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 22:32:25.558 -07 000000576 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30264, posNoise = 6, negNoise = 3
17-03-17 22:32:25.558 -07 000000576 INF: Z Motor: After move to -0.134745, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:32:25.558 -07 000000576 INF: Z Motor: Settle wait time = 1449 ms, measure time = 108 ms (allowed 150 ms), total time = 1557 ms
17-03-17 22:32:25.558 -07 000000576 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-17 22:32:25.608 -07 000000576 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1611 ms
17-03-17 22:32:25.608 -07 000000576 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:32:25.608 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:32:25.608 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:32:25.608 -07 000000547 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:32:25.608 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:32:25.608 -07 000000012 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:32:25.608 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:32:25.608 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:32:25.608 -07 000000012 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:32:25.618 -07 000000012 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:32:25.618 -07 000000012 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:32:25.628 -07 000000012 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 22:32:25.628 -07 000000012 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-17 22:32:25.628 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:32:25.668 -07 000000458 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:32:25.868 -07 000000618 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:32:25.868 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:32:25.868 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:32:25.878 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 22:32:25.908 -07 000000012 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:32:25.908 -07 000000475 INF: FPGA: Recv CAMSNAP
17-03-17 22:32:25.908 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 284 ms overall
17-03-17 22:32:25.988 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 22:32:25.988 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:32:25.988 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 22:32:25.988 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-17 22:32:26.008 -07 000000486 INF: Autofocus start
17-03-17 22:32:26.008 -07 000000486 INF: MeasureProfile start
17-03-17 22:32:26.008 -07 000000547 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:32:26.008 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:32:26.018 -07 000000547 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:32:26.018 -07 000000547 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:32:26.018 -07 000000486 INF: MeasureProfile done
17-03-17 22:32:26.018 -07 000000486 INF: X=32  Z correction [um]=0.1299841
17-03-17 22:32:26.018 -07 000000486 INF: Autofocus finished
17-03-17 22:32:26.218 -07 000000480 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:32:26.218 -07 000000547 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:32:26.218 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.0078125, Z-position -0.134745708269389. ----------
17-03-17 22:32:26.218 -07 000000610 INF: Cycle	64	Tile	18	Exposure Settings		A	454	G	218	T	218	C	454
17-03-17 22:32:26.228 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27976, sync = True, waitForSettling = True)
17-03-17 22:32:26.228 -07 000000610 INF: Z Motor: Moving to -0.128066 mm, started at -0.134746 mm, distance = 6.68 um
17-03-17 22:32:26.228 -07 000000610 INF: FPGA: Xmit ZDACW 27976\n [Z Motor]
17-03-17 22:32:26.228 -07 000000012 INF: FPGA: Recv ZDACW
17-03-17 22:32:26.238 -07 000000610 INF: FPGA: 'ZDACW 27976' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:32:26.238 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:32:26.238 -07 000000012 INF: FPGA: Recv ZDACR 27976
17-03-17 22:32:26.248 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:32:26.248 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:32:26.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:32:26.398 -07 000000012 INF: FPGA: Recv ZSGSRD 29229
17-03-17 22:32:26.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:32:26.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:32:26.408 -07 000000012 INF: FPGA: Recv ZSGSRD 29225
17-03-17 22:32:26.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:32:26.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:32:26.418 -07 000000475 INF: FPGA: Recv ZSGSRD 29229
17-03-17 22:32:26.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:32:26.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:32:26.428 -07 000000012 INF: FPGA: Recv ZSGSRD 29220
17-03-17 22:32:26.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:32:26.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:32:26.438 -07 000000012 INF: FPGA: Recv ZSGSRD 29230
17-03-17 22:32:26.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:32:26.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:32:26.448 -07 000000475 INF: FPGA: Recv ZSGSRD 29231
17-03-17 22:32:26.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:32:26.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:32:26.458 -07 000000618 INF: FPGA: Recv ZSGSRD 29223
17-03-17 22:32:26.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:32:26.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:32:26.468 -07 000000547 INF: FPGA: Recv ZSGSRD 29226
17-03-17 22:32:26.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:32:26.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:32:26.478 -07 000000618 INF: FPGA: Recv ZSGSRD 29229
17-03-17 22:32:26.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:32:26.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:32:26.488 -07 000000012 INF: FPGA: Recv ZSGSRD 29224
17-03-17 22:32:26.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:32:26.498 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:32:26.498 -07 000000480 INF: FPGA: Recv ZPIEZORD 24871
17-03-17 22:32:26.508 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:32:26.508 -07 000000610 INF: Z Motor: Piezo is near 33.1 V (nominally 0 to 100 V), expect near 42.7 V, since DAC is at 4.269 V. Piezo Error = -9.6 V.
17-03-17 22:32:26.508 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.1 um, Read 10 ADC samples: Avg = 29227 (-127.3 uncal um), Error = 0.8 uncal um, Median = 29228 (-127.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29220 (-127.3 uncal um), Max = 29231 (-127.3 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 22:32:26.508 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29227, posNoise = 4, negNoise = 7
17-03-17 22:32:26.508 -07 000000610 INF: Z Motor: After move to -0.128066, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:32:26.508 -07 000000610 INF: Z Motor: MoveAbsStepped took 282 ms)
17-03-17 22:32:26.508 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:32:26.508 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:32:26.508 -07 000000551 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:32:26.508 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:32:26.508 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:32:26.508 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:32:26.518 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 22:32:26.518 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:32:26.518 -07 000000627 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:32:26.518 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:32:26.518 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:32:26.518 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:32:26.518 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:32:26.518 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:32:26.518 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 22:32:26.518 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:32:26.528 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 22:32:26.528 -07 000000551 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 22:32:26.528 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 22:32:26.528 -07 000000627 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 22:32:26.528 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 454 454 218 218 28153 150\n [Camera]
17-03-17 22:32:26.728 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:32:26.978 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:32:26.978 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 63. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1016, R2=1046, Total=2062. Warn if over 250 bubbles per interval.
17-03-17 22:32:27.178 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 646
17-03-17 22:32:27.178 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 646
17-03-17 22:32:27.188 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:32:27.188 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 646
17-03-17 22:32:27.188 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 646
17-03-17 22:32:27.188 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:32:27.188 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:32:27.188 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 22:32:27.198 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:32:27.198 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-17 22:32:27.378 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28153 839
17-03-17 22:32:27.528 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP turning grn on 989
17-03-17 22:32:27.558 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 372 ms.
17-03-17 22:32:27.558 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-17 22:32:27.558 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:32:27.568 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 369 ms.
17-03-17 22:32:27.568 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 370 ms.
17-03-17 22:32:27.568 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:32:27.568 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:32:27.568 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 22:32:27.568 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:32:27.578 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 22:32:27.748 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1207
17-03-17 22:32:27.748 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1207
17-03-17 22:32:27.748 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:32:27.748 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1207
17-03-17 22:32:27.748 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1207
17-03-17 22:32:27.748 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:32:27.868 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:32:27.868 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) start.
17-03-17 22:32:27.868 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:32:27.868 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start.
17-03-17 22:32:27.938 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP 1400
17-03-17 22:32:27.938 -07 000000551 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:32:27.938 -07 000000610 INF: FPGA: 'CAMDBLSNAP 454 454 218 218 28153 150' command took 2 ms to send, 1402 ms to get response, and 1406 ms overall
17-03-17 22:32:27.938 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 22:32:27.938 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.0078125, Z-Position -0.128083800278382. ------
17-03-17 22:32:27.938 -07 000000012 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:32:27.938 -07 000000475 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.13453 mm
17-03-17 22:32:27.938 -07 000000475 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:32:27.948 -07 000000486 INF: Z Motor: Entering MoveAbsStepped (DAC = 29388, sync = True, waitForSettling = False)
17-03-17 22:32:27.948 -07 000000486 INF: Z Motor: Moving to -0.134530 mm, started at -0.128084 mm, distance = -6.45 um
17-03-17 22:32:27.948 -07 000000547 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-17 22:32:27.948 -07 000000547 INF: Y Motor: Moving to 74.8526 mm, started at 74.0078 mm, delta = 0.8448 mm
17-03-17 22:32:27.948 -07 000000551 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:32:27.948 -07 000000012 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 4 ms overall
17-03-17 22:32:27.948 -07 000000486 INF: FPGA: Xmit ZDACW 29388\n [Z Motor]
17-03-17 22:32:27.948 -07 000000551 INF: FPGA: Recv ZDACW
17-03-17 22:32:27.958 -07 000000486 INF: FPGA: 'ZDACW 29388' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:32:27.958 -07 000000012 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:32:27.968 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:32:27.968 -07 000000627 INF: FPGA: Recv YRDPOS 151568
17-03-17 22:32:27.978 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:32:27.978 -07 000000547 INF: Y Motor: Encoder = 151568 = motor step 118412.5 = 74.0078 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:32:27.978 -07 000000547 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:32:27.978 -07 000000547 INF: Y Motor: Moving 1352 steps-30
17-03-17 22:32:27.978 -07 000000486 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:32:27.978 -07 000000627 INF: FPGA: Recv ZDACR 29388
17-03-17 22:32:27.988 -07 000000486 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:32:27.988 -07 000000486 INF: Z Motor: MoveAbsStepped took 39 ms (did NOT wait for settling yet))
17-03-17 22:32:27.988 -07 000000547 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:32:28.158 -07 000000551 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:32:28.158 -07 000000012 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 211 ms overall
17-03-17 22:32:28.268 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) end. Duration was 396 ms.
17-03-17 22:32:28.268 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 22:32:28.268 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:32:28.268 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 397 ms.
17-03-17 22:32:28.268 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 22:32:28.268 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:32:28.268 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:32:28.268 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:32:28.268 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 528 ms.
17-03-17 22:32:28.278 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 529 ms.
17-03-17 22:32:28.368 -07 000000486 INF: FPGA: Recv YMVTILE
17-03-17 22:32:28.368 -07 000000547 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 373 ms to get response, and 392 ms overall
17-03-17 22:32:28.388 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:32:28.398 -07 000000012 INF: FPGA: Recv YRDPOS 153255
17-03-17 22:32:28.398 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 22:32:28.398 -07 000000547 INF: Y Motor: Encoder = 153255 = motor step 119730.5 = 74.8315 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:32:28.398 -07 000000547 INF: Y Motor: Position error before settling (table move) = -43 encoder counts (-0.021 mm)
17-03-17 22:32:28.398 -07 000000547 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 392 ms, distance = 0.845 mm, average velocity = 2.155 mm/sec
17-03-17 22:32:29.348 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:32:29.348 -07 000000012 INF: FPGA: Recv YRDPOS 153256
17-03-17 22:32:29.358 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:32:29.358 -07 000000547 INF: Y Motor: Encoder = 153256 = motor step 119731.3 = 74.8320 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:32:29.368 -07 000000547 INF: Y Motor: After move to 74.852608, error = -0.020576, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:32:29.368 -07 000000547 INF: Y Motor: Position error after settling (table move) = -42 encoder counts (-0.021 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 22:32:29.368 -07 000000547 INF: Y Motor: Moved to 74.8320 after 1427 ms (table move)
17-03-17 22:32:29.378 -07 000000475 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134530 mm (DAC = 29388)
17-03-17 22:32:29.378 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:32:29.378 -07 000000618 INF: FPGA: Recv ZSGSRD 30226
17-03-17 22:32:29.388 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:32:29.388 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:32:29.388 -07 000000486 INF: FPGA: Recv ZSGSRD 30229
17-03-17 22:32:29.398 -07 000000475 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:32:29.398 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:32:29.398 -07 000000547 INF: FPGA: Recv ZSGSRD 30231
17-03-17 22:32:29.408 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:32:29.408 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:32:29.408 -07 000000618 INF: FPGA: Recv ZSGSRD 30231
17-03-17 22:32:29.418 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:32:29.418 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:32:29.418 -07 000000627 INF: FPGA: Recv ZSGSRD 30231
17-03-17 22:32:29.428 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:32:29.428 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:32:29.428 -07 000000486 INF: FPGA: Recv ZSGSRD 30234
17-03-17 22:32:29.438 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:32:29.438 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:32:29.438 -07 000000012 INF: FPGA: Recv ZSGSRD 30234
17-03-17 22:32:29.448 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:32:29.448 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:32:29.448 -07 000000480 INF: FPGA: Recv ZSGSRD 30224
17-03-17 22:32:29.458 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:32:29.458 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:32:29.458 -07 000000627 INF: FPGA: Recv ZSGSRD 30227
17-03-17 22:32:29.468 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:32:29.468 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:32:29.468 -07 000000458 INF: FPGA: Recv ZSGSRD 30233
17-03-17 22:32:29.478 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:32:29.478 -07 000000475 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:32:29.478 -07 000000486 INF: FPGA: Recv ZPIEZORD 26214
17-03-17 22:32:29.488 -07 000000475 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:32:29.488 -07 000000475 INF: Z Motor: Piezo is near 36.0 V (nominally 0 to 100 V), expect near 44.8 V, since DAC is at 4.484 V. Piezo Error = -8.8 V.
17-03-17 22:32:29.488 -07 000000475 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.5 um, Read 10 ADC samples: Avg = 30230 (-133.7 uncal um), Error = 0.8 uncal um, Median = 30231 (-133.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 30224 (-133.7 uncal um), Max = 30234 (-133.8 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 22:32:29.488 -07 000000475 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30230, posNoise = 4, negNoise = 6
17-03-17 22:32:29.488 -07 000000475 INF: Z Motor: After move to -0.134530, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:32:29.488 -07 000000475 INF: Z Motor: Settle wait time = 1431 ms, measure time = 109 ms (allowed 150 ms), total time = 1540 ms
17-03-17 22:32:29.488 -07 000000475 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-17 22:32:29.538 -07 000000475 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1592 ms
17-03-17 22:32:29.538 -07 000000475 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:32:29.538 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:32:29.538 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:32:29.538 -07 000000551 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:32:29.538 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:32:29.538 -07 000000627 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:32:29.538 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:32:29.538 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:32:29.538 -07 000000627 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:32:29.548 -07 000000627 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 22:32:29.548 -07 000000627 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:32:29.558 -07 000000627 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 22:32:29.558 -07 000000627 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 22:32:29.558 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:32:29.608 -07 000000551 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:32:29.678 -07 000000012 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 64, FrontChillerTemperature: 3.989471,
17-03-17 22:32:29.808 -07 000000012 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:32:29.808 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:32:29.808 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:32:29.808 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 22:32:29.848 -07 000000551 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:32:29.848 -07 000000475 INF: FPGA: Recv CAMSNAP
17-03-17 22:32:29.848 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 284 ms overall
17-03-17 22:32:29.918 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 22:32:29.918 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:32:29.928 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:32:29.928 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 22:32:29.948 -07 000000486 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:32:29.948 -07 000000547 INF: Autofocus start
17-03-17 22:32:29.948 -07 000000547 INF: MeasureProfile start
17-03-17 22:32:29.948 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:32:29.958 -07 000000486 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 22:32:29.958 -07 000000486 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:32:29.958 -07 000000547 INF: MeasureProfile done
17-03-17 22:32:29.958 -07 000000547 INF: X=0  Z correction [um]=-0.02394831
17-03-17 22:32:29.958 -07 000000547 INF: Autofocus finished
17-03-17 22:32:30.158 -07 000000012 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:32:30.158 -07 000000486 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:32:30.158 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83203125, Z-position -0.134527285056569. ----------
17-03-17 22:32:30.158 -07 000000610 INF: Cycle	64	Tile	19	Exposure Settings		A	454	G	218	T	218	C	454
17-03-17 22:32:30.168 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27895, sync = True, waitForSettling = True)
17-03-17 22:32:30.168 -07 000000610 INF: Z Motor: Moving to -0.127695 mm, started at -0.134527 mm, distance = 6.83 um
17-03-17 22:32:30.168 -07 000000610 INF: FPGA: Xmit ZDACW 27895\n [Z Motor]
17-03-17 22:32:30.168 -07 000000480 INF: FPGA: Recv ZDACW
17-03-17 22:32:30.178 -07 000000610 INF: FPGA: 'ZDACW 27895' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:32:30.178 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:32:30.178 -07 000000618 INF: FPGA: Recv ZDACR 27895
17-03-17 22:32:30.188 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:32:30.188 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:32:30.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:32:30.338 -07 000000480 INF: FPGA: Recv ZSGSRD 29166
17-03-17 22:32:30.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:32:30.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:32:30.348 -07 000000618 INF: FPGA: Recv ZSGSRD 29168
17-03-17 22:32:30.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:32:30.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:32:30.358 -07 000000480 INF: FPGA: Recv ZSGSRD 29169
17-03-17 22:32:30.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:32:30.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:32:30.368 -07 000000458 INF: FPGA: Recv ZSGSRD 29165
17-03-17 22:32:30.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:32:30.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:32:30.378 -07 000000480 INF: FPGA: Recv ZSGSRD 29168
17-03-17 22:32:30.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:32:30.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:32:30.388 -07 000000458 INF: FPGA: Recv ZSGSRD 29171
17-03-17 22:32:30.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:32:30.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:32:30.398 -07 000000480 INF: FPGA: Recv ZSGSRD 29164
17-03-17 22:32:30.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:32:30.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:32:30.408 -07 000000012 INF: FPGA: Recv ZSGSRD 29169
17-03-17 22:32:30.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:32:30.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:32:30.418 -07 000000547 INF: FPGA: Recv ZSGSRD 29169
17-03-17 22:32:30.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:32:30.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:32:30.428 -07 000000012 INF: FPGA: Recv ZSGSRD 29168
17-03-17 22:32:30.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:32:30.438 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:32:30.438 -07 000000458 INF: FPGA: Recv ZPIEZORD 24831
17-03-17 22:32:30.448 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:32:30.448 -07 000000610 INF: Z Motor: Piezo is near 33.0 V (nominally 0 to 100 V), expect near 42.6 V, since DAC is at 4.257 V. Piezo Error = -9.5 V.
17-03-17 22:32:30.448 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.7 um, Read 10 ADC samples: Avg = 29168 (-126.9 uncal um), Error = 0.8 uncal um, Median = 29168 (-126.9 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 29164 (-126.9 uncal um), Max = 29171 (-127.0 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 22:32:30.448 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29168, posNoise = 3, negNoise = 4
17-03-17 22:32:30.448 -07 000000610 INF: Z Motor: After move to -0.127695, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:32:30.448 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 22:32:30.448 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:32:30.448 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:32:30.448 -07 000000486 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:32:30.448 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:32:30.448 -07 000000551 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:32:30.448 -07 000000547 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:32:30.448 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:32:30.448 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:32:30.448 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 22:32:30.448 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:32:30.448 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:32:30.448 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:32:30.458 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:32:30.458 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:32:30.458 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:32:30.458 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:32:30.468 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 22:32:30.468 -07 000000551 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 22:32:30.468 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 22:32:30.468 -07 000000547 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 22:32:30.468 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 454 454 218 218 28072 150\n [Camera]
17-03-17 22:32:30.668 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning red on 194
17-03-17 22:32:31.118 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 646
17-03-17 22:32:31.118 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 646
17-03-17 22:32:31.118 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:32:31.128 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 646
17-03-17 22:32:31.128 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 646
17-03-17 22:32:31.128 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:32:31.128 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:32:31.128 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 22:32:31.128 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:32:31.128 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-17 22:32:31.318 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28072 839
17-03-17 22:32:31.468 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning grn on 989
17-03-17 22:32:31.498 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 372 ms.
17-03-17 22:32:31.498 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-17 22:32:31.498 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:32:31.498 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 22:32:31.498 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 22:32:31.498 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:32:31.508 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:32:31.508 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 22:32:31.508 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 22:32:31.518 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 22:32:31.678 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1207
17-03-17 22:32:31.678 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1207
17-03-17 22:32:31.688 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:32:31.688 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:32:31.688 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 1458343128, 0x0, 391868352) start.
17-03-17 22:32:31.688 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1207
17-03-17 22:32:31.688 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1207
17-03-17 22:32:31.688 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:32:31.688 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:32:31.688 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 22:32:31.878 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP 1400
17-03-17 22:32:31.878 -07 000000462 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:32:31.878 -07 000000610 INF: FPGA: 'CAMDBLSNAP 454 454 218 218 28072 150' command took 2 ms to send, 1401 ms to get response, and 1407 ms overall
17-03-17 22:32:31.978 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:32:31.978 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 63. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1016, R2=1046, Total=2062. Warn if over 250 bubbles per interval.
17-03-17 22:32:32.078 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 1458343128, 0x0, 391868352) end. Duration was 397 ms.
17-03-17 22:32:32.088 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 22:32:32.088 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:32:32.088 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 396 ms.
17-03-17 22:32:32.088 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 22:32:32.088 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:32:32.088 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:32:32.088 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 22:32:32.088 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-17 22:32:32.088 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:32:32.098 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-17 22:32:32.128 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 42 ms.
17-03-17 22:32:32.128 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-17 22:32:32.178 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 42 ms.
17-03-17 22:32:32.188 -07 000000610 INF: Enabling Skipping AutoFocus in the next 4 cycles.
17-03-17 22:32:32.188 -07 000000610 INF: Imaging Cycle 64: ScanTilesCommand Cycle 64 time end. Duration was 164351 ms.
17-03-17 22:32:32.188 -07 000000610 INF: =================== Cycle #64 ===================
17-03-17 22:32:32.188 -07 000000610 INF: ===================  ===================
17-03-17 22:32:32.188 -07 000000627 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-17 22:32:32.188 -07 000000480 INF: FPGA: Recv EXLED1ADCR 27
17-03-17 22:32:32.198 -07 000000627 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 22:32:32.198 -07 000000627 INF: GreenLED: Using Green data: Photodiode ADC 27 --> 0.0 mW (old method), or 2.0 mW (new method). Difference = 2.0 mW
17-03-17 22:32:32.198 -07 000000627 INF: Predictive Diagnostic Log Cycle Entry Metrics: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 64, FrontChillerTemperature: 3.989471, FrontChillerHeatSinkTemperature: 0.267847, AmbientTemperature: 18.97417, FlowCellCompartmentTemperature: 21.98239, FlowCellTargetTemperature: 22, FlowCellHeatSinkTemperature: 18.8209, GreenLEDSensorTemperature: 26.38995, PhotodiodePowerAdcGreen: 27, PhotodiodePowerMwGreen: 2.018235
17-03-17 22:32:32.238 -07 000000610 INF: Y-Drift Offset assigned 0.002126916.