17-03-17 22:32:32.298 -07 000000610 INF: =================== Cycle #65 =================== 17-03-17 22:32:32.298 -07 000000610 INF: Y Motor: Entering MoveAbsStepped (target = 120609 steps, sync = True, waitForSettling = True) 17-03-17 22:32:32.298 -07 000000610 INF: Y Motor: Moving to 75.3806 mm, started at 74.8320 mm, delta = 0.5485 mm 17-03-17 22:32:32.298 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 22:32:32.298 -07 000000480 INF: FPGA: Recv YRDPOS 153256 17-03-17 22:32:32.308 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-17 22:32:32.308 -07 000000610 INF: Y Motor: Encoder = 153256 = motor step 119731.3 = 74.8320 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 22:32:32.308 -07 000000610 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = 0.5280 mm (844.8 steps). UsingTableMove = False 17-03-17 22:32:32.308 -07 000000610 INF: Y Motor: Moving to 154379 encoder counts 17-03-17 22:32:32.308 -07 000000610 INF: FPGA: Xmit YMVTO 154379\n [Y Motor] 17-03-17 22:32:32.418 -07 000000486 INF: FPGA: Recv YMVTO 154377 873 17-03-17 22:32:32.418 -07 000000610 INF: FPGA: 'YMVTO 154379' command took 0 ms to send, 106 ms to get response, and 116 ms overall 17-03-17 22:32:32.418 -07 000000610 INF: Y Motor: Position error before settling = -2 encoder counts (-0.001 mm) 17-03-17 22:32:32.418 -07 000000610 INF: Y Motor: To move from 74.832 to 75.381 (0.549 mm) should take 877 steps, but required 873 steps (0.546 mm). Slippage = -0.003 mm (0.00%). 17-03-17 22:32:32.418 -07 000000610 INF: Y Motor: FPGA move command 'YMVTO 154379' took 116 ms, distance = 0.549 mm, average velocity = 4.729 mm/sec 17-03-17 22:32:35.048 -07 000000547 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 65, FrontChillerTemperature: 3.974486, 17-03-17 22:32:35.418 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 22:32:35.418 -07 000000458 INF: FPGA: Recv YRDPOS 154380 17-03-17 22:32:35.428 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 22:32:35.428 -07 000000610 INF: Y Motor: Encoder = 154380 = motor step 120609.4 = 75.3809 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 22:32:35.448 -07 000000610 INF: Y Motor: After move to 75.380580, error = 0.000279, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm 17-03-17 22:32:35.448 -07 000000610 INF: Y Motor: Position error after settling = 1 encoder counts (0.000 mm), Delta during settling = 3 counts (0.001 mm) 17-03-17 22:32:35.448 -07 000000610 INF: Y Motor: Moved to 75.3809 after 3146 ms 17-03-17 22:32:35.448 -07 000000610 INF: =================== Cycle #65, Flow Cell Temp 60° =================== 17-03-17 22:32:35.448 -07 000000610 INF: =================== Cycle #65, Flow Cell Temp 60°, FC temperature to 60° =================== 17-03-17 22:32:35.448 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 60000000\n [FlowCellTempControl] 17-03-17 22:32:35.458 -07 000000618 INF: FPGA: Recv TEC2TEMP 17-03-17 22:32:35.458 -07 000000610 INF: FPGA: 'TEC2TEMP 0 60000000' command took 1 ms to send, 0 ms to get response, and 3 ms overall 17-03-17 22:32:35.458 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl] 17-03-17 22:32:35.458 -07 000000547 INF: FPGA: Recv TEC2EN 17-03-17 22:32:35.468 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 8 ms overall 17-03-17 22:32:35.468 -07 000000610 INF: =================== Cycle #65, Flow Cell Temp 60° =================== 17-03-17 22:32:35.468 -07 000000610 INF: =================== Cycle #65 =================== 17-03-17 22:32:35.468 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start 17-03-17 22:32:35.468 -07 000000610 INF: ReagentValve: Xmit S\r 17-03-17 22:32:35.498 -07 000000610 INF: ReagentValve: Recv 18\r 17-03-17 22:32:35.498 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 24 to 3. Moving 3 positions. 17-03-17 22:32:35.498 -07 000000610 INF: ReagentValve: Xmit +03\r 17-03-17 22:32:35.798 -07 000000610 INF: ReagentValve: Xmit B\r 17-03-17 22:32:35.818 -07 000000610 INF: ReagentValve: Recv 0278\r 17-03-17 22:32:35.818 -07 000000610 INF: ReagentValve: Move+ from 24 to 3 took 632 steps, expected 612. Error = 20 steps (3.3%) 17-03-17 22:32:35.868 -07 000000610 INF: ReagentValve: Xmit S\r 17-03-17 22:32:35.888 -07 000000610 INF: ReagentValve: Recv 03\r 17-03-17 22:32:35.888 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating 17-03-17 22:32:35.988 -07 000000610 INF: =================== Cycle #65, Pumping Reagent PR2 (3) =================== 17-03-17 22:32:35.988 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1 17-03-17 22:32:35.988 -07 000000610 INF: LanePump: Xmit /1?\r 17-03-17 22:32:36.018 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n 17-03-17 22:32:36.018 -07 000000610 INF: LanePump: Current Position of Pump is: 0 17-03-17 22:32:36.018 -07 000000610 INF: =================== Cycle #65, Pumping Reagent PR2 (3), Aspirating port InputPort =================== 17-03-17 22:32:36.148 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r 17-03-17 22:32:36.188 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n 17-03-17 22:32:36.978 -07 000000551 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 22:32:36.978 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 64. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1016, R2=1046, Total=2062. Warn if over 250 bubbles per interval. 17-03-17 22:32:39.318 -07 000000610 INF: LanePump: Xmit /1Q\r 17-03-17 22:32:39.348 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n 17-03-17 22:32:39.768 -07 000000610 INF: LanePump: Xmit /1Q\r 17-03-17 22:32:39.798 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n 17-03-17 22:32:40.218 -07 000000610 INF: LanePump: Xmit /1Q\r 17-03-17 22:32:40.248 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n 17-03-17 22:32:40.248 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete 17-03-17 22:32:40.248 -07 000000610 INF: =================== Cycle #65, Pumping Reagent PR2 (3) =================== 17-03-17 22:32:40.378 -07 000000610 INF: LanePump: Xmit /1?\r 17-03-17 22:32:40.408 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n 17-03-17 22:32:40.408 -07 000000610 INF: LanePump: Current Position of Pump is: 720 17-03-17 22:32:40.418 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 65, FrontChillerTemperature: 3.974486, 17-03-17 22:32:40.538 -07 000000610 INF: LanePump: Xmit /1?\r 17-03-17 22:32:40.568 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n 17-03-17 22:32:40.568 -07 000000610 INF: LanePump: Current Position of Pump is: 720 17-03-17 22:32:40.568 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution 17-03-17 22:32:40.698 -07 000000610 INF: LanePump: Xmit /1IR\r 17-03-17 22:32:40.728 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n 17-03-17 22:32:41.158 -07 000000610 INF: LanePump: Xmit /1Q\r 17-03-17 22:32:41.188 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n 17-03-17 22:32:41.188 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete 17-03-17 22:32:41.188 -07 000000610 INF: =================== Cycle #65 =================== 17-03-17 22:32:41.978 -07 000000486 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 2 R1 2 17-03-17 22:32:41.978 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 64. Bubbles during last 5000 ms interval: R1=2, R2=2, Total=4. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1018, R2=1048, Total=2066. Warn if over 250 bubbles per interval. 17-03-17 22:32:42.408 -07 000000610 INF: AsyncDelayTimer waited 1213ms 17-03-17 22:32:42.408 -07 000000610 INF: ReagentValve: Go to position 4 - PumpToFlowcell start 17-03-17 22:32:42.408 -07 000000610 INF: ReagentValve: Xmit S\r 17-03-17 22:32:42.428 -07 000000610 INF: ReagentValve: Recv 03\r 17-03-17 22:32:42.428 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 3 to 4. Moving 1 positions. 17-03-17 22:32:42.428 -07 000000610 INF: ReagentValve: Xmit +04\r 17-03-17 22:32:42.558 -07 000000610 INF: ReagentValve: Xmit B\r 17-03-17 22:32:42.578 -07 000000610 INF: ReagentValve: Recv 00CD\r 17-03-17 22:32:42.578 -07 000000610 INF: ReagentValve: Move+ from 3 to 4 took 205 steps, expected 204. Error = 1 steps (0.5%) 17-03-17 22:32:42.628 -07 000000610 INF: ReagentValve: Xmit S\r 17-03-17 22:32:42.648 -07 000000610 INF: ReagentValve: Recv 04\r 17-03-17 22:32:42.648 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating 17-03-17 22:32:42.748 -07 000000610 INF: =================== Cycle #65, Pumping Reagent CMS (4) =================== 17-03-17 22:32:42.748 -07 000000610 INF: LanePump: Pumping from 4, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1 17-03-17 22:32:42.748 -07 000000610 INF: LanePump: Xmit /1?\r 17-03-17 22:32:42.778 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n 17-03-17 22:32:42.778 -07 000000610 INF: LanePump: Current Position of Pump is: 720 17-03-17 22:32:42.778 -07 000000610 INF: =================== Cycle #65, Pumping Reagent CMS (4), Aspirating port InputPort =================== 17-03-17 22:32:42.908 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r 17-03-17 22:32:42.948 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n 17-03-17 22:32:44.388 -07 000000610 INF: LanePump: Xmit /1Q\r 17-03-17 22:32:44.418 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n 17-03-17 22:32:44.838 -07 000000610 INF: LanePump: Xmit /1Q\r 17-03-17 22:32:44.868 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n 17-03-17 22:32:44.868 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete 17-03-17 22:32:44.868 -07 000000610 INF: =================== Cycle #65, Pumping Reagent CMS (4) =================== 17-03-17 22:32:44.998 -07 000000610 INF: LanePump: Xmit /1?\r 17-03-17 22:32:45.028 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n 17-03-17 22:32:45.028 -07 000000610 INF: LanePump: Current Position of Pump is: 990 17-03-17 22:32:45.158 -07 000000610 INF: LanePump: Xmit /1?\r 17-03-17 22:32:45.188 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n 17-03-17 22:32:45.188 -07 000000610 INF: LanePump: Current Position of Pump is: 990 17-03-17 22:32:45.188 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution 17-03-17 22:32:45.318 -07 000000610 INF: LanePump: Xmit /1IR\r 17-03-17 22:32:45.348 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n 17-03-17 22:32:45.778 -07 000000610 INF: LanePump: Xmit /1Q\r 17-03-17 22:32:45.788 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 65, FrontChillerTemperature: 3.963579, 17-03-17 22:32:45.808 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n 17-03-17 22:32:45.808 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete 17-03-17 22:32:45.808 -07 000000610 INF: =================== Cycle #65 =================== 17-03-17 22:32:46.978 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 2 17-03-17 22:32:46.978 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 64. Bubbles during last 5000 ms interval: R1=2, R2=1, Total=3. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1020, R2=1049, Total=2069. Warn if over 250 bubbles per interval. 17-03-17 22:32:47.028 -07 000000610 INF: AsyncDelayTimer waited 1217ms 17-03-17 22:32:47.028 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start 17-03-17 22:32:47.028 -07 000000610 INF: ReagentValve: Xmit S\r 17-03-17 22:32:47.048 -07 000000610 INF: ReagentValve: Recv 04\r 17-03-17 22:32:47.048 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 4 to 3. Moving 1 positions. 17-03-17 22:32:47.048 -07 000000610 INF: ReagentValve: Xmit -03\r 17-03-17 22:32:47.198 -07 000000610 INF: ReagentValve: Xmit B\r 17-03-17 22:32:47.218 -07 000000610 INF: ReagentValve: Recv 00E1\r 17-03-17 22:32:47.218 -07 000000610 INF: ReagentValve: Move- from 4 to 3 took 225 steps, expected 204. Error = 21 steps (10.3%) 17-03-17 22:32:47.268 -07 000000610 INF: ReagentValve: Xmit S\r 17-03-17 22:32:47.288 -07 000000610 INF: ReagentValve: Recv 03\r 17-03-17 22:32:47.288 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating 17-03-17 22:32:47.388 -07 000000610 INF: =================== Cycle #65, Pumping Reagent PR2 (3) =================== 17-03-17 22:32:47.388 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1 17-03-17 22:32:47.388 -07 000000610 INF: LanePump: Xmit /1?\r 17-03-17 22:32:47.418 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n 17-03-17 22:32:47.418 -07 000000610 INF: LanePump: Current Position of Pump is: 990 17-03-17 22:32:47.418 -07 000000610 INF: =================== Cycle #65, Pumping Reagent PR2 (3), Aspirating port InputPort =================== 17-03-17 22:32:47.548 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r 17-03-17 22:32:47.588 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n 17-03-17 22:32:48.458 -07 000000610 INF: LanePump: Xmit /1Q\r 17-03-17 22:32:48.488 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n 17-03-17 22:32:48.488 -07 000000610 INF: LanePump: Waited 900 ms for pump motion to complete 17-03-17 22:32:48.488 -07 000000610 INF: =================== Cycle #65, Pumping Reagent PR2 (3) =================== 17-03-17 22:32:48.618 -07 000000610 INF: LanePump: Xmit /1?\r 17-03-17 22:32:48.648 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n 17-03-17 22:32:48.648 -07 000000610 INF: LanePump: Current Position of Pump is: 1110 17-03-17 22:32:48.778 -07 000000610 INF: LanePump: Xmit /1?\r 17-03-17 22:32:48.808 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n 17-03-17 22:32:48.808 -07 000000610 INF: LanePump: Current Position of Pump is: 1110 17-03-17 22:32:48.808 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution 17-03-17 22:32:48.938 -07 000000610 INF: LanePump: Xmit /1IR\r 17-03-17 22:32:48.968 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n 17-03-17 22:32:49.398 -07 000000610 INF: LanePump: Xmit /1Q\r 17-03-17 22:32:49.428 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n 17-03-17 22:32:49.428 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete 17-03-17 22:32:49.428 -07 000000610 INF: =================== Cycle #65 =================== 17-03-17 22:32:49.428 -07 000000547 INF: WaitCommand(10000) start 17-03-17 22:32:49.428 -07 000000576 INF: =================== Dispense to DispenseAndWait =================== 17-03-17 22:32:49.428 -07 000000576 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort =================== 17-03-17 22:32:50.648 -07 000000576 INF: AsyncDelayTimer waited 1214ms 17-03-17 22:32:50.648 -07 000000576 INF: LanePump: Xmit /1?\r 17-03-17 22:32:50.678 -07 000000576 INF: LanePump: Recv /0`1110(0x03)\r\n 17-03-17 22:32:50.678 -07 000000576 INF: LanePump: Current Position of Pump is: 1110 17-03-17 22:32:50.808 -07 000000576 INF: LanePump: Xmit /1V1500OA0R\r 17-03-17 22:32:50.848 -07 000000576 INF: LanePump: Recv /0@(0x03)\r\n 17-03-17 22:32:51.158 -07 000000551 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 65, FrontChillerTemperature: 3.999021, 17-03-17 22:32:51.978 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 1 17-03-17 22:32:51.978 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 64. Bubbles during last 5000 ms interval: R1=1, R2=1, Total=2. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1021, R2=1050, Total=2071. Warn if over 250 bubbles per interval. 17-03-17 22:32:52.378 -07 000000576 INF: LanePump: Xmit /1Q\r 17-03-17 22:32:52.408 -07 000000576 INF: LanePump: Recv /0@(0x03)\r\n 17-03-17 22:32:52.828 -07 000000576 INF: LanePump: Xmit /1Q\r 17-03-17 22:32:52.858 -07 000000576 INF: LanePump: Recv /0`(0x03)\r\n 17-03-17 22:32:52.858 -07 000000576 INF: LanePump: Waited 2009 ms for pump motion to complete 17-03-17 22:32:52.858 -07 000000576 INF: =================== Dispense to DispenseAndWait =================== 17-03-17 22:32:52.858 -07 000000576 INF: =================== =================== 17-03-17 22:32:56.528 -07 000000627 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 65, FrontChillerTemperature: 3.978563, 17-03-17 22:32:56.978 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 0 17-03-17 22:32:56.978 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 64. Bubbles during last 5000 ms interval: R1=0, R2=1, Total=1. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1021, R2=1051, Total=2072. Warn if over 250 bubbles per interval. 17-03-17 22:32:59.438 -07 000000547 INF: WaitCommand(10000) end 17-03-17 22:32:59.438 -07 000000610 INF: =================== Cycle #65, Pumping Reagent PR2 (3) =================== 17-03-17 22:32:59.438 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 250 µL, calling command Pumping to Flow Cell #1 17-03-17 22:32:59.438 -07 000000610 INF: LanePump: Xmit /1?\r 17-03-17 22:32:59.478 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n 17-03-17 22:32:59.478 -07 000000610 INF: LanePump: Current Position of Pump is: 0 17-03-17 22:32:59.478 -07 000000610 INF: =================== Cycle #65, Pumping Reagent PR2 (3), Aspirating port InputPort =================== 17-03-17 22:32:59.608 -07 000000610 INF: LanePump: Xmit /1V400IP1500R\r 17-03-17 22:32:59.648 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n 17-03-17 22:33:01.898 -07 000000547 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 65, FrontChillerTemperature: 3.999021, 17-03-17 22:33:01.978 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 2 R1 2 17-03-17 22:33:01.978 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 64. Bubbles during last 5000 ms interval: R1=2, R2=2, Total=4. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1023, R2=1053, Total=2076. Warn if over 250 bubbles per interval. 17-03-17 22:33:05.778 -07 000000610 INF: LanePump: Xmit /1Q\r 17-03-17 22:33:05.808 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n 17-03-17 22:33:06.228 -07 000000610 INF: LanePump: Xmit /1Q\r 17-03-17 22:33:06.258 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n 17-03-17 22:33:06.678 -07 000000610 INF: LanePump: Xmit /1Q\r 17-03-17 22:33:06.708 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n 17-03-17 22:33:06.978 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 3 R1 2 17-03-17 22:33:06.978 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 64. Bubbles during last 5000 ms interval: R1=2, R2=3, Total=5. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1025, R2=1056, Total=2081. Warn if over 250 bubbles per interval. 17-03-17 22:33:07.128 -07 000000610 INF: LanePump: Xmit /1Q\r 17-03-17 22:33:07.158 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n 17-03-17 22:33:07.268 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 65, FrontChillerTemperature: 3.979922, 17-03-17 22:33:07.578 -07 000000610 INF: LanePump: Xmit /1Q\r 17-03-17 22:33:07.608 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n 17-03-17 22:33:07.608 -07 000000610 INF: LanePump: Waited 7961 ms for pump motion to complete 17-03-17 22:33:07.608 -07 000000610 INF: =================== Cycle #65, Pumping Reagent PR2 (3) =================== 17-03-17 22:33:07.738 -07 000000610 INF: LanePump: Xmit /1?\r 17-03-17 22:33:07.768 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n 17-03-17 22:33:07.768 -07 000000610 INF: LanePump: Current Position of Pump is: 1500 17-03-17 22:33:07.898 -07 000000610 INF: LanePump: Xmit /1?\r 17-03-17 22:33:07.928 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n 17-03-17 22:33:07.928 -07 000000610 INF: LanePump: Current Position of Pump is: 1500 17-03-17 22:33:07.928 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution 17-03-17 22:33:08.058 -07 000000610 INF: LanePump: Xmit /1IR\r 17-03-17 22:33:08.088 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n 17-03-17 22:33:08.518 -07 000000610 INF: LanePump: Xmit /1Q\r 17-03-17 22:33:08.548 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n 17-03-17 22:33:08.548 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete 17-03-17 22:33:08.548 -07 000000610 INF: =================== Cycle #65 =================== 17-03-17 22:33:09.768 -07 000000610 INF: AsyncDelayTimer waited 1219ms 17-03-17 22:33:09.768 -07 000000610 INF: ReagentValve: Go to position 1 - PumpToFlowcell start 17-03-17 22:33:09.768 -07 000000610 INF: ReagentValve: Xmit S\r 17-03-17 22:33:09.788 -07 000000610 INF: ReagentValve: Recv 03\r 17-03-17 22:33:09.788 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 1. Moving 2 positions. 17-03-17 22:33:09.788 -07 000000610 INF: ReagentValve: Xmit -01\r 17-03-17 22:33:09.998 -07 000000610 INF: ReagentValve: Xmit B\r 17-03-17 22:33:10.018 -07 000000610 INF: ReagentValve: Recv 0198\r 17-03-17 22:33:10.018 -07 000000610 INF: ReagentValve: Move- from 3 to 1 took 408 steps, expected 408. Error = 0 steps (0.0%) 17-03-17 22:33:10.068 -07 000000610 INF: ReagentValve: Xmit S\r 17-03-17 22:33:10.088 -07 000000610 INF: ReagentValve: Recv 01\r 17-03-17 22:33:10.088 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating 17-03-17 22:33:10.188 -07 000000610 INF: =================== Cycle #65, Pumping Reagent IMT (1) =================== 17-03-17 22:33:10.188 -07 000000610 INF: LanePump: Pumping from 1, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1 17-03-17 22:33:10.188 -07 000000610 INF: LanePump: Xmit /1?\r 17-03-17 22:33:10.218 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n 17-03-17 22:33:10.218 -07 000000610 INF: LanePump: Current Position of Pump is: 1500 17-03-17 22:33:10.218 -07 000000610 INF: =================== Cycle #65, Pumping Reagent IMT (1), Aspirating port InputPort =================== 17-03-17 22:33:10.348 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r 17-03-17 22:33:10.388 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n 17-03-17 22:33:11.828 -07 000000610 INF: LanePump: Xmit /1Q\r 17-03-17 22:33:11.858 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n 17-03-17 22:33:11.978 -07 000000458 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 1 17-03-17 22:33:11.988 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 64. Bubbles during last 5000 ms interval: R1=1, R2=0, Total=1. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1026, R2=1056, Total=2082. Warn if over 250 bubbles per interval. 17-03-17 22:33:12.278 -07 000000610 INF: LanePump: Xmit /1Q\r 17-03-17 22:33:12.308 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n 17-03-17 22:33:12.308 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete 17-03-17 22:33:12.308 -07 000000610 INF: =================== Cycle #65, Pumping Reagent IMT (1) =================== 17-03-17 22:33:12.438 -07 000000610 INF: LanePump: Xmit /1?\r 17-03-17 22:33:12.468 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n 17-03-17 22:33:12.468 -07 000000610 INF: LanePump: Current Position of Pump is: 1770 17-03-17 22:33:12.598 -07 000000610 INF: LanePump: Xmit /1?\r 17-03-17 22:33:12.628 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n 17-03-17 22:33:12.628 -07 000000610 INF: LanePump: Current Position of Pump is: 1770 17-03-17 22:33:12.628 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution 17-03-17 22:33:12.638 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 65, FrontChillerTemperature: 3.983999, 17-03-17 22:33:12.758 -07 000000610 INF: LanePump: Xmit /1IR\r 17-03-17 22:33:12.788 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n 17-03-17 22:33:13.218 -07 000000610 INF: LanePump: Xmit /1Q\r 17-03-17 22:33:13.248 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n 17-03-17 22:33:13.248 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete 17-03-17 22:33:13.248 -07 000000610 INF: =================== Cycle #65 =================== 17-03-17 22:33:14.468 -07 000000610 INF: AsyncDelayTimer waited 1219ms 17-03-17 22:33:14.468 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start 17-03-17 22:33:14.468 -07 000000610 INF: ReagentValve: Xmit S\r 17-03-17 22:33:14.488 -07 000000610 INF: ReagentValve: Recv 01\r 17-03-17 22:33:14.488 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 1 to 3. Moving 2 positions. 17-03-17 22:33:14.488 -07 000000610 INF: ReagentValve: Xmit +03\r 17-03-17 22:33:14.718 -07 000000610 INF: ReagentValve: Xmit B\r 17-03-17 22:33:14.738 -07 000000610 INF: ReagentValve: Recv 01AC\r 17-03-17 22:33:14.738 -07 000000610 INF: ReagentValve: Move+ from 1 to 3 took 428 steps, expected 408. Error = 20 steps (4.9%) 17-03-17 22:33:14.788 -07 000000610 INF: ReagentValve: Xmit S\r 17-03-17 22:33:14.808 -07 000000610 INF: ReagentValve: Recv 03\r 17-03-17 22:33:14.808 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating 17-03-17 22:33:14.908 -07 000000610 INF: =================== Cycle #65, Pumping Reagent PR2 (3) =================== 17-03-17 22:33:14.908 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1 17-03-17 22:33:14.908 -07 000000610 INF: LanePump: Xmit /1?\r 17-03-17 22:33:14.938 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n 17-03-17 22:33:14.938 -07 000000610 INF: LanePump: Current Position of Pump is: 1770 17-03-17 22:33:14.938 -07 000000610 INF: =================== Cycle #65, Pumping Reagent PR2 (3), Aspirating port InputPort =================== 17-03-17 22:33:15.068 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r 17-03-17 22:33:15.108 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n 17-03-17 22:33:15.978 -07 000000610 INF: LanePump: Xmit /1Q\r 17-03-17 22:33:16.008 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n 17-03-17 22:33:16.008 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete 17-03-17 22:33:16.008 -07 000000610 INF: =================== Cycle #65, Pumping Reagent PR2 (3) =================== 17-03-17 22:33:16.138 -07 000000610 INF: LanePump: Xmit /1?\r 17-03-17 22:33:16.168 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n 17-03-17 22:33:16.168 -07 000000610 INF: LanePump: Current Position of Pump is: 1890 17-03-17 22:33:16.298 -07 000000610 INF: LanePump: Xmit /1?\r 17-03-17 22:33:16.328 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n 17-03-17 22:33:16.328 -07 000000610 INF: LanePump: Current Position of Pump is: 1890 17-03-17 22:33:16.328 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution 17-03-17 22:33:16.458 -07 000000610 INF: LanePump: Xmit /1IR\r 17-03-17 22:33:16.488 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n 17-03-17 22:33:16.918 -07 000000610 INF: LanePump: Xmit /1Q\r 17-03-17 22:33:16.948 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n 17-03-17 22:33:16.948 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete 17-03-17 22:33:16.948 -07 000000610 INF: =================== Cycle #65 =================== 17-03-17 22:33:16.948 -07 000000610 INF: =================== Cycle #65, Flow Cell Temp 65° =================== 17-03-17 22:33:16.948 -07 000000610 INF: =================== Cycle #65, Flow Cell Temp 65°, FC temperature to 65° =================== 17-03-17 22:33:16.948 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 65000000\n [FlowCellTempControl] 17-03-17 22:33:16.948 -07 000000458 INF: FPGA: Recv TEC2TEMP 17-03-17 22:33:16.958 -07 000000610 INF: FPGA: 'TEC2TEMP 0 65000000' command took 1 ms to send, 0 ms to get response, and 6 ms overall 17-03-17 22:33:16.958 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl] 17-03-17 22:33:16.958 -07 000000462 INF: FPGA: Recv TEC2EN 17-03-17 22:33:16.968 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:33:16.968 -07 000000610 INF: =================== Cycle #65, Flow Cell Temp 65° =================== 17-03-17 22:33:16.968 -07 000000610 INF: =================== Cycle #65 =================== 17-03-17 22:33:16.968 -07 000000610 INF: WaitCommand(30000) start 17-03-17 22:33:16.978 -07 000000551 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 0 17-03-17 22:33:16.988 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 64. Bubbles during last 5000 ms interval: R1=0, R2=1, Total=1. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1026, R2=1057, Total=2083. Warn if over 250 bubbles per interval. 17-03-17 22:33:18.008 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 65, FrontChillerTemperature: 4.000345, 17-03-17 22:33:21.978 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 22:33:21.988 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 64. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1026, R2=1057, Total=2083. Warn if over 250 bubbles per interval. 17-03-17 22:33:23.378 -07 000000627 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 65, FrontChillerTemperature: 4.012614, 17-03-17 22:33:26.988 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 22:33:26.988 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 64. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1026, R2=1057, Total=2083. Warn if over 250 bubbles per interval. 17-03-17 22:33:28.748 -07 000000547 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 65, FrontChillerTemperature: 4.023489, 17-03-17 22:33:31.988 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 22:33:31.988 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 64. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1026, R2=1057, Total=2083. Warn if over 250 bubbles per interval. 17-03-17 22:33:34.128 -07 000000551 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 65, FrontChillerTemperature: 3.986717, 17-03-17 22:33:36.988 -07 000000547 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 22:33:36.988 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 64. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1026, R2=1057, Total=2083. Warn if over 250 bubbles per interval. 17-03-17 22:33:39.488 -07 000000486 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 65, FrontChillerTemperature: 3.985358, 17-03-17 22:33:41.988 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 22:33:41.988 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 64. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1026, R2=1057, Total=2083. Warn if over 250 bubbles per interval. 17-03-17 22:33:44.868 -07 000000458 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 65, FrontChillerTemperature: 3.955391, 17-03-17 22:33:46.978 -07 000000610 INF: WaitCommand(30000) end 17-03-17 22:33:46.978 -07 000000610 INF: =================== Cycle #65, Pumping Reagent PR2 (3) =================== 17-03-17 22:33:46.978 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 5 µL, calling command Pumping to Flow Cell #1 17-03-17 22:33:46.988 -07 000000551 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 22:33:46.988 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 64. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1026, R2=1057, Total=2083. Warn if over 250 bubbles per interval. 17-03-17 22:33:47.078 -07 000000610 INF: LanePump: Xmit /1?\r 17-03-17 22:33:47.108 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n 17-03-17 22:33:47.108 -07 000000610 INF: LanePump: Current Position of Pump is: 1890 17-03-17 22:33:47.108 -07 000000610 INF: =================== Cycle #65, Pumping Reagent PR2 (3), Aspirating port InputPort =================== 17-03-17 22:33:47.238 -07 000000610 INF: LanePump: Xmit /1V400IP30R\r 17-03-17 22:33:47.278 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n 17-03-17 22:33:47.818 -07 000000610 INF: LanePump: Xmit /1Q\r 17-03-17 22:33:47.848 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n 17-03-17 22:33:47.848 -07 000000610 INF: LanePump: Waited 569 ms for pump motion to complete 17-03-17 22:33:47.848 -07 000000610 INF: =================== Cycle #65, Pumping Reagent PR2 (3) =================== 17-03-17 22:33:47.978 -07 000000610 INF: LanePump: Xmit /1?\r 17-03-17 22:33:48.008 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n 17-03-17 22:33:48.008 -07 000000610 INF: LanePump: Current Position of Pump is: 1920 17-03-17 22:33:48.138 -07 000000610 INF: LanePump: Xmit /1?\r 17-03-17 22:33:48.168 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n 17-03-17 22:33:48.168 -07 000000610 INF: LanePump: Current Position of Pump is: 1920 17-03-17 22:33:48.168 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution 17-03-17 22:33:48.298 -07 000000610 INF: LanePump: Xmit /1IR\r 17-03-17 22:33:48.328 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n 17-03-17 22:33:48.758 -07 000000610 INF: LanePump: Xmit /1Q\r 17-03-17 22:33:48.788 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n 17-03-17 22:33:48.788 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete 17-03-17 22:33:48.788 -07 000000610 INF: =================== Cycle #65 =================== 17-03-17 22:33:48.788 -07 000000486 INF: WaitCommand(30000) start 17-03-17 22:33:48.788 -07 000000547 INF: =================== Dispense to DispenseAndWait =================== 17-03-17 22:33:48.788 -07 000000547 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort =================== 17-03-17 22:33:50.008 -07 000000547 INF: AsyncDelayTimer waited 1216ms 17-03-17 22:33:50.008 -07 000000547 INF: LanePump: Xmit /1?\r 17-03-17 22:33:50.038 -07 000000547 INF: LanePump: Recv /0`1920(0x03)\r\n 17-03-17 22:33:50.038 -07 000000547 INF: LanePump: Current Position of Pump is: 1920 17-03-17 22:33:50.168 -07 000000547 INF: LanePump: Xmit /1V1500OA0R\r 17-03-17 22:33:50.208 -07 000000547 INF: LanePump: Recv /0@(0x03)\r\n 17-03-17 22:33:50.228 -07 000000458 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 65, FrontChillerTemperature: 3.974486, 17-03-17 22:33:51.988 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 22:33:51.988 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 64. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1026, R2=1057, Total=2083. Warn if over 250 bubbles per interval. 17-03-17 22:33:52.548 -07 000000547 INF: LanePump: Xmit /1Q\r 17-03-17 22:33:52.578 -07 000000547 INF: LanePump: Recv /0@(0x03)\r\n 17-03-17 22:33:52.998 -07 000000547 INF: LanePump: Xmit /1Q\r 17-03-17 22:33:53.028 -07 000000547 INF: LanePump: Recv /0`(0x03)\r\n 17-03-17 22:33:53.028 -07 000000547 INF: LanePump: Waited 2819 ms for pump motion to complete 17-03-17 22:33:53.028 -07 000000547 INF: =================== Dispense to DispenseAndWait =================== 17-03-17 22:33:53.028 -07 000000547 INF: =================== =================== 17-03-17 22:33:55.598 -07 000000551 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 65, FrontChillerTemperature: 4.005817, 17-03-17 22:33:56.988 -07 000000547 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 22:33:56.988 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 64. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1026, R2=1057, Total=2083. Warn if over 250 bubbles per interval. 17-03-17 22:34:00.968 -07 000000551 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 65, FrontChillerTemperature: 4.023489, 17-03-17 22:34:01.988 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 22:34:01.988 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 64. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1026, R2=1057, Total=2083. Warn if over 250 bubbles per interval. 17-03-17 22:34:06.338 -07 000000551 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 65, FrontChillerTemperature: 4.019446, 17-03-17 22:34:06.988 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 22:34:06.988 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 64. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1026, R2=1057, Total=2083. Warn if over 250 bubbles per interval. 17-03-17 22:34:11.708 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 65, FrontChillerTemperature: 4.039839, 17-03-17 22:34:11.988 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 22:34:11.988 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 64. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1026, R2=1057, Total=2083. Warn if over 250 bubbles per interval. 17-03-17 22:34:16.988 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 22:34:16.988 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 64. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1026, R2=1057, Total=2083. Warn if over 250 bubbles per interval. 17-03-17 22:34:17.078 -07 000000458 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 65, FrontChillerTemperature: 4.026244, 17-03-17 22:34:18.798 -07 000000486 INF: WaitCommand(30000) end 17-03-17 22:34:18.798 -07 000000610 INF: =================== Cycle #65, Flow Cell Temp 22° =================== 17-03-17 22:34:18.798 -07 000000610 INF: =================== Cycle #65, Flow Cell Temp 22°, FC temperature to 22° =================== 17-03-17 22:34:18.798 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 22000000\n [FlowCellTempControl] 17-03-17 22:34:18.798 -07 000000576 INF: FPGA: Recv TEC2TEMP 17-03-17 22:34:18.808 -07 000000610 INF: FPGA: 'TEC2TEMP 0 22000000' command took 1 ms to send, 0 ms to get response, and 4 ms overall 17-03-17 22:34:18.808 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl] 17-03-17 22:34:18.808 -07 000000547 INF: FPGA: Recv TEC2EN 17-03-17 22:34:18.818 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:34:18.818 -07 000000610 INF: =================== Cycle #65, Flow Cell Temp 22° =================== 17-03-17 22:34:18.818 -07 000000610 INF: =================== Cycle #65 =================== 17-03-17 22:34:18.818 -07 000000610 INF: =================== Cycle #65, Pumping Reagent PR2 (3) =================== 17-03-17 22:34:18.818 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1 17-03-17 22:34:18.818 -07 000000610 INF: LanePump: Xmit /1?\r 17-03-17 22:34:18.848 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n 17-03-17 22:34:18.848 -07 000000610 INF: LanePump: Current Position of Pump is: 0 17-03-17 22:34:18.848 -07 000000610 INF: =================== Cycle #65, Pumping Reagent PR2 (3), Aspirating port InputPort =================== 17-03-17 22:34:18.978 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r 17-03-17 22:34:19.018 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n 17-03-17 22:34:21.988 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 22:34:21.988 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 64. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1026, R2=1057, Total=2083. Warn if over 250 bubbles per interval. 17-03-17 22:34:22.148 -07 000000610 INF: LanePump: Xmit /1Q\r 17-03-17 22:34:22.178 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n 17-03-17 22:34:22.458 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 65, FrontChillerTemperature: 4.000345, 17-03-17 22:34:22.598 -07 000000610 INF: LanePump: Xmit /1Q\r 17-03-17 22:34:22.628 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n 17-03-17 22:34:23.048 -07 000000610 INF: LanePump: Xmit /1Q\r 17-03-17 22:34:23.078 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n 17-03-17 22:34:23.078 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete 17-03-17 22:34:23.078 -07 000000610 INF: =================== Cycle #65, Pumping Reagent PR2 (3) =================== 17-03-17 22:34:23.208 -07 000000610 INF: LanePump: Xmit /1?\r 17-03-17 22:34:23.238 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n 17-03-17 22:34:23.238 -07 000000610 INF: LanePump: Current Position of Pump is: 720 17-03-17 22:34:23.368 -07 000000610 INF: LanePump: Xmit /1?\r 17-03-17 22:34:23.398 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n 17-03-17 22:34:23.398 -07 000000610 INF: LanePump: Current Position of Pump is: 720 17-03-17 22:34:23.398 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution 17-03-17 22:34:23.528 -07 000000610 INF: LanePump: Xmit /1IR\r 17-03-17 22:34:23.558 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n 17-03-17 22:34:23.988 -07 000000610 INF: LanePump: Xmit /1Q\r 17-03-17 22:34:24.018 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n 17-03-17 22:34:24.018 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete 17-03-17 22:34:24.018 -07 000000610 INF: =================== Cycle #65 =================== 17-03-17 22:34:25.238 -07 000000610 INF: AsyncDelayTimer waited 1218ms 17-03-17 22:34:25.238 -07 000000610 INF: ReagentValve: Go to position 2 - PumpToFlowcell start 17-03-17 22:34:25.238 -07 000000610 INF: ReagentValve: Xmit S\r 17-03-17 22:34:25.258 -07 000000610 INF: ReagentValve: Recv 03\r 17-03-17 22:34:25.258 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 2. Moving 1 positions. 17-03-17 22:34:25.258 -07 000000610 INF: ReagentValve: Xmit -02\r 17-03-17 22:34:25.408 -07 000000610 INF: ReagentValve: Xmit B\r 17-03-17 22:34:25.428 -07 000000610 INF: ReagentValve: Recv 00E3\r 17-03-17 22:34:25.428 -07 000000610 INF: ReagentValve: Move- from 3 to 2 took 227 steps, expected 204. Error = 23 steps (11.3%) 17-03-17 22:34:25.478 -07 000000610 INF: ReagentValve: Xmit S\r 17-03-17 22:34:25.498 -07 000000610 INF: ReagentValve: Recv 02\r 17-03-17 22:34:25.498 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating 17-03-17 22:34:25.598 -07 000000610 INF: =================== Cycle #65, Pumping Reagent USM (2) =================== 17-03-17 22:34:25.598 -07 000000610 INF: LanePump: Pumping from 2, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1 17-03-17 22:34:25.598 -07 000000610 INF: LanePump: Xmit /1?\r 17-03-17 22:34:25.628 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n 17-03-17 22:34:25.628 -07 000000610 INF: LanePump: Current Position of Pump is: 720 17-03-17 22:34:25.628 -07 000000610 INF: =================== Cycle #65, Pumping Reagent USM (2), Aspirating port InputPort =================== 17-03-17 22:34:25.758 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r 17-03-17 22:34:25.798 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n 17-03-17 22:34:26.988 -07 000000547 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 22:34:26.988 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 64. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1026, R2=1057, Total=2083. Warn if over 250 bubbles per interval. 17-03-17 22:34:27.238 -07 000000610 INF: LanePump: Xmit /1Q\r 17-03-17 22:34:27.268 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n 17-03-17 22:34:27.688 -07 000000610 INF: LanePump: Xmit /1Q\r 17-03-17 22:34:27.718 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n 17-03-17 22:34:27.718 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete 17-03-17 22:34:27.718 -07 000000610 INF: =================== Cycle #65, Pumping Reagent USM (2) =================== 17-03-17 22:34:27.818 -07 000000627 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 65, FrontChillerTemperature: 4.011254, 17-03-17 22:34:27.848 -07 000000610 INF: LanePump: Xmit /1?\r 17-03-17 22:34:27.878 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n 17-03-17 22:34:27.878 -07 000000610 INF: LanePump: Current Position of Pump is: 990 17-03-17 22:34:28.008 -07 000000610 INF: LanePump: Xmit /1?\r 17-03-17 22:34:28.038 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n 17-03-17 22:34:28.038 -07 000000610 INF: LanePump: Current Position of Pump is: 990 17-03-17 22:34:28.038 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution 17-03-17 22:34:28.168 -07 000000610 INF: LanePump: Xmit /1IR\r 17-03-17 22:34:28.198 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n 17-03-17 22:34:28.628 -07 000000610 INF: LanePump: Xmit /1Q\r 17-03-17 22:34:28.658 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n 17-03-17 22:34:28.658 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete 17-03-17 22:34:28.658 -07 000000610 INF: =================== Cycle #65 =================== 17-03-17 22:34:29.878 -07 000000610 INF: AsyncDelayTimer waited 1219ms 17-03-17 22:34:29.878 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start 17-03-17 22:34:29.878 -07 000000610 INF: ReagentValve: Xmit S\r 17-03-17 22:34:29.898 -07 000000610 INF: ReagentValve: Recv 02\r 17-03-17 22:34:29.898 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 2 to 3. Moving 1 positions. 17-03-17 22:34:29.898 -07 000000610 INF: ReagentValve: Xmit +03\r 17-03-17 22:34:30.048 -07 000000610 INF: ReagentValve: Xmit B\r 17-03-17 22:34:30.068 -07 000000610 INF: ReagentValve: Recv 00E3\r 17-03-17 22:34:30.068 -07 000000610 INF: ReagentValve: Move+ from 2 to 3 took 227 steps, expected 204. Error = 23 steps (11.3%) 17-03-17 22:34:30.118 -07 000000610 INF: ReagentValve: Xmit S\r 17-03-17 22:34:30.138 -07 000000610 INF: ReagentValve: Recv 03\r 17-03-17 22:34:30.138 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating 17-03-17 22:34:30.238 -07 000000610 INF: =================== Cycle #65, Pumping Reagent PR2 (3) =================== 17-03-17 22:34:30.238 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1 17-03-17 22:34:30.238 -07 000000610 INF: LanePump: Xmit /1?\r 17-03-17 22:34:30.268 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n 17-03-17 22:34:30.268 -07 000000610 INF: LanePump: Current Position of Pump is: 990 17-03-17 22:34:30.268 -07 000000610 INF: =================== Cycle #65, Pumping Reagent PR2 (3), Aspirating port InputPort =================== 17-03-17 22:34:30.398 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r 17-03-17 22:34:30.438 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n 17-03-17 22:34:31.308 -07 000000610 INF: LanePump: Xmit /1Q\r 17-03-17 22:34:31.338 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n 17-03-17 22:34:31.338 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete 17-03-17 22:34:31.338 -07 000000610 INF: =================== Cycle #65, Pumping Reagent PR2 (3) =================== 17-03-17 22:34:31.468 -07 000000610 INF: LanePump: Xmit /1?\r 17-03-17 22:34:31.498 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n 17-03-17 22:34:31.498 -07 000000610 INF: LanePump: Current Position of Pump is: 1110 17-03-17 22:34:31.628 -07 000000610 INF: LanePump: Xmit /1?\r 17-03-17 22:34:31.658 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n 17-03-17 22:34:31.658 -07 000000610 INF: LanePump: Current Position of Pump is: 1110 17-03-17 22:34:31.658 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution 17-03-17 22:34:31.788 -07 000000610 INF: LanePump: Xmit /1IR\r 17-03-17 22:34:31.818 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n 17-03-17 22:34:31.988 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 22:34:31.988 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 64. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1026, R2=1057, Total=2083. Warn if over 250 bubbles per interval. 17-03-17 22:34:32.248 -07 000000610 INF: LanePump: Xmit /1Q\r 17-03-17 22:34:32.278 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n 17-03-17 22:34:32.278 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete 17-03-17 22:34:32.278 -07 000000610 INF: =================== Cycle #65 =================== 17-03-17 22:34:32.278 -07 000000547 INF: =================== Dispense to DispenseAndWait =================== 17-03-17 22:34:32.278 -07 000000627 INF: WaitCommand(10000) start 17-03-17 22:34:32.278 -07 000000547 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort =================== 17-03-17 22:34:33.188 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 65, FrontChillerTemperature: 4.007176, 17-03-17 22:34:33.498 -07 000000547 INF: AsyncDelayTimer waited 1215ms 17-03-17 22:34:33.498 -07 000000547 INF: LanePump: Xmit /1?\r 17-03-17 22:34:33.528 -07 000000547 INF: LanePump: Recv /0`1110(0x03)\r\n 17-03-17 22:34:33.528 -07 000000547 INF: LanePump: Current Position of Pump is: 1110 17-03-17 22:34:33.658 -07 000000547 INF: LanePump: Xmit /1V1500OA0R\r 17-03-17 22:34:33.698 -07 000000547 INF: LanePump: Recv /0@(0x03)\r\n 17-03-17 22:34:35.228 -07 000000547 INF: LanePump: Xmit /1Q\r 17-03-17 22:34:35.258 -07 000000547 INF: LanePump: Recv /0@(0x03)\r\n 17-03-17 22:34:35.678 -07 000000547 INF: LanePump: Xmit /1Q\r 17-03-17 22:34:35.708 -07 000000547 INF: LanePump: Recv /0`(0x03)\r\n 17-03-17 22:34:35.708 -07 000000547 INF: LanePump: Waited 2009 ms for pump motion to complete 17-03-17 22:34:35.708 -07 000000547 INF: =================== Dispense to DispenseAndWait =================== 17-03-17 22:34:35.708 -07 000000547 INF: =================== =================== 17-03-17 22:34:36.988 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 22:34:36.988 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 64. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1026, R2=1057, Total=2083. Warn if over 250 bubbles per interval. 17-03-17 22:34:38.558 -07 000000551 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 65, FrontChillerTemperature: 4.03576, 17-03-17 22:34:41.988 -07 000000551 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 22:34:41.988 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 64. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1026, R2=1057, Total=2083. Warn if over 250 bubbles per interval. 17-03-17 22:34:42.288 -07 000000627 INF: WaitCommand(10000) end 17-03-17 22:34:42.288 -07 000000610 INF: =================== Cycle #65, Imaging =================== 17-03-17 22:34:42.288 -07 000000610 INF: Imaging Cycle 65: ScanTilesCommand Cycle 65 time start. 17-03-17 22:34:42.288 -07 000000610 INF: ReagentValve: Go to position 24 (Plug) - Start of ScanTilesCommand 17-03-17 22:34:42.288 -07 000000610 INF: ReagentValve: Xmit S\r 17-03-17 22:34:42.318 -07 000000610 INF: ReagentValve: Recv 03\r 17-03-17 22:34:42.318 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 24. Moving 3 positions. 17-03-17 22:34:42.318 -07 000000610 INF: ReagentValve: Xmit -18\r 17-03-17 22:34:42.618 -07 000000610 INF: ReagentValve: Xmit B\r 17-03-17 22:34:42.638 -07 000000610 INF: ReagentValve: Recv 0278\r 17-03-17 22:34:42.638 -07 000000610 INF: ReagentValve: Move- from 3 to 24 took 632 steps, expected 612. Error = 20 steps (3.3%) 17-03-17 22:34:42.688 -07 000000610 INF: ReagentValve: Xmit S\r 17-03-17 22:34:42.708 -07 000000610 INF: ReagentValve: Recv 18\r 17-03-17 22:34:42.708 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 22:34:42.708 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 22:34:42.708 -07 000000576 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms start. 17-03-17 22:34:42.708 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 22:34:42.708 -07 000000576 INF: FPGA: Xmit EXLED1ON\n [RedLED] 17-03-17 22:34:42.718 -07 000000458 INF: FPGA: Recv EXLED1ON 17-03-17 22:34:42.718 -07 000000576 INF: FPGA: 'EXLED1ON' command took 0 ms to send, 0 ms to get response, and 2 ms overall 17-03-17 22:34:42.718 -07 000000576 INF: FPGA: Xmit EXLED1ADCR\n [RedLED] 17-03-17 22:34:42.718 -07 000000551 INF: FPGA: Recv EXLED1ADCR 23189 17-03-17 22:34:42.728 -07 000000576 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:34:42.728 -07 000000576 INF: RedLED: Using Red data: Photodiode ADC 23189 --> 7.4 mW (old method), or 205.5 mW (new method). Difference = 198.1 mW 17-03-17 22:34:42.728 -07 000000576 INF: FPGA: Xmit EXLED1OFF\n [RedLED] 17-03-17 22:34:42.728 -07 000000462 INF: FPGA: Recv EXLED1OFF 17-03-17 22:34:42.738 -07 000000576 INF: FPGA: 'EXLED1OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:34:42.738 -07 000000576 INF: RedLED: LED was on for 19 ms 17-03-17 22:34:42.738 -07 000000576 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms end. Duration was 23 ms. 17-03-17 22:34:42.738 -07 000000576 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms start. 17-03-17 22:34:42.738 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 22:34:42.738 -07 000000576 INF: FPGA: Xmit EXLED2ON\n [GreenLED] 17-03-17 22:34:42.738 -07 000000627 INF: FPGA: Recv EXLED2ON 17-03-17 22:34:42.748 -07 000000576 INF: FPGA: 'EXLED2ON' command took 0 ms to send, 0 ms to get response, and 7 ms overall 17-03-17 22:34:42.748 -07 000000576 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED] 17-03-17 22:34:42.748 -07 000000458 INF: FPGA: Recv EXLED1ADCR 2100 17-03-17 22:34:42.758 -07 000000576 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:34:42.758 -07 000000576 INF: GreenLED: Using Green data: Photodiode ADC 2100 --> 0.9 mW (old method), or 182.5 mW (new method). Difference = 181.5 mW 17-03-17 22:34:42.758 -07 000000576 INF: FPGA: Xmit EXLED2OFF\n [GreenLED] 17-03-17 22:34:42.758 -07 000000382 INF: FPGA: Recv EXLED2OFF 17-03-17 22:34:42.768 -07 000000576 INF: FPGA: 'EXLED2OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:34:42.768 -07 000000576 INF: GreenLED: LED was on for 20 ms 17-03-17 22:34:42.768 -07 000000576 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms end. Duration was 28 ms. 17-03-17 22:34:42.768 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator] 17-03-17 22:34:42.768 -07 000000486 INF: FPGA: Recv EMCUR 17-03-17 22:34:42.778 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-17 22:34:42.778 -07 000000610 INF: FPGA: Xmit EMOUT 20 70\n [Compensator] 17-03-17 22:34:43.278 -07 000000547 INF: FPGA: Recv EMOUT 17-03-17 22:34:43.278 -07 000000610 INF: FPGA: 'EMOUT 20 70' command took 0 ms to send, 493 ms to get response, and 502 ms overall 17-03-17 22:34:43.278 -07 000000610 INF: FPGA: Xmit EMCUR 75\n [Compensator] 17-03-17 22:34:43.278 -07 000000627 INF: FPGA: Recv EMCUR 17-03-17 22:34:43.288 -07 000000610 INF: FPGA: 'EMCUR 75' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-17 22:34:43.288 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880 17-03-17 22:34:43.288 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 75.380859375, Z-Position -0.127704771762019. ------ 17-03-17 22:34:43.288 -07 000000486 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 22:34:43.288 -07 000000551 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.17943 mm 17-03-17 22:34:43.288 -07 000000551 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-17 22:34:43.288 -07 000000462 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True) 17-03-17 22:34:43.288 -07 000000462 INF: Y Motor: Moving to 59.9126 mm, started at 75.3809 mm, delta = -15.4683 mm 17-03-17 22:34:43.288 -07 000000382 INF: FPGA: Recv FOCMRRCUR 17-03-17 22:34:43.288 -07 000000458 INF: Z Motor: Entering MoveAbsStepped (DAC = 39196, sync = True, waitForSettling = False) 17-03-17 22:34:43.288 -07 000000458 INF: Z Motor: Moving to -0.179428 mm, started at -0.127705 mm, distance = -51.72 um 17-03-17 22:34:43.298 -07 000000486 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall 17-03-17 22:34:43.298 -07 000000458 INF: FPGA: Xmit ZDACW 39196\n [Z Motor] 17-03-17 22:34:43.298 -07 000000547 INF: FPGA: Recv ZDACW 17-03-17 22:34:43.308 -07 000000458 INF: FPGA: 'ZDACW 39196' command took 0 ms to send, 0 ms to get response, and 11 ms overall 17-03-17 22:34:43.308 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 22:34:43.308 -07 000000547 INF: FPGA: Recv YRDPOS 154381 17-03-17 22:34:43.318 -07 000000486 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror] 17-03-17 22:34:43.318 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 22 ms overall 17-03-17 22:34:43.318 -07 000000462 INF: Y Motor: Encoder = 154381 = motor step 120610.2 = 75.3813 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 22:34:43.318 -07 000000462 INF: Y Motor: Last commanded position = 75.3806 mm (120608.9 steps), delta from last commanded position = -15.4680 mm (-24748.8 steps). UsingTableMove = False 17-03-17 22:34:43.318 -07 000000462 INF: Y Motor: Moving to 122701 encoder counts 17-03-17 22:34:43.328 -07 000000458 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 22:34:43.328 -07 000000547 INF: FPGA: Recv ZDACR 39196 17-03-17 22:34:43.338 -07 000000458 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall 17-03-17 22:34:43.338 -07 000000462 INF: FPGA: Xmit YMVTO 122701\n [Y Motor] 17-03-17 22:34:43.338 -07 000000458 INF: Z Motor: MoveAbsStepped took 43 ms (did NOT wait for settling yet)) 17-03-17 22:34:43.518 -07 000000382 INF: FPGA: Recv FOCMRRFOC 17-03-17 22:34:43.518 -07 000000486 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall 17-03-17 22:34:43.928 -07 000000547 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 65, FrontChillerTemperature: 3.994908, 17-03-17 22:34:45.018 -07 000000458 INF: FPGA: Recv YMVTO 122703 24777 17-03-17 22:34:45.018 -07 000000462 INF: FPGA: 'YMVTO 122701' command took 2 ms to send, 1678 ms to get response, and 1705 ms overall 17-03-17 22:34:45.018 -07 000000462 INF: Y Motor: Position error before settling = 2 encoder counts (0.001 mm) 17-03-17 22:34:45.018 -07 000000462 INF: Y Motor: To move from 75.381 to 59.913 (-15.468 mm) should take 24750 steps, but required 24777 steps (15.486 mm). Slippage = 0.017 mm (0.00%). 17-03-17 22:34:45.018 -07 000000462 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1705 ms, distance = 15.468 mm, average velocity = 9.072 mm/sec 17-03-17 22:34:46.988 -07 000000486 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 22:34:46.988 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 64. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1026, R2=1057, Total=2083. Warn if over 250 bubbles per interval. 17-03-17 22:34:47.868 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 22:34:47.868 -07 000000547 INF: FPGA: Recv YRDPOS 122696 17-03-17 22:34:47.878 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 22:34:47.878 -07 000000462 INF: Y Motor: Encoder = 122696 = motor step 95856.3 = 59.9102 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 22:34:47.898 -07 000000462 INF: Y Motor: After move to 59.912609, error = -0.002453, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm 17-03-17 22:34:47.898 -07 000000462 INF: Y Motor: Position error after settling = -5 encoder counts (-0.002 mm), Delta during settling = -7 counts (-0.003 mm) 17-03-17 22:34:47.898 -07 000000462 INF: Y Motor: Moved to 59.9102 after 4608 ms 17-03-17 22:34:47.898 -07 000000551 INF: Z Motor: EndOfMoveAbsStepped: target = -0.179428 mm (DAC = 39196) 17-03-17 22:34:47.898 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:34:47.908 -07 000000486 INF: FPGA: Recv ZSGSRD 37222 17-03-17 22:34:47.908 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 3 ms overall 17-03-17 22:34:47.908 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:34:47.908 -07 000000462 INF: FPGA: Recv ZSGSRD 37219 17-03-17 22:34:47.918 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall 17-03-17 22:34:47.918 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:34:47.918 -07 000000482 INF: FPGA: Recv ZSGSRD 37222 17-03-17 22:34:47.928 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:34:47.928 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:34:47.928 -07 000000576 INF: FPGA: Recv ZSGSRD 37222 17-03-17 22:34:47.938 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:34:47.938 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:34:47.938 -07 000000627 INF: FPGA: Recv ZSGSRD 37224 17-03-17 22:34:47.948 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall 17-03-17 22:34:47.948 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:34:47.948 -07 000000480 INF: FPGA: Recv ZSGSRD 37227 17-03-17 22:34:47.958 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:34:47.958 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:34:47.958 -07 000000627 INF: FPGA: Recv ZSGSRD 37218 17-03-17 22:34:47.968 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:34:47.968 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:34:47.968 -07 000000480 INF: FPGA: Recv ZSGSRD 37227 17-03-17 22:34:47.978 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:34:47.978 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:34:47.978 -07 000000482 INF: FPGA: Recv ZSGSRD 37222 17-03-17 22:34:47.988 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:34:47.988 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:34:47.988 -07 000000480 INF: FPGA: Recv ZSGSRD 37216 17-03-17 22:34:47.998 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:34:47.998 -07 000000551 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 22:34:47.998 -07 000000458 INF: FPGA: Recv ZPIEZORD 33686 17-03-17 22:34:48.008 -07 000000551 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:34:48.008 -07 000000551 INF: Z Motor: Piezo is near 52.0 V (nominally 0 to 100 V), expect near 59.8 V, since DAC is at 5.981 V. Piezo Error = -7.8 V. 17-03-17 22:34:48.008 -07 000000551 INF: Z Motor: ReadAdcAverage: Commanded Z = -179.4 um, Read 10 ADC samples: Avg = 37222 (-178.5 uncal um), Error = 0.9 uncal um, Median = 37222 (-178.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 37216 (-178.5 uncal um), Max = 37227 (-178.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um) 17-03-17 22:34:48.008 -07 000000551 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37222, posNoise = 5, negNoise = 6 17-03-17 22:34:48.008 -07 000000551 INF: Z Motor: After move to -0.179428, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 22:34:48.008 -07 000000551 INF: Z Motor: Settle wait time = 4610 ms, measure time = 101 ms (allowed 150 ms), total time = 4711 ms 17-03-17 22:34:48.008 -07 000000551 INF: Z Motor: Waiting extra 49 ms after reading position to reach expected total of 150 ms 17-03-17 22:34:48.058 -07 000000551 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4764 ms 17-03-17 22:34:48.058 -07 000000551 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-17 22:34:48.058 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 22:34:48.058 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 22:34:48.058 -07 000000547 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 22:34:48.058 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 22:34:48.058 -07 000000627 INF: Disarm and arm camera sensor 0: ROITrigger start. 17-03-17 22:34:48.058 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 22:34:48.058 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms. 17-03-17 22:34:48.058 -07 000000627 INF: Camera: sBCa_SetPowerMode(785074288, 1) start. 17-03-17 22:34:48.088 -07 000000627 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 23 ms. 17-03-17 22:34:48.088 -07 000000627 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start. 17-03-17 22:34:48.088 -07 000000627 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms. 17-03-17 22:34:48.088 -07 000000627 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start. 17-03-17 22:34:48.108 -07 000000627 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms. 17-03-17 22:34:48.108 -07 000000627 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 44 ms. 17-03-17 22:34:48.108 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera] 17-03-17 22:34:48.148 -07 000000458 INF: FPGA: Recv @CAMSNAP turning led on 40 17-03-17 22:34:48.348 -07 000000551 INF: FPGA: Recv @CAMSNAP img rdy 240 17-03-17 22:34:48.348 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240 17-03-17 22:34:48.348 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start. 17-03-17 22:34:48.348 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1410451104, 0x0, 559484976) start. 17-03-17 22:34:48.388 -07 000000576 INF: FPGA: Recv @CAMSNAP 280 17-03-17 22:34:48.388 -07 000000551 INF: FPGA: Recv CAMSNAP 17-03-17 22:34:48.388 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 285 ms overall 17-03-17 22:34:48.478 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1410451104, 0x0, 559484976) end. Duration was 124 ms. 17-03-17 22:34:48.478 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-17 22:34:48.478 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms. 17-03-17 22:34:48.478 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms. 17-03-17 22:34:48.588 -07 000000627 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 22:34:48.588 -07 000000480 INF: Image SNR check: start 17-03-17 22:34:48.588 -07 000000462 INF: FPGA: Recv FOCMRRCUR 17-03-17 22:34:48.598 -07 000000627 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-17 22:34:48.598 -07 000000627 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror] 17-03-17 22:34:48.598 -07 000000480 INF: Image SNR check: pass [peak (Max-Min)=58.22] 17-03-17 22:34:48.598 -07 000000480 INF: Autofocus start 17-03-17 22:34:48.598 -07 000000480 INF: MeasureProfile start 17-03-17 22:34:48.618 -07 000000480 INF: MeasureProfile done 17-03-17 22:34:48.618 -07 000000480 INF: X=0 Z correction [um]=-0.0713522 17-03-17 22:34:48.618 -07 000000480 INF: Autofocus finished 17-03-17 22:34:48.798 -07 000000382 INF: FPGA: Recv FOCMRRIMG 17-03-17 22:34:48.798 -07 000000627 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall 17-03-17 22:34:48.798 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.91015625, Z-position -0.179445376351761. ---------- 17-03-17 22:34:48.798 -07 000000610 INF: Cycle 65 Tile 1 Exposure Settings A 455 G 219 T 219 C 455 17-03-17 22:34:48.808 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37693, sync = True, waitForSettling = True) 17-03-17 22:34:48.808 -07 000000610 INF: Z Motor: Moving to -0.172547 mm, started at -0.179445 mm, distance = 6.90 um 17-03-17 22:34:48.808 -07 000000610 INF: FPGA: Xmit ZDACW 37693\n [Z Motor] 17-03-17 22:34:48.808 -07 000000551 INF: FPGA: Recv ZDACW 17-03-17 22:34:48.818 -07 000000610 INF: FPGA: 'ZDACW 37693' command took 0 ms to send, 0 ms to get response, and 8 ms overall 17-03-17 22:34:48.818 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 22:34:48.818 -07 000000551 INF: FPGA: Recv ZDACR 37693 17-03-17 22:34:48.828 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:34:48.828 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-17 22:34:48.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:34:48.978 -07 000000486 INF: FPGA: Recv ZSGSRD 36152 17-03-17 22:34:48.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:34:48.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:34:48.988 -07 000000576 INF: FPGA: Recv ZSGSRD 36153 17-03-17 22:34:48.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:34:49.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:34:49.008 -07 000000576 INF: FPGA: Recv ZSGSRD 36150 17-03-17 22:34:49.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall 17-03-17 22:34:49.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:34:49.018 -07 000000482 INF: FPGA: Recv ZSGSRD 36147 17-03-17 22:34:49.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:34:49.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:34:49.028 -07 000000576 INF: FPGA: Recv ZSGSRD 36148 17-03-17 22:34:49.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:34:49.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:34:49.038 -07 000000482 INF: FPGA: Recv ZSGSRD 36151 17-03-17 22:34:49.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:34:49.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:34:49.048 -07 000000482 INF: FPGA: Recv ZSGSRD 36146 17-03-17 22:34:49.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:34:49.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:34:49.058 -07 000000486 INF: FPGA: Recv ZSGSRD 36150 17-03-17 22:34:49.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:34:49.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:34:49.068 -07 000000486 INF: FPGA: Recv ZSGSRD 36150 17-03-17 22:34:49.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:34:49.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:34:49.078 -07 000000486 INF: FPGA: Recv ZSGSRD 36146 17-03-17 22:34:49.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:34:49.088 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 22:34:49.088 -07 000000486 INF: FPGA: Recv ZPIEZORD 32259 17-03-17 22:34:49.098 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:34:49.098 -07 000000610 INF: Z Motor: Piezo is near 48.9 V (nominally 0 to 100 V), expect near 57.5 V, since DAC is at 5.752 V. Piezo Error = -8.6 V. 17-03-17 22:34:49.098 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.5 um, Read 10 ADC samples: Avg = 36149 (-171.7 uncal um), Error = 0.9 uncal um, Median = 36150 (-171.7 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 36146 (-171.7 uncal um), Max = 36153 (-171.7 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um) 17-03-17 22:34:49.098 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36149, posNoise = 4, negNoise = 3 17-03-17 22:34:49.098 -07 000000610 INF: Z Motor: After move to -0.172547, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 22:34:49.098 -07 000000610 INF: Z Motor: MoveAbsStepped took 289 ms) 17-03-17 22:34:49.098 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 22:34:49.098 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 22:34:49.098 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 22:34:49.098 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-17 22:34:49.098 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 22:34:49.098 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 22:34:49.098 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 22:34:49.098 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-17 22:34:49.098 -07 000000547 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-17 22:34:49.098 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-17 22:34:49.098 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms. 17-03-17 22:34:49.098 -07 000000547 INF: Camera: sBCa_SetPowerMode(785074704, 1) start. 17-03-17 22:34:49.108 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms. 17-03-17 22:34:49.108 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-17 22:34:49.118 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms. 17-03-17 22:34:49.118 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms. 17-03-17 22:34:49.128 -07 000000547 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 22 ms. 17-03-17 22:34:49.128 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-17 22:34:49.128 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms. 17-03-17 22:34:49.128 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-17 22:34:49.138 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 12 ms. 17-03-17 22:34:49.138 -07 000000547 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 40 ms. 17-03-17 22:34:49.138 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 455 455 219 219 37870 150\n [Camera] 17-03-17 22:34:49.318 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 65, FrontChillerTemperature: 4.02213, 17-03-17 22:34:49.338 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-17 22:34:49.798 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 647 17-03-17 22:34:49.798 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 647 17-03-17 22:34:49.798 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 22:34:49.798 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 22:34:49.798 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start. 17-03-17 22:34:49.798 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 647 17-03-17 22:34:49.798 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 647 17-03-17 22:34:49.798 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 22:34:49.798 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 22:34:49.798 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start. 17-03-17 22:34:49.988 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37870 840 17-03-17 22:34:50.138 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning grn on 990 17-03-17 22:34:50.188 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 393 ms. 17-03-17 22:34:50.188 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms. 17-03-17 22:34:50.188 -07 000000462 INF: Camera: CopyActivePixFullImage start. 17-03-17 22:34:50.188 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 391 ms. 17-03-17 22:34:50.188 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms. 17-03-17 22:34:50.198 -07 000000480 INF: Camera: CopyActivePixFullImage start. 17-03-17 22:34:50.198 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms. 17-03-17 22:34:50.198 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms. 17-03-17 22:34:50.198 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 9 ms. 17-03-17 22:34:50.208 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms. 17-03-17 22:34:50.358 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1209 17-03-17 22:34:50.358 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1209 17-03-17 22:34:50.358 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 22:34:50.358 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1209 17-03-17 22:34:50.358 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1209 17-03-17 22:34:50.368 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 22:34:50.368 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 22:34:50.368 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start. 17-03-17 22:34:50.378 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 22:34:50.378 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start. 17-03-17 22:34:50.548 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP 1402 17-03-17 22:34:50.548 -07 000000482 INF: FPGA: Recv CAMDBLSNAP 17-03-17 22:34:50.548 -07 000000610 INF: FPGA: 'CAMDBLSNAP 455 455 219 219 37870 150' command took 2 ms to send, 1398 ms to get response, and 1409 ms overall 17-03-17 22:34:50.558 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880 17-03-17 22:34:50.558 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.91015625, Z-Position -0.172552196723652. ------ 17-03-17 22:34:50.558 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 22:34:50.558 -07 000000486 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.17867 mm 17-03-17 22:34:50.558 -07 000000486 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-17 22:34:50.558 -07 000000480 INF: FPGA: Recv FOCMRRCUR 17-03-17 22:34:50.558 -07 000000482 INF: Z Motor: Entering MoveAbsStepped (DAC = 39031, sync = True, waitForSettling = False) 17-03-17 22:34:50.558 -07 000000482 INF: Z Motor: Moving to -0.178672 mm, started at -0.172552 mm, distance = -6.12 um 17-03-17 22:34:50.558 -07 000000458 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True) 17-03-17 22:34:50.558 -07 000000458 INF: Y Motor: Moving to 60.7426 mm, started at 59.9102 mm, delta = 0.8325 mm 17-03-17 22:34:50.568 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall 17-03-17 22:34:50.568 -07 000000458 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 22:34:50.568 -07 000000576 INF: FPGA: Recv YRDPOS 122696 17-03-17 22:34:50.578 -07 000000458 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 22:34:50.578 -07 000000458 INF: Y Motor: Encoder = 122696 = motor step 95856.3 = 59.9102 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 22:34:50.578 -07 000000382 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror] 17-03-17 22:34:50.578 -07 000000458 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-17 22:34:50.578 -07 000000458 INF: Y Motor: Moving 1332 steps2 17-03-17 22:34:50.588 -07 000000482 INF: FPGA: Xmit ZDACW 39031\n [Z Motor] 17-03-17 22:34:50.588 -07 000000593 INF: FPGA: Recv ZDACW 17-03-17 22:34:50.598 -07 000000458 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-17 22:34:50.598 -07 000000482 INF: FPGA: 'ZDACW 39031' command took 0 ms to send, 0 ms to get response, and 30 ms overall 17-03-17 22:34:50.608 -07 000000482 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 22:34:50.608 -07 000000459 INF: FPGA: Recv ZDACR 39031 17-03-17 22:34:50.618 -07 000000482 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall 17-03-17 22:34:50.618 -07 000000482 INF: Z Motor: MoveAbsStepped took 50 ms (did NOT wait for settling yet)) 17-03-17 22:34:50.758 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 384 ms. 17-03-17 22:34:50.758 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms. 17-03-17 22:34:50.758 -07 000000547 INF: Camera: CopyActivePixFullImage start. 17-03-17 22:34:50.758 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 391 ms. 17-03-17 22:34:50.758 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms. 17-03-17 22:34:50.758 -07 000000627 INF: Camera: CopyActivePixFullImage start. 17-03-17 22:34:50.768 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-17 22:34:50.768 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-17 22:34:50.768 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms. 17-03-17 22:34:50.768 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms. 17-03-17 22:34:50.778 -07 000000623 INF: FPGA: Recv FOCMRRFOC 17-03-17 22:34:50.778 -07 000000382 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 212 ms overall 17-03-17 22:34:50.968 -07 000000480 INF: FPGA: Recv YMVTILE 17-03-17 22:34:50.968 -07 000000458 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall 17-03-17 22:34:51.008 -07 000000458 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 22:34:51.008 -07 000000459 INF: FPGA: Recv YRDPOS 124380 17-03-17 22:34:51.018 -07 000000458 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall 17-03-17 22:34:51.018 -07 000000458 INF: Y Motor: Encoder = 124380 = motor step 97171.9 = 60.7324 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 22:34:51.018 -07 000000458 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm) 17-03-17 22:34:51.018 -07 000000458 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.832 mm, average velocity = 2.097 mm/sec 17-03-17 22:34:51.968 -07 000000458 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 22:34:51.968 -07 000000623 INF: FPGA: Recv YRDPOS 124380 17-03-17 22:34:51.978 -07 000000458 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 22:34:51.978 -07 000000458 INF: Y Motor: Encoder = 124380 = motor step 97171.9 = 60.7324 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 22:34:51.988 -07 000000482 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 22:34:51.988 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 64. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1026, R2=1057, Total=2083. Warn if over 250 bubbles per interval. 17-03-17 22:34:51.998 -07 000000458 INF: Y Motor: After move to 60.742607, error = -0.010185, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm 17-03-17 22:34:51.998 -07 000000458 INF: Y Motor: Position error after settling (table move) = -21 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm) 17-03-17 22:34:51.998 -07 000000458 INF: Y Motor: Moved to 60.7324 after 1437 ms (table move) 17-03-17 22:34:52.008 -07 000000486 INF: Z Motor: EndOfMoveAbsStepped: target = -0.178672 mm (DAC = 39031) 17-03-17 22:34:52.008 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:34:52.008 -07 000000541 INF: FPGA: Recv ZSGSRD 37111 17-03-17 22:34:52.018 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:34:52.018 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:34:52.018 -07 000000482 INF: FPGA: Recv ZSGSRD 37110 17-03-17 22:34:52.028 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:34:52.028 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:34:52.028 -07 000000576 INF: FPGA: Recv ZSGSRD 37102 17-03-17 22:34:52.038 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:34:52.038 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:34:52.038 -07 000000502 INF: FPGA: Recv ZSGSRD 37107 17-03-17 22:34:52.048 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:34:52.048 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:34:52.048 -07 000000593 INF: FPGA: Recv ZSGSRD 37100 17-03-17 22:34:52.058 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:34:52.058 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:34:52.058 -07 000000551 INF: FPGA: Recv ZSGSRD 37110 17-03-17 22:34:52.068 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:34:52.068 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:34:52.068 -07 000000382 INF: FPGA: Recv ZSGSRD 37098 17-03-17 22:34:52.078 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:34:52.078 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:34:52.078 -07 000000462 INF: FPGA: Recv ZSGSRD 37092 17-03-17 22:34:52.088 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:34:52.088 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:34:52.088 -07 000000482 INF: FPGA: Recv ZSGSRD 37101 17-03-17 22:34:52.098 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:34:52.098 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:34:52.098 -07 000000547 INF: FPGA: Recv ZSGSRD 37107 17-03-17 22:34:52.108 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:34:52.108 -07 000000486 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 22:34:52.108 -07 000000382 INF: FPGA: Recv ZPIEZORD 33523 17-03-17 22:34:52.118 -07 000000486 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:34:52.118 -07 000000486 INF: Z Motor: Piezo is near 51.6 V (nominally 0 to 100 V), expect near 59.6 V, since DAC is at 5.956 V. Piezo Error = -7.9 V. 17-03-17 22:34:52.118 -07 000000486 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.7 um, Read 10 ADC samples: Avg = 37104 (-177.8 uncal um), Error = 0.9 uncal um, Median = 37104 (-177.8 uncal um), StdDev = 6 (0.0 uncal um), Range = 19 (0.1 uncal um), Min = 37092 (-177.7 uncal um), Max = 37111 (-177.8 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 12 (0.1 uncal um) 17-03-17 22:34:52.118 -07 000000486 INF: Z Motor: ADC noise = 12, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37104, posNoise = 7, negNoise = 12 17-03-17 22:34:52.118 -07 000000486 INF: Z Motor: After move to -0.178672, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 22:34:52.118 -07 000000486 INF: Z Motor: Settle wait time = 1440 ms, measure time = 112 ms (allowed 150 ms), total time = 1552 ms 17-03-17 22:34:52.118 -07 000000486 INF: Z Motor: Waiting extra 38 ms after reading position to reach expected total of 150 ms 17-03-17 22:34:52.158 -07 000000486 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1595 ms 17-03-17 22:34:52.158 -07 000000486 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-17 22:34:52.158 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 22:34:52.158 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 22:34:52.158 -07 000000593 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 22:34:52.158 -07 000000459 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 22:34:52.158 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger start. 17-03-17 22:34:52.158 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 22:34:52.158 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 22:34:52.158 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start. 17-03-17 22:34:52.158 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms. 17-03-17 22:34:52.158 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start. 17-03-17 22:34:52.178 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms. 17-03-17 22:34:52.178 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms. 17-03-17 22:34:52.178 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera] 17-03-17 22:34:52.218 -07 000000502 INF: FPGA: Recv @CAMSNAP turning led on 40 17-03-17 22:34:52.418 -07 000000608 INF: FPGA: Recv @CAMSNAP img rdy 240 17-03-17 22:34:52.418 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240 17-03-17 22:34:52.418 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start. 17-03-17 22:34:52.428 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1406045800, 0x0, 559484976) start. 17-03-17 22:34:52.458 -07 000000415 INF: FPGA: Recv @CAMSNAP 280 17-03-17 22:34:52.458 -07 000000551 INF: FPGA: Recv CAMSNAP 17-03-17 22:34:52.458 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 285 ms overall 17-03-17 22:34:52.548 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1406045800, 0x0, 559484976) end. Duration was 124 ms. 17-03-17 22:34:52.548 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-17 22:34:52.548 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms. 17-03-17 22:34:52.548 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 127 ms. 17-03-17 22:34:52.658 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 22:34:52.658 -07 000000593 INF: Autofocus start 17-03-17 22:34:52.658 -07 000000593 INF: MeasureProfile start 17-03-17 22:34:52.658 -07 000000502 INF: FPGA: Recv FOCMRRCUR 17-03-17 22:34:52.668 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-17 22:34:52.668 -07 000000462 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror] 17-03-17 22:34:52.668 -07 000000593 INF: MeasureProfile done 17-03-17 22:34:52.668 -07 000000593 INF: X=0 Z correction [um]=-0.0713522 17-03-17 22:34:52.668 -07 000000593 INF: Autofocus finished 17-03-17 22:34:52.868 -07 000000623 INF: FPGA: Recv FOCMRRIMG 17-03-17 22:34:52.868 -07 000000462 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 203 ms overall 17-03-17 22:34:52.868 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.732421875, Z-position -0.178687319319033. ---------- 17-03-17 22:34:52.868 -07 000000610 INF: Cycle 65 Tile 2 Exposure Settings A 455 G 219 T 219 C 455 17-03-17 22:34:52.878 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37528, sync = True, waitForSettling = True) 17-03-17 22:34:52.878 -07 000000610 INF: Z Motor: Moving to -0.171792 mm, started at -0.178687 mm, distance = 6.90 um 17-03-17 22:34:52.878 -07 000000610 INF: FPGA: Xmit ZDACW 37528\n [Z Motor] 17-03-17 22:34:52.878 -07 000000486 INF: FPGA: Recv ZDACW 17-03-17 22:34:52.888 -07 000000610 INF: FPGA: 'ZDACW 37528' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:34:52.888 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 22:34:52.888 -07 000000569 INF: FPGA: Recv ZDACR 37528 17-03-17 22:34:52.898 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:34:52.898 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-17 22:34:53.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:34:53.048 -07 000000480 INF: FPGA: Recv ZSGSRD 36034 17-03-17 22:34:53.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 22:34:53.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:34:53.058 -07 000000623 INF: FPGA: Recv ZSGSRD 36035 17-03-17 22:34:53.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:34:53.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:34:53.068 -07 000000593 INF: FPGA: Recv ZSGSRD 36030 17-03-17 22:34:53.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:34:53.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:34:53.078 -07 000000382 INF: FPGA: Recv ZSGSRD 36027 17-03-17 22:34:53.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 22:34:53.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:34:53.088 -07 000000627 INF: FPGA: Recv ZSGSRD 36033 17-03-17 22:34:53.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:34:53.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:34:53.098 -07 000000415 INF: FPGA: Recv ZSGSRD 36035 17-03-17 22:34:53.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:34:53.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:34:53.108 -07 000000459 INF: FPGA: Recv ZSGSRD 36037 17-03-17 22:34:53.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:34:53.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:34:53.118 -07 000000593 INF: FPGA: Recv ZSGSRD 36032 17-03-17 22:34:53.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:34:53.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:34:53.128 -07 000000502 INF: FPGA: Recv ZSGSRD 36029 17-03-17 22:34:53.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:34:53.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:34:53.138 -07 000000482 INF: FPGA: Recv ZSGSRD 36032 17-03-17 22:34:53.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:34:53.148 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 22:34:53.148 -07 000000576 INF: FPGA: Recv ZPIEZORD 32067 17-03-17 22:34:53.158 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:34:53.158 -07 000000610 INF: Z Motor: Piezo is near 48.5 V (nominally 0 to 100 V), expect near 57.3 V, since DAC is at 5.726 V. Piezo Error = -8.8 V. 17-03-17 22:34:53.158 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.8 um, Read 10 ADC samples: Avg = 36032 (-170.9 uncal um), Error = 0.9 uncal um, Median = 36032 (-170.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 36027 (-170.9 uncal um), Max = 36037 (-171.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um) 17-03-17 22:34:53.158 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36032, posNoise = 5, negNoise = 5 17-03-17 22:34:53.158 -07 000000610 INF: Z Motor: After move to -0.171792, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 22:34:53.158 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms) 17-03-17 22:34:53.158 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 22:34:53.158 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 22:34:53.158 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 22:34:53.158 -07 000000541 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 22:34:53.158 -07 000000482 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-17 22:34:53.158 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 22:34:53.158 -07 000000547 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-17 22:34:53.158 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-17 22:34:53.158 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 22:34:53.158 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-17 22:34:53.158 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms. 17-03-17 22:34:53.158 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-17 22:34:53.158 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms. 17-03-17 22:34:53.158 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-17 22:34:53.168 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms. 17-03-17 22:34:53.168 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-17 22:34:53.178 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms. 17-03-17 22:34:53.178 -07 000000482 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms. 17-03-17 22:34:53.178 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms. 17-03-17 22:34:53.178 -07 000000547 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms. 17-03-17 22:34:53.178 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 455 455 219 219 37705 150\n [Camera] 17-03-17 22:34:53.378 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-17 22:34:53.838 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 647 17-03-17 22:34:53.838 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 647 17-03-17 22:34:53.838 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 22:34:53.838 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 647 17-03-17 22:34:53.838 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 647 17-03-17 22:34:53.838 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 22:34:53.958 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 22:34:53.958 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 1425127184, 0x0, 391868352) start. 17-03-17 22:34:53.958 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 22:34:53.958 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start. 17-03-17 22:34:54.028 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37705 840 17-03-17 22:34:54.178 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP turning grn on 990 17-03-17 22:34:54.338 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 375 ms. 17-03-17 22:34:54.338 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms. 17-03-17 22:34:54.338 -07 000000458 INF: Camera: CopyActivePixFullImage start. 17-03-17 22:34:54.338 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 22:34:54.338 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 1425127184, 0x0, 391868352) end. Duration was 383 ms. 17-03-17 22:34:54.338 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms. 17-03-17 22:34:54.338 -07 000000480 INF: Camera: CopyActivePixFullImage start. 17-03-17 22:34:54.338 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 22:34:54.338 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 503 ms. 17-03-17 22:34:54.348 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 503 ms. 17-03-17 22:34:54.398 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1209 17-03-17 22:34:54.398 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1209 17-03-17 22:34:54.398 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 22:34:54.398 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1209 17-03-17 22:34:54.398 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1209 17-03-17 22:34:54.408 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 22:34:54.408 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 22:34:54.408 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start. 17-03-17 22:34:54.408 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 22:34:54.408 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start. 17-03-17 22:34:54.588 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP 1402 17-03-17 22:34:54.588 -07 000000486 INF: FPGA: Recv CAMDBLSNAP 17-03-17 22:34:54.588 -07 000000610 INF: FPGA: 'CAMDBLSNAP 455 455 219 219 37705 150' command took 2 ms to send, 1397 ms to get response, and 1409 ms overall 17-03-17 22:34:54.598 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880 17-03-17 22:34:54.598 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.732421875, Z-Position -0.171800563903066. ------ 17-03-17 22:34:54.598 -07 000000623 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 22:34:54.598 -07 000000480 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.17809 mm 17-03-17 22:34:54.598 -07 000000480 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-17 22:34:54.598 -07 000000462 INF: FPGA: Recv FOCMRRCUR 17-03-17 22:34:54.598 -07 000000482 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True) 17-03-17 22:34:54.598 -07 000000482 INF: Y Motor: Moving to 61.5726 mm, started at 60.7324 mm, delta = 0.8402 mm 17-03-17 22:34:54.598 -07 000000547 INF: Z Motor: Entering MoveAbsStepped (DAC = 38904, sync = True, waitForSettling = False) 17-03-17 22:34:54.608 -07 000000547 INF: Z Motor: Moving to -0.178091 mm, started at -0.171801 mm, distance = -6.29 um 17-03-17 22:34:54.608 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 22:34:54.608 -07 000000623 INF: FPGA: 'FOCMRRCUR 80' command took 2 ms to send, 0 ms to get response, and 6 ms overall 17-03-17 22:34:54.608 -07 000000415 INF: FPGA: Recv YRDPOS 124380 17-03-17 22:34:54.618 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 22:34:54.618 -07 000000547 INF: FPGA: Xmit ZDACW 38904\n [Z Motor] 17-03-17 22:34:54.618 -07 000000482 INF: Y Motor: Encoder = 124380 = motor step 97171.9 = 60.7324 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 22:34:54.618 -07 000000482 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-17 22:34:54.618 -07 000000482 INF: Y Motor: Moving 1344 steps-21 17-03-17 22:34:54.618 -07 000000593 INF: FPGA: Recv ZDACW 17-03-17 22:34:54.628 -07 000000623 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror] 17-03-17 22:34:54.628 -07 000000547 INF: FPGA: 'ZDACW 38904' command took 0 ms to send, 0 ms to get response, and 19 ms overall 17-03-17 22:34:54.638 -07 000000482 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-17 22:34:54.648 -07 000000547 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 22:34:54.648 -07 000000576 INF: FPGA: Recv ZDACR 38904 17-03-17 22:34:54.658 -07 000000547 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall 17-03-17 22:34:54.658 -07 000000547 INF: Z Motor: MoveAbsStepped took 50 ms (did NOT wait for settling yet)) 17-03-17 22:34:54.678 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 65, FrontChillerTemperature: 3.993549, 17-03-17 22:34:54.808 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 394 ms. 17-03-17 22:34:54.808 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms. 17-03-17 22:34:54.808 -07 000000502 INF: Camera: CopyActivePixFullImage start. 17-03-17 22:34:54.808 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 397 ms. 17-03-17 22:34:54.808 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms. 17-03-17 22:34:54.808 -07 000000627 INF: Camera: CopyActivePixFullImage start. 17-03-17 22:34:54.808 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-17 22:34:54.808 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-17 22:34:54.808 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms. 17-03-17 22:34:54.818 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms. 17-03-17 22:34:54.828 -07 000000462 INF: FPGA: Recv FOCMRRFOC 17-03-17 22:34:54.828 -07 000000623 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall 17-03-17 22:34:55.008 -07 000000551 INF: FPGA: Recv YMVTILE 17-03-17 22:34:55.008 -07 000000482 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall 17-03-17 22:34:55.048 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 22:34:55.058 -07 000000382 INF: FPGA: Recv YRDPOS 126081 17-03-17 22:34:55.058 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall 17-03-17 22:34:55.058 -07 000000482 INF: Y Motor: Encoder = 126081 = motor step 98500.8 = 61.5630 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 22:34:55.058 -07 000000482 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm) 17-03-17 22:34:55.058 -07 000000482 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.840 mm, average velocity = 2.116 mm/sec 17-03-17 22:34:56.008 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 22:34:56.008 -07 000000502 INF: FPGA: Recv YRDPOS 126082 17-03-17 22:34:56.018 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 22:34:56.018 -07 000000482 INF: Y Motor: Encoder = 126082 = motor step 98501.6 = 61.5635 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 22:34:56.038 -07 000000482 INF: Y Motor: After move to 61.572609, error = -0.009132, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm 17-03-17 22:34:56.038 -07 000000482 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 1 counts (0.000 mm) 17-03-17 22:34:56.038 -07 000000482 INF: Y Motor: Moved to 61.5635 after 1437 ms (table move) 17-03-17 22:34:56.048 -07 000000480 INF: Z Motor: EndOfMoveAbsStepped: target = -0.178091 mm (DAC = 38904) 17-03-17 22:34:56.048 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:34:56.048 -07 000000486 INF: FPGA: Recv ZSGSRD 37011 17-03-17 22:34:56.058 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:34:56.058 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:34:56.058 -07 000000502 INF: FPGA: Recv ZSGSRD 37015 17-03-17 22:34:56.068 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:34:56.068 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:34:56.068 -07 000000551 INF: FPGA: Recv ZSGSRD 37000 17-03-17 22:34:56.078 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:34:56.078 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:34:56.078 -07 000000547 INF: FPGA: Recv ZSGSRD 37022 17-03-17 22:34:56.088 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:34:56.088 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:34:56.088 -07 000000593 INF: FPGA: Recv ZSGSRD 37005 17-03-17 22:34:56.098 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:34:56.098 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:34:56.098 -07 000000459 INF: FPGA: Recv ZSGSRD 37018 17-03-17 22:34:56.108 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:34:56.108 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:34:56.108 -07 000000608 INF: FPGA: Recv ZSGSRD 37016 17-03-17 22:34:56.118 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 22:34:56.118 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:34:56.118 -07 000000462 INF: FPGA: Recv ZSGSRD 37011 17-03-17 22:34:56.128 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:34:56.128 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:34:56.128 -07 000000502 INF: FPGA: Recv ZSGSRD 37012 17-03-17 22:34:56.138 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:34:56.138 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:34:56.138 -07 000000576 INF: FPGA: Recv ZSGSRD 37010 17-03-17 22:34:56.148 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:34:56.148 -07 000000480 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 22:34:56.148 -07 000000382 INF: FPGA: Recv ZPIEZORD 33450 17-03-17 22:34:56.158 -07 000000480 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:34:56.158 -07 000000480 INF: Z Motor: Piezo is near 51.5 V (nominally 0 to 100 V), expect near 59.4 V, since DAC is at 5.936 V. Piezo Error = -7.9 V. 17-03-17 22:34:56.158 -07 000000480 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.1 um, Read 10 ADC samples: Avg = 37012 (-177.2 uncal um), Error = 0.9 uncal um, Median = 37012 (-177.2 uncal um), StdDev = 6 (0.0 uncal um), Range = 22 (0.1 uncal um), Min = 37000 (-177.1 uncal um), Max = 37022 (-177.3 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 12 (0.1 uncal um) 17-03-17 22:34:56.158 -07 000000480 INF: Z Motor: ADC noise = 12, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37012, posNoise = 10, negNoise = 12 17-03-17 22:34:56.158 -07 000000480 INF: Z Motor: After move to -0.178091, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 22:34:56.158 -07 000000480 INF: Z Motor: Settle wait time = 1440 ms, measure time = 110 ms (allowed 150 ms), total time = 1550 ms 17-03-17 22:34:56.158 -07 000000480 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms 17-03-17 22:34:56.198 -07 000000480 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1596 ms 17-03-17 22:34:56.198 -07 000000480 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-17 22:34:56.198 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 22:34:56.198 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 22:34:56.198 -07 000000623 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 22:34:56.198 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger start. 17-03-17 22:34:56.198 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 22:34:56.208 -07 000000486 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 22:34:56.208 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms. 17-03-17 22:34:56.208 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start. 17-03-17 22:34:56.208 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms. 17-03-17 22:34:56.208 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start. 17-03-17 22:34:56.218 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms. 17-03-17 22:34:56.218 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms. 17-03-17 22:34:56.218 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera] 17-03-17 22:34:56.258 -07 000000382 INF: FPGA: Recv @CAMSNAP turning led on 40 17-03-17 22:34:56.458 -07 000000623 INF: FPGA: Recv @CAMSNAP img rdy 240 17-03-17 22:34:56.458 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240 17-03-17 22:34:56.458 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start. 17-03-17 22:34:56.458 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1165594328, 0x0, 559484976) start. 17-03-17 22:34:56.498 -07 000000482 INF: FPGA: Recv @CAMSNAP 280 17-03-17 22:34:56.498 -07 000000593 INF: FPGA: Recv CAMSNAP 17-03-17 22:34:56.498 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 284 ms overall 17-03-17 22:34:56.578 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1165594328, 0x0, 559484976) end. Duration was 114 ms. 17-03-17 22:34:56.578 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-17 22:34:56.578 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms. 17-03-17 22:34:56.578 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms. 17-03-17 22:34:56.598 -07 000000551 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 22:34:56.598 -07 000000502 INF: Autofocus start 17-03-17 22:34:56.598 -07 000000502 INF: MeasureProfile start 17-03-17 22:34:56.598 -07 000000608 INF: FPGA: Recv FOCMRRCUR 17-03-17 22:34:56.608 -07 000000551 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-17 22:34:56.608 -07 000000551 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror] 17-03-17 22:34:56.608 -07 000000502 INF: MeasureProfile done 17-03-17 22:34:56.608 -07 000000502 INF: X=64 Z correction [um]=0.2557664 17-03-17 22:34:56.608 -07 000000502 INF: Autofocus finished 17-03-17 22:34:56.808 -07 000000608 INF: FPGA: Recv FOCMRRIMG 17-03-17 22:34:56.808 -07 000000551 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall 17-03-17 22:34:56.808 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.5634765625, Z-position -0.178096291801991. ---------- 17-03-17 22:34:56.818 -07 000000610 INF: Cycle 65 Tile 3 Exposure Settings A 455 G 219 T 219 C 455 17-03-17 22:34:56.818 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37473, sync = True, waitForSettling = True) 17-03-17 22:34:56.818 -07 000000610 INF: Z Motor: Moving to -0.171540 mm, started at -0.178096 mm, distance = 6.56 um 17-03-17 22:34:56.818 -07 000000610 INF: FPGA: Xmit ZDACW 37473\n [Z Motor] 17-03-17 22:34:56.818 -07 000000569 INF: FPGA: Recv ZDACW 17-03-17 22:34:56.828 -07 000000610 INF: FPGA: 'ZDACW 37473' command took 0 ms to send, 0 ms to get response, and 7 ms overall 17-03-17 22:34:56.828 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 22:34:56.828 -07 000000486 INF: FPGA: Recv ZDACR 37473 17-03-17 22:34:56.838 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:34:56.838 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-17 22:34:56.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:34:56.988 -07 000000459 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 22:34:56.988 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 64. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1026, R2=1057, Total=2083. Warn if over 250 bubbles per interval. 17-03-17 22:34:56.988 -07 000000462 INF: FPGA: Recv ZSGSRD 35991 17-03-17 22:34:56.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:34:56.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:34:56.998 -07 000000623 INF: FPGA: Recv ZSGSRD 35987 17-03-17 22:34:57.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:34:57.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:34:57.008 -07 000000415 INF: FPGA: Recv ZSGSRD 35994 17-03-17 22:34:57.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:34:57.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:34:57.018 -07 000000608 INF: FPGA: Recv ZSGSRD 35991 17-03-17 22:34:57.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:34:57.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:34:57.028 -07 000000382 INF: FPGA: Recv ZSGSRD 35999 17-03-17 22:34:57.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:34:57.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:34:57.038 -07 000000480 INF: FPGA: Recv ZSGSRD 35990 17-03-17 22:34:57.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:34:57.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:34:57.048 -07 000000502 INF: FPGA: Recv ZSGSRD 35991 17-03-17 22:34:57.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:34:57.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:34:57.058 -07 000000541 INF: FPGA: Recv ZSGSRD 35994 17-03-17 22:34:57.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:34:57.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:34:57.068 -07 000000627 INF: FPGA: Recv ZSGSRD 35991 17-03-17 22:34:57.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:34:57.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:34:57.078 -07 000000382 INF: FPGA: Recv ZSGSRD 35991 17-03-17 22:34:57.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:34:57.088 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 22:34:57.088 -07 000000576 INF: FPGA: Recv ZPIEZORD 32050 17-03-17 22:34:57.098 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:34:57.098 -07 000000610 INF: Z Motor: Piezo is near 48.5 V (nominally 0 to 100 V), expect near 57.2 V, since DAC is at 5.718 V. Piezo Error = -8.7 V. 17-03-17 22:34:57.098 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.5 um, Read 10 ADC samples: Avg = 35992 (-170.7 uncal um), Error = 0.9 uncal um, Median = 35991 (-170.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35987 (-170.6 uncal um), Max = 35999 (-170.7 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um) 17-03-17 22:34:57.098 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35992, posNoise = 7, negNoise = 5 17-03-17 22:34:57.098 -07 000000610 INF: Z Motor: After move to -0.171540, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 22:34:57.098 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms) 17-03-17 22:34:57.098 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 22:34:57.098 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 22:34:57.098 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-17 22:34:57.098 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 22:34:57.098 -07 000000415 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 22:34:57.098 -07 000000551 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-17 22:34:57.098 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-17 22:34:57.098 -07 000000486 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 22:34:57.098 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 22:34:57.098 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-17 22:34:57.098 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms. 17-03-17 22:34:57.098 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-17 22:34:57.098 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms. 17-03-17 22:34:57.108 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-17 22:34:57.108 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms. 17-03-17 22:34:57.108 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-17 22:34:57.118 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms. 17-03-17 22:34:57.118 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms. 17-03-17 22:34:57.118 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms. 17-03-17 22:34:57.118 -07 000000551 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms. 17-03-17 22:34:57.118 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 455 455 219 219 37649 150\n [Camera] 17-03-17 22:34:57.318 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-17 22:34:57.778 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 647 17-03-17 22:34:57.778 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 647 17-03-17 22:34:57.778 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 22:34:57.778 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 22:34:57.778 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start. 17-03-17 22:34:57.778 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 647 17-03-17 22:34:57.778 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 647 17-03-17 22:34:57.778 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 22:34:57.778 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 22:34:57.778 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start. 17-03-17 22:34:57.968 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37649 841 17-03-17 22:34:58.118 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP turning grn on 990 17-03-17 22:34:58.168 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 392 ms. 17-03-17 22:34:58.168 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms. 17-03-17 22:34:58.168 -07 000000608 INF: Camera: CopyActivePixFullImage start. 17-03-17 22:34:58.168 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 392 ms. 17-03-17 22:34:58.168 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms. 17-03-17 22:34:58.168 -07 000000482 INF: Camera: CopyActivePixFullImage start. 17-03-17 22:34:58.178 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 22:34:58.178 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms. 17-03-17 22:34:58.178 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 22:34:58.188 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 403 ms. 17-03-17 22:34:58.338 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1209 17-03-17 22:34:58.338 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1209 17-03-17 22:34:58.338 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 22:34:58.448 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1209 17-03-17 22:34:58.448 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1209 17-03-17 22:34:58.448 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 22:34:58.448 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 22:34:58.448 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start. 17-03-17 22:34:58.458 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 22:34:58.458 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) start. 17-03-17 22:34:58.528 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP 1402 17-03-17 22:34:58.528 -07 000000459 INF: FPGA: Recv CAMDBLSNAP 17-03-17 22:34:58.528 -07 000000610 INF: FPGA: 'CAMDBLSNAP 455 455 219 219 37649 150' command took 2 ms to send, 1397 ms to get response, and 1409 ms overall 17-03-17 22:34:58.528 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880 17-03-17 22:34:58.528 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.5634765625, Z-Position -0.171543595417395. ------ 17-03-17 22:34:58.538 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 22:34:58.538 -07 000000502 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.17788 mm 17-03-17 22:34:58.538 -07 000000502 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-17 22:34:58.538 -07 000000551 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True) 17-03-17 22:34:58.538 -07 000000551 INF: Y Motor: Moving to 62.4026 mm, started at 61.5635 mm, delta = 0.8391 mm 17-03-17 22:34:58.538 -07 000000415 INF: FPGA: Recv FOCMRRCUR 17-03-17 22:34:58.538 -07 000000593 INF: Z Motor: Entering MoveAbsStepped (DAC = 38859, sync = True, waitForSettling = False) 17-03-17 22:34:58.538 -07 000000593 INF: Z Motor: Moving to -0.177885 mm, started at -0.171544 mm, distance = -6.34 um 17-03-17 22:34:58.548 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-17 22:34:58.548 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 22:34:58.548 -07 000000382 INF: FPGA: Recv YRDPOS 126082 17-03-17 22:34:58.558 -07 000000593 INF: FPGA: Xmit ZDACW 38859\n [Z Motor] 17-03-17 22:34:58.558 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall 17-03-17 22:34:58.558 -07 000000551 INF: Y Motor: Encoder = 126082 = motor step 98501.6 = 61.5635 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 22:34:58.558 -07 000000551 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-17 22:34:58.558 -07 000000551 INF: Y Motor: Moving 1343 steps-20 17-03-17 22:34:58.558 -07 000000627 INF: FPGA: Recv ZDACW 17-03-17 22:34:58.568 -07 000000593 INF: FPGA: 'ZDACW 38859' command took 0 ms to send, 0 ms to get response, and 23 ms overall 17-03-17 22:34:58.568 -07 000000480 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror] 17-03-17 22:34:58.578 -07 000000551 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-17 22:34:58.588 -07 000000593 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 22:34:58.588 -07 000000382 INF: FPGA: Recv ZDACR 38859 17-03-17 22:34:58.598 -07 000000593 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall 17-03-17 22:34:58.598 -07 000000593 INF: Z Motor: MoveAbsStepped took 53 ms (did NOT wait for settling yet)) 17-03-17 22:34:58.768 -07 000000459 INF: FPGA: Recv FOCMRRFOC 17-03-17 22:34:58.768 -07 000000480 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 224 ms overall 17-03-17 22:34:58.858 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) end. Duration was 399 ms. 17-03-17 22:34:58.858 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms. 17-03-17 22:34:58.858 -07 000000547 INF: Camera: CopyActivePixFullImage start. 17-03-17 22:34:58.858 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 404 ms. 17-03-17 22:34:58.858 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 404 ms. 17-03-17 22:34:58.858 -07 000000486 INF: Camera: CopyActivePixFullImage start. 17-03-17 22:34:58.858 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-17 22:34:58.858 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-17 22:34:58.858 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 521 ms. 17-03-17 22:34:58.868 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms. 17-03-17 22:34:58.948 -07 000000593 INF: FPGA: Recv YMVTILE 17-03-17 22:34:58.948 -07 000000551 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall 17-03-17 22:34:58.988 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 22:34:58.998 -07 000000382 INF: FPGA: Recv YRDPOS 127785 17-03-17 22:34:58.998 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall 17-03-17 22:34:58.998 -07 000000551 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 22:34:58.998 -07 000000551 INF: Y Motor: Position error before settling (table move) = -16 encoder counts (-0.008 mm) 17-03-17 22:34:58.998 -07 000000551 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.839 mm, average velocity = 2.124 mm/sec 17-03-17 22:34:59.948 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 22:34:59.948 -07 000000541 INF: FPGA: Recv YRDPOS 127785 17-03-17 22:34:59.958 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 22:34:59.958 -07 000000551 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 22:34:59.978 -07 000000551 INF: Y Motor: After move to 62.402607, error = -0.007587, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm 17-03-17 22:34:59.978 -07 000000551 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm) 17-03-17 22:34:59.978 -07 000000551 INF: Y Motor: Moved to 62.3950 after 1438 ms (table move) 17-03-17 22:34:59.978 -07 000000502 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177885 mm (DAC = 38859) 17-03-17 22:34:59.978 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:34:59.988 -07 000000482 INF: FPGA: Recv ZSGSRD 36989 17-03-17 22:34:59.988 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall 17-03-17 22:34:59.988 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:34:59.988 -07 000000541 INF: FPGA: Recv ZSGSRD 36981 17-03-17 22:34:59.998 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall 17-03-17 22:34:59.998 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:34:59.998 -07 000000623 INF: FPGA: Recv ZSGSRD 36980 17-03-17 22:35:00.008 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:00.008 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:00.008 -07 000000608 INF: FPGA: Recv ZSGSRD 36985 17-03-17 22:35:00.018 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:00.018 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:00.018 -07 000000551 INF: FPGA: Recv ZSGSRD 36983 17-03-17 22:35:00.028 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:00.028 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:00.028 -07 000000547 INF: FPGA: Recv ZSGSRD 36982 17-03-17 22:35:00.038 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:00.048 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:00.048 -07 000000547 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 65, FrontChillerTemperature: 3.979922, 17-03-17 22:35:00.048 -07 000000593 INF: FPGA: Recv ZSGSRD 36978 17-03-17 22:35:00.058 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall 17-03-17 22:35:00.078 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:00.078 -07 000000593 INF: FPGA: Recv ZSGSRD 36986 17-03-17 22:35:00.088 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall 17-03-17 22:35:00.098 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:00.098 -07 000000462 INF: FPGA: Recv ZSGSRD 36985 17-03-17 22:35:00.108 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall 17-03-17 22:35:00.108 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:00.108 -07 000000480 INF: FPGA: Recv ZSGSRD 36978 17-03-17 22:35:00.118 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:00.138 -07 000000502 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 22:35:00.138 -07 000000458 INF: FPGA: Recv ZPIEZORD 33407 17-03-17 22:35:00.148 -07 000000502 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 29 ms overall 17-03-17 22:35:00.148 -07 000000502 INF: Z Motor: Piezo is near 51.4 V (nominally 0 to 100 V), expect near 59.3 V, since DAC is at 5.930 V. Piezo Error = -7.9 V. 17-03-17 22:35:00.148 -07 000000502 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.9 um, Read 10 ADC samples: Avg = 36983 (-177.0 uncal um), Error = 0.9 uncal um, Median = 36982 (-177.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36978 (-177.0 uncal um), Max = 36989 (-177.1 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um) 17-03-17 22:35:00.148 -07 000000502 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36983, posNoise = 6, negNoise = 5 17-03-17 22:35:00.148 -07 000000502 INF: Z Motor: After move to -0.177885, error = -0.000025, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 22:35:00.148 -07 000000502 INF: Z Motor: Settle wait time = 1441 ms, measure time = 162 ms (allowed 150 ms), total time = 1603 ms 17-03-17 22:35:00.148 -07 000000502 INF: Z Motor: Warning: Actual position measuring time = 162 ms, longer than max expected time of 150 ms 17-03-17 22:35:00.148 -07 000000502 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1607 ms 17-03-17 22:35:00.148 -07 000000502 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-17 22:35:00.148 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 22:35:00.148 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 22:35:00.148 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 22:35:00.148 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 22:35:00.148 -07 000000541 INF: Disarm and arm camera sensor 0: ROITrigger start. 17-03-17 22:35:00.148 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 22:35:00.158 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms. 17-03-17 22:35:00.158 -07 000000541 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start. 17-03-17 22:35:00.158 -07 000000541 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms. 17-03-17 22:35:00.158 -07 000000541 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start. 17-03-17 22:35:00.168 -07 000000541 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms. 17-03-17 22:35:00.168 -07 000000541 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms. 17-03-17 22:35:00.168 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera] 17-03-17 22:35:00.208 -07 000000541 INF: FPGA: Recv @CAMSNAP turning led on 40 17-03-17 22:35:00.408 -07 000000415 INF: FPGA: Recv @CAMSNAP img rdy 240 17-03-17 22:35:00.408 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240 17-03-17 22:35:00.408 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start. 17-03-17 22:35:00.418 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1406045800, 0x0, 559484976) start. 17-03-17 22:35:00.448 -07 000000480 INF: FPGA: Recv @CAMSNAP 280 17-03-17 22:35:00.448 -07 000000547 INF: FPGA: Recv CAMSNAP 17-03-17 22:35:00.448 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 285 ms overall 17-03-17 22:35:00.528 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1406045800, 0x0, 559484976) end. Duration was 114 ms. 17-03-17 22:35:00.528 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-17 22:35:00.528 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms. 17-03-17 22:35:00.528 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms. 17-03-17 22:35:00.548 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 22:35:00.548 -07 000000623 INF: Autofocus start 17-03-17 22:35:00.548 -07 000000623 INF: MeasureProfile start 17-03-17 22:35:00.558 -07 000000462 INF: FPGA: Recv FOCMRRCUR 17-03-17 22:35:00.558 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall 17-03-17 22:35:00.558 -07 000000576 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror] 17-03-17 22:35:00.568 -07 000000623 INF: MeasureProfile done 17-03-17 22:35:00.568 -07 000000623 INF: X=16 Z correction [um]=0.01042744 17-03-17 22:35:00.568 -07 000000623 INF: Autofocus finished 17-03-17 22:35:00.758 -07 000000551 INF: FPGA: Recv FOCMRRIMG 17-03-17 22:35:00.758 -07 000000576 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 202 ms overall 17-03-17 22:35:00.758 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.39501953125, Z-position -0.17790998964988. ---------- 17-03-17 22:35:00.768 -07 000000610 INF: Cycle 65 Tile 4 Exposure Settings A 455 G 219 T 219 C 455 17-03-17 22:35:00.768 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37373, sync = True, waitForSettling = True) 17-03-17 22:35:00.768 -07 000000610 INF: Z Motor: Moving to -0.171083 mm, started at -0.177910 mm, distance = 6.83 um 17-03-17 22:35:00.768 -07 000000610 INF: FPGA: Xmit ZDACW 37373\n [Z Motor] 17-03-17 22:35:00.768 -07 000000382 INF: FPGA: Recv ZDACW 17-03-17 22:35:00.778 -07 000000610 INF: FPGA: 'ZDACW 37373' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-17 22:35:00.778 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 22:35:00.778 -07 000000623 INF: FPGA: Recv ZDACR 37373 17-03-17 22:35:00.788 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:00.788 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-17 22:35:00.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:00.938 -07 000000551 INF: FPGA: Recv ZSGSRD 35920 17-03-17 22:35:00.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 22:35:00.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:00.948 -07 000000480 INF: FPGA: Recv ZSGSRD 35926 17-03-17 22:35:00.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:00.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:00.958 -07 000000459 INF: FPGA: Recv ZSGSRD 35924 17-03-17 22:35:00.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:00.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:00.968 -07 000000415 INF: FPGA: Recv ZSGSRD 35920 17-03-17 22:35:00.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:00.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:00.978 -07 000000623 INF: FPGA: Recv ZSGSRD 35925 17-03-17 22:35:00.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:00.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:00.988 -07 000000593 INF: FPGA: Recv ZSGSRD 35926 17-03-17 22:35:00.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 22:35:00.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:00.998 -07 000000627 INF: FPGA: Recv ZSGSRD 35928 17-03-17 22:35:01.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:01.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:01.008 -07 000000459 INF: FPGA: Recv ZSGSRD 35919 17-03-17 22:35:01.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:01.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:01.018 -07 000000415 INF: FPGA: Recv ZSGSRD 35919 17-03-17 22:35:01.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:01.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:01.028 -07 000000382 INF: FPGA: Recv ZSGSRD 35931 17-03-17 22:35:01.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:01.038 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 22:35:01.038 -07 000000458 INF: FPGA: Recv ZPIEZORD 31999 17-03-17 22:35:01.048 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:01.048 -07 000000610 INF: Z Motor: Piezo is near 48.4 V (nominally 0 to 100 V), expect near 57.0 V, since DAC is at 5.703 V. Piezo Error = -8.7 V. 17-03-17 22:35:01.048 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.1 um, Read 10 ADC samples: Avg = 35924 (-170.2 uncal um), Error = 0.9 uncal um, Median = 35924 (-170.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35919 (-170.2 uncal um), Max = 35931 (-170.3 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um) 17-03-17 22:35:01.048 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35924, posNoise = 7, negNoise = 5 17-03-17 22:35:01.048 -07 000000610 INF: Z Motor: After move to -0.171083, error = -0.000024, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 22:35:01.048 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms) 17-03-17 22:35:01.048 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 22:35:01.048 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 22:35:01.048 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 22:35:01.048 -07 000000459 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 22:35:01.048 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-17 22:35:01.048 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-17 22:35:01.048 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-17 22:35:01.048 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 22:35:01.048 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms. 17-03-17 22:35:01.048 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-17 22:35:01.048 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 22:35:01.048 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-17 22:35:01.058 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms. 17-03-17 22:35:01.058 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-17 22:35:01.058 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms. 17-03-17 22:35:01.058 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-17 22:35:01.068 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms. 17-03-17 22:35:01.068 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 18 ms. 17-03-17 22:35:01.068 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms. 17-03-17 22:35:01.068 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms. 17-03-17 22:35:01.068 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 455 455 219 219 37550 150\n [Camera] 17-03-17 22:35:01.268 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-17 22:35:01.728 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 647 17-03-17 22:35:01.728 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 647 17-03-17 22:35:01.728 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 22:35:01.728 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 647 17-03-17 22:35:01.728 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 647 17-03-17 22:35:01.728 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 22:35:01.728 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 22:35:01.728 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 1425127184, 0x0, 391868352) start. 17-03-17 22:35:01.738 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 22:35:01.738 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start. 17-03-17 22:35:01.918 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37550 840 17-03-17 22:35:01.988 -07 000000623 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 22:35:01.988 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 64. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1026, R2=1057, Total=2083. Warn if over 250 bubbles per interval. 17-03-17 22:35:02.068 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning grn on 992 17-03-17 22:35:02.128 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 1425127184, 0x0, 391868352) end. Duration was 393 ms. 17-03-17 22:35:02.128 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms. 17-03-17 22:35:02.128 -07 000000459 INF: Camera: CopyActivePixFullImage start. 17-03-17 22:35:02.128 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 393 ms. 17-03-17 22:35:02.128 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms. 17-03-17 22:35:02.128 -07 000000458 INF: Camera: CopyActivePixFullImage start. 17-03-17 22:35:02.128 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms. 17-03-17 22:35:02.128 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms. 17-03-17 22:35:02.138 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms. 17-03-17 22:35:02.138 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms. 17-03-17 22:35:02.288 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1212 17-03-17 22:35:02.288 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1212 17-03-17 22:35:02.298 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 22:35:02.298 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1212 17-03-17 22:35:02.298 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1212 17-03-17 22:35:02.298 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 22:35:02.408 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 22:35:02.408 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start. 17-03-17 22:35:02.408 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 22:35:02.408 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start. 17-03-17 22:35:02.478 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP 1401 17-03-17 22:35:02.478 -07 000000623 INF: FPGA: Recv CAMDBLSNAP 17-03-17 22:35:02.478 -07 000000610 INF: FPGA: 'CAMDBLSNAP 455 455 219 219 37550 150' command took 2 ms to send, 1397 ms to get response, and 1408 ms overall 17-03-17 22:35:02.488 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880 17-03-17 22:35:02.488 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.39501953125, Z-Position -0.171106748991756. ------ 17-03-17 22:35:02.488 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 22:35:02.488 -07 000000547 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.17768 mm 17-03-17 22:35:02.488 -07 000000547 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-17 22:35:02.488 -07 000000480 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True) 17-03-17 22:35:02.488 -07 000000480 INF: Y Motor: Moving to 63.2326 mm, started at 62.3950 mm, delta = 0.8376 mm 17-03-17 22:35:02.488 -07 000000569 INF: Z Motor: Entering MoveAbsStepped (DAC = 38814, sync = True, waitForSettling = False) 17-03-17 22:35:02.488 -07 000000569 INF: Z Motor: Moving to -0.177679 mm, started at -0.171107 mm, distance = -6.57 um 17-03-17 22:35:02.488 -07 000000627 INF: FPGA: Recv FOCMRRCUR 17-03-17 22:35:02.498 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-17 22:35:02.498 -07 000000569 INF: FPGA: Xmit ZDACW 38814\n [Z Motor] 17-03-17 22:35:02.498 -07 000000415 INF: FPGA: Recv ZDACW 17-03-17 22:35:02.508 -07 000000569 INF: FPGA: 'ZDACW 38814' command took 0 ms to send, 0 ms to get response, and 14 ms overall 17-03-17 22:35:02.508 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 22:35:02.508 -07 000000623 INF: FPGA: Recv YRDPOS 127785 17-03-17 22:35:02.518 -07 000000576 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror] 17-03-17 22:35:02.518 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 24 ms overall 17-03-17 22:35:02.518 -07 000000480 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 22:35:02.518 -07 000000480 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-17 22:35:02.518 -07 000000480 INF: Y Motor: Moving 1340 steps-16 17-03-17 22:35:02.528 -07 000000569 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 22:35:02.528 -07 000000482 INF: FPGA: Recv ZDACR 38814 17-03-17 22:35:02.538 -07 000000480 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-17 22:35:02.538 -07 000000569 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 30 ms overall 17-03-17 22:35:02.538 -07 000000569 INF: Z Motor: MoveAbsStepped took 44 ms (did NOT wait for settling yet)) 17-03-17 22:35:02.718 -07 000000482 INF: FPGA: Recv FOCMRRFOC 17-03-17 22:35:02.718 -07 000000576 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall 17-03-17 22:35:02.788 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 380 ms. 17-03-17 22:35:02.788 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms. 17-03-17 22:35:02.788 -07 000000382 INF: Camera: CopyActivePixFullImage start. 17-03-17 22:35:02.798 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 22:35:02.798 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 389 ms. 17-03-17 22:35:02.798 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 390 ms. 17-03-17 22:35:02.798 -07 000000458 INF: Camera: CopyActivePixFullImage start. 17-03-17 22:35:02.798 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 22:35:02.798 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 509 ms. 17-03-17 22:35:02.798 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 505 ms. 17-03-17 22:35:02.908 -07 000000459 INF: FPGA: Recv YMVTILE 17-03-17 22:35:02.908 -07 000000480 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 390 ms overall 17-03-17 22:35:02.948 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 22:35:02.958 -07 000000623 INF: FPGA: Recv YRDPOS 129481 17-03-17 22:35:02.958 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall 17-03-17 22:35:02.958 -07 000000480 INF: Y Motor: Encoder = 129481 = motor step 101157.0 = 63.2231 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 22:35:02.958 -07 000000480 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm) 17-03-17 22:35:02.958 -07 000000480 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 392 ms, distance = 0.838 mm, average velocity = 2.137 mm/sec 17-03-17 22:35:03.908 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 22:35:03.908 -07 000000462 INF: FPGA: Recv YRDPOS 129482 17-03-17 22:35:03.918 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:03.918 -07 000000480 INF: Y Motor: Encoder = 129482 = motor step 101157.8 = 63.2236 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 22:35:03.938 -07 000000480 INF: Y Motor: After move to 63.232609, error = -0.008976, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm 17-03-17 22:35:03.938 -07 000000480 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 1 counts (0.000 mm) 17-03-17 22:35:03.938 -07 000000480 INF: Y Motor: Moved to 63.2236 after 1449 ms (table move) 17-03-17 22:35:03.938 -07 000000547 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177679 mm (DAC = 38814) 17-03-17 22:35:03.938 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:03.948 -07 000000541 INF: FPGA: Recv ZSGSRD 36953 17-03-17 22:35:03.948 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall 17-03-17 22:35:03.948 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:03.948 -07 000000623 INF: FPGA: Recv ZSGSRD 36945 17-03-17 22:35:03.958 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall 17-03-17 22:35:03.958 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:03.958 -07 000000486 INF: FPGA: Recv ZSGSRD 36942 17-03-17 22:35:03.968 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:03.968 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:03.968 -07 000000608 INF: FPGA: Recv ZSGSRD 36948 17-03-17 22:35:03.978 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:03.978 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:03.978 -07 000000382 INF: FPGA: Recv ZSGSRD 36954 17-03-17 22:35:03.988 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:03.988 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:03.988 -07 000000623 INF: FPGA: Recv ZSGSRD 36952 17-03-17 22:35:03.998 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:03.998 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:03.998 -07 000000502 INF: FPGA: Recv ZSGSRD 36948 17-03-17 22:35:04.008 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall 17-03-17 22:35:04.008 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:04.008 -07 000000627 INF: FPGA: Recv ZSGSRD 36946 17-03-17 22:35:04.018 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:04.018 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:04.018 -07 000000482 INF: FPGA: Recv ZSGSRD 36944 17-03-17 22:35:04.028 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:04.028 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:04.028 -07 000000569 INF: FPGA: Recv ZSGSRD 36943 17-03-17 22:35:04.038 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:04.038 -07 000000547 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 22:35:04.038 -07 000000502 INF: FPGA: Recv ZPIEZORD 33330 17-03-17 22:35:04.048 -07 000000547 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:04.048 -07 000000547 INF: Z Motor: Piezo is near 51.2 V (nominally 0 to 100 V), expect near 59.2 V, since DAC is at 5.923 V. Piezo Error = -8.0 V. 17-03-17 22:35:04.048 -07 000000547 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.7 um, Read 10 ADC samples: Avg = 36948 (-176.8 uncal um), Error = 0.9 uncal um, Median = 36947 (-176.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36942 (-176.8 uncal um), Max = 36954 (-176.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um) 17-03-17 22:35:04.048 -07 000000547 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36948, posNoise = 6, negNoise = 6 17-03-17 22:35:04.048 -07 000000547 INF: Z Motor: After move to -0.177679, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 22:35:04.048 -07 000000547 INF: Z Motor: Settle wait time = 1452 ms, measure time = 102 ms (allowed 150 ms), total time = 1554 ms 17-03-17 22:35:04.048 -07 000000547 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms 17-03-17 22:35:04.098 -07 000000547 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1606 ms 17-03-17 22:35:04.098 -07 000000547 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-17 22:35:04.098 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 22:35:04.098 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 22:35:04.098 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 22:35:04.098 -07 000000415 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 22:35:04.098 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger start. 17-03-17 22:35:04.098 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 22:35:04.108 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms. 17-03-17 22:35:04.108 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start. 17-03-17 22:35:04.108 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms. 17-03-17 22:35:04.108 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start. 17-03-17 22:35:04.118 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms. 17-03-17 22:35:04.118 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms. 17-03-17 22:35:04.118 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera] 17-03-17 22:35:04.158 -07 000000462 INF: FPGA: Recv @CAMSNAP turning led on 40 17-03-17 22:35:04.358 -07 000000541 INF: FPGA: Recv @CAMSNAP img rdy 240 17-03-17 22:35:04.358 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240 17-03-17 22:35:04.358 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start. 17-03-17 22:35:04.368 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1406045800, 0x0, 559484976) start. 17-03-17 22:35:04.398 -07 000000623 INF: FPGA: Recv @CAMSNAP 280 17-03-17 22:35:04.398 -07 000000547 INF: FPGA: Recv CAMSNAP 17-03-17 22:35:04.398 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 284 ms overall 17-03-17 22:35:04.488 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1406045800, 0x0, 559484976) end. Duration was 118 ms. 17-03-17 22:35:04.488 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-17 22:35:04.488 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms. 17-03-17 22:35:04.488 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 121 ms. 17-03-17 22:35:04.498 -07 000000459 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 22:35:04.498 -07 000000462 INF: Autofocus start 17-03-17 22:35:04.498 -07 000000462 INF: MeasureProfile start 17-03-17 22:35:04.498 -07 000000415 INF: FPGA: Recv FOCMRRCUR 17-03-17 22:35:04.508 -07 000000459 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-17 22:35:04.508 -07 000000459 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror] 17-03-17 22:35:04.508 -07 000000462 INF: MeasureProfile done 17-03-17 22:35:04.508 -07 000000462 INF: X=0 Z correction [um]=-0.0713522 17-03-17 22:35:04.508 -07 000000462 INF: Autofocus finished 17-03-17 22:35:04.708 -07 000000547 INF: FPGA: Recv FOCMRRIMG 17-03-17 22:35:04.708 -07 000000459 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall 17-03-17 22:35:04.708 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.2236328125, Z-position -0.177685142224919. ---------- 17-03-17 22:35:04.708 -07 000000610 INF: Cycle 65 Tile 5 Exposure Settings A 455 G 219 T 219 C 455 17-03-17 22:35:04.718 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37311, sync = True, waitForSettling = True) 17-03-17 22:35:04.718 -07 000000610 INF: Z Motor: Moving to -0.170799 mm, started at -0.177685 mm, distance = 6.89 um 17-03-17 22:35:04.718 -07 000000610 INF: FPGA: Xmit ZDACW 37311\n [Z Motor] 17-03-17 22:35:04.718 -07 000000551 INF: FPGA: Recv ZDACW 17-03-17 22:35:04.728 -07 000000610 INF: FPGA: 'ZDACW 37311' command took 0 ms to send, 0 ms to get response, and 8 ms overall 17-03-17 22:35:04.728 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 22:35:04.728 -07 000000382 INF: FPGA: Recv ZDACR 37311 17-03-17 22:35:04.738 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:04.738 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-17 22:35:04.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:04.888 -07 000000547 INF: FPGA: Recv ZSGSRD 35874 17-03-17 22:35:04.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:04.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:04.898 -07 000000593 INF: FPGA: Recv ZSGSRD 35881 17-03-17 22:35:04.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:04.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:04.908 -07 000000541 INF: FPGA: Recv ZSGSRD 35883 17-03-17 22:35:04.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:04.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:04.918 -07 000000551 INF: FPGA: Recv ZSGSRD 35877 17-03-17 22:35:04.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:04.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:04.928 -07 000000480 INF: FPGA: Recv ZSGSRD 35882 17-03-17 22:35:04.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:04.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:04.938 -07 000000576 INF: FPGA: Recv ZSGSRD 35880 17-03-17 22:35:04.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:04.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:04.948 -07 000000593 INF: FPGA: Recv ZSGSRD 35875 17-03-17 22:35:04.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:04.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:04.958 -07 000000458 INF: FPGA: Recv ZSGSRD 35879 17-03-17 22:35:04.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:04.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:04.968 -07 000000482 INF: FPGA: Recv ZSGSRD 35872 17-03-17 22:35:04.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:04.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:04.978 -07 000000480 INF: FPGA: Recv ZSGSRD 35877 17-03-17 22:35:04.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:04.988 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 22:35:04.988 -07 000000547 INF: FPGA: Recv ZPIEZORD 31886 17-03-17 22:35:04.998 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:04.998 -07 000000610 INF: Z Motor: Piezo is near 48.1 V (nominally 0 to 100 V), expect near 56.9 V, since DAC is at 5.693 V. Piezo Error = -8.8 V. 17-03-17 22:35:04.998 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.8 um, Read 10 ADC samples: Avg = 35878 (-169.9 uncal um), Error = 0.9 uncal um, Median = 35878 (-169.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35872 (-169.9 uncal um), Max = 35883 (-170.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um) 17-03-17 22:35:04.998 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35878, posNoise = 5, negNoise = 6 17-03-17 22:35:04.998 -07 000000610 INF: Z Motor: After move to -0.170799, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 22:35:04.998 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms) 17-03-17 22:35:04.998 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 22:35:04.998 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 22:35:04.998 -07 000000458 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 22:35:04.998 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-17 22:35:04.998 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-17 22:35:04.998 -07 000000623 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 22:35:04.998 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-17 22:35:04.998 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 22:35:04.998 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms. 17-03-17 22:35:04.998 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-17 22:35:04.998 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms. 17-03-17 22:35:04.998 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-17 22:35:05.008 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms. 17-03-17 22:35:05.008 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-17 22:35:05.008 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms. 17-03-17 22:35:05.008 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-17 22:35:05.018 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms. 17-03-17 22:35:05.018 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms. 17-03-17 22:35:05.018 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms. 17-03-17 22:35:05.018 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms. 17-03-17 22:35:05.018 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 455 455 219 219 37488 150\n [Camera] 17-03-17 22:35:05.218 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-17 22:35:05.458 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 65, FrontChillerTemperature: 4.009895, 17-03-17 22:35:05.668 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 649 17-03-17 22:35:05.668 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 649 17-03-17 22:35:05.678 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 22:35:05.678 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 649 17-03-17 22:35:05.678 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 649 17-03-17 22:35:05.678 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 22:35:05.678 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 22:35:05.678 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 1429532488, 0x0, 391868352) start. 17-03-17 22:35:05.678 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 22:35:05.678 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start. 17-03-17 22:35:05.868 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37488 840 17-03-17 22:35:06.008 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP turning grn on 990 17-03-17 22:35:06.048 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 370 ms. 17-03-17 22:35:06.058 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms. 17-03-17 22:35:06.058 -07 000000382 INF: Camera: CopyActivePixFullImage start. 17-03-17 22:35:06.058 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 1429532488, 0x0, 391868352) end. Duration was 377 ms. 17-03-17 22:35:06.058 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms. 17-03-17 22:35:06.058 -07 000000458 INF: Camera: CopyActivePixFullImage start. 17-03-17 22:35:06.058 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-17 22:35:06.058 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-17 22:35:06.058 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms. 17-03-17 22:35:06.068 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms. 17-03-17 22:35:06.228 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1209 17-03-17 22:35:06.228 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1209 17-03-17 22:35:06.238 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 22:35:06.238 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1209 17-03-17 22:35:06.238 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1209 17-03-17 22:35:06.238 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 22:35:06.238 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 22:35:06.238 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start. 17-03-17 22:35:06.238 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 22:35:06.238 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) start. 17-03-17 22:35:06.428 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP 1402 17-03-17 22:35:06.428 -07 000000459 INF: FPGA: Recv CAMDBLSNAP 17-03-17 22:35:06.428 -07 000000610 INF: FPGA: 'CAMDBLSNAP 455 455 219 219 37488 150' command took 2 ms to send, 1401 ms to get response, and 1408 ms overall 17-03-17 22:35:06.428 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880 17-03-17 22:35:06.428 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.2236328125, Z-Position -0.170811235233235. ------ 17-03-17 22:35:06.428 -07 000000482 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 22:35:06.428 -07 000000480 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.17721 mm 17-03-17 22:35:06.428 -07 000000480 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-17 22:35:06.538 -07 000000547 INF: FPGA: Recv FOCMRRCUR 17-03-17 22:35:06.538 -07 000000482 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 111 ms overall 17-03-17 22:35:06.538 -07 000000551 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True) 17-03-17 22:35:06.538 -07 000000551 INF: Y Motor: Moving to 64.0626 mm, started at 63.2236 mm, delta = 0.8390 mm 17-03-17 22:35:06.538 -07 000000482 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror] 17-03-17 22:35:06.538 -07 000000569 INF: Z Motor: Entering MoveAbsStepped (DAC = 38711, sync = True, waitForSettling = False) 17-03-17 22:35:06.538 -07 000000569 INF: Z Motor: Moving to -0.177208 mm, started at -0.170811 mm, distance = -6.40 um 17-03-17 22:35:06.548 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 22:35:06.548 -07 000000459 INF: FPGA: Recv YRDPOS 129482 17-03-17 22:35:06.558 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 11 ms overall 17-03-17 22:35:06.558 -07 000000551 INF: Y Motor: Encoder = 129482 = motor step 101157.8 = 63.2236 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 22:35:06.558 -07 000000551 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-17 22:35:06.558 -07 000000551 INF: Y Motor: Moving 1342 steps-19 17-03-17 22:35:06.558 -07 000000569 INF: FPGA: Xmit ZDACW 38711\n [Z Motor] 17-03-17 22:35:06.558 -07 000000547 INF: FPGA: Recv ZDACW 17-03-17 22:35:06.568 -07 000000569 INF: FPGA: 'ZDACW 38711' command took 0 ms to send, 0 ms to get response, and 21 ms overall 17-03-17 22:35:06.568 -07 000000569 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 22:35:06.568 -07 000000415 INF: FPGA: Recv ZDACR 38711 17-03-17 22:35:06.578 -07 000000551 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-17 22:35:06.578 -07 000000569 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:06.578 -07 000000569 INF: Z Motor: MoveAbsStepped took 31 ms (did NOT wait for settling yet)) 17-03-17 22:35:06.618 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 381 ms. 17-03-17 22:35:06.618 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms. 17-03-17 22:35:06.618 -07 000000458 INF: Camera: CopyActivePixFullImage start. 17-03-17 22:35:06.618 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 22:35:06.628 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) end. Duration was 385 ms. 17-03-17 22:35:06.628 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms. 17-03-17 22:35:06.628 -07 000000486 INF: Camera: CopyActivePixFullImage start. 17-03-17 22:35:06.628 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms. 17-03-17 22:35:06.628 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 22:35:06.628 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms. 17-03-17 22:35:06.748 -07 000000541 INF: FPGA: Recv FOCMRRFOC 17-03-17 22:35:06.748 -07 000000482 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 200 ms to get response, and 202 ms overall 17-03-17 22:35:06.948 -07 000000627 INF: FPGA: Recv YMVTILE 17-03-17 22:35:06.948 -07 000000551 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall 17-03-17 22:35:06.988 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 22:35:06.988 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 64. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1026, R2=1057, Total=2083. Warn if over 250 bubbles per interval. 17-03-17 22:35:06.988 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 22:35:06.998 -07 000000623 INF: FPGA: Recv YRDPOS 131187 17-03-17 22:35:06.998 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall 17-03-17 22:35:06.998 -07 000000551 INF: Y Motor: Encoder = 131187 = motor step 102489.8 = 64.0562 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 22:35:06.998 -07 000000551 INF: Y Motor: Position error before settling (table move) = -13 encoder counts (-0.006 mm) 17-03-17 22:35:06.998 -07 000000551 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.839 mm, average velocity = 2.113 mm/sec 17-03-17 22:35:07.948 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 22:35:07.948 -07 000000462 INF: FPGA: Recv YRDPOS 131188 17-03-17 22:35:07.958 -07 000000551 INF: FPGA: 'YRDPOS' command took 1 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 22:35:07.958 -07 000000551 INF: Y Motor: Encoder = 131188 = motor step 102490.6 = 64.0566 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 22:35:07.978 -07 000000551 INF: Y Motor: After move to 64.062607, error = -0.005966, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm 17-03-17 22:35:07.978 -07 000000551 INF: Y Motor: Position error after settling (table move) = -12 encoder counts (-0.006 mm), Delta during settling = 1 counts (0.000 mm) 17-03-17 22:35:07.978 -07 000000551 INF: Y Motor: Moved to 64.0566 after 1435 ms (table move) 17-03-17 22:35:07.978 -07 000000480 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177208 mm (DAC = 38711) 17-03-17 22:35:07.978 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:07.978 -07 000000608 INF: FPGA: Recv ZSGSRD 36872 17-03-17 22:35:07.988 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall 17-03-17 22:35:07.988 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:07.988 -07 000000608 INF: FPGA: Recv ZSGSRD 36868 17-03-17 22:35:07.998 -07 000000480 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:07.998 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:07.998 -07 000000576 INF: FPGA: Recv ZSGSRD 36874 17-03-17 22:35:08.008 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:08.008 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:08.008 -07 000000623 INF: FPGA: Recv ZSGSRD 36878 17-03-17 22:35:08.018 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:08.018 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:08.018 -07 000000458 INF: FPGA: Recv ZSGSRD 36877 17-03-17 22:35:08.028 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:08.028 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:08.028 -07 000000502 INF: FPGA: Recv ZSGSRD 36873 17-03-17 22:35:08.038 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:08.038 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:08.038 -07 000000541 INF: FPGA: Recv ZSGSRD 36869 17-03-17 22:35:08.048 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:08.048 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:08.048 -07 000000462 INF: FPGA: Recv ZSGSRD 36870 17-03-17 22:35:08.058 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:08.058 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:08.058 -07 000000547 INF: FPGA: Recv ZSGSRD 36873 17-03-17 22:35:08.068 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:08.068 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:08.068 -07 000000623 INF: FPGA: Recv ZSGSRD 36874 17-03-17 22:35:08.078 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:08.078 -07 000000480 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 22:35:08.078 -07 000000541 INF: FPGA: Recv ZPIEZORD 33218 17-03-17 22:35:08.088 -07 000000480 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:08.088 -07 000000480 INF: Z Motor: Piezo is near 51.0 V (nominally 0 to 100 V), expect near 59.1 V, since DAC is at 5.907 V. Piezo Error = -8.1 V. 17-03-17 22:35:08.088 -07 000000480 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.2 um, Read 10 ADC samples: Avg = 36873 (-176.3 uncal um), Error = 0.9 uncal um, Median = 36873 (-176.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 36868 (-176.3 uncal um), Max = 36878 (-176.3 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um) 17-03-17 22:35:08.088 -07 000000480 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36873, posNoise = 5, negNoise = 5 17-03-17 22:35:08.088 -07 000000480 INF: Z Motor: After move to -0.177208, error = 0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 22:35:08.088 -07 000000480 INF: Z Motor: Settle wait time = 1438 ms, measure time = 104 ms (allowed 150 ms), total time = 1542 ms 17-03-17 22:35:08.088 -07 000000480 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms 17-03-17 22:35:08.138 -07 000000480 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1703 ms 17-03-17 22:35:08.138 -07 000000480 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-17 22:35:08.138 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 22:35:08.138 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 22:35:08.138 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 22:35:08.138 -07 000000623 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 22:35:08.138 -07 000000415 INF: Disarm and arm camera sensor 0: ROITrigger start. 17-03-17 22:35:08.138 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 22:35:08.138 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 22:35:08.138 -07 000000415 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start. 17-03-17 22:35:08.148 -07 000000415 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms. 17-03-17 22:35:08.148 -07 000000415 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start. 17-03-17 22:35:08.148 -07 000000415 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms. 17-03-17 22:35:08.148 -07 000000415 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms. 17-03-17 22:35:08.158 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera] 17-03-17 22:35:08.198 -07 000000623 INF: FPGA: Recv @CAMSNAP turning led on 40 17-03-17 22:35:08.398 -07 000000382 INF: FPGA: Recv @CAMSNAP img rdy 240 17-03-17 22:35:08.398 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240 17-03-17 22:35:08.398 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start. 17-03-17 22:35:08.398 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start. 17-03-17 22:35:08.438 -07 000000415 INF: FPGA: Recv @CAMSNAP 280 17-03-17 22:35:08.438 -07 000000576 INF: FPGA: Recv CAMSNAP 17-03-17 22:35:08.438 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 284 ms overall 17-03-17 22:35:08.518 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 115 ms. 17-03-17 22:35:08.518 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-17 22:35:08.518 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms. 17-03-17 22:35:08.518 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms. 17-03-17 22:35:08.538 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 22:35:08.538 -07 000000502 INF: Autofocus start 17-03-17 22:35:08.538 -07 000000502 INF: MeasureProfile start 17-03-17 22:35:08.538 -07 000000569 INF: FPGA: Recv FOCMRRCUR 17-03-17 22:35:08.548 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall 17-03-17 22:35:08.548 -07 000000480 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror] 17-03-17 22:35:08.548 -07 000000502 INF: MeasureProfile done 17-03-17 22:35:08.548 -07 000000502 INF: X=32 Z correction [um]=0.09220707 17-03-17 22:35:08.548 -07 000000502 INF: Autofocus finished 17-03-17 22:35:08.748 -07 000000415 INF: FPGA: Recv FOCMRRIMG 17-03-17 22:35:08.748 -07 000000480 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall 17-03-17 22:35:08.748 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.056640625, Z-position -0.177203326314287. ---------- 17-03-17 22:35:08.748 -07 000000610 INF: Cycle 65 Tile 6 Exposure Settings A 455 G 219 T 219 C 455 17-03-17 22:35:08.758 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37244, sync = True, waitForSettling = True) 17-03-17 22:35:08.758 -07 000000610 INF: Z Motor: Moving to -0.170492 mm, started at -0.177203 mm, distance = 6.71 um 17-03-17 22:35:08.758 -07 000000610 INF: FPGA: Xmit ZDACW 37244\n [Z Motor] 17-03-17 22:35:08.758 -07 000000627 INF: FPGA: Recv ZDACW 17-03-17 22:35:08.768 -07 000000610 INF: FPGA: 'ZDACW 37244' command took 0 ms to send, 0 ms to get response, and 7 ms overall 17-03-17 22:35:08.768 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 22:35:08.768 -07 000000382 INF: FPGA: Recv ZDACR 37244 17-03-17 22:35:08.778 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:08.778 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-17 22:35:08.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:08.928 -07 000000462 INF: FPGA: Recv ZSGSRD 35831 17-03-17 22:35:08.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:08.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:08.938 -07 000000551 INF: FPGA: Recv ZSGSRD 35831 17-03-17 22:35:08.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:08.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:08.948 -07 000000486 INF: FPGA: Recv ZSGSRD 35835 17-03-17 22:35:08.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:08.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:08.958 -07 000000627 INF: FPGA: Recv ZSGSRD 35829 17-03-17 22:35:08.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:08.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:08.968 -07 000000382 INF: FPGA: Recv ZSGSRD 35833 17-03-17 22:35:08.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:08.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:08.978 -07 000000415 INF: FPGA: Recv ZSGSRD 35833 17-03-17 22:35:08.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:08.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:08.988 -07 000000551 INF: FPGA: Recv ZSGSRD 35832 17-03-17 22:35:08.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:08.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:08.998 -07 000000541 INF: FPGA: Recv ZSGSRD 35829 17-03-17 22:35:09.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:09.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:09.008 -07 000000627 INF: FPGA: Recv ZSGSRD 35829 17-03-17 22:35:09.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:09.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:09.018 -07 000000502 INF: FPGA: Recv ZSGSRD 35831 17-03-17 22:35:09.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:09.028 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 22:35:09.028 -07 000000415 INF: FPGA: Recv ZPIEZORD 31783 17-03-17 22:35:09.038 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:09.038 -07 000000610 INF: Z Motor: Piezo is near 47.9 V (nominally 0 to 100 V), expect near 56.8 V, since DAC is at 5.683 V. Piezo Error = -8.9 V. 17-03-17 22:35:09.038 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.5 um, Read 10 ADC samples: Avg = 35831 (-169.6 uncal um), Error = 0.9 uncal um, Median = 35831 (-169.6 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 35829 (-169.6 uncal um), Max = 35835 (-169.7 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 2 (0.0 uncal um) 17-03-17 22:35:09.038 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35831, posNoise = 4, negNoise = 2 17-03-17 22:35:09.038 -07 000000610 INF: Z Motor: After move to -0.170492, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 22:35:09.038 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms) 17-03-17 22:35:09.038 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 22:35:09.038 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 22:35:09.038 -07 000000486 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-17 22:35:09.038 -07 000000541 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 22:35:09.038 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-17 22:35:09.038 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 22:35:09.038 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 22:35:09.038 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms. 17-03-17 22:35:09.038 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-17 22:35:09.038 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-17 22:35:09.038 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 5 ms. 17-03-17 22:35:09.048 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-17 22:35:09.048 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms. 17-03-17 22:35:09.048 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-17 22:35:09.048 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms. 17-03-17 22:35:09.048 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-17 22:35:09.058 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 17 ms. 17-03-17 22:35:09.058 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 24 ms. 17-03-17 22:35:09.058 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms. 17-03-17 22:35:09.058 -07 000000486 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 24 ms. 17-03-17 22:35:09.068 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 455 455 219 219 37421 150\n [Camera] 17-03-17 22:35:09.268 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-17 22:35:09.718 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 647 17-03-17 22:35:09.718 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 647 17-03-17 22:35:09.718 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 22:35:09.728 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 647 17-03-17 22:35:09.728 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 647 17-03-17 22:35:09.728 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 22:35:09.728 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 22:35:09.728 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start. 17-03-17 22:35:09.728 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 22:35:09.728 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 1406045800, 0x0, 418435064) start. 17-03-17 22:35:09.918 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37421 840 17-03-17 22:35:10.058 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning grn on 990 17-03-17 22:35:10.098 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 1406045800, 0x0, 418435064) end. Duration was 370 ms. 17-03-17 22:35:10.098 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 370 ms. 17-03-17 22:35:10.098 -07 000000551 INF: Camera: CopyActivePixFullImage start. 17-03-17 22:35:10.108 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 22:35:10.108 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 382 ms. 17-03-17 22:35:10.108 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms. 17-03-17 22:35:10.108 -07 000000547 INF: Camera: CopyActivePixFullImage start. 17-03-17 22:35:10.108 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 386 ms. 17-03-17 22:35:10.118 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 22:35:10.118 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms. 17-03-17 22:35:10.288 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1209 17-03-17 22:35:10.288 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1209 17-03-17 22:35:10.288 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 22:35:10.288 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1209 17-03-17 22:35:10.288 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1209 17-03-17 22:35:10.288 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 22:35:10.288 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 22:35:10.288 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start. 17-03-17 22:35:10.288 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 22:35:10.298 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start. 17-03-17 22:35:10.478 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP 1402 17-03-17 22:35:10.478 -07 000000502 INF: FPGA: Recv CAMDBLSNAP 17-03-17 22:35:10.478 -07 000000610 INF: FPGA: 'CAMDBLSNAP 455 455 219 219 37421 150' command took 2 ms to send, 1401 ms to get response, and 1410 ms overall 17-03-17 22:35:10.478 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880 17-03-17 22:35:10.478 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.056640625, Z-Position -0.170509297262572. ------ 17-03-17 22:35:10.478 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 22:35:10.478 -07 000000486 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.17665 mm 17-03-17 22:35:10.478 -07 000000486 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-17 22:35:10.478 -07 000000415 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True) 17-03-17 22:35:10.478 -07 000000593 INF: Z Motor: Entering MoveAbsStepped (DAC = 38589, sync = True, waitForSettling = False) 17-03-17 22:35:10.478 -07 000000593 INF: Z Motor: Moving to -0.176649 mm, started at -0.170509 mm, distance = -6.14 um 17-03-17 22:35:10.478 -07 000000415 INF: Y Motor: Moving to 64.8926 mm, started at 64.0566 mm, delta = 0.8360 mm 17-03-17 22:35:10.488 -07 000000593 INF: FPGA: Xmit ZDACW 38589\n [Z Motor] 17-03-17 22:35:10.488 -07 000000569 INF: FPGA: Recv FOCMRRCUR 17-03-17 22:35:10.488 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall 17-03-17 22:35:10.488 -07 000000482 INF: FPGA: Recv ZDACW 17-03-17 22:35:10.498 -07 000000593 INF: FPGA: 'ZDACW 38589' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 22:35:10.508 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 22:35:10.508 -07 000000459 INF: FPGA: Recv YRDPOS 131188 17-03-17 22:35:10.518 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 30 ms overall 17-03-17 22:35:10.518 -07 000000415 INF: Y Motor: Encoder = 131188 = motor step 102490.6 = 64.0566 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 22:35:10.518 -07 000000415 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-17 22:35:10.518 -07 000000415 INF: Y Motor: Moving 1338 steps-13 17-03-17 22:35:10.518 -07 000000462 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror] 17-03-17 22:35:10.528 -07 000000593 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 22:35:10.528 -07 000000569 INF: FPGA: Recv ZDACR 38589 17-03-17 22:35:10.538 -07 000000593 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 39 ms overall 17-03-17 22:35:10.538 -07 000000593 INF: Z Motor: MoveAbsStepped took 50 ms (did NOT wait for settling yet)) 17-03-17 22:35:10.538 -07 000000415 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-17 22:35:10.688 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 398 ms. 17-03-17 22:35:10.688 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms. 17-03-17 22:35:10.688 -07 000000623 INF: Camera: CopyActivePixFullImage start. 17-03-17 22:35:10.688 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 399 ms. 17-03-17 22:35:10.688 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms. 17-03-17 22:35:10.688 -07 000000627 INF: Camera: CopyActivePixFullImage start. 17-03-17 22:35:10.698 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-17 22:35:10.698 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-17 22:35:10.698 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms. 17-03-17 22:35:10.698 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms. 17-03-17 22:35:10.718 -07 000000482 INF: FPGA: Recv FOCMRRFOC 17-03-17 22:35:10.718 -07 000000462 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 193 ms to get response, and 229 ms overall 17-03-17 22:35:10.818 -07 000000458 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 65, FrontChillerTemperature: 4.03576, 17-03-17 22:35:10.908 -07 000000462 INF: FPGA: Recv YMVTILE 17-03-17 22:35:10.908 -07 000000415 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 398 ms overall 17-03-17 22:35:10.948 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 22:35:10.958 -07 000000459 INF: FPGA: Recv YRDPOS 132871 17-03-17 22:35:10.958 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall 17-03-17 22:35:10.958 -07 000000415 INF: Y Motor: Encoder = 132871 = motor step 103805.5 = 64.8784 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 22:35:10.958 -07 000000415 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm) 17-03-17 22:35:10.958 -07 000000415 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.836 mm, average velocity = 2.100 mm/sec 17-03-17 22:35:11.908 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 22:35:11.908 -07 000000576 INF: FPGA: Recv YRDPOS 132871 17-03-17 22:35:11.918 -07 000000415 INF: FPGA: 'YRDPOS' command took 1 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 22:35:11.918 -07 000000415 INF: Y Motor: Encoder = 132871 = motor step 103805.5 = 64.8784 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 22:35:11.938 -07 000000415 INF: Y Motor: After move to 64.892609, error = -0.014191, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm 17-03-17 22:35:11.938 -07 000000415 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm) 17-03-17 22:35:11.938 -07 000000415 INF: Y Motor: Moved to 64.8784 after 1455 ms (table move) 17-03-17 22:35:11.938 -07 000000486 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176649 mm (DAC = 38589) 17-03-17 22:35:11.938 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:11.948 -07 000000415 INF: FPGA: Recv ZSGSRD 36794 17-03-17 22:35:11.948 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall 17-03-17 22:35:11.948 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:11.948 -07 000000576 INF: FPGA: Recv ZSGSRD 36786 17-03-17 22:35:11.958 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall 17-03-17 22:35:11.958 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:11.958 -07 000000541 INF: FPGA: Recv ZSGSRD 36790 17-03-17 22:35:11.968 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:11.968 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:11.968 -07 000000608 INF: FPGA: Recv ZSGSRD 36790 17-03-17 22:35:11.978 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:11.978 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:11.978 -07 000000458 INF: FPGA: Recv ZSGSRD 36795 17-03-17 22:35:11.988 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:11.988 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:11.988 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 22:35:11.988 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 64. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1026, R2=1057, Total=2083. Warn if over 250 bubbles per interval. 17-03-17 22:35:11.988 -07 000000482 INF: FPGA: Recv ZSGSRD 36790 17-03-17 22:35:11.998 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:11.998 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:11.998 -07 000000462 INF: FPGA: Recv ZSGSRD 36781 17-03-17 22:35:12.008 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:12.008 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:12.008 -07 000000458 INF: FPGA: Recv ZSGSRD 36789 17-03-17 22:35:12.018 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:12.018 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:12.018 -07 000000623 INF: FPGA: Recv ZSGSRD 36782 17-03-17 22:35:12.028 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:12.028 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:12.028 -07 000000480 INF: FPGA: Recv ZSGSRD 36785 17-03-17 22:35:12.038 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:12.038 -07 000000486 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 22:35:12.038 -07 000000627 INF: FPGA: Recv ZPIEZORD 33106 17-03-17 22:35:12.048 -07 000000486 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:12.048 -07 000000486 INF: Z Motor: Piezo is near 50.7 V (nominally 0 to 100 V), expect near 58.9 V, since DAC is at 5.888 V. Piezo Error = -8.2 V. 17-03-17 22:35:12.048 -07 000000486 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.6 um, Read 10 ADC samples: Avg = 36788 (-175.8 uncal um), Error = 0.9 uncal um, Median = 36790 (-175.8 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36781 (-175.7 uncal um), Max = 36795 (-175.8 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um) 17-03-17 22:35:12.048 -07 000000486 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36788, posNoise = 7, negNoise = 7 17-03-17 22:35:12.048 -07 000000486 INF: Z Motor: After move to -0.176649, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 22:35:12.048 -07 000000486 INF: Z Motor: Settle wait time = 1459 ms, measure time = 102 ms (allowed 150 ms), total time = 1561 ms 17-03-17 22:35:12.048 -07 000000486 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms 17-03-17 22:35:12.098 -07 000000486 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1613 ms 17-03-17 22:35:12.098 -07 000000486 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-17 22:35:12.098 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 22:35:12.098 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 22:35:12.098 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 22:35:12.098 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 22:35:12.098 -07 000000459 INF: Disarm and arm camera sensor 0: ROITrigger start. 17-03-17 22:35:12.098 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 22:35:12.108 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 22:35:12.108 -07 000000459 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start. 17-03-17 22:35:12.108 -07 000000459 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms. 17-03-17 22:35:12.108 -07 000000459 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start. 17-03-17 22:35:12.118 -07 000000459 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms. 17-03-17 22:35:12.118 -07 000000459 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms. 17-03-17 22:35:12.118 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera] 17-03-17 22:35:12.168 -07 000000459 INF: FPGA: Recv @CAMSNAP turning led on 40 17-03-17 22:35:12.368 -07 000000382 INF: FPGA: Recv @CAMSNAP img rdy 240 17-03-17 22:35:12.368 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240 17-03-17 22:35:12.368 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start. 17-03-17 22:35:12.368 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1481829816, 0x0, 559484976) start. 17-03-17 22:35:12.398 -07 000000459 INF: FPGA: Recv @CAMSNAP 280 17-03-17 22:35:12.408 -07 000000415 INF: FPGA: Recv CAMSNAP 17-03-17 22:35:12.408 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 284 ms overall 17-03-17 22:35:12.478 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1481829816, 0x0, 559484976) end. Duration was 114 ms. 17-03-17 22:35:12.478 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-17 22:35:12.478 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms. 17-03-17 22:35:12.478 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms. 17-03-17 22:35:12.508 -07 000000627 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 22:35:12.508 -07 000000576 INF: Autofocus start 17-03-17 22:35:12.508 -07 000000576 INF: MeasureProfile start 17-03-17 22:35:12.508 -07 000000502 INF: FPGA: Recv FOCMRRCUR 17-03-17 22:35:12.518 -07 000000627 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall 17-03-17 22:35:12.518 -07 000000627 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror] 17-03-17 22:35:12.528 -07 000000576 INF: MeasureProfile done 17-03-17 22:35:12.528 -07 000000576 INF: X=64 Z correction [um]=0.2557664 17-03-17 22:35:12.528 -07 000000576 INF: Autofocus finished 17-03-17 22:35:12.718 -07 000000458 INF: FPGA: Recv FOCMRRIMG 17-03-17 22:35:12.718 -07 000000627 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall 17-03-17 22:35:12.718 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87841796875, Z-position -0.176657268282237. ---------- 17-03-17 22:35:12.718 -07 000000610 INF: Cycle 65 Tile 7 Exposure Settings A 455 G 219 T 219 C 455 17-03-17 22:35:12.728 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37158, sync = True, waitForSettling = True) 17-03-17 22:35:12.728 -07 000000610 INF: Z Motor: Moving to -0.170098 mm, started at -0.176657 mm, distance = 6.56 um 17-03-17 22:35:12.728 -07 000000610 INF: FPGA: Xmit ZDACW 37158\n [Z Motor] 17-03-17 22:35:12.728 -07 000000486 INF: FPGA: Recv ZDACW 17-03-17 22:35:12.738 -07 000000610 INF: FPGA: 'ZDACW 37158' command took 0 ms to send, 0 ms to get response, and 8 ms overall 17-03-17 22:35:12.738 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 22:35:12.738 -07 000000462 INF: FPGA: Recv ZDACR 37158 17-03-17 22:35:12.748 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:12.748 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-17 22:35:12.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:12.898 -07 000000569 INF: FPGA: Recv ZSGSRD 35770 17-03-17 22:35:12.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 22:35:12.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:12.908 -07 000000547 INF: FPGA: Recv ZSGSRD 35772 17-03-17 22:35:12.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:12.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:12.918 -07 000000415 INF: FPGA: Recv ZSGSRD 35771 17-03-17 22:35:12.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:12.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:12.928 -07 000000482 INF: FPGA: Recv ZSGSRD 35765 17-03-17 22:35:12.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:12.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:12.938 -07 000000382 INF: FPGA: Recv ZSGSRD 35776 17-03-17 22:35:12.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:12.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:12.948 -07 000000569 INF: FPGA: Recv ZSGSRD 35770 17-03-17 22:35:12.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:12.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:12.958 -07 000000415 INF: FPGA: Recv ZSGSRD 35769 17-03-17 22:35:12.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:12.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:12.968 -07 000000486 INF: FPGA: Recv ZSGSRD 35771 17-03-17 22:35:12.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:12.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:12.978 -07 000000627 INF: FPGA: Recv ZSGSRD 35772 17-03-17 22:35:12.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:12.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:12.988 -07 000000608 INF: FPGA: Recv ZSGSRD 35777 17-03-17 22:35:12.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:12.998 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 22:35:12.998 -07 000000547 INF: FPGA: Recv ZPIEZORD 31747 17-03-17 22:35:13.008 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:13.008 -07 000000610 INF: Z Motor: Piezo is near 47.8 V (nominally 0 to 100 V), expect near 56.7 V, since DAC is at 5.670 V. Piezo Error = -8.9 V. 17-03-17 22:35:13.008 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.1 um, Read 10 ADC samples: Avg = 35771 (-169.2 uncal um), Error = 0.8 uncal um, Median = 35771 (-169.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35765 (-169.2 uncal um), Max = 35777 (-169.3 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um) 17-03-17 22:35:13.008 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35771, posNoise = 6, negNoise = 6 17-03-17 22:35:13.008 -07 000000610 INF: Z Motor: After move to -0.170098, error = -0.000025, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 22:35:13.008 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms) 17-03-17 22:35:13.008 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 22:35:13.008 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 22:35:13.008 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 22:35:13.008 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-17 22:35:13.008 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-17 22:35:13.008 -07 000000623 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-17 22:35:13.008 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 22:35:13.008 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 22:35:13.008 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms. 17-03-17 22:35:13.008 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-17 22:35:13.008 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 22:35:13.008 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-17 22:35:13.018 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms. 17-03-17 22:35:13.018 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-17 22:35:13.018 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms. 17-03-17 22:35:13.018 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-17 22:35:13.028 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms. 17-03-17 22:35:13.028 -07 000000623 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 12 ms. 17-03-17 22:35:13.028 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms. 17-03-17 22:35:13.028 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms. 17-03-17 22:35:13.028 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 455 455 219 219 37334 150\n [Camera] 17-03-17 22:35:13.228 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-17 22:35:13.678 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 647 17-03-17 22:35:13.678 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 647 17-03-17 22:35:13.678 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 22:35:13.678 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 22:35:13.678 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start. 17-03-17 22:35:13.688 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 647 17-03-17 22:35:13.688 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 647 17-03-17 22:35:13.688 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 22:35:13.688 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 22:35:13.688 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start. 17-03-17 22:35:13.878 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37334 840 17-03-17 22:35:14.028 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP turning grn on 990 17-03-17 22:35:14.058 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 374 ms. 17-03-17 22:35:14.058 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms. 17-03-17 22:35:14.058 -07 000000458 INF: Camera: CopyActivePixFullImage start. 17-03-17 22:35:14.058 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 377 ms. 17-03-17 22:35:14.058 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms. 17-03-17 22:35:14.058 -07 000000482 INF: Camera: CopyActivePixFullImage start. 17-03-17 22:35:14.068 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms. 17-03-17 22:35:14.068 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms. 17-03-17 22:35:14.068 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms. 17-03-17 22:35:14.068 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms. 17-03-17 22:35:14.248 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1209 17-03-17 22:35:14.248 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1209 17-03-17 22:35:14.248 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 22:35:14.248 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 22:35:14.248 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start. 17-03-17 22:35:14.248 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1209 17-03-17 22:35:14.248 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1209 17-03-17 22:35:14.248 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 22:35:14.248 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 22:35:14.248 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start. 17-03-17 22:35:14.438 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP 1401 17-03-17 22:35:14.438 -07 000000547 INF: FPGA: Recv CAMDBLSNAP 17-03-17 22:35:14.438 -07 000000610 INF: FPGA: 'CAMDBLSNAP 455 455 219 219 37334 150' command took 2 ms to send, 1402 ms to get response, and 1409 ms overall 17-03-17 22:35:14.438 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880 17-03-17 22:35:14.438 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.87841796875, Z-Position -0.170123844534066. ------ 17-03-17 22:35:14.438 -07 000000593 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 22:35:14.438 -07 000000608 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.17655 mm 17-03-17 22:35:14.438 -07 000000608 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-17 22:35:14.548 -07 000000482 INF: FPGA: Recv FOCMRRCUR 17-03-17 22:35:14.548 -07 000000593 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 112 ms overall 17-03-17 22:35:14.558 -07 000000593 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror] 17-03-17 22:35:14.558 -07 000000502 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True) 17-03-17 22:35:14.558 -07 000000502 INF: Y Motor: Moving to 65.7226 mm, started at 64.8784 mm, delta = 0.8442 mm 17-03-17 22:35:14.558 -07 000000415 INF: Z Motor: Entering MoveAbsStepped (DAC = 38567, sync = True, waitForSettling = False) 17-03-17 22:35:14.558 -07 000000415 INF: Z Motor: Moving to -0.176548 mm, started at -0.170124 mm, distance = -6.42 um 17-03-17 22:35:14.568 -07 000000415 INF: FPGA: Xmit ZDACW 38567\n [Z Motor] 17-03-17 22:35:14.568 -07 000000382 INF: FPGA: Recv ZDACW 17-03-17 22:35:14.578 -07 000000415 INF: FPGA: 'ZDACW 38567' command took 0 ms to send, 0 ms to get response, and 18 ms overall 17-03-17 22:35:14.578 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 22:35:14.578 -07 000000569 INF: FPGA: Recv YRDPOS 132871 17-03-17 22:35:14.588 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 29 ms overall 17-03-17 22:35:14.588 -07 000000502 INF: Y Motor: Encoder = 132871 = motor step 103805.5 = 64.8784 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 22:35:14.588 -07 000000502 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-17 22:35:14.588 -07 000000502 INF: Y Motor: Moving 1351 steps-29 17-03-17 22:35:14.588 -07 000000415 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 22:35:14.588 -07 000000382 INF: FPGA: Recv ZDACR 38567 17-03-17 22:35:14.598 -07 000000415 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 19 ms overall 17-03-17 22:35:14.598 -07 000000415 INF: Z Motor: MoveAbsStepped took 39 ms (did NOT wait for settling yet)) 17-03-17 22:35:14.598 -07 000000502 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-17 22:35:14.628 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 388 ms. 17-03-17 22:35:14.638 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms. 17-03-17 22:35:14.638 -07 000000459 INF: Camera: CopyActivePixFullImage start. 17-03-17 22:35:14.638 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 386 ms. 17-03-17 22:35:14.638 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 386 ms. 17-03-17 22:35:14.638 -07 000000458 INF: Camera: CopyActivePixFullImage start. 17-03-17 22:35:14.638 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 22:35:14.638 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms. 17-03-17 22:35:14.638 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms. 17-03-17 22:35:14.648 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms. 17-03-17 22:35:14.758 -07 000000569 INF: FPGA: Recv FOCMRRFOC 17-03-17 22:35:14.758 -07 000000593 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall 17-03-17 22:35:14.968 -07 000000541 INF: FPGA: Recv YMVTILE 17-03-17 22:35:14.968 -07 000000502 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 388 ms overall 17-03-17 22:35:15.008 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 22:35:15.018 -07 000000593 INF: FPGA: Recv YRDPOS 134581 17-03-17 22:35:15.028 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 22:35:15.028 -07 000000502 INF: Y Motor: Encoder = 134581 = motor step 105141.4 = 65.7134 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 22:35:15.028 -07 000000502 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm) 17-03-17 22:35:15.028 -07 000000502 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 390 ms, distance = 0.844 mm, average velocity = 2.165 mm/sec 17-03-17 22:35:15.978 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 22:35:15.978 -07 000000486 INF: FPGA: Recv YRDPOS 134582 17-03-17 22:35:15.988 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 22:35:15.988 -07 000000502 INF: Y Motor: Encoder = 134582 = motor step 105142.2 = 65.7139 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 22:35:16.008 -07 000000502 INF: Y Motor: After move to 65.722610, error = -0.008743, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm 17-03-17 22:35:16.008 -07 000000502 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 1 counts (0.000 mm) 17-03-17 22:35:16.008 -07 000000502 INF: Y Motor: Moved to 65.7139 after 1459 ms (table move) 17-03-17 22:35:16.018 -07 000000608 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176548 mm (DAC = 38567) 17-03-17 22:35:16.018 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:16.018 -07 000000623 INF: FPGA: Recv ZSGSRD 36773 17-03-17 22:35:16.028 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-17 22:35:16.028 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:16.028 -07 000000569 INF: FPGA: Recv ZSGSRD 36773 17-03-17 22:35:16.038 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:16.038 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:16.038 -07 000000502 INF: FPGA: Recv ZSGSRD 36772 17-03-17 22:35:16.048 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:16.048 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:16.048 -07 000000459 INF: FPGA: Recv ZSGSRD 36769 17-03-17 22:35:16.058 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:16.058 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:16.058 -07 000000480 INF: FPGA: Recv ZSGSRD 36769 17-03-17 22:35:16.068 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:16.068 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:16.068 -07 000000415 INF: FPGA: Recv ZSGSRD 36767 17-03-17 22:35:16.078 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:16.078 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:16.078 -07 000000551 INF: FPGA: Recv ZSGSRD 36766 17-03-17 22:35:16.088 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:16.088 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:16.088 -07 000000459 INF: FPGA: Recv ZSGSRD 36776 17-03-17 22:35:16.098 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:16.098 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:16.098 -07 000000627 INF: FPGA: Recv ZSGSRD 36775 17-03-17 22:35:16.108 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:16.108 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:16.108 -07 000000593 INF: FPGA: Recv ZSGSRD 36776 17-03-17 22:35:16.118 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:16.118 -07 000000608 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 22:35:16.118 -07 000000462 INF: FPGA: Recv ZPIEZORD 33100 17-03-17 22:35:16.128 -07 000000608 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:16.128 -07 000000608 INF: Z Motor: Piezo is near 50.7 V (nominally 0 to 100 V), expect near 58.8 V, since DAC is at 5.885 V. Piezo Error = -8.1 V. 17-03-17 22:35:16.128 -07 000000608 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.5 um, Read 10 ADC samples: Avg = 36772 (-175.7 uncal um), Error = 0.9 uncal um, Median = 36772 (-175.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 36766 (-175.6 uncal um), Max = 36776 (-175.7 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um) 17-03-17 22:35:16.128 -07 000000608 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36772, posNoise = 4, negNoise = 6 17-03-17 22:35:16.128 -07 000000608 INF: Z Motor: After move to -0.176548, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 22:35:16.128 -07 000000608 INF: Z Motor: Settle wait time = 1462 ms, measure time = 107 ms (allowed 150 ms), total time = 1569 ms 17-03-17 22:35:16.128 -07 000000608 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms 17-03-17 22:35:16.178 -07 000000608 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1732 ms 17-03-17 22:35:16.178 -07 000000608 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-17 22:35:16.178 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 22:35:16.178 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 22:35:16.178 -07 000000482 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 22:35:16.178 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 22:35:16.178 -07 000000459 INF: Disarm and arm camera sensor 0: ROITrigger start. 17-03-17 22:35:16.178 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 22:35:16.178 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms. 17-03-17 22:35:16.178 -07 000000459 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start. 17-03-17 22:35:16.188 -07 000000547 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 65, FrontChillerTemperature: 4.003063, 17-03-17 22:35:16.188 -07 000000459 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms. 17-03-17 22:35:16.188 -07 000000459 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start. 17-03-17 22:35:16.188 -07 000000459 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms. 17-03-17 22:35:16.188 -07 000000459 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms. 17-03-17 22:35:16.218 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera] 17-03-17 22:35:16.258 -07 000000627 INF: FPGA: Recv @CAMSNAP turning led on 40 17-03-17 22:35:16.458 -07 000000541 INF: FPGA: Recv @CAMSNAP img rdy 240 17-03-17 22:35:16.458 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240 17-03-17 22:35:16.458 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start. 17-03-17 22:35:16.458 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start. 17-03-17 22:35:16.498 -07 000000462 INF: FPGA: Recv @CAMSNAP 280 17-03-17 22:35:16.498 -07 000000482 INF: FPGA: Recv CAMSNAP 17-03-17 22:35:16.498 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 302 ms overall 17-03-17 22:35:16.578 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms. 17-03-17 22:35:16.578 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-17 22:35:16.578 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms. 17-03-17 22:35:16.578 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms. 17-03-17 22:35:16.598 -07 000000458 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 22:35:16.598 -07 000000382 INF: Autofocus start 17-03-17 22:35:16.598 -07 000000382 INF: MeasureProfile start 17-03-17 22:35:16.598 -07 000000459 INF: FPGA: Recv FOCMRRCUR 17-03-17 22:35:16.608 -07 000000458 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall 17-03-17 22:35:16.608 -07 000000458 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror] 17-03-17 22:35:16.608 -07 000000382 INF: MeasureProfile done 17-03-17 22:35:16.608 -07 000000382 INF: X=32 Z correction [um]=0.09220707 17-03-17 22:35:16.608 -07 000000382 INF: Autofocus finished 17-03-17 22:35:16.808 -07 000000459 INF: FPGA: Recv FOCMRRIMG 17-03-17 22:35:16.808 -07 000000458 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall 17-03-17 22:35:16.808 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.7138671875, Z-position -0.176554480887969. ---------- 17-03-17 22:35:16.808 -07 000000610 INF: Cycle 65 Tile 8 Exposure Settings A 455 G 219 T 219 C 455 17-03-17 22:35:16.818 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37100, sync = True, waitForSettling = True) 17-03-17 22:35:16.818 -07 000000610 INF: Z Motor: Moving to -0.169833 mm, started at -0.176554 mm, distance = 6.72 um 17-03-17 22:35:16.818 -07 000000610 INF: FPGA: Xmit ZDACW 37100\n [Z Motor] 17-03-17 22:35:16.818 -07 000000502 INF: FPGA: Recv ZDACW 17-03-17 22:35:16.828 -07 000000610 INF: FPGA: 'ZDACW 37100' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:16.828 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 22:35:16.828 -07 000000623 INF: FPGA: Recv ZDACR 37100 17-03-17 22:35:16.838 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:16.838 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-17 22:35:16.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:16.988 -07 000000623 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 22:35:16.988 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 64. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1026, R2=1057, Total=2083. Warn if over 250 bubbles per interval. 17-03-17 22:35:16.988 -07 000000486 INF: FPGA: Recv ZSGSRD 35728 17-03-17 22:35:16.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 22:35:16.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:16.998 -07 000000502 INF: FPGA: Recv ZSGSRD 35723 17-03-17 22:35:17.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:17.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:17.008 -07 000000458 INF: FPGA: Recv ZSGSRD 35727 17-03-17 22:35:17.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:17.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:17.018 -07 000000541 INF: FPGA: Recv ZSGSRD 35728 17-03-17 22:35:17.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:17.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:17.028 -07 000000547 INF: FPGA: Recv ZSGSRD 35730 17-03-17 22:35:17.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:17.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:17.038 -07 000000480 INF: FPGA: Recv ZSGSRD 35726 17-03-17 22:35:17.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:17.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:17.048 -07 000000593 INF: FPGA: Recv ZSGSRD 35726 17-03-17 22:35:17.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:17.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:17.058 -07 000000459 INF: FPGA: Recv ZSGSRD 35728 17-03-17 22:35:17.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:17.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:17.068 -07 000000482 INF: FPGA: Recv ZSGSRD 35728 17-03-17 22:35:17.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:17.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:17.078 -07 000000576 INF: FPGA: Recv ZSGSRD 35728 17-03-17 22:35:17.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:17.088 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 22:35:17.088 -07 000000480 INF: FPGA: Recv ZPIEZORD 31686 17-03-17 22:35:17.098 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:17.098 -07 000000610 INF: Z Motor: Piezo is near 47.7 V (nominally 0 to 100 V), expect near 56.6 V, since DAC is at 5.661 V. Piezo Error = -8.9 V. 17-03-17 22:35:17.098 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.8 um, Read 10 ADC samples: Avg = 35727 (-169.0 uncal um), Error = 0.9 uncal um, Median = 35728 (-169.0 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 35723 (-168.9 uncal um), Max = 35730 (-169.0 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um) 17-03-17 22:35:17.098 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35727, posNoise = 3, negNoise = 4 17-03-17 22:35:17.098 -07 000000610 INF: Z Motor: After move to -0.169833, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 22:35:17.098 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms) 17-03-17 22:35:17.098 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 22:35:17.098 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 22:35:17.098 -07 000000459 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 22:35:17.098 -07 000000627 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-17 22:35:17.098 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-17 22:35:17.098 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-17 22:35:17.098 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 22:35:17.098 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 22:35:17.098 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms. 17-03-17 22:35:17.098 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-17 22:35:17.098 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 22:35:17.098 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-17 22:35:17.108 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms. 17-03-17 22:35:17.108 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-17 22:35:17.108 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms. 17-03-17 22:35:17.108 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-17 22:35:17.118 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms. 17-03-17 22:35:17.118 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms. 17-03-17 22:35:17.118 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 12 ms. 17-03-17 22:35:17.118 -07 000000627 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms. 17-03-17 22:35:17.118 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 455 455 219 219 37277 150\n [Camera] 17-03-17 22:35:17.318 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-17 22:35:17.778 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 649 17-03-17 22:35:17.778 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 649 17-03-17 22:35:17.778 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 22:35:17.778 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 649 17-03-17 22:35:17.778 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 649 17-03-17 22:35:17.778 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 22:35:17.778 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 22:35:17.778 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start. 17-03-17 22:35:17.788 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 22:35:17.788 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 1406045800, 0x0, 418435064) start. 17-03-17 22:35:17.968 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37277 840 17-03-17 22:35:18.118 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP turning grn on 990 17-03-17 22:35:18.168 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 1406045800, 0x0, 418435064) end. Duration was 379 ms. 17-03-17 22:35:18.168 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms. 17-03-17 22:35:18.168 -07 000000593 INF: Camera: CopyActivePixFullImage start. 17-03-17 22:35:18.168 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 385 ms. 17-03-17 22:35:18.168 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms. 17-03-17 22:35:18.168 -07 000000459 INF: Camera: CopyActivePixFullImage start. 17-03-17 22:35:18.168 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 22:35:18.168 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 22:35:18.168 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 394 ms. 17-03-17 22:35:18.178 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms. 17-03-17 22:35:18.338 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1209 17-03-17 22:35:18.338 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1209 17-03-17 22:35:18.338 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 22:35:18.338 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1209 17-03-17 22:35:18.338 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1209 17-03-17 22:35:18.338 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 22:35:18.348 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 22:35:18.348 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 1441468064, 0x0, 391868352) start. 17-03-17 22:35:18.348 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 22:35:18.348 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start. 17-03-17 22:35:18.638 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP 1401 17-03-17 22:35:18.638 -07 000000458 INF: FPGA: Recv CAMDBLSNAP 17-03-17 22:35:18.638 -07 000000610 INF: FPGA: 'CAMDBLSNAP 455 455 219 219 37277 150' command took 2 ms to send, 1518 ms to get response, and 1523 ms overall 17-03-17 22:35:18.648 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880 17-03-17 22:35:18.648 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.7138671875, Z-Position -0.169841179199829. ------ 17-03-17 22:35:18.648 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 22:35:18.648 -07 000000569 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.17615 mm 17-03-17 22:35:18.648 -07 000000569 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-17 22:35:18.648 -07 000000462 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True) 17-03-17 22:35:18.648 -07 000000382 INF: FPGA: Recv FOCMRRCUR 17-03-17 22:35:18.648 -07 000000462 INF: Y Motor: Moving to 66.5526 mm, started at 65.7139 mm, delta = 0.8387 mm 17-03-17 22:35:18.648 -07 000000415 INF: Z Motor: Entering MoveAbsStepped (DAC = 38481, sync = True, waitForSettling = False) 17-03-17 22:35:18.648 -07 000000415 INF: Z Motor: Moving to -0.176155 mm, started at -0.169841 mm, distance = -6.31 um 17-03-17 22:35:18.658 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-17 22:35:18.658 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 22:35:18.658 -07 000000551 INF: FPGA: Recv YRDPOS 134582 17-03-17 22:35:18.668 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall 17-03-17 22:35:18.668 -07 000000462 INF: Y Motor: Encoder = 134582 = motor step 105142.2 = 65.7139 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 22:35:18.668 -07 000000462 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-17 22:35:18.668 -07 000000462 INF: Y Motor: Moving 1342 steps-19 17-03-17 22:35:18.668 -07 000000415 INF: FPGA: Xmit ZDACW 38481\n [Z Motor] 17-03-17 22:35:18.668 -07 000000593 INF: FPGA: Recv ZDACW 17-03-17 22:35:18.678 -07 000000608 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror] 17-03-17 22:35:18.678 -07 000000415 INF: FPGA: 'ZDACW 38481' command took 1 ms to send, 0 ms to get response, and 22 ms overall 17-03-17 22:35:18.688 -07 000000462 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-17 22:35:18.698 -07 000000415 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 22:35:18.698 -07 000000576 INF: FPGA: Recv ZDACR 38481 17-03-17 22:35:18.708 -07 000000415 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall 17-03-17 22:35:18.708 -07 000000415 INF: Z Motor: MoveAbsStepped took 52 ms (did NOT wait for settling yet)) 17-03-17 22:35:18.738 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 395 ms. 17-03-17 22:35:18.738 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms. 17-03-17 22:35:18.738 -07 000000623 INF: Camera: CopyActivePixFullImage start. 17-03-17 22:35:18.738 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 1441468064, 0x0, 391868352) end. Duration was 398 ms. 17-03-17 22:35:18.738 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms. 17-03-17 22:35:18.738 -07 000000627 INF: Camera: CopyActivePixFullImage start. 17-03-17 22:35:18.748 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-17 22:35:18.748 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-17 22:35:18.748 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms. 17-03-17 22:35:18.758 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms. 17-03-17 22:35:18.878 -07 000000458 INF: FPGA: Recv FOCMRRFOC 17-03-17 22:35:18.878 -07 000000608 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall 17-03-17 22:35:19.058 -07 000000482 INF: FPGA: Recv YMVTILE 17-03-17 22:35:19.058 -07 000000462 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall 17-03-17 22:35:19.098 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 22:35:19.108 -07 000000541 INF: FPGA: Recv YRDPOS 136271 17-03-17 22:35:19.108 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 2 ms overall 17-03-17 22:35:19.108 -07 000000462 INF: Y Motor: Encoder = 136271 = motor step 106461.7 = 66.5386 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 22:35:19.108 -07 000000462 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm) 17-03-17 22:35:19.108 -07 000000462 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.839 mm, average velocity = 2.113 mm/sec 17-03-17 22:35:20.058 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 22:35:20.058 -07 000000547 INF: FPGA: Recv YRDPOS 136271 17-03-17 22:35:20.068 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 22:35:20.068 -07 000000462 INF: Y Motor: Encoder = 136271 = motor step 106461.7 = 66.5386 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 22:35:20.088 -07 000000462 INF: Y Motor: After move to 66.552605, error = -0.014030, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm 17-03-17 22:35:20.088 -07 000000462 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm) 17-03-17 22:35:20.088 -07 000000462 INF: Y Motor: Moved to 66.5386 after 1439 ms (table move) 17-03-17 22:35:20.088 -07 000000569 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176155 mm (DAC = 38481) 17-03-17 22:35:20.098 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:20.098 -07 000000576 INF: FPGA: Recv ZSGSRD 36712 17-03-17 22:35:20.108 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 22:35:20.108 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:20.108 -07 000000541 INF: FPGA: Recv ZSGSRD 36712 17-03-17 22:35:20.118 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:20.118 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:20.118 -07 000000459 INF: FPGA: Recv ZSGSRD 36713 17-03-17 22:35:20.128 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:20.128 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:20.128 -07 000000482 INF: FPGA: Recv ZSGSRD 36718 17-03-17 22:35:20.138 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:20.138 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:20.138 -07 000000627 INF: FPGA: Recv ZSGSRD 36712 17-03-17 22:35:20.148 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:20.148 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:20.148 -07 000000541 INF: FPGA: Recv ZSGSRD 36710 17-03-17 22:35:20.158 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:20.158 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:20.158 -07 000000593 INF: FPGA: Recv ZSGSRD 36707 17-03-17 22:35:20.168 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:20.168 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:20.168 -07 000000482 INF: FPGA: Recv ZSGSRD 36707 17-03-17 22:35:20.178 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:20.178 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:20.178 -07 000000482 INF: FPGA: Recv ZSGSRD 36712 17-03-17 22:35:20.188 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall 17-03-17 22:35:20.188 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:20.188 -07 000000486 INF: FPGA: Recv ZSGSRD 36707 17-03-17 22:35:20.198 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:20.198 -07 000000569 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 22:35:20.198 -07 000000541 INF: FPGA: Recv ZPIEZORD 33064 17-03-17 22:35:20.208 -07 000000569 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:20.208 -07 000000569 INF: Z Motor: Piezo is near 50.6 V (nominally 0 to 100 V), expect near 58.7 V, since DAC is at 5.872 V. Piezo Error = -8.1 V. 17-03-17 22:35:20.208 -07 000000569 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.2 um, Read 10 ADC samples: Avg = 36711 (-175.3 uncal um), Error = 0.9 uncal um, Median = 36712 (-175.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36707 (-175.2 uncal um), Max = 36718 (-175.3 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um) 17-03-17 22:35:20.208 -07 000000569 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36711, posNoise = 7, negNoise = 4 17-03-17 22:35:20.208 -07 000000569 INF: Z Motor: After move to -0.176155, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 22:35:20.208 -07 000000569 INF: Z Motor: Settle wait time = 1442 ms, measure time = 111 ms (allowed 150 ms), total time = 1553 ms 17-03-17 22:35:20.208 -07 000000569 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms 17-03-17 22:35:20.248 -07 000000569 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1596 ms 17-03-17 22:35:20.248 -07 000000569 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-17 22:35:20.248 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 22:35:20.248 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 22:35:20.248 -07 000000486 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 22:35:20.248 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 22:35:20.248 -07 000000623 INF: Disarm and arm camera sensor 0: ROITrigger start. 17-03-17 22:35:20.248 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 22:35:20.248 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 22:35:20.248 -07 000000623 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start. 17-03-17 22:35:20.258 -07 000000623 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms. 17-03-17 22:35:20.258 -07 000000623 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start. 17-03-17 22:35:20.268 -07 000000623 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms. 17-03-17 22:35:20.268 -07 000000623 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms. 17-03-17 22:35:20.268 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera] 17-03-17 22:35:20.318 -07 000000458 INF: FPGA: Recv @CAMSNAP turning led on 40 17-03-17 22:35:20.518 -07 000000551 INF: FPGA: Recv @CAMSNAP img rdy 240 17-03-17 22:35:20.518 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240 17-03-17 22:35:20.518 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start. 17-03-17 22:35:20.518 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start. 17-03-17 22:35:20.558 -07 000000623 INF: FPGA: Recv @CAMSNAP 280 17-03-17 22:35:20.558 -07 000000541 INF: FPGA: Recv CAMSNAP 17-03-17 22:35:20.558 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 286 ms overall 17-03-17 22:35:20.628 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 113 ms. 17-03-17 22:35:20.628 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-17 22:35:20.628 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms. 17-03-17 22:35:20.628 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 116 ms. 17-03-17 22:35:20.658 -07 000000486 INF: Autofocus start 17-03-17 22:35:20.658 -07 000000486 INF: MeasureProfile start 17-03-17 22:35:20.658 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 22:35:20.658 -07 000000502 INF: FPGA: Recv FOCMRRCUR 17-03-17 22:35:20.668 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-17 22:35:20.668 -07 000000608 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror] 17-03-17 22:35:20.668 -07 000000486 INF: MeasureProfile done 17-03-17 22:35:20.668 -07 000000486 INF: X=48 Z correction [um]=0.1739867 17-03-17 22:35:20.668 -07 000000486 INF: Autofocus finished 17-03-17 22:35:20.868 -07 000000502 INF: FPGA: Recv FOCMRRIMG 17-03-17 22:35:20.868 -07 000000608 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall 17-03-17 22:35:20.868 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.53857421875, Z-position -0.176162603947321. ---------- 17-03-17 22:35:20.868 -07 000000610 INF: Cycle 65 Tile 9 Exposure Settings A 455 G 219 T 219 C 455 17-03-17 22:35:20.878 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37032, sync = True, waitForSettling = True) 17-03-17 22:35:20.878 -07 000000610 INF: Z Motor: Moving to -0.169522 mm, started at -0.176163 mm, distance = 6.64 um 17-03-17 22:35:20.878 -07 000000610 INF: FPGA: Xmit ZDACW 37032\n [Z Motor] 17-03-17 22:35:20.878 -07 000000551 INF: FPGA: Recv ZDACW 17-03-17 22:35:20.888 -07 000000610 INF: FPGA: 'ZDACW 37032' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:20.888 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 22:35:20.888 -07 000000382 INF: FPGA: Recv ZDACR 37032 17-03-17 22:35:20.898 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall 17-03-17 22:35:20.898 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-17 22:35:21.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:21.048 -07 000000627 INF: FPGA: Recv ZSGSRD 35682 17-03-17 22:35:21.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 22:35:21.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:21.058 -07 000000486 INF: FPGA: Recv ZSGSRD 35677 17-03-17 22:35:21.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:21.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:21.068 -07 000000480 INF: FPGA: Recv ZSGSRD 35679 17-03-17 22:35:21.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:21.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:21.078 -07 000000576 INF: FPGA: Recv ZSGSRD 35680 17-03-17 22:35:21.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:21.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:21.088 -07 000000459 INF: FPGA: Recv ZSGSRD 35678 17-03-17 22:35:21.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:21.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:21.098 -07 000000551 INF: FPGA: Recv ZSGSRD 35677 17-03-17 22:35:21.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:21.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:21.108 -07 000000547 INF: FPGA: Recv ZSGSRD 35678 17-03-17 22:35:21.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:21.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:21.118 -07 000000480 INF: FPGA: Recv ZSGSRD 35676 17-03-17 22:35:21.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:21.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:21.128 -07 000000569 INF: FPGA: Recv ZSGSRD 35674 17-03-17 22:35:21.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:21.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:21.138 -07 000000593 INF: FPGA: Recv ZSGSRD 35677 17-03-17 22:35:21.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:21.148 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 22:35:21.148 -07 000000415 INF: FPGA: Recv ZPIEZORD 31644 17-03-17 22:35:21.158 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:21.158 -07 000000610 INF: Z Motor: Piezo is near 47.6 V (nominally 0 to 100 V), expect near 56.5 V, since DAC is at 5.651 V. Piezo Error = -8.9 V. 17-03-17 22:35:21.158 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.5 um, Read 10 ADC samples: Avg = 35678 (-168.7 uncal um), Error = 0.9 uncal um, Median = 35678 (-168.7 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35674 (-168.6 uncal um), Max = 35682 (-168.7 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um) 17-03-17 22:35:21.158 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35678, posNoise = 4, negNoise = 4 17-03-17 22:35:21.158 -07 000000610 INF: Z Motor: After move to -0.169522, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 22:35:21.158 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms) 17-03-17 22:35:21.158 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 22:35:21.158 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 22:35:21.158 -07 000000458 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 22:35:21.158 -07 000000459 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 22:35:21.158 -07 000000593 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-17 22:35:21.158 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 22:35:21.158 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms. 17-03-17 22:35:21.158 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-17 22:35:21.158 -07 000000547 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-17 22:35:21.158 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-17 22:35:21.158 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms. 17-03-17 22:35:21.158 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-17 22:35:21.158 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms. 17-03-17 22:35:21.158 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-17 22:35:21.168 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms. 17-03-17 22:35:21.168 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-17 22:35:21.168 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms. 17-03-17 22:35:21.168 -07 000000593 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 11 ms. 17-03-17 22:35:21.178 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms. 17-03-17 22:35:21.178 -07 000000547 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms. 17-03-17 22:35:21.178 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 455 455 219 219 37208 150\n [Camera] 17-03-17 22:35:21.378 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-17 22:35:21.568 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 65, FrontChillerTemperature: 3.994908, 17-03-17 22:35:21.828 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 647 17-03-17 22:35:21.828 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 647 17-03-17 22:35:21.828 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 22:35:21.838 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 647 17-03-17 22:35:21.838 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 647 17-03-17 22:35:21.838 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 22:35:21.838 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 22:35:21.838 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start. 17-03-17 22:35:21.838 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 22:35:21.838 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 1406045800, 0x0, 418435064) start. 17-03-17 22:35:21.988 -07 000000415 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 22:35:21.988 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 64. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1026, R2=1057, Total=2083. Warn if over 250 bubbles per interval. 17-03-17 22:35:22.028 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37208 840 17-03-17 22:35:22.178 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning grn on 992 17-03-17 22:35:22.208 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 372 ms. 17-03-17 22:35:22.208 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 372 ms. 17-03-17 22:35:22.208 -07 000000547 INF: Camera: CopyActivePixFullImage start. 17-03-17 22:35:22.208 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 1406045800, 0x0, 418435064) end. Duration was 370 ms. 17-03-17 22:35:22.208 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 370 ms. 17-03-17 22:35:22.208 -07 000000482 INF: Camera: CopyActivePixFullImage start. 17-03-17 22:35:22.218 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-17 22:35:22.218 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms. 17-03-17 22:35:22.218 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms. 17-03-17 22:35:22.228 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms. 17-03-17 22:35:22.398 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1212 17-03-17 22:35:22.398 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1212 17-03-17 22:35:22.398 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 22:35:22.398 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1212 17-03-17 22:35:22.398 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1212 17-03-17 22:35:22.398 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 22:35:22.398 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 22:35:22.398 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start. 17-03-17 22:35:22.408 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 22:35:22.408 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 1130172064, 0x0, 391868352) start. 17-03-17 22:35:22.588 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP 1402 17-03-17 22:35:22.588 -07 000000486 INF: FPGA: Recv CAMDBLSNAP 17-03-17 22:35:22.588 -07 000000610 INF: FPGA: 'CAMDBLSNAP 455 455 219 219 37208 150' command took 2 ms to send, 1402 ms to get response, and 1409 ms overall 17-03-17 22:35:22.588 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880 17-03-17 22:35:22.588 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.53857421875, Z-Position -0.169526392804882. ------ 17-03-17 22:35:22.588 -07 000000627 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 22:35:22.588 -07 000000623 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.17634 mm 17-03-17 22:35:22.588 -07 000000623 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-17 22:35:22.588 -07 000000502 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True) 17-03-17 22:35:22.588 -07 000000502 INF: Y Motor: Moving to 67.3826 mm, started at 66.5386 mm, delta = 0.8440 mm 17-03-17 22:35:22.588 -07 000000462 INF: Z Motor: Entering MoveAbsStepped (DAC = 38520, sync = True, waitForSettling = False) 17-03-17 22:35:22.598 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 22:35:22.598 -07 000000480 INF: FPGA: Recv FOCMRRCUR 17-03-17 22:35:22.598 -07 000000627 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall 17-03-17 22:35:22.598 -07 000000462 INF: Z Motor: Moving to -0.176333 mm, started at -0.169526 mm, distance = -6.81 um 17-03-17 22:35:22.598 -07 000000608 INF: FPGA: Recv YRDPOS 136271 17-03-17 22:35:22.608 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 22:35:22.608 -07 000000627 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror] 17-03-17 22:35:22.608 -07 000000502 INF: Y Motor: Encoder = 136271 = motor step 106461.7 = 66.5386 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 22:35:22.608 -07 000000502 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-17 22:35:22.608 -07 000000502 INF: Y Motor: Moving 1350 steps-29 17-03-17 22:35:22.618 -07 000000462 INF: FPGA: Xmit ZDACW 38520\n [Z Motor] 17-03-17 22:35:22.618 -07 000000541 INF: FPGA: Recv ZDACW 17-03-17 22:35:22.628 -07 000000502 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-17 22:35:22.628 -07 000000462 INF: FPGA: 'ZDACW 38520' command took 0 ms to send, 0 ms to get response, and 26 ms overall 17-03-17 22:35:22.638 -07 000000462 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 22:35:22.638 -07 000000569 INF: FPGA: Recv ZDACR 38520 17-03-17 22:35:22.648 -07 000000462 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall 17-03-17 22:35:22.648 -07 000000462 INF: Z Motor: MoveAbsStepped took 47 ms (did NOT wait for settling yet)) 17-03-17 22:35:22.798 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 1130172064, 0x0, 391868352) end. Duration was 397 ms. 17-03-17 22:35:22.798 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms. 17-03-17 22:35:22.798 -07 000000415 INF: Camera: CopyActivePixFullImage start. 17-03-17 22:35:22.808 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 401 ms. 17-03-17 22:35:22.808 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms. 17-03-17 22:35:22.808 -07 000000382 INF: Camera: CopyActivePixFullImage start. 17-03-17 22:35:22.808 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 22:35:22.808 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms. 17-03-17 22:35:22.808 -07 000000541 INF: FPGA: Recv FOCMRRFOC 17-03-17 22:35:22.808 -07 000000627 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 209 ms overall 17-03-17 22:35:22.808 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 22:35:22.818 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms. 17-03-17 22:35:22.998 -07 000000480 INF: FPGA: Recv YMVTILE 17-03-17 22:35:22.998 -07 000000502 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall 17-03-17 22:35:23.038 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 22:35:23.048 -07 000000569 INF: FPGA: Recv YRDPOS 137977 17-03-17 22:35:23.048 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall 17-03-17 22:35:23.048 -07 000000502 INF: Y Motor: Encoder = 137977 = motor step 107794.5 = 67.3716 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 22:35:23.048 -07 000000502 INF: Y Motor: Position error before settling (table move) = -23 encoder counts (-0.011 mm) 17-03-17 22:35:23.048 -07 000000502 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.844 mm, average velocity = 2.126 mm/sec 17-03-17 22:35:23.998 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 22:35:23.998 -07 000000569 INF: FPGA: Recv YRDPOS 137977 17-03-17 22:35:24.008 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 22:35:24.008 -07 000000502 INF: Y Motor: Encoder = 137977 = motor step 107794.5 = 67.3716 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 22:35:24.028 -07 000000502 INF: Y Motor: After move to 67.382607, error = -0.011024, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm 17-03-17 22:35:24.028 -07 000000502 INF: Y Motor: Position error after settling (table move) = -23 encoder counts (-0.011 mm), Delta during settling = 0 counts (0.000 mm) 17-03-17 22:35:24.028 -07 000000502 INF: Y Motor: Moved to 67.3716 after 1436 ms (table move) 17-03-17 22:35:24.028 -07 000000623 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176333 mm (DAC = 38520) 17-03-17 22:35:24.028 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:24.038 -07 000000576 INF: FPGA: Recv ZSGSRD 36744 17-03-17 22:35:24.038 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall 17-03-17 22:35:24.038 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:24.038 -07 000000547 INF: FPGA: Recv ZSGSRD 36732 17-03-17 22:35:24.048 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall 17-03-17 22:35:24.048 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:24.048 -07 000000480 INF: FPGA: Recv ZSGSRD 36744 17-03-17 22:35:24.058 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:24.058 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:24.058 -07 000000482 INF: FPGA: Recv ZSGSRD 36742 17-03-17 22:35:24.068 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:24.068 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:24.068 -07 000000541 INF: FPGA: Recv ZSGSRD 36738 17-03-17 22:35:24.078 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:24.078 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:24.078 -07 000000458 INF: FPGA: Recv ZSGSRD 36744 17-03-17 22:35:24.088 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:24.088 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:24.088 -07 000000480 INF: FPGA: Recv ZSGSRD 36736 17-03-17 22:35:24.098 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:24.098 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:24.098 -07 000000608 INF: FPGA: Recv ZSGSRD 36730 17-03-17 22:35:24.108 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:24.108 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:24.108 -07 000000541 INF: FPGA: Recv ZSGSRD 36736 17-03-17 22:35:24.118 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:24.118 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:24.118 -07 000000551 INF: FPGA: Recv ZSGSRD 36735 17-03-17 22:35:24.128 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:24.128 -07 000000623 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 22:35:24.128 -07 000000480 INF: FPGA: Recv ZPIEZORD 33095 17-03-17 22:35:24.138 -07 000000623 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:24.138 -07 000000623 INF: Z Motor: Piezo is near 50.7 V (nominally 0 to 100 V), expect near 58.8 V, since DAC is at 5.878 V. Piezo Error = -8.1 V. 17-03-17 22:35:24.138 -07 000000623 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.3 um, Read 10 ADC samples: Avg = 36738 (-175.4 uncal um), Error = 0.9 uncal um, Median = 36737 (-175.4 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36730 (-175.4 uncal um), Max = 36744 (-175.5 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um) 17-03-17 22:35:24.138 -07 000000623 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36738, posNoise = 6, negNoise = 8 17-03-17 22:35:24.138 -07 000000623 INF: Z Motor: After move to -0.176333, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 22:35:24.138 -07 000000623 INF: Z Motor: Settle wait time = 1435 ms, measure time = 101 ms (allowed 150 ms), total time = 1536 ms 17-03-17 22:35:24.138 -07 000000623 INF: Z Motor: Waiting extra 49 ms after reading position to reach expected total of 150 ms 17-03-17 22:35:24.188 -07 000000623 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1592 ms 17-03-17 22:35:24.188 -07 000000623 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-17 22:35:24.188 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 22:35:24.188 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 22:35:24.188 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 22:35:24.188 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger start. 17-03-17 22:35:24.188 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 22:35:24.188 -07 000000551 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 22:35:24.188 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms. 17-03-17 22:35:24.188 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start. 17-03-17 22:35:24.198 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms. 17-03-17 22:35:24.198 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start. 17-03-17 22:35:24.198 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms. 17-03-17 22:35:24.198 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms. 17-03-17 22:35:24.208 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera] 17-03-17 22:35:24.248 -07 000000462 INF: FPGA: Recv @CAMSNAP turning led on 40 17-03-17 22:35:24.448 -07 000000458 INF: FPGA: Recv @CAMSNAP img rdy 240 17-03-17 22:35:24.448 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240 17-03-17 22:35:24.448 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start. 17-03-17 22:35:24.448 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1476890328, 0x0, 559484976) start. 17-03-17 22:35:24.488 -07 000000551 INF: FPGA: Recv @CAMSNAP 280 17-03-17 22:35:24.488 -07 000000480 INF: FPGA: Recv CAMSNAP 17-03-17 22:35:24.488 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 275 ms to get response, and 284 ms overall 17-03-17 22:35:24.568 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1476890328, 0x0, 559484976) end. Duration was 114 ms. 17-03-17 22:35:24.568 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-17 22:35:24.568 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms. 17-03-17 22:35:24.568 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms. 17-03-17 22:35:24.588 -07 000000547 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 22:35:24.588 -07 000000569 INF: Autofocus start 17-03-17 22:35:24.588 -07 000000569 INF: MeasureProfile start 17-03-17 22:35:24.598 -07 000000459 INF: FPGA: Recv FOCMRRCUR 17-03-17 22:35:24.598 -07 000000547 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 5 ms overall 17-03-17 22:35:24.598 -07 000000547 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror] 17-03-17 22:35:24.608 -07 000000569 INF: MeasureProfile done 17-03-17 22:35:24.608 -07 000000569 INF: X=16 Z correction [um]=0.01042744 17-03-17 22:35:24.608 -07 000000569 INF: Autofocus finished 17-03-17 22:35:24.798 -07 000000480 INF: FPGA: Recv FOCMRRIMG 17-03-17 22:35:24.798 -07 000000547 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 202 ms overall 17-03-17 22:35:24.798 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.37158203125, Z-position -0.176336057675149. ---------- 17-03-17 22:35:24.808 -07 000000610 INF: Cycle 65 Tile 10 Exposure Settings A 455 G 219 T 219 C 455 17-03-17 22:35:24.808 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37035, sync = True, waitForSettling = True) 17-03-17 22:35:24.808 -07 000000610 INF: Z Motor: Moving to -0.169535 mm, started at -0.176336 mm, distance = 6.80 um 17-03-17 22:35:24.808 -07 000000610 INF: FPGA: Xmit ZDACW 37035\n [Z Motor] 17-03-17 22:35:24.808 -07 000000462 INF: FPGA: Recv ZDACW 17-03-17 22:35:24.818 -07 000000610 INF: FPGA: 'ZDACW 37035' command took 0 ms to send, 0 ms to get response, and 5 ms overall 17-03-17 22:35:24.818 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 22:35:24.818 -07 000000627 INF: FPGA: Recv ZDACR 37035 17-03-17 22:35:24.828 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:24.828 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-17 22:35:24.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:24.978 -07 000000541 INF: FPGA: Recv ZSGSRD 35681 17-03-17 22:35:24.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:24.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:24.988 -07 000000415 INF: FPGA: Recv ZSGSRD 35683 17-03-17 22:35:24.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:24.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:24.998 -07 000000502 INF: FPGA: Recv ZSGSRD 35677 17-03-17 22:35:25.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:25.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:25.008 -07 000000486 INF: FPGA: Recv ZSGSRD 35681 17-03-17 22:35:25.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:25.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:25.018 -07 000000458 INF: FPGA: Recv ZSGSRD 35680 17-03-17 22:35:25.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:25.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:25.028 -07 000000541 INF: FPGA: Recv ZSGSRD 35685 17-03-17 22:35:25.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:25.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:25.038 -07 000000569 INF: FPGA: Recv ZSGSRD 35683 17-03-17 22:35:25.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:25.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:25.048 -07 000000623 INF: FPGA: Recv ZSGSRD 35674 17-03-17 22:35:25.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:25.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:25.058 -07 000000480 INF: FPGA: Recv ZSGSRD 35686 17-03-17 22:35:25.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:25.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:25.068 -07 000000458 INF: FPGA: Recv ZSGSRD 35680 17-03-17 22:35:25.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:25.078 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 22:35:25.078 -07 000000459 INF: FPGA: Recv ZPIEZORD 31675 17-03-17 22:35:25.088 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:25.088 -07 000000610 INF: Z Motor: Piezo is near 47.7 V (nominally 0 to 100 V), expect near 56.5 V, since DAC is at 5.651 V. Piezo Error = -8.8 V. 17-03-17 22:35:25.088 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.5 um, Read 10 ADC samples: Avg = 35681 (-168.7 uncal um), Error = 0.9 uncal um, Median = 35681 (-168.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35674 (-168.6 uncal um), Max = 35686 (-168.7 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um) 17-03-17 22:35:25.088 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35681, posNoise = 5, negNoise = 7 17-03-17 22:35:25.088 -07 000000610 INF: Z Motor: After move to -0.169535, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 22:35:25.088 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms) 17-03-17 22:35:25.088 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 22:35:25.088 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 22:35:25.088 -07 000000482 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 22:35:25.088 -07 000000458 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-17 22:35:25.088 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 22:35:25.088 -07 000000593 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-17 22:35:25.088 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-17 22:35:25.088 -07 000000547 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 22:35:25.088 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 22:35:25.088 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-17 22:35:25.088 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms. 17-03-17 22:35:25.088 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-17 22:35:25.098 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms. 17-03-17 22:35:25.098 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-17 22:35:25.098 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms. 17-03-17 22:35:25.098 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-17 22:35:25.108 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms. 17-03-17 22:35:25.108 -07 000000458 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms. 17-03-17 22:35:25.108 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms. 17-03-17 22:35:25.108 -07 000000593 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms. 17-03-17 22:35:25.108 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 455 455 219 219 37212 150\n [Camera] 17-03-17 22:35:25.308 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-17 22:35:25.768 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 647 17-03-17 22:35:25.768 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 647 17-03-17 22:35:25.768 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 22:35:25.768 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 22:35:25.768 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start. 17-03-17 22:35:25.768 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 647 17-03-17 22:35:25.768 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 647 17-03-17 22:35:25.768 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 22:35:25.768 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 22:35:25.768 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start. 17-03-17 22:35:25.958 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37212 840 17-03-17 22:35:26.108 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning grn on 990 17-03-17 22:35:26.158 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 392 ms. 17-03-17 22:35:26.158 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms. 17-03-17 22:35:26.158 -07 000000382 INF: Camera: CopyActivePixFullImage start. 17-03-17 22:35:26.158 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 391 ms. 17-03-17 22:35:26.158 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms. 17-03-17 22:35:26.158 -07 000000480 INF: Camera: CopyActivePixFullImage start. 17-03-17 22:35:26.158 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-17 22:35:26.158 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 397 ms. 17-03-17 22:35:26.168 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms. 17-03-17 22:35:26.168 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 404 ms. 17-03-17 22:35:26.328 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1209 17-03-17 22:35:26.328 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1209 17-03-17 22:35:26.328 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 22:35:26.328 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 22:35:26.328 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start. 17-03-17 22:35:26.328 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1209 17-03-17 22:35:26.328 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1209 17-03-17 22:35:26.328 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 22:35:26.328 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 22:35:26.328 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start. 17-03-17 22:35:26.518 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP 1402 17-03-17 22:35:26.518 -07 000000502 INF: FPGA: Recv CAMDBLSNAP 17-03-17 22:35:26.518 -07 000000610 INF: FPGA: 'CAMDBLSNAP 455 455 219 219 37212 150' command took 2 ms to send, 1404 ms to get response, and 1409 ms overall 17-03-17 22:35:26.518 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880 17-03-17 22:35:26.518 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.37158203125, Z-Position -0.169545665441308. ------ 17-03-17 22:35:26.518 -07 000000459 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 22:35:26.518 -07 000000415 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.17592 mm 17-03-17 22:35:26.518 -07 000000415 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-17 22:35:26.528 -07 000000541 INF: FPGA: Recv FOCMRRCUR 17-03-17 22:35:26.638 -07 000000593 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True) 17-03-17 22:35:26.638 -07 000000593 INF: Y Motor: Moving to 68.2126 mm, started at 67.3716 mm, delta = 0.8410 mm 17-03-17 22:35:26.638 -07 000000627 INF: Z Motor: Entering MoveAbsStepped (DAC = 38430, sync = True, waitForSettling = False) 17-03-17 22:35:26.638 -07 000000627 INF: Z Motor: Moving to -0.175921 mm, started at -0.169546 mm, distance = -6.38 um 17-03-17 22:35:26.638 -07 000000459 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 113 ms to get response, and 115 ms overall 17-03-17 22:35:26.648 -07 000000459 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror] 17-03-17 22:35:26.658 -07 000000593 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 22:35:26.658 -07 000000576 INF: FPGA: Recv YRDPOS 137977 17-03-17 22:35:26.668 -07 000000627 INF: FPGA: Xmit ZDACW 38430\n [Z Motor] 17-03-17 22:35:26.668 -07 000000593 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 25 ms overall 17-03-17 22:35:26.668 -07 000000593 INF: Y Motor: Encoder = 137977 = motor step 107794.5 = 67.3716 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 22:35:26.668 -07 000000593 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-17 22:35:26.668 -07 000000593 INF: Y Motor: Moving 1346 steps-23 17-03-17 22:35:26.668 -07 000000462 INF: FPGA: Recv ZDACW 17-03-17 22:35:26.678 -07 000000627 INF: FPGA: 'ZDACW 38430' command took 0 ms to send, 0 ms to get response, and 35 ms overall 17-03-17 22:35:26.678 -07 000000627 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 22:35:26.678 -07 000000547 INF: FPGA: Recv ZDACR 38430 17-03-17 22:35:26.688 -07 000000627 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:26.688 -07 000000593 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-17 22:35:26.688 -07 000000627 INF: Z Motor: MoveAbsStepped took 45 ms (did NOT wait for settling yet)) 17-03-17 22:35:26.728 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 397 ms. 17-03-17 22:35:26.728 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms. 17-03-17 22:35:26.728 -07 000000482 INF: Camera: CopyActivePixFullImage start. 17-03-17 22:35:26.728 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 397 ms. 17-03-17 22:35:26.728 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms. 17-03-17 22:35:26.728 -07 000000569 INF: Camera: CopyActivePixFullImage start. 17-03-17 22:35:26.728 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 22:35:26.728 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms. 17-03-17 22:35:26.728 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms. 17-03-17 22:35:26.738 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms. 17-03-17 22:35:26.848 -07 000000502 INF: FPGA: Recv FOCMRRFOC 17-03-17 22:35:26.848 -07 000000459 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 207 ms overall 17-03-17 22:35:26.958 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 65, FrontChillerTemperature: 3.98264, 17-03-17 22:35:26.988 -07 000000486 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 22:35:26.988 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 64. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1026, R2=1057, Total=2083. Warn if over 250 bubbles per interval. 17-03-17 22:35:27.058 -07 000000482 INF: FPGA: Recv YMVTILE 17-03-17 22:35:27.058 -07 000000593 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall 17-03-17 22:35:27.098 -07 000000593 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 22:35:27.108 -07 000000486 INF: FPGA: Recv YRDPOS 139682 17-03-17 22:35:27.108 -07 000000593 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall 17-03-17 22:35:27.108 -07 000000593 INF: Y Motor: Encoder = 139682 = motor step 109126.6 = 68.2041 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 22:35:27.108 -07 000000593 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm) 17-03-17 22:35:27.108 -07 000000593 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.841 mm, average velocity = 2.118 mm/sec 17-03-17 22:35:28.058 -07 000000593 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 22:35:28.058 -07 000000382 INF: FPGA: Recv YRDPOS 139683 17-03-17 22:35:28.068 -07 000000593 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 22:35:28.068 -07 000000593 INF: Y Motor: Encoder = 139683 = motor step 109127.3 = 68.2046 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 22:35:28.088 -07 000000593 INF: Y Motor: After move to 68.212608, error = -0.008018, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm 17-03-17 22:35:28.088 -07 000000593 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 1 counts (0.000 mm) 17-03-17 22:35:28.088 -07 000000593 INF: Y Motor: Moved to 68.2046 after 1450 ms (table move) 17-03-17 22:35:28.088 -07 000000415 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175921 mm (DAC = 38430) 17-03-17 22:35:28.088 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:28.098 -07 000000623 INF: FPGA: Recv ZSGSRD 36670 17-03-17 22:35:28.098 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 3 ms to get response, and 5 ms overall 17-03-17 22:35:28.098 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:28.098 -07 000000541 INF: FPGA: Recv ZSGSRD 36679 17-03-17 22:35:28.108 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-17 22:35:28.108 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:28.108 -07 000000458 INF: FPGA: Recv ZSGSRD 36675 17-03-17 22:35:28.118 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:28.118 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:28.118 -07 000000462 INF: FPGA: Recv ZSGSRD 36671 17-03-17 22:35:28.128 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:28.128 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:28.128 -07 000000482 INF: FPGA: Recv ZSGSRD 36675 17-03-17 22:35:28.138 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:28.138 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:28.138 -07 000000569 INF: FPGA: Recv ZSGSRD 36681 17-03-17 22:35:28.148 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:28.148 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:28.148 -07 000000627 INF: FPGA: Recv ZSGSRD 36671 17-03-17 22:35:28.158 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:28.158 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:28.158 -07 000000480 INF: FPGA: Recv ZSGSRD 36668 17-03-17 22:35:28.168 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:28.168 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:28.168 -07 000000482 INF: FPGA: Recv ZSGSRD 36671 17-03-17 22:35:28.178 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:28.178 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:28.178 -07 000000551 INF: FPGA: Recv ZSGSRD 36675 17-03-17 22:35:28.188 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:28.188 -07 000000415 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 22:35:28.188 -07 000000627 INF: FPGA: Recv ZPIEZORD 33019 17-03-17 22:35:28.198 -07 000000415 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:28.198 -07 000000415 INF: Z Motor: Piezo is near 50.5 V (nominally 0 to 100 V), expect near 58.6 V, since DAC is at 5.864 V. Piezo Error = -8.1 V. 17-03-17 22:35:28.198 -07 000000415 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.9 um, Read 10 ADC samples: Avg = 36674 (-175.0 uncal um), Error = 0.9 uncal um, Median = 36673 (-175.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36668 (-175.0 uncal um), Max = 36681 (-175.1 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um) 17-03-17 22:35:28.198 -07 000000415 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36674, posNoise = 7, negNoise = 6 17-03-17 22:35:28.198 -07 000000415 INF: Z Motor: After move to -0.175921, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 22:35:28.198 -07 000000415 INF: Z Motor: Settle wait time = 1453 ms, measure time = 103 ms (allowed 150 ms), total time = 1556 ms 17-03-17 22:35:28.198 -07 000000415 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms 17-03-17 22:35:28.248 -07 000000415 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1721 ms 17-03-17 22:35:28.248 -07 000000415 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-17 22:35:28.248 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 22:35:28.248 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 22:35:28.248 -07 000000623 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 22:35:28.248 -07 000000547 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 22:35:28.248 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger start. 17-03-17 22:35:28.248 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 22:35:28.258 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 22:35:28.258 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start. 17-03-17 22:35:28.258 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms. 17-03-17 22:35:28.258 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start. 17-03-17 22:35:28.268 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms. 17-03-17 22:35:28.268 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms. 17-03-17 22:35:28.268 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera] 17-03-17 22:35:28.318 -07 000000547 INF: FPGA: Recv @CAMSNAP turning led on 40 17-03-17 22:35:28.518 -07 000000551 INF: FPGA: Recv @CAMSNAP img rdy 240 17-03-17 22:35:28.518 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240 17-03-17 22:35:28.518 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start. 17-03-17 22:35:28.518 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start. 17-03-17 22:35:28.558 -07 000000593 INF: FPGA: Recv @CAMSNAP 280 17-03-17 22:35:28.558 -07 000000458 INF: FPGA: Recv CAMSNAP 17-03-17 22:35:28.558 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 284 ms to get response, and 286 ms overall 17-03-17 22:35:28.638 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 119 ms. 17-03-17 22:35:28.638 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-17 22:35:28.638 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms. 17-03-17 22:35:28.638 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 121 ms. 17-03-17 22:35:28.658 -07 000000541 INF: Autofocus start 17-03-17 22:35:28.658 -07 000000541 INF: MeasureProfile start 17-03-17 22:35:28.658 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 22:35:28.658 -07 000000382 INF: FPGA: Recv FOCMRRCUR 17-03-17 22:35:28.668 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-17 22:35:28.668 -07 000000462 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror] 17-03-17 22:35:28.668 -07 000000541 INF: MeasureProfile done 17-03-17 22:35:28.668 -07 000000541 INF: X=-16 Z correction [um]=-0.1496812 17-03-17 22:35:28.668 -07 000000541 INF: Autofocus finished 17-03-17 22:35:28.868 -07 000000480 INF: FPGA: Recv FOCMRRIMG 17-03-17 22:35:28.868 -07 000000462 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall 17-03-17 22:35:28.868 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.20458984375, Z-position -0.175924908098076. ---------- 17-03-17 22:35:28.868 -07 000000610 INF: Cycle 65 Tile 11 Exposure Settings A 455 G 219 T 219 C 455 17-03-17 22:35:28.878 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36909, sync = True, waitForSettling = True) 17-03-17 22:35:28.878 -07 000000610 INF: Z Motor: Moving to -0.168959 mm, started at -0.175925 mm, distance = 6.97 um 17-03-17 22:35:28.878 -07 000000610 INF: FPGA: Xmit ZDACW 36909\n [Z Motor] 17-03-17 22:35:28.878 -07 000000459 INF: FPGA: Recv ZDACW 17-03-17 22:35:28.888 -07 000000610 INF: FPGA: 'ZDACW 36909' command took 0 ms to send, 0 ms to get response, and 8 ms overall 17-03-17 22:35:28.888 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 22:35:28.888 -07 000000462 INF: FPGA: Recv ZDACR 36909 17-03-17 22:35:28.898 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:28.898 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-17 22:35:29.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:29.048 -07 000000593 INF: FPGA: Recv ZSGSRD 35592 17-03-17 22:35:29.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 22:35:29.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:29.058 -07 000000547 INF: FPGA: Recv ZSGSRD 35596 17-03-17 22:35:29.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:29.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:29.068 -07 000000541 INF: FPGA: Recv ZSGSRD 35587 17-03-17 22:35:29.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:29.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:29.078 -07 000000623 INF: FPGA: Recv ZSGSRD 35588 17-03-17 22:35:29.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:29.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:29.088 -07 000000482 INF: FPGA: Recv ZSGSRD 35589 17-03-17 22:35:29.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:29.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:29.098 -07 000000502 INF: FPGA: Recv ZSGSRD 35597 17-03-17 22:35:29.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:29.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:29.108 -07 000000462 INF: FPGA: Recv ZSGSRD 35586 17-03-17 22:35:29.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:29.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:29.118 -07 000000458 INF: FPGA: Recv ZSGSRD 35588 17-03-17 22:35:29.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:29.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:29.128 -07 000000623 INF: FPGA: Recv ZSGSRD 35595 17-03-17 22:35:29.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:29.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:29.138 -07 000000547 INF: FPGA: Recv ZSGSRD 35588 17-03-17 22:35:29.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:29.148 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 22:35:29.148 -07 000000627 INF: FPGA: Recv ZPIEZORD 31555 17-03-17 22:35:29.158 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:29.158 -07 000000610 INF: Z Motor: Piezo is near 47.4 V (nominally 0 to 100 V), expect near 56.3 V, since DAC is at 5.632 V. Piezo Error = -8.9 V. 17-03-17 22:35:29.158 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.0 um, Read 10 ADC samples: Avg = 35591 (-168.1 uncal um), Error = 0.9 uncal um, Median = 35588 (-168.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35586 (-168.1 uncal um), Max = 35597 (-168.1 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um) 17-03-17 22:35:29.158 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35591, posNoise = 6, negNoise = 5 17-03-17 22:35:29.158 -07 000000610 INF: Z Motor: After move to -0.168959, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 22:35:29.158 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms) 17-03-17 22:35:29.158 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 22:35:29.158 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 22:35:29.158 -07 000000459 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 22:35:29.158 -07 000000415 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 22:35:29.158 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-17 22:35:29.158 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 22:35:29.158 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms. 17-03-17 22:35:29.158 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-17 22:35:29.158 -07 000000593 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-17 22:35:29.158 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-17 22:35:29.158 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms. 17-03-17 22:35:29.158 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-17 22:35:29.168 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms. 17-03-17 22:35:29.168 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-17 22:35:29.168 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms. 17-03-17 22:35:29.168 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-17 22:35:29.178 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 12 ms. 17-03-17 22:35:29.178 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms. 17-03-17 22:35:29.178 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms. 17-03-17 22:35:29.178 -07 000000593 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms. 17-03-17 22:35:29.178 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 455 455 219 219 37086 150\n [Camera] 17-03-17 22:35:29.378 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-17 22:35:29.838 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 647 17-03-17 22:35:29.838 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 647 17-03-17 22:35:29.838 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 22:35:29.838 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 647 17-03-17 22:35:29.838 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 647 17-03-17 22:35:29.838 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 22:35:29.838 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 22:35:29.838 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start. 17-03-17 22:35:29.848 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 22:35:29.848 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 1406045800, 0x0, 418435064) start. 17-03-17 22:35:30.028 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37086 840 17-03-17 22:35:30.178 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning grn on 992 17-03-17 22:35:30.218 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 1406045800, 0x0, 418435064) end. Duration was 371 ms. 17-03-17 22:35:30.218 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms. 17-03-17 22:35:30.218 -07 000000482 INF: Camera: CopyActivePixFullImage start. 17-03-17 22:35:30.218 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 374 ms. 17-03-17 22:35:30.218 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 375 ms. 17-03-17 22:35:30.218 -07 000000551 INF: Camera: CopyActivePixFullImage start. 17-03-17 22:35:30.218 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms. 17-03-17 22:35:30.218 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms. 17-03-17 22:35:30.218 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms. 17-03-17 22:35:30.228 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms. 17-03-17 22:35:30.398 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1212 17-03-17 22:35:30.398 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1212 17-03-17 22:35:30.398 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 22:35:30.398 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1212 17-03-17 22:35:30.398 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1212 17-03-17 22:35:30.408 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 22:35:30.408 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 22:35:30.408 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 1441468064, 0x0, 391868352) start. 17-03-17 22:35:30.408 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 22:35:30.408 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start. 17-03-17 22:35:30.588 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP 1402 17-03-17 22:35:30.588 -07 000000415 INF: FPGA: Recv CAMDBLSNAP 17-03-17 22:35:30.588 -07 000000610 INF: FPGA: 'CAMDBLSNAP 455 455 219 219 37086 150' command took 2 ms to send, 1404 ms to get response, and 1409 ms overall 17-03-17 22:35:30.588 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880 17-03-17 22:35:30.588 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.20458984375, Z-Position -0.168967486348549. ------ 17-03-17 22:35:30.708 -07 000000486 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 22:35:30.708 -07 000000593 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.17566 mm 17-03-17 22:35:30.708 -07 000000593 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-17 22:35:30.718 -07 000000462 INF: FPGA: Recv FOCMRRCUR 17-03-17 22:35:30.718 -07 000000486 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall 17-03-17 22:35:30.718 -07 000000486 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror] 17-03-17 22:35:30.718 -07 000000541 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True) 17-03-17 22:35:30.718 -07 000000541 INF: Y Motor: Moving to 69.0426 mm, started at 68.2046 mm, delta = 0.8380 mm 17-03-17 22:35:30.718 -07 000000608 INF: Z Motor: Entering MoveAbsStepped (DAC = 38374, sync = True, waitForSettling = False) 17-03-17 22:35:30.718 -07 000000608 INF: Z Motor: Moving to -0.175665 mm, started at -0.168967 mm, distance = -6.70 um 17-03-17 22:35:30.728 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 22:35:30.728 -07 000000462 INF: FPGA: Recv YRDPOS 139683 17-03-17 22:35:30.738 -07 000000608 INF: FPGA: Xmit ZDACW 38374\n [Z Motor] 17-03-17 22:35:30.738 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 17 ms overall 17-03-17 22:35:30.738 -07 000000541 INF: Y Motor: Encoder = 139683 = motor step 109127.3 = 68.2046 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 22:35:30.738 -07 000000541 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-17 22:35:30.738 -07 000000541 INF: Y Motor: Moving 1341 steps-17 17-03-17 22:35:30.738 -07 000000415 INF: FPGA: Recv ZDACW 17-03-17 22:35:30.748 -07 000000608 INF: FPGA: 'ZDACW 38374' command took 0 ms to send, 0 ms to get response, and 27 ms overall 17-03-17 22:35:30.748 -07 000000608 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 22:35:30.748 -07 000000547 INF: FPGA: Recv ZDACR 38374 17-03-17 22:35:30.758 -07 000000541 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-17 22:35:30.758 -07 000000608 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 22:35:30.758 -07 000000608 INF: Z Motor: MoveAbsStepped took 37 ms (did NOT wait for settling yet)) 17-03-17 22:35:30.798 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 1441468064, 0x0, 391868352) end. Duration was 393 ms. 17-03-17 22:35:30.798 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms. 17-03-17 22:35:30.798 -07 000000627 INF: Camera: CopyActivePixFullImage start. 17-03-17 22:35:30.798 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 392 ms. 17-03-17 22:35:30.798 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms. 17-03-17 22:35:30.798 -07 000000459 INF: Camera: CopyActivePixFullImage start. 17-03-17 22:35:30.808 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-17 22:35:30.808 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms. 17-03-17 22:35:30.808 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-17 22:35:30.818 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms. 17-03-17 22:35:30.918 -07 000000458 INF: FPGA: Recv FOCMRRFOC 17-03-17 22:35:30.918 -07 000000486 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall 17-03-17 22:35:31.128 -07 000000576 INF: FPGA: Recv YMVTILE 17-03-17 22:35:31.128 -07 000000541 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall 17-03-17 22:35:31.168 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 22:35:31.178 -07 000000623 INF: FPGA: Recv YRDPOS 141367 17-03-17 22:35:31.178 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 4 ms to get response, and 6 ms overall 17-03-17 22:35:31.178 -07 000000541 INF: Y Motor: Encoder = 141367 = motor step 110443.0 = 69.0269 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 22:35:31.178 -07 000000541 INF: Y Motor: Position error before settling (table move) = -32 encoder counts (-0.016 mm) 17-03-17 22:35:31.178 -07 000000541 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.838 mm, average velocity = 2.111 mm/sec 17-03-17 22:35:31.988 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 22:35:31.988 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 64. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1026, R2=1057, Total=2083. Warn if over 250 bubbles per interval. 17-03-17 22:35:32.128 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 22:35:32.128 -07 000000459 INF: FPGA: Recv YRDPOS 141367 17-03-17 22:35:32.138 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:32.138 -07 000000541 INF: Y Motor: Encoder = 141367 = motor step 110443.0 = 69.0269 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 22:35:32.158 -07 000000541 INF: Y Motor: After move to 69.042610, error = -0.015755, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm 17-03-17 22:35:32.158 -07 000000541 INF: Y Motor: Position error after settling (table move) = -32 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm) 17-03-17 22:35:32.158 -07 000000541 INF: Y Motor: Moved to 69.0269 after 1443 ms (table move) 17-03-17 22:35:32.158 -07 000000593 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175665 mm (DAC = 38374) 17-03-17 22:35:32.158 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:32.168 -07 000000502 INF: FPGA: Recv ZSGSRD 36642 17-03-17 22:35:32.168 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall 17-03-17 22:35:32.168 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:32.168 -07 000000459 INF: FPGA: Recv ZSGSRD 36632 17-03-17 22:35:32.178 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall 17-03-17 22:35:32.178 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:32.178 -07 000000547 INF: FPGA: Recv ZSGSRD 36632 17-03-17 22:35:32.188 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:32.188 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:32.188 -07 000000462 INF: FPGA: Recv ZSGSRD 36634 17-03-17 22:35:32.198 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:32.198 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:32.198 -07 000000502 INF: FPGA: Recv ZSGSRD 36636 17-03-17 22:35:32.208 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:32.208 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:32.208 -07 000000480 INF: FPGA: Recv ZSGSRD 36633 17-03-17 22:35:32.218 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:32.218 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:32.218 -07 000000569 INF: FPGA: Recv ZSGSRD 36639 17-03-17 22:35:32.228 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:32.228 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:32.228 -07 000000486 INF: FPGA: Recv ZSGSRD 36632 17-03-17 22:35:32.238 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:32.238 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:32.238 -07 000000623 INF: FPGA: Recv ZSGSRD 36633 17-03-17 22:35:32.248 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:32.248 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:32.248 -07 000000415 INF: FPGA: Recv ZSGSRD 36638 17-03-17 22:35:32.258 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:32.258 -07 000000593 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 22:35:32.258 -07 000000486 INF: FPGA: Recv ZPIEZORD 32961 17-03-17 22:35:32.268 -07 000000593 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:32.268 -07 000000593 INF: Z Motor: Piezo is near 50.4 V (nominally 0 to 100 V), expect near 58.6 V, since DAC is at 5.855 V. Piezo Error = -8.1 V. 17-03-17 22:35:32.268 -07 000000593 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.7 um, Read 10 ADC samples: Avg = 36635 (-174.8 uncal um), Error = 0.9 uncal um, Median = 36634 (-174.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 36632 (-174.8 uncal um), Max = 36642 (-174.8 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um) 17-03-17 22:35:32.268 -07 000000593 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36635, posNoise = 7, negNoise = 3 17-03-17 22:35:32.268 -07 000000593 INF: Z Motor: After move to -0.175665, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 22:35:32.268 -07 000000593 INF: Z Motor: Settle wait time = 1446 ms, measure time = 102 ms (allowed 150 ms), total time = 1548 ms 17-03-17 22:35:32.268 -07 000000593 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms 17-03-17 22:35:32.318 -07 000000593 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1602 ms 17-03-17 22:35:32.318 -07 000000593 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-17 22:35:32.318 -07 000000486 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 65, FrontChillerTemperature: 3.970374, 17-03-17 22:35:32.318 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 22:35:32.318 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 22:35:32.328 -07 000000593 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 22:35:32.328 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger start. 17-03-17 22:35:32.328 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 22:35:32.328 -07 000000459 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 22:35:32.328 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms. 17-03-17 22:35:32.328 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start. 17-03-17 22:35:32.328 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms. 17-03-17 22:35:32.328 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start. 17-03-17 22:35:32.338 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms. 17-03-17 22:35:32.338 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms. 17-03-17 22:35:32.368 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera] 17-03-17 22:35:32.408 -07 000000502 INF: FPGA: Recv @CAMSNAP turning led on 40 17-03-17 22:35:32.608 -07 000000547 INF: FPGA: Recv @CAMSNAP img rdy 240 17-03-17 22:35:32.608 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240 17-03-17 22:35:32.608 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start. 17-03-17 22:35:32.608 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start. 17-03-17 22:35:32.648 -07 000000608 INF: FPGA: Recv @CAMSNAP 280 17-03-17 22:35:32.648 -07 000000415 INF: FPGA: Recv CAMSNAP 17-03-17 22:35:32.648 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 275 ms to get response, and 306 ms overall 17-03-17 22:35:32.728 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 115 ms. 17-03-17 22:35:32.728 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-17 22:35:32.728 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms. 17-03-17 22:35:32.728 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms. 17-03-17 22:35:32.748 -07 000000547 INF: Autofocus start 17-03-17 22:35:32.748 -07 000000547 INF: MeasureProfile start 17-03-17 22:35:32.748 -07 000000415 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 22:35:32.748 -07 000000576 INF: FPGA: Recv FOCMRRCUR 17-03-17 22:35:32.758 -07 000000415 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-17 22:35:32.758 -07 000000415 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror] 17-03-17 22:35:32.758 -07 000000547 INF: MeasureProfile done 17-03-17 22:35:32.758 -07 000000547 INF: X=0 Z correction [um]=-0.0713522 17-03-17 22:35:32.758 -07 000000547 INF: Autofocus finished 17-03-17 22:35:32.958 -07 000000551 INF: FPGA: Recv FOCMRRIMG 17-03-17 22:35:32.958 -07 000000415 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 202 ms overall 17-03-17 22:35:32.968 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02685546875, Z-position -0.175674363824548. ---------- 17-03-17 22:35:32.968 -07 000000610 INF: Cycle 65 Tile 12 Exposure Settings A 455 G 219 T 219 C 455 17-03-17 22:35:32.968 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36871, sync = True, waitForSettling = True) 17-03-17 22:35:32.968 -07 000000610 INF: Z Motor: Moving to -0.168785 mm, started at -0.175674 mm, distance = 6.89 um 17-03-17 22:35:32.968 -07 000000610 INF: FPGA: Xmit ZDACW 36871\n [Z Motor] 17-03-17 22:35:32.968 -07 000000480 INF: FPGA: Recv ZDACW 17-03-17 22:35:32.978 -07 000000610 INF: FPGA: 'ZDACW 36871' command took 0 ms to send, 0 ms to get response, and 7 ms overall 17-03-17 22:35:32.978 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 22:35:32.978 -07 000000486 INF: FPGA: Recv ZDACR 36871 17-03-17 22:35:32.988 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:32.988 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-17 22:35:33.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:33.138 -07 000000459 INF: FPGA: Recv ZSGSRD 35562 17-03-17 22:35:33.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:33.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:33.148 -07 000000569 INF: FPGA: Recv ZSGSRD 35569 17-03-17 22:35:33.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:33.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:33.158 -07 000000608 INF: FPGA: Recv ZSGSRD 35560 17-03-17 22:35:33.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:33.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:33.168 -07 000000462 INF: FPGA: Recv ZSGSRD 35567 17-03-17 22:35:33.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:33.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:33.178 -07 000000627 INF: FPGA: Recv ZSGSRD 35564 17-03-17 22:35:33.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:33.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:33.188 -07 000000569 INF: FPGA: Recv ZSGSRD 35572 17-03-17 22:35:33.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:33.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:33.198 -07 000000576 INF: FPGA: Recv ZSGSRD 35561 17-03-17 22:35:33.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:33.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:33.208 -07 000000551 INF: FPGA: Recv ZSGSRD 35560 17-03-17 22:35:33.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:33.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:33.218 -07 000000547 INF: FPGA: Recv ZSGSRD 35564 17-03-17 22:35:33.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:33.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:33.228 -07 000000415 INF: FPGA: Recv ZSGSRD 35570 17-03-17 22:35:33.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall 17-03-17 22:35:33.238 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 22:35:33.238 -07 000000480 INF: FPGA: Recv ZPIEZORD 31543 17-03-17 22:35:33.248 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:33.248 -07 000000610 INF: Z Motor: Piezo is near 47.4 V (nominally 0 to 100 V), expect near 56.3 V, since DAC is at 5.626 V. Piezo Error = -8.9 V. 17-03-17 22:35:33.248 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.8 um, Read 10 ADC samples: Avg = 35565 (-167.9 uncal um), Error = 0.9 uncal um, Median = 35564 (-167.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35560 (-167.9 uncal um), Max = 35572 (-168.0 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um) 17-03-17 22:35:33.248 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35565, posNoise = 7, negNoise = 5 17-03-17 22:35:33.248 -07 000000610 INF: Z Motor: After move to -0.168785, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 22:35:33.248 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms) 17-03-17 22:35:33.248 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 22:35:33.248 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 22:35:33.248 -07 000000593 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 22:35:33.248 -07 000000415 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-17 22:35:33.248 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 22:35:33.248 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 22:35:33.248 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-17 22:35:33.248 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-17 22:35:33.248 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms. 17-03-17 22:35:33.248 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-17 22:35:33.248 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms. 17-03-17 22:35:33.248 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-17 22:35:33.248 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms. 17-03-17 22:35:33.248 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-17 22:35:33.258 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 5 ms. 17-03-17 22:35:33.258 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-17 22:35:33.268 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms. 17-03-17 22:35:33.268 -07 000000415 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms. 17-03-17 22:35:33.268 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms. 17-03-17 22:35:33.268 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms. 17-03-17 22:35:33.278 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 455 455 219 219 37047 150\n [Camera] 17-03-17 22:35:33.468 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-17 22:35:33.928 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 647 17-03-17 22:35:33.928 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 647 17-03-17 22:35:33.928 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 22:35:33.928 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 647 17-03-17 22:35:33.928 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 647 17-03-17 22:35:33.928 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 22:35:33.938 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 22:35:33.938 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start. 17-03-17 22:35:33.938 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 22:35:33.938 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 1406045800, 0x0, 418435064) start. 17-03-17 22:35:34.118 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37047 840 17-03-17 22:35:34.268 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP turning grn on 990 17-03-17 22:35:34.328 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 394 ms. 17-03-17 22:35:34.328 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms. 17-03-17 22:35:34.328 -07 000000458 INF: Camera: CopyActivePixFullImage start. 17-03-17 22:35:34.328 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 1406045800, 0x0, 418435064) end. Duration was 394 ms. 17-03-17 22:35:34.328 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms. 17-03-17 22:35:34.328 -07 000000459 INF: Camera: CopyActivePixFullImage start. 17-03-17 22:35:34.328 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 22:35:34.328 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms. 17-03-17 22:35:34.338 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 22:35:34.338 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms. 17-03-17 22:35:34.488 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1209 17-03-17 22:35:34.488 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1209 17-03-17 22:35:34.488 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 22:35:34.498 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1209 17-03-17 22:35:34.498 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1209 17-03-17 22:35:34.498 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 22:35:34.498 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 22:35:34.498 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start. 17-03-17 22:35:34.498 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 22:35:34.498 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 1130172064, 0x0, 391868352) start. 17-03-17 22:35:34.678 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP 1402 17-03-17 22:35:34.678 -07 000000576 INF: FPGA: Recv CAMDBLSNAP 17-03-17 22:35:34.678 -07 000000610 INF: FPGA: 'CAMDBLSNAP 455 455 219 219 37047 150' command took 2 ms to send, 1399 ms to get response, and 1409 ms overall 17-03-17 22:35:34.688 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880 17-03-17 22:35:34.688 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.02685546875, Z-Position -0.168800456832863. ------ 17-03-17 22:35:34.688 -07 000000623 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 22:35:34.688 -07 000000482 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.17506 mm 17-03-17 22:35:34.688 -07 000000482 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-17 22:35:34.688 -07 000000569 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True) 17-03-17 22:35:34.688 -07 000000569 INF: Y Motor: Moving to 69.8726 mm, started at 69.0269 mm, delta = 0.8458 mm 17-03-17 22:35:34.688 -07 000000480 INF: Z Motor: Entering MoveAbsStepped (DAC = 38242, sync = True, waitForSettling = False) 17-03-17 22:35:34.688 -07 000000480 INF: Z Motor: Moving to -0.175061 mm, started at -0.168800 mm, distance = -6.26 um 17-03-17 22:35:34.688 -07 000000382 INF: FPGA: Recv FOCMRRCUR 17-03-17 22:35:34.698 -07 000000623 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall 17-03-17 22:35:34.698 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 22:35:34.698 -07 000000486 INF: FPGA: Recv YRDPOS 141368 17-03-17 22:35:34.708 -07 000000480 INF: FPGA: Xmit ZDACW 38242\n [Z Motor] 17-03-17 22:35:34.708 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall 17-03-17 22:35:34.708 -07 000000569 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 22:35:34.708 -07 000000576 INF: FPGA: Recv ZDACW 17-03-17 22:35:34.708 -07 000000569 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-17 22:35:34.708 -07 000000569 INF: Y Motor: Moving 1352 steps-32 17-03-17 22:35:34.718 -07 000000623 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror] 17-03-17 22:35:34.718 -07 000000480 INF: FPGA: 'ZDACW 38242' command took 0 ms to send, 0 ms to get response, and 22 ms overall 17-03-17 22:35:34.728 -07 000000569 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-17 22:35:34.738 -07 000000480 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 22:35:34.738 -07 000000541 INF: FPGA: Recv ZDACR 38242 17-03-17 22:35:34.748 -07 000000480 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall 17-03-17 22:35:34.748 -07 000000480 INF: Z Motor: MoveAbsStepped took 53 ms (did NOT wait for settling yet)) 17-03-17 22:35:34.898 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 1130172064, 0x0, 391868352) end. Duration was 394 ms. 17-03-17 22:35:34.898 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms. 17-03-17 22:35:34.898 -07 000000593 INF: Camera: CopyActivePixFullImage start. 17-03-17 22:35:34.898 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 399 ms. 17-03-17 22:35:34.898 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms. 17-03-17 22:35:34.898 -07 000000547 INF: Camera: CopyActivePixFullImage start. 17-03-17 22:35:34.898 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-17 22:35:34.898 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms. 17-03-17 22:35:34.898 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-17 22:35:34.908 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms. 17-03-17 22:35:34.918 -07 000000627 INF: FPGA: Recv FOCMRRFOC 17-03-17 22:35:34.918 -07 000000623 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall 17-03-17 22:35:35.098 -07 000000480 INF: FPGA: Recv YMVTILE 17-03-17 22:35:35.098 -07 000000569 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 392 ms overall 17-03-17 22:35:35.138 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 22:35:35.148 -07 000000486 INF: FPGA: Recv YRDPOS 143079 17-03-17 22:35:35.148 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall 17-03-17 22:35:35.148 -07 000000569 INF: Y Motor: Encoder = 143079 = motor step 111780.5 = 69.8628 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 22:35:35.148 -07 000000569 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm) 17-03-17 22:35:35.148 -07 000000569 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 392 ms, distance = 0.846 mm, average velocity = 2.158 mm/sec 17-03-17 22:35:36.098 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 22:35:36.098 -07 000000458 INF: FPGA: Recv YRDPOS 143079 17-03-17 22:35:36.108 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:36.108 -07 000000569 INF: Y Motor: Encoder = 143079 = motor step 111780.5 = 69.8628 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 22:35:36.128 -07 000000569 INF: Y Motor: After move to 69.872612, error = -0.009819, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm 17-03-17 22:35:36.128 -07 000000569 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm) 17-03-17 22:35:36.128 -07 000000569 INF: Y Motor: Moved to 69.8628 after 1439 ms (table move) 17-03-17 22:35:36.128 -07 000000482 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175061 mm (DAC = 38242) 17-03-17 22:35:36.128 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:36.138 -07 000000382 INF: FPGA: Recv ZSGSRD 36553 17-03-17 22:35:36.138 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall 17-03-17 22:35:36.138 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:36.138 -07 000000593 INF: FPGA: Recv ZSGSRD 36533 17-03-17 22:35:36.148 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall 17-03-17 22:35:36.148 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:36.148 -07 000000627 INF: FPGA: Recv ZSGSRD 36535 17-03-17 22:35:36.158 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:36.158 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:36.158 -07 000000551 INF: FPGA: Recv ZSGSRD 36552 17-03-17 22:35:36.168 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:36.168 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:36.168 -07 000000551 INF: FPGA: Recv ZSGSRD 36540 17-03-17 22:35:36.178 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall 17-03-17 22:35:36.178 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:36.178 -07 000000486 INF: FPGA: Recv ZSGSRD 36539 17-03-17 22:35:36.188 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:36.188 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:36.188 -07 000000541 INF: FPGA: Recv ZSGSRD 36540 17-03-17 22:35:36.198 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:36.198 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:36.198 -07 000000627 INF: FPGA: Recv ZSGSRD 36542 17-03-17 22:35:36.208 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:36.208 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:36.208 -07 000000608 INF: FPGA: Recv ZSGSRD 36534 17-03-17 22:35:36.218 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:36.218 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:36.218 -07 000000486 INF: FPGA: Recv ZSGSRD 36540 17-03-17 22:35:36.228 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:36.228 -07 000000482 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 22:35:36.228 -07 000000547 INF: FPGA: Recv ZPIEZORD 32829 17-03-17 22:35:36.238 -07 000000482 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:36.238 -07 000000482 INF: Z Motor: Piezo is near 50.1 V (nominally 0 to 100 V), expect near 58.4 V, since DAC is at 5.835 V. Piezo Error = -8.2 V. 17-03-17 22:35:36.238 -07 000000482 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.1 um, Read 10 ADC samples: Avg = 36541 (-174.2 uncal um), Error = 0.9 uncal um, Median = 36540 (-174.2 uncal um), StdDev = 7 (0.0 uncal um), Range = 20 (0.1 uncal um), Min = 36533 (-174.1 uncal um), Max = 36553 (-174.3 uncal um), Pos Noise = 12 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um) 17-03-17 22:35:36.238 -07 000000482 INF: Z Motor: ADC noise = 12, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36541, posNoise = 12, negNoise = 8 17-03-17 22:35:36.238 -07 000000482 INF: Z Motor: After move to -0.175061, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 22:35:36.238 -07 000000482 INF: Z Motor: Settle wait time = 1441 ms, measure time = 102 ms (allowed 150 ms), total time = 1543 ms 17-03-17 22:35:36.238 -07 000000482 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms 17-03-17 22:35:36.288 -07 000000482 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1595 ms 17-03-17 22:35:36.288 -07 000000482 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-17 22:35:36.288 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 22:35:36.288 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 22:35:36.288 -07 000000486 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 22:35:36.288 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 22:35:36.288 -07 000000459 INF: Disarm and arm camera sensor 0: ROITrigger start. 17-03-17 22:35:36.288 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 22:35:36.288 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms. 17-03-17 22:35:36.288 -07 000000459 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start. 17-03-17 22:35:36.298 -07 000000459 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms. 17-03-17 22:35:36.298 -07 000000459 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start. 17-03-17 22:35:36.308 -07 000000459 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms. 17-03-17 22:35:36.308 -07 000000459 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms. 17-03-17 22:35:36.308 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera] 17-03-17 22:35:36.358 -07 000000459 INF: FPGA: Recv @CAMSNAP turning led on 40 17-03-17 22:35:36.558 -07 000000415 INF: FPGA: Recv @CAMSNAP img rdy 240 17-03-17 22:35:36.558 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240 17-03-17 22:35:36.558 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start. 17-03-17 22:35:36.558 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1476890328, 0x0, 559484976) start. 17-03-17 22:35:36.588 -07 000000459 INF: FPGA: Recv @CAMSNAP 280 17-03-17 22:35:36.598 -07 000000541 INF: FPGA: Recv CAMSNAP 17-03-17 22:35:36.598 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 284 ms overall 17-03-17 22:35:36.678 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1476890328, 0x0, 559484976) end. Duration was 122 ms. 17-03-17 22:35:36.678 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-17 22:35:36.678 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms. 17-03-17 22:35:36.678 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 125 ms. 17-03-17 22:35:36.698 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 22:35:36.698 -07 000000569 INF: Autofocus start 17-03-17 22:35:36.698 -07 000000569 INF: MeasureProfile start 17-03-17 22:35:36.698 -07 000000627 INF: FPGA: Recv FOCMRRCUR 17-03-17 22:35:36.708 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall 17-03-17 22:35:36.708 -07 000000608 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror] 17-03-17 22:35:36.718 -07 000000569 INF: MeasureProfile done 17-03-17 22:35:36.718 -07 000000569 INF: X=16 Z correction [um]=0.01042744 17-03-17 22:35:36.718 -07 000000569 INF: Autofocus finished 17-03-17 22:35:36.908 -07 000000627 INF: FPGA: Recv FOCMRRIMG 17-03-17 22:35:36.908 -07 000000608 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall 17-03-17 22:35:36.908 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86279296875, Z-position -0.175070487883222. ---------- 17-03-17 22:35:36.908 -07 000000610 INF: Cycle 65 Tile 13 Exposure Settings A 455 G 219 T 219 C 455 17-03-17 22:35:36.908 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36757, sync = True, waitForSettling = True) 17-03-17 22:35:36.908 -07 000000610 INF: Z Motor: Moving to -0.168263 mm, started at -0.175070 mm, distance = 6.81 um 17-03-17 22:35:36.918 -07 000000610 INF: FPGA: Xmit ZDACW 36757\n [Z Motor] 17-03-17 22:35:36.918 -07 000000547 INF: FPGA: Recv ZDACW 17-03-17 22:35:36.928 -07 000000610 INF: FPGA: 'ZDACW 36757' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 22:35:36.928 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 22:35:36.928 -07 000000462 INF: FPGA: Recv ZDACR 36757 17-03-17 22:35:36.938 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:36.938 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-17 22:35:36.988 -07 000000551 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 22:35:36.988 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 64. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1026, R2=1057, Total=2083. Warn if over 250 bubbles per interval. 17-03-17 22:35:37.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:37.088 -07 000000458 INF: FPGA: Recv ZSGSRD 35481 17-03-17 22:35:37.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:37.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:37.098 -07 000000462 INF: FPGA: Recv ZSGSRD 35482 17-03-17 22:35:37.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:37.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:37.108 -07 000000382 INF: FPGA: Recv ZSGSRD 35490 17-03-17 22:35:37.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:37.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:37.118 -07 000000415 INF: FPGA: Recv ZSGSRD 35478 17-03-17 22:35:37.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:37.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:37.128 -07 000000502 INF: FPGA: Recv ZSGSRD 35484 17-03-17 22:35:37.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:37.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:37.138 -07 000000569 INF: FPGA: Recv ZSGSRD 35484 17-03-17 22:35:37.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:37.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:37.148 -07 000000480 INF: FPGA: Recv ZSGSRD 35482 17-03-17 22:35:37.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:37.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:37.158 -07 000000627 INF: FPGA: Recv ZSGSRD 35485 17-03-17 22:35:37.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:37.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:37.168 -07 000000415 INF: FPGA: Recv ZSGSRD 35473 17-03-17 22:35:37.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:37.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:37.178 -07 000000502 INF: FPGA: Recv ZSGSRD 35483 17-03-17 22:35:37.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:37.188 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 22:35:37.188 -07 000000547 INF: FPGA: Recv ZPIEZORD 31435 17-03-17 22:35:37.198 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:37.198 -07 000000610 INF: Z Motor: Piezo is near 47.2 V (nominally 0 to 100 V), expect near 56.1 V, since DAC is at 5.609 V. Piezo Error = -8.9 V. 17-03-17 22:35:37.198 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.3 um, Read 10 ADC samples: Avg = 35482 (-167.4 uncal um), Error = 0.9 uncal um, Median = 35482 (-167.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 35473 (-167.3 uncal um), Max = 35490 (-167.4 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um) 17-03-17 22:35:37.198 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35482, posNoise = 8, negNoise = 9 17-03-17 22:35:37.198 -07 000000610 INF: Z Motor: After move to -0.168263, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 22:35:37.198 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms) 17-03-17 22:35:37.198 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 22:35:37.198 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 22:35:37.198 -07 000000458 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 22:35:37.198 -07 000000623 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-17 22:35:37.198 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-17 22:35:37.198 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-17 22:35:37.198 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 22:35:37.198 -07 000000551 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 22:35:37.198 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms. 17-03-17 22:35:37.198 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-17 22:35:37.198 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms. 17-03-17 22:35:37.198 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-17 22:35:37.208 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms. 17-03-17 22:35:37.208 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-17 22:35:37.208 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms. 17-03-17 22:35:37.208 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-17 22:35:37.208 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms. 17-03-17 22:35:37.208 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms. 17-03-17 22:35:37.218 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms. 17-03-17 22:35:37.218 -07 000000623 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms. 17-03-17 22:35:37.218 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 455 455 219 219 36933 150\n [Camera] 17-03-17 22:35:37.418 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-17 22:35:37.688 -07 000000486 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 65, FrontChillerTemperature: 3.989471, 17-03-17 22:35:37.868 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 647 17-03-17 22:35:37.868 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 647 17-03-17 22:35:37.868 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 22:35:37.878 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 22:35:37.878 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start. 17-03-17 22:35:37.878 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 647 17-03-17 22:35:37.878 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 647 17-03-17 22:35:37.878 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 22:35:37.878 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 22:35:37.878 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start. 17-03-17 22:35:38.068 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36933 840 17-03-17 22:35:38.218 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning grn on 990 17-03-17 22:35:38.258 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 381 ms. 17-03-17 22:35:38.258 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms. 17-03-17 22:35:38.258 -07 000000502 INF: Camera: CopyActivePixFullImage start. 17-03-17 22:35:38.258 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 379 ms. 17-03-17 22:35:38.258 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms. 17-03-17 22:35:38.258 -07 000000459 INF: Camera: CopyActivePixFullImage start. 17-03-17 22:35:38.258 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 22:35:38.258 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms. 17-03-17 22:35:38.258 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 22:35:38.268 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms. 17-03-17 22:35:38.438 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1209 17-03-17 22:35:38.438 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1209 17-03-17 22:35:38.438 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 22:35:38.438 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 22:35:38.438 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start. 17-03-17 22:35:38.438 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1209 17-03-17 22:35:38.438 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1209 17-03-17 22:35:38.438 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 22:35:38.438 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 22:35:38.438 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start. 17-03-17 22:35:38.628 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP 1402 17-03-17 22:35:38.628 -07 000000415 INF: FPGA: Recv CAMDBLSNAP 17-03-17 22:35:38.628 -07 000000610 INF: FPGA: 'CAMDBLSNAP 455 455 219 219 36933 150' command took 2 ms to send, 1403 ms to get response, and 1408 ms overall 17-03-17 22:35:38.628 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880 17-03-17 22:35:38.628 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.86279296875, Z-Position -0.168267247225097. ------ 17-03-17 22:35:38.628 -07 000000608 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.17466 mm 17-03-17 22:35:38.628 -07 000000608 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-17 22:35:38.628 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 22:35:38.748 -07 000000482 INF: FPGA: Recv FOCMRRCUR 17-03-17 22:35:38.748 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 116 ms overall 17-03-17 22:35:38.748 -07 000000576 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror] 17-03-17 22:35:38.748 -07 000000569 INF: Z Motor: Entering MoveAbsStepped (DAC = 38154, sync = True, waitForSettling = False) 17-03-17 22:35:38.748 -07 000000569 INF: Z Motor: Moving to -0.174658 mm, started at -0.168267 mm, distance = -6.39 um 17-03-17 22:35:38.748 -07 000000541 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True) 17-03-17 22:35:38.748 -07 000000541 INF: Y Motor: Moving to 70.7026 mm, started at 69.8628 mm, delta = 0.8398 mm 17-03-17 22:35:38.758 -07 000000569 INF: FPGA: Xmit ZDACW 38154\n [Z Motor] 17-03-17 22:35:38.758 -07 000000459 INF: FPGA: Recv ZDACW 17-03-17 22:35:38.768 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 22:35:38.768 -07 000000569 INF: FPGA: 'ZDACW 38154' command took 0 ms to send, 0 ms to get response, and 12 ms overall 17-03-17 22:35:38.768 -07 000000502 INF: FPGA: Recv YRDPOS 143080 17-03-17 22:35:38.778 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 22 ms overall 17-03-17 22:35:38.778 -07 000000541 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 22:35:38.778 -07 000000569 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 22:35:38.778 -07 000000541 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-17 22:35:38.778 -07 000000541 INF: Y Motor: Moving 1343 steps-20 17-03-17 22:35:38.778 -07 000000459 INF: FPGA: Recv ZDACR 38154 17-03-17 22:35:38.788 -07 000000569 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall 17-03-17 22:35:38.788 -07 000000569 INF: Z Motor: MoveAbsStepped took 32 ms (did NOT wait for settling yet)) 17-03-17 22:35:38.788 -07 000000541 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-17 22:35:38.818 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 386 ms. 17-03-17 22:35:38.818 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms. 17-03-17 22:35:38.818 -07 000000458 INF: Camera: CopyActivePixFullImage start. 17-03-17 22:35:38.828 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 384 ms. 17-03-17 22:35:38.828 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms. 17-03-17 22:35:38.828 -07 000000551 INF: Camera: CopyActivePixFullImage start. 17-03-17 22:35:38.828 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 22:35:38.828 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms. 17-03-17 22:35:38.828 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 394 ms. 17-03-17 22:35:38.838 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms. 17-03-17 22:35:38.948 -07 000000482 INF: FPGA: Recv FOCMRRFOC 17-03-17 22:35:38.948 -07 000000576 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 198 ms to get response, and 202 ms overall 17-03-17 22:35:39.158 -07 000000502 INF: FPGA: Recv YMVTILE 17-03-17 22:35:39.158 -07 000000541 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 384 ms overall 17-03-17 22:35:39.198 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 22:35:39.208 -07 000000480 INF: FPGA: Recv YRDPOS 144769 17-03-17 22:35:39.208 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall 17-03-17 22:35:39.208 -07 000000541 INF: Y Motor: Encoder = 144769 = motor step 113100.8 = 70.6880 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 22:35:39.208 -07 000000541 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm) 17-03-17 22:35:39.208 -07 000000541 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 385 ms, distance = 0.840 mm, average velocity = 2.181 mm/sec 17-03-17 22:35:40.158 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 22:35:40.158 -07 000000480 INF: FPGA: Recv YRDPOS 144769 17-03-17 22:35:40.168 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:40.168 -07 000000541 INF: Y Motor: Encoder = 144769 = motor step 113100.8 = 70.6880 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 22:35:40.188 -07 000000541 INF: Y Motor: After move to 70.702606, error = -0.014618, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm 17-03-17 22:35:40.188 -07 000000541 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm) 17-03-17 22:35:40.188 -07 000000541 INF: Y Motor: Moved to 70.6880 after 1438 ms (table move) 17-03-17 22:35:40.198 -07 000000608 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174658 mm (DAC = 38154) 17-03-17 22:35:40.198 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:40.198 -07 000000459 INF: FPGA: Recv ZSGSRD 36477 17-03-17 22:35:40.208 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:40.208 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:40.208 -07 000000462 INF: FPGA: Recv ZSGSRD 36482 17-03-17 22:35:40.218 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:40.218 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:40.218 -07 000000551 INF: FPGA: Recv ZSGSRD 36481 17-03-17 22:35:40.228 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:40.228 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:40.228 -07 000000382 INF: FPGA: Recv ZSGSRD 36477 17-03-17 22:35:40.238 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:40.238 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:40.238 -07 000000482 INF: FPGA: Recv ZSGSRD 36471 17-03-17 22:35:40.248 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:40.248 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:40.248 -07 000000576 INF: FPGA: Recv ZSGSRD 36475 17-03-17 22:35:40.258 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:40.258 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:40.258 -07 000000486 INF: FPGA: Recv ZSGSRD 36475 17-03-17 22:35:40.268 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:40.268 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:40.268 -07 000000480 INF: FPGA: Recv ZSGSRD 36473 17-03-17 22:35:40.278 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:40.278 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:40.278 -07 000000482 INF: FPGA: Recv ZSGSRD 36472 17-03-17 22:35:40.288 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:40.288 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:40.288 -07 000000502 INF: FPGA: Recv ZSGSRD 36482 17-03-17 22:35:40.298 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:40.298 -07 000000608 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 22:35:40.298 -07 000000593 INF: FPGA: Recv ZPIEZORD 32757 17-03-17 22:35:40.308 -07 000000608 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:40.308 -07 000000608 INF: Z Motor: Piezo is near 50.0 V (nominally 0 to 100 V), expect near 58.2 V, since DAC is at 5.822 V. Piezo Error = -8.2 V. 17-03-17 22:35:40.308 -07 000000608 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.7 um, Read 10 ADC samples: Avg = 36476 (-173.8 uncal um), Error = 0.9 uncal um, Median = 36476 (-173.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36471 (-173.7 uncal um), Max = 36482 (-173.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um) 17-03-17 22:35:40.308 -07 000000608 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36476, posNoise = 6, negNoise = 5 17-03-17 22:35:40.308 -07 000000608 INF: Z Motor: After move to -0.174658, error = 0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 22:35:40.308 -07 000000608 INF: Z Motor: Settle wait time = 1443 ms, measure time = 110 ms (allowed 150 ms), total time = 1553 ms 17-03-17 22:35:40.308 -07 000000608 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms 17-03-17 22:35:40.348 -07 000000608 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1710 ms 17-03-17 22:35:40.348 -07 000000608 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-17 22:35:40.348 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 22:35:40.348 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 22:35:40.348 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 22:35:40.348 -07 000000541 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 22:35:40.348 -07 000000482 INF: Disarm and arm camera sensor 0: ROITrigger start. 17-03-17 22:35:40.348 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 22:35:40.348 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms. 17-03-17 22:35:40.348 -07 000000482 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start. 17-03-17 22:35:40.358 -07 000000482 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms. 17-03-17 22:35:40.358 -07 000000482 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start. 17-03-17 22:35:40.358 -07 000000482 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms. 17-03-17 22:35:40.358 -07 000000482 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms. 17-03-17 22:35:40.368 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera] 17-03-17 22:35:40.408 -07 000000482 INF: FPGA: Recv @CAMSNAP turning led on 40 17-03-17 22:35:40.608 -07 000000569 INF: FPGA: Recv @CAMSNAP img rdy 240 17-03-17 22:35:40.608 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240 17-03-17 22:35:40.608 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start. 17-03-17 22:35:40.608 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start. 17-03-17 22:35:40.648 -07 000000462 INF: FPGA: Recv @CAMSNAP 280 17-03-17 22:35:40.648 -07 000000593 INF: FPGA: Recv CAMSNAP 17-03-17 22:35:40.648 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 284 ms overall 17-03-17 22:35:40.728 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms. 17-03-17 22:35:40.728 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-17 22:35:40.728 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms. 17-03-17 22:35:40.728 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 116 ms. 17-03-17 22:35:40.748 -07 000000459 INF: Autofocus start 17-03-17 22:35:40.748 -07 000000459 INF: MeasureProfile start 17-03-17 22:35:40.748 -07 000000551 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 22:35:40.758 -07 000000593 INF: FPGA: Recv FOCMRRCUR 17-03-17 22:35:40.758 -07 000000551 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall 17-03-17 22:35:40.758 -07 000000551 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror] 17-03-17 22:35:40.768 -07 000000459 INF: MeasureProfile done 17-03-17 22:35:40.768 -07 000000459 INF: X=48 Z correction [um]=0.1739867 17-03-17 22:35:40.768 -07 000000459 INF: Autofocus finished 17-03-17 22:35:40.958 -07 000000627 INF: FPGA: Recv FOCMRRIMG 17-03-17 22:35:40.958 -07 000000551 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 202 ms overall 17-03-17 22:35:40.968 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.68798828125, Z-position -0.174652914094008. ---------- 17-03-17 22:35:40.968 -07 000000610 INF: Cycle 65 Tile 14 Exposure Settings A 455 G 219 T 219 C 455 17-03-17 22:35:40.968 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36705, sync = True, waitForSettling = True) 17-03-17 22:35:40.968 -07 000000610 INF: Z Motor: Moving to -0.168025 mm, started at -0.174653 mm, distance = 6.63 um 17-03-17 22:35:40.968 -07 000000610 INF: FPGA: Xmit ZDACW 36705\n [Z Motor] 17-03-17 22:35:40.968 -07 000000462 INF: FPGA: Recv ZDACW 17-03-17 22:35:40.978 -07 000000610 INF: FPGA: 'ZDACW 36705' command took 0 ms to send, 0 ms to get response, and 7 ms overall 17-03-17 22:35:40.978 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 22:35:40.978 -07 000000576 INF: FPGA: Recv ZDACR 36705 17-03-17 22:35:40.988 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:40.988 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-17 22:35:41.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:41.138 -07 000000415 INF: FPGA: Recv ZSGSRD 35453 17-03-17 22:35:41.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 22:35:41.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:41.148 -07 000000623 INF: FPGA: Recv ZSGSRD 35440 17-03-17 22:35:41.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:41.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:41.158 -07 000000541 INF: FPGA: Recv ZSGSRD 35448 17-03-17 22:35:41.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:41.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:41.168 -07 000000462 INF: FPGA: Recv ZSGSRD 35448 17-03-17 22:35:41.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:41.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:41.178 -07 000000569 INF: FPGA: Recv ZSGSRD 35447 17-03-17 22:35:41.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:41.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:41.188 -07 000000502 INF: FPGA: Recv ZSGSRD 35451 17-03-17 22:35:41.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:41.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:41.198 -07 000000623 INF: FPGA: Recv ZSGSRD 35448 17-03-17 22:35:41.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:41.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:41.208 -07 000000551 INF: FPGA: Recv ZSGSRD 35447 17-03-17 22:35:41.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:41.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:41.218 -07 000000480 INF: FPGA: Recv ZSGSRD 35448 17-03-17 22:35:41.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:41.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:41.228 -07 000000627 INF: FPGA: Recv ZSGSRD 35446 17-03-17 22:35:41.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall 17-03-17 22:35:41.238 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 22:35:41.238 -07 000000415 INF: FPGA: Recv ZPIEZORD 31388 17-03-17 22:35:41.288 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 46 ms to get response, and 56 ms overall 17-03-17 22:35:41.298 -07 000000610 INF: Z Motor: Piezo is near 47.1 V (nominally 0 to 100 V), expect near 56.0 V, since DAC is at 5.601 V. Piezo Error = -9.0 V. 17-03-17 22:35:41.298 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.0 um, Read 10 ADC samples: Avg = 35448 (-167.2 uncal um), Error = 0.8 uncal um, Median = 35448 (-167.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35440 (-167.1 uncal um), Max = 35453 (-167.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um) 17-03-17 22:35:41.298 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35448, posNoise = 5, negNoise = 8 17-03-17 22:35:41.298 -07 000000610 INF: Z Motor: After move to -0.168025, error = -0.000024, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 22:35:41.298 -07 000000610 INF: Z Motor: MoveAbsStepped took 330 ms) 17-03-17 22:35:41.298 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 22:35:41.298 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 22:35:41.298 -07 000000458 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 22:35:41.298 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-17 22:35:41.298 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-17 22:35:41.298 -07 000000459 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 22:35:41.298 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-17 22:35:41.298 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 22:35:41.298 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms. 17-03-17 22:35:41.298 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-17 22:35:41.308 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 22:35:41.308 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-17 22:35:41.308 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms. 17-03-17 22:35:41.308 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-17 22:35:41.308 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms. 17-03-17 22:35:41.308 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-17 22:35:41.318 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms. 17-03-17 22:35:41.318 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms. 17-03-17 22:35:41.318 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms. 17-03-17 22:35:41.318 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms. 17-03-17 22:35:41.318 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 455 455 219 219 36882 150\n [Camera] 17-03-17 22:35:41.518 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-17 22:35:41.978 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 647 17-03-17 22:35:41.978 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 647 17-03-17 22:35:41.978 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 22:35:41.978 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 647 17-03-17 22:35:41.978 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 22:35:41.978 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start. 17-03-17 22:35:41.978 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 647 17-03-17 22:35:41.978 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 22:35:41.988 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 22:35:41.988 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1406045800, 0x0, 418435064) start. 17-03-17 22:35:41.988 -07 000000608 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 22:35:41.988 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 64. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1026, R2=1057, Total=2083. Warn if over 250 bubbles per interval. 17-03-17 22:35:42.168 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36882 840 17-03-17 22:35:42.318 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP turning grn on 990 17-03-17 22:35:42.378 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 395 ms. 17-03-17 22:35:42.378 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms. 17-03-17 22:35:42.378 -07 000000593 INF: Camera: CopyActivePixFullImage start. 17-03-17 22:35:42.378 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1406045800, 0x0, 418435064) end. Duration was 394 ms. 17-03-17 22:35:42.378 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms. 17-03-17 22:35:42.378 -07 000000462 INF: Camera: CopyActivePixFullImage start. 17-03-17 22:35:42.378 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 22:35:42.378 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms. 17-03-17 22:35:42.388 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 22:35:42.388 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms. 17-03-17 22:35:42.538 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1209 17-03-17 22:35:42.538 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1209 17-03-17 22:35:42.538 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 22:35:42.538 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1209 17-03-17 22:35:42.538 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1209 17-03-17 22:35:42.538 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 22:35:42.548 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 22:35:42.548 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1441468064, 0x0, 391868352) start. 17-03-17 22:35:42.548 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 22:35:42.548 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start. 17-03-17 22:35:42.728 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP 1401 17-03-17 22:35:42.728 -07 000000623 INF: FPGA: Recv CAMDBLSNAP 17-03-17 22:35:42.728 -07 000000610 INF: FPGA: 'CAMDBLSNAP 455 455 219 219 36882 150' command took 2 ms to send, 1405 ms to get response, and 1409 ms overall 17-03-17 22:35:42.728 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880 17-03-17 22:35:42.728 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.68798828125, Z-Position -0.168048824012277. ------ 17-03-17 22:35:42.848 -07 000000608 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.17473 mm 17-03-17 22:35:42.848 -07 000000608 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-17 22:35:42.848 -07 000000551 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 22:35:42.858 -07 000000459 INF: FPGA: Recv FOCMRRCUR 17-03-17 22:35:42.858 -07 000000551 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall 17-03-17 22:35:42.858 -07 000000551 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror] 17-03-17 22:35:42.858 -07 000000541 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True) 17-03-17 22:35:42.858 -07 000000541 INF: Y Motor: Moving to 71.5326 mm, started at 70.6880 mm, delta = 0.8446 mm 17-03-17 22:35:42.858 -07 000000382 INF: Z Motor: Entering MoveAbsStepped (DAC = 38170, sync = True, waitForSettling = False) 17-03-17 22:35:42.858 -07 000000382 INF: Z Motor: Moving to -0.174731 mm, started at -0.168049 mm, distance = -6.68 um 17-03-17 22:35:42.868 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 22:35:42.868 -07 000000623 INF: FPGA: Recv YRDPOS 144770 17-03-17 22:35:42.878 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 17 ms overall 17-03-17 22:35:42.878 -07 000000382 INF: FPGA: Xmit ZDACW 38170\n [Z Motor] 17-03-17 22:35:42.878 -07 000000541 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 22:35:42.878 -07 000000541 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-17 22:35:42.878 -07 000000541 INF: Y Motor: Moving 1351 steps-30 17-03-17 22:35:42.878 -07 000000486 INF: FPGA: Recv ZDACW 17-03-17 22:35:42.888 -07 000000382 INF: FPGA: 'ZDACW 38170' command took 0 ms to send, 0 ms to get response, and 27 ms overall 17-03-17 22:35:42.888 -07 000000541 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-17 22:35:42.898 -07 000000382 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 22:35:42.898 -07 000000623 INF: FPGA: Recv ZDACR 38170 17-03-17 22:35:42.908 -07 000000382 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall 17-03-17 22:35:42.908 -07 000000382 INF: Z Motor: MoveAbsStepped took 47 ms (did NOT wait for settling yet)) 17-03-17 22:35:42.938 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 389 ms. 17-03-17 22:35:42.938 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 390 ms. 17-03-17 22:35:42.938 -07 000000576 INF: Camera: CopyActivePixFullImage start. 17-03-17 22:35:42.938 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1441468064, 0x0, 391868352) end. Duration was 394 ms. 17-03-17 22:35:42.938 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms. 17-03-17 22:35:42.938 -07 000000502 INF: Camera: CopyActivePixFullImage start. 17-03-17 22:35:42.938 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms. 17-03-17 22:35:42.948 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 22:35:42.948 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms. 17-03-17 22:35:42.948 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms. 17-03-17 22:35:43.058 -07 000000576 INF: FPGA: Recv FOCMRRFOC 17-03-17 22:35:43.058 -07 000000551 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 202 ms overall 17-03-17 22:35:43.158 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 65, FrontChillerTemperature: 3.981281, 17-03-17 22:35:43.258 -07 000000502 INF: FPGA: Recv YMVTILE 17-03-17 22:35:43.258 -07 000000541 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 383 ms overall 17-03-17 22:35:43.298 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 22:35:43.308 -07 000000569 INF: FPGA: Recv YRDPOS 146469 17-03-17 22:35:43.308 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall 17-03-17 22:35:43.308 -07 000000541 INF: Y Motor: Encoder = 146469 = motor step 114428.9 = 71.5181 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 22:35:43.308 -07 000000541 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm) 17-03-17 22:35:43.308 -07 000000541 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 384 ms, distance = 0.845 mm, average velocity = 2.200 mm/sec 17-03-17 22:35:44.258 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 22:35:44.258 -07 000000623 INF: FPGA: Recv YRDPOS 146470 17-03-17 22:35:44.268 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 22:35:44.268 -07 000000541 INF: Y Motor: Encoder = 146470 = motor step 114429.7 = 71.5186 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 22:35:44.288 -07 000000541 INF: Y Motor: After move to 71.532608, error = -0.014053, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm 17-03-17 22:35:44.288 -07 000000541 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 1 counts (0.000 mm) 17-03-17 22:35:44.288 -07 000000541 INF: Y Motor: Moved to 71.5186 after 1433 ms (table move) 17-03-17 22:35:44.288 -07 000000608 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174731 mm (DAC = 38170) 17-03-17 22:35:44.288 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:44.298 -07 000000593 INF: FPGA: Recv ZSGSRD 36495 17-03-17 22:35:44.298 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall 17-03-17 22:35:44.298 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:44.298 -07 000000458 INF: FPGA: Recv ZSGSRD 36486 17-03-17 22:35:44.308 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall 17-03-17 22:35:44.308 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:44.308 -07 000000569 INF: FPGA: Recv ZSGSRD 36486 17-03-17 22:35:44.318 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:44.318 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:44.318 -07 000000462 INF: FPGA: Recv ZSGSRD 36489 17-03-17 22:35:44.328 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:44.328 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:44.328 -07 000000576 INF: FPGA: Recv ZSGSRD 36496 17-03-17 22:35:44.338 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:44.338 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:44.338 -07 000000482 INF: FPGA: Recv ZSGSRD 36495 17-03-17 22:35:44.348 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:44.348 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:44.348 -07 000000415 INF: FPGA: Recv ZSGSRD 36484 17-03-17 22:35:44.358 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:44.358 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:44.358 -07 000000551 INF: FPGA: Recv ZSGSRD 36489 17-03-17 22:35:44.368 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:44.368 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:44.368 -07 000000551 INF: FPGA: Recv ZSGSRD 36489 17-03-17 22:35:44.378 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall 17-03-17 22:35:44.378 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:44.378 -07 000000627 INF: FPGA: Recv ZSGSRD 36488 17-03-17 22:35:44.388 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:44.388 -07 000000608 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 22:35:44.388 -07 000000547 INF: FPGA: Recv ZPIEZORD 32751 17-03-17 22:35:44.398 -07 000000608 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:44.398 -07 000000608 INF: Z Motor: Piezo is near 50.0 V (nominally 0 to 100 V), expect near 58.2 V, since DAC is at 5.824 V. Piezo Error = -8.3 V. 17-03-17 22:35:44.398 -07 000000608 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.7 um, Read 10 ADC samples: Avg = 36490 (-173.9 uncal um), Error = 0.9 uncal um, Median = 36489 (-173.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36484 (-173.8 uncal um), Max = 36496 (-173.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um) 17-03-17 22:35:44.398 -07 000000608 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36490, posNoise = 6, negNoise = 6 17-03-17 22:35:44.398 -07 000000608 INF: Z Motor: After move to -0.174731, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 22:35:44.398 -07 000000608 INF: Z Motor: Settle wait time = 1436 ms, measure time = 102 ms (allowed 150 ms), total time = 1538 ms 17-03-17 22:35:44.398 -07 000000608 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms 17-03-17 22:35:44.448 -07 000000608 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1592 ms 17-03-17 22:35:44.448 -07 000000608 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-17 22:35:44.448 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 22:35:44.448 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 22:35:44.448 -07 000000593 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 22:35:44.448 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 22:35:44.448 -07 000000551 INF: Disarm and arm camera sensor 0: ROITrigger start. 17-03-17 22:35:44.448 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 22:35:44.448 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 22:35:44.448 -07 000000551 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start. 17-03-17 22:35:44.458 -07 000000551 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms. 17-03-17 22:35:44.458 -07 000000551 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start. 17-03-17 22:35:44.468 -07 000000551 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms. 17-03-17 22:35:44.468 -07 000000551 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms. 17-03-17 22:35:44.468 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera] 17-03-17 22:35:44.508 -07 000000458 INF: FPGA: Recv @CAMSNAP turning led on 40 17-03-17 22:35:44.708 -07 000000593 INF: FPGA: Recv @CAMSNAP img rdy 240 17-03-17 22:35:44.708 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240 17-03-17 22:35:44.708 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start. 17-03-17 22:35:44.718 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start. 17-03-17 22:35:44.748 -07 000000458 INF: FPGA: Recv @CAMSNAP 280 17-03-17 22:35:44.748 -07 000000462 INF: FPGA: Recv CAMSNAP 17-03-17 22:35:44.748 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 285 ms overall 17-03-17 22:35:44.838 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 122 ms. 17-03-17 22:35:44.838 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-17 22:35:44.838 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms. 17-03-17 22:35:44.838 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 125 ms. 17-03-17 22:35:44.848 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 22:35:44.848 -07 000000459 INF: Autofocus start 17-03-17 22:35:44.848 -07 000000459 INF: MeasureProfile start 17-03-17 22:35:44.848 -07 000000547 INF: FPGA: Recv FOCMRRCUR 17-03-17 22:35:44.858 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall 17-03-17 22:35:44.858 -07 000000576 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror] 17-03-17 22:35:44.868 -07 000000459 INF: MeasureProfile done 17-03-17 22:35:44.868 -07 000000459 INF: X=-112 Z correction [um]=-0.6579942 17-03-17 22:35:44.868 -07 000000459 INF: Autofocus finished 17-03-17 22:35:45.058 -07 000000547 INF: FPGA: Recv FOCMRRIMG 17-03-17 22:35:45.058 -07 000000576 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 202 ms overall 17-03-17 22:35:45.058 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.5185546875, Z-position -0.174742853063992. ---------- 17-03-17 22:35:45.058 -07 000000610 INF: Cycle 65 Tile 15 Exposure Settings A 455 G 219 T 219 C 455 17-03-17 22:35:45.068 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36539, sync = True, waitForSettling = True) 17-03-17 22:35:45.068 -07 000000610 INF: Z Motor: Moving to -0.167265 mm, started at -0.174743 mm, distance = 7.48 um 17-03-17 22:35:45.068 -07 000000610 INF: FPGA: Xmit ZDACW 36539\n [Z Motor] 17-03-17 22:35:45.068 -07 000000593 INF: FPGA: Recv ZDACW 17-03-17 22:35:45.078 -07 000000610 INF: FPGA: 'ZDACW 36539' command took 0 ms to send, 0 ms to get response, and 8 ms overall 17-03-17 22:35:45.078 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 22:35:45.078 -07 000000459 INF: FPGA: Recv ZDACR 36539 17-03-17 22:35:45.088 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall 17-03-17 22:35:45.088 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-17 22:35:45.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:45.238 -07 000000547 INF: FPGA: Recv ZSGSRD 35328 17-03-17 22:35:45.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 22:35:45.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:45.248 -07 000000576 INF: FPGA: Recv ZSGSRD 35326 17-03-17 22:35:45.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:45.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:45.258 -07 000000623 INF: FPGA: Recv ZSGSRD 35329 17-03-17 22:35:45.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:45.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:45.268 -07 000000502 INF: FPGA: Recv ZSGSRD 35329 17-03-17 22:35:45.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:45.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:45.278 -07 000000415 INF: FPGA: Recv ZSGSRD 35331 17-03-17 22:35:45.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:45.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:45.288 -07 000000551 INF: FPGA: Recv ZSGSRD 35326 17-03-17 22:35:45.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:45.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:45.298 -07 000000541 INF: FPGA: Recv ZSGSRD 35328 17-03-17 22:35:45.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:45.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:45.308 -07 000000623 INF: FPGA: Recv ZSGSRD 35326 17-03-17 22:35:45.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:45.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:45.318 -07 000000482 INF: FPGA: Recv ZSGSRD 35326 17-03-17 22:35:45.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:45.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:45.328 -07 000000547 INF: FPGA: Recv ZSGSRD 35324 17-03-17 22:35:45.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:45.338 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 22:35:45.338 -07 000000458 INF: FPGA: Recv ZPIEZORD 31239 17-03-17 22:35:45.348 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:45.348 -07 000000610 INF: Z Motor: Piezo is near 46.7 V (nominally 0 to 100 V), expect near 55.8 V, since DAC is at 5.575 V. Piezo Error = -9.0 V. 17-03-17 22:35:45.348 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.3 um, Read 10 ADC samples: Avg = 35327 (-166.4 uncal um), Error = 0.9 uncal um, Median = 35327 (-166.4 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 35324 (-166.4 uncal um), Max = 35331 (-166.4 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um) 17-03-17 22:35:45.348 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35327, posNoise = 4, negNoise = 3 17-03-17 22:35:45.348 -07 000000610 INF: Z Motor: After move to -0.167265, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 22:35:45.348 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms) 17-03-17 22:35:45.348 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 22:35:45.348 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 22:35:45.348 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 22:35:45.348 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 22:35:45.348 -07 000000547 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-17 22:35:45.348 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 22:35:45.348 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-17 22:35:45.348 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-17 22:35:45.348 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms. 17-03-17 22:35:45.348 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-17 22:35:45.358 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms. 17-03-17 22:35:45.358 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-17 22:35:45.358 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms. 17-03-17 22:35:45.358 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-17 22:35:45.358 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms. 17-03-17 22:35:45.358 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-17 22:35:45.368 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms. 17-03-17 22:35:45.368 -07 000000547 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms. 17-03-17 22:35:45.368 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms. 17-03-17 22:35:45.368 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms. 17-03-17 22:35:45.368 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 455 455 219 219 36716 150\n [Camera] 17-03-17 22:35:45.568 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-17 22:35:46.028 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 647 17-03-17 22:35:46.028 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 647 17-03-17 22:35:46.028 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 22:35:46.028 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 647 17-03-17 22:35:46.028 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 647 17-03-17 22:35:46.028 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 22:35:46.028 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 22:35:46.028 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start. 17-03-17 22:35:46.038 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 22:35:46.038 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 1406045800, 0x0, 418435064) start. 17-03-17 22:35:46.218 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36716 840 17-03-17 22:35:46.368 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP turning grn on 990 17-03-17 22:35:46.408 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 1406045800, 0x0, 418435064) end. Duration was 371 ms. 17-03-17 22:35:46.408 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms. 17-03-17 22:35:46.408 -07 000000623 INF: Camera: CopyActivePixFullImage start. 17-03-17 22:35:46.408 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 374 ms. 17-03-17 22:35:46.408 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms. 17-03-17 22:35:46.408 -07 000000486 INF: Camera: CopyActivePixFullImage start. 17-03-17 22:35:46.408 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-17 22:35:46.408 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms. 17-03-17 22:35:46.408 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms. 17-03-17 22:35:46.418 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms. 17-03-17 22:35:46.588 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1209 17-03-17 22:35:46.588 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1209 17-03-17 22:35:46.588 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1209 17-03-17 22:35:46.588 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 22:35:46.588 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1209 17-03-17 22:35:46.588 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 22:35:46.588 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 22:35:46.588 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start. 17-03-17 22:35:46.598 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 22:35:46.598 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1130172064, 0x0, 391868352) start. 17-03-17 22:35:46.778 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP 1402 17-03-17 22:35:46.778 -07 000000462 INF: FPGA: Recv CAMDBLSNAP 17-03-17 22:35:46.778 -07 000000610 INF: FPGA: 'CAMDBLSNAP 455 455 219 219 36716 150' command took 2 ms to send, 1403 ms to get response, and 1408 ms overall 17-03-17 22:35:46.778 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880 17-03-17 22:35:46.778 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.5185546875, Z-Position -0.167271494343124. ------ 17-03-17 22:35:46.778 -07 000000541 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.17362 mm 17-03-17 22:35:46.778 -07 000000541 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-17 22:35:46.778 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 22:35:46.788 -07 000000608 INF: FPGA: Recv FOCMRRCUR 17-03-17 22:35:46.788 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall 17-03-17 22:35:46.788 -07 000000480 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror] 17-03-17 22:35:46.788 -07 000000551 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True) 17-03-17 22:35:46.788 -07 000000576 INF: Z Motor: Entering MoveAbsStepped (DAC = 37927, sync = True, waitForSettling = False) 17-03-17 22:35:46.788 -07 000000576 INF: Z Motor: Moving to -0.173619 mm, started at -0.167271 mm, distance = -6.35 um 17-03-17 22:35:46.788 -07 000000551 INF: Y Motor: Moving to 72.3626 mm, started at 71.5186 mm, delta = 0.8441 mm 17-03-17 22:35:46.798 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 22:35:46.798 -07 000000415 INF: FPGA: Recv YRDPOS 146470 17-03-17 22:35:46.808 -07 000000576 INF: FPGA: Xmit ZDACW 37927\n [Z Motor] 17-03-17 22:35:46.808 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 16 ms overall 17-03-17 22:35:46.808 -07 000000551 INF: Y Motor: Encoder = 146470 = motor step 114429.7 = 71.5186 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 22:35:46.808 -07 000000551 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-17 22:35:46.808 -07 000000551 INF: Y Motor: Moving 1350 steps-30 17-03-17 22:35:46.808 -07 000000502 INF: FPGA: Recv ZDACW 17-03-17 22:35:46.818 -07 000000576 INF: FPGA: 'ZDACW 37927' command took 0 ms to send, 0 ms to get response, and 27 ms overall 17-03-17 22:35:46.818 -07 000000576 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 22:35:46.818 -07 000000458 INF: FPGA: Recv ZDACR 37927 17-03-17 22:35:46.828 -07 000000551 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-17 22:35:46.828 -07 000000576 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:46.828 -07 000000576 INF: Z Motor: MoveAbsStepped took 37 ms (did NOT wait for settling yet)) 17-03-17 22:35:46.988 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 394 ms. 17-03-17 22:35:46.988 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms. 17-03-17 22:35:46.988 -07 000000547 INF: Camera: CopyActivePixFullImage start. 17-03-17 22:35:46.988 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 22:35:46.988 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1130172064, 0x0, 391868352) end. Duration was 393 ms. 17-03-17 22:35:46.988 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms. 17-03-17 22:35:46.988 -07 000000569 INF: Camera: CopyActivePixFullImage start. 17-03-17 22:35:46.988 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 64. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1026, R2=1057, Total=2083. Warn if over 250 bubbles per interval. 17-03-17 22:35:46.988 -07 000000593 INF: FPGA: Recv FOCMRRFOC 17-03-17 22:35:46.988 -07 000000480 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 196 ms to get response, and 203 ms overall 17-03-17 22:35:46.988 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms. 17-03-17 22:35:46.988 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-17 22:35:46.988 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms. 17-03-17 22:35:47.008 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms. 17-03-17 22:35:47.198 -07 000000623 INF: FPGA: Recv YMVTILE 17-03-17 22:35:47.198 -07 000000551 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall 17-03-17 22:35:47.238 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 22:35:47.248 -07 000000547 INF: FPGA: Recv YRDPOS 148171 17-03-17 22:35:47.248 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall 17-03-17 22:35:47.248 -07 000000551 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 22:35:47.248 -07 000000551 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm) 17-03-17 22:35:47.248 -07 000000551 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.844 mm, average velocity = 2.126 mm/sec 17-03-17 22:35:48.198 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 22:35:48.198 -07 000000382 INF: FPGA: Recv YRDPOS 148171 17-03-17 22:35:48.208 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:48.208 -07 000000551 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 22:35:48.228 -07 000000551 INF: Y Motor: After move to 72.362610, error = -0.013489, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm 17-03-17 22:35:48.228 -07 000000551 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm) 17-03-17 22:35:48.228 -07 000000551 INF: Y Motor: Moved to 72.3491 after 1444 ms (table move) 17-03-17 22:35:48.238 -07 000000541 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173619 mm (DAC = 37927) 17-03-17 22:35:48.238 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:48.238 -07 000000608 INF: FPGA: Recv ZSGSRD 36320 17-03-17 22:35:48.248 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:48.248 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:48.248 -07 000000462 INF: FPGA: Recv ZSGSRD 36317 17-03-17 22:35:48.258 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:48.258 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:48.258 -07 000000462 INF: FPGA: Recv ZSGSRD 36320 17-03-17 22:35:48.268 -07 000000541 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:48.268 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:48.268 -07 000000502 INF: FPGA: Recv ZSGSRD 36316 17-03-17 22:35:48.278 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:48.278 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:48.278 -07 000000569 INF: FPGA: Recv ZSGSRD 36311 17-03-17 22:35:48.288 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:48.288 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:48.288 -07 000000415 INF: FPGA: Recv ZSGSRD 36314 17-03-17 22:35:48.298 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:48.298 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:48.298 -07 000000547 INF: FPGA: Recv ZSGSRD 36317 17-03-17 22:35:48.308 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:48.308 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:48.308 -07 000000623 INF: FPGA: Recv ZSGSRD 36314 17-03-17 22:35:48.318 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:48.318 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:48.318 -07 000000415 INF: FPGA: Recv ZSGSRD 36313 17-03-17 22:35:48.328 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:48.328 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:48.328 -07 000000486 INF: FPGA: Recv ZSGSRD 36316 17-03-17 22:35:48.338 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:48.338 -07 000000541 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 22:35:48.338 -07 000000547 INF: FPGA: Recv ZPIEZORD 32584 17-03-17 22:35:48.348 -07 000000541 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:48.348 -07 000000541 INF: Z Motor: Piezo is near 49.6 V (nominally 0 to 100 V), expect near 57.9 V, since DAC is at 5.787 V. Piezo Error = -8.3 V. 17-03-17 22:35:48.348 -07 000000541 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.6 um, Read 10 ADC samples: Avg = 36316 (-172.7 uncal um), Error = 0.9 uncal um, Median = 36316 (-172.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 36311 (-172.7 uncal um), Max = 36320 (-172.8 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um) 17-03-17 22:35:48.348 -07 000000541 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36316, posNoise = 4, negNoise = 5 17-03-17 22:35:48.348 -07 000000541 INF: Z Motor: After move to -0.173619, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 22:35:48.348 -07 000000541 INF: Z Motor: Settle wait time = 1447 ms, measure time = 110 ms (allowed 150 ms), total time = 1557 ms 17-03-17 22:35:48.348 -07 000000541 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms 17-03-17 22:35:48.388 -07 000000541 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1601 ms 17-03-17 22:35:48.388 -07 000000541 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-17 22:35:48.388 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 22:35:48.388 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 22:35:48.388 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 22:35:48.388 -07 000000486 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 22:35:48.388 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger start. 17-03-17 22:35:48.388 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 22:35:48.398 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 22:35:48.398 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start. 17-03-17 22:35:48.398 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms. 17-03-17 22:35:48.398 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start. 17-03-17 22:35:48.408 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms. 17-03-17 22:35:48.408 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms. 17-03-17 22:35:48.408 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera] 17-03-17 22:35:48.448 -07 000000382 INF: FPGA: Recv @CAMSNAP turning led on 40 17-03-17 22:35:48.528 -07 000000608 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 65, FrontChillerTemperature: 3.98264, 17-03-17 22:35:48.648 -07 000000486 INF: FPGA: Recv @CAMSNAP img rdy 240 17-03-17 22:35:48.648 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240 17-03-17 22:35:48.648 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start. 17-03-17 22:35:48.658 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1476890328, 0x0, 559484976) start. 17-03-17 22:35:48.688 -07 000000459 INF: FPGA: Recv @CAMSNAP 280 17-03-17 22:35:48.688 -07 000000480 INF: FPGA: Recv CAMSNAP 17-03-17 22:35:48.688 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 284 ms overall 17-03-17 22:35:48.768 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1476890328, 0x0, 559484976) end. Duration was 114 ms. 17-03-17 22:35:48.768 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-17 22:35:48.768 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms. 17-03-17 22:35:48.768 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms. 17-03-17 22:35:48.788 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 22:35:48.788 -07 000000458 INF: Autofocus start 17-03-17 22:35:48.788 -07 000000458 INF: MeasureProfile start 17-03-17 22:35:48.798 -07 000000623 INF: FPGA: Recv FOCMRRCUR 17-03-17 22:35:48.798 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall 17-03-17 22:35:48.798 -07 000000462 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror] 17-03-17 22:35:48.808 -07 000000458 INF: MeasureProfile done 17-03-17 22:35:48.808 -07 000000458 INF: X=32 Z correction [um]=0.09220707 17-03-17 22:35:48.808 -07 000000458 INF: Autofocus finished 17-03-17 22:35:48.998 -07 000000458 INF: FPGA: Recv FOCMRRIMG 17-03-17 22:35:48.998 -07 000000462 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 202 ms overall 17-03-17 22:35:49.008 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.34912109375, Z-position -0.173625040151326. ---------- 17-03-17 22:35:49.008 -07 000000610 INF: Cycle 65 Tile 16 Exposure Settings A 455 G 219 T 219 C 455 17-03-17 22:35:49.008 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36460, sync = True, waitForSettling = True) 17-03-17 22:35:49.008 -07 000000610 INF: Z Motor: Moving to -0.166903 mm, started at -0.173625 mm, distance = 6.72 um 17-03-17 22:35:49.008 -07 000000610 INF: FPGA: Xmit ZDACW 36460\n [Z Motor] 17-03-17 22:35:49.008 -07 000000415 INF: FPGA: Recv ZDACW 17-03-17 22:35:49.018 -07 000000610 INF: FPGA: 'ZDACW 36460' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-17 22:35:49.018 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 22:35:49.018 -07 000000547 INF: FPGA: Recv ZDACR 36460 17-03-17 22:35:49.028 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:49.028 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-17 22:35:49.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:49.178 -07 000000458 INF: FPGA: Recv ZSGSRD 35274 17-03-17 22:35:49.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 22:35:49.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:49.188 -07 000000382 INF: FPGA: Recv ZSGSRD 35273 17-03-17 22:35:49.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:49.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:49.198 -07 000000502 INF: FPGA: Recv ZSGSRD 35270 17-03-17 22:35:49.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:49.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:49.208 -07 000000593 INF: FPGA: Recv ZSGSRD 35273 17-03-17 22:35:49.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:49.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:49.218 -07 000000482 INF: FPGA: Recv ZSGSRD 35271 17-03-17 22:35:49.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:49.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:49.228 -07 000000480 INF: FPGA: Recv ZSGSRD 35281 17-03-17 22:35:49.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 4 ms to get response, and 13 ms overall 17-03-17 22:35:49.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:49.238 -07 000000551 INF: FPGA: Recv ZSGSRD 35269 17-03-17 22:35:49.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall 17-03-17 22:35:49.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:49.248 -07 000000576 INF: FPGA: Recv ZSGSRD 35259 17-03-17 22:35:49.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 22:35:49.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:49.258 -07 000000486 INF: FPGA: Recv ZSGSRD 35275 17-03-17 22:35:49.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:49.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:49.268 -07 000000541 INF: FPGA: Recv ZSGSRD 35270 17-03-17 22:35:49.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:49.278 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 22:35:49.278 -07 000000627 INF: FPGA: Recv ZPIEZORD 31194 17-03-17 22:35:49.288 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:49.288 -07 000000610 INF: Z Motor: Piezo is near 46.6 V (nominally 0 to 100 V), expect near 55.6 V, since DAC is at 5.563 V. Piezo Error = -9.0 V. 17-03-17 22:35:49.288 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.9 um, Read 10 ADC samples: Avg = 35272 (-166.1 uncal um), Error = 0.9 uncal um, Median = 35272 (-166.1 uncal um), StdDev = 6 (0.0 uncal um), Range = 22 (0.1 uncal um), Min = 35259 (-166.0 uncal um), Max = 35281 (-166.1 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 13 (0.1 uncal um) 17-03-17 22:35:49.288 -07 000000610 INF: Z Motor: ADC noise = 13, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35272, posNoise = 9, negNoise = 13 17-03-17 22:35:49.288 -07 000000610 INF: Z Motor: After move to -0.166903, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 22:35:49.288 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms) 17-03-17 22:35:49.288 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 22:35:49.288 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 22:35:49.288 -07 000000623 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 22:35:49.288 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 22:35:49.288 -07 000000415 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-17 22:35:49.288 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-17 22:35:49.288 -07 000000482 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-17 22:35:49.288 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 22:35:49.288 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms. 17-03-17 22:35:49.288 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-17 22:35:49.288 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 22:35:49.288 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-17 22:35:49.298 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms. 17-03-17 22:35:49.298 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-17 22:35:49.298 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms. 17-03-17 22:35:49.298 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-17 22:35:49.308 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms. 17-03-17 22:35:49.308 -07 000000415 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms. 17-03-17 22:35:49.308 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms. 17-03-17 22:35:49.308 -07 000000482 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms. 17-03-17 22:35:49.318 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 455 455 219 219 36637 150\n [Camera] 17-03-17 22:35:49.518 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-17 22:35:49.968 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 647 17-03-17 22:35:49.968 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 647 17-03-17 22:35:49.968 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 22:35:49.968 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 22:35:49.968 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start. 17-03-17 22:35:49.968 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 647 17-03-17 22:35:49.968 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 647 17-03-17 22:35:49.968 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 22:35:49.968 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 22:35:49.968 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start. 17-03-17 22:35:50.158 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36637 840 17-03-17 22:35:50.308 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP turning grn on 990 17-03-17 22:35:50.368 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 394 ms. 17-03-17 22:35:50.368 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms. 17-03-17 22:35:50.368 -07 000000551 INF: Camera: CopyActivePixFullImage start. 17-03-17 22:35:50.368 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 391 ms. 17-03-17 22:35:50.368 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms. 17-03-17 22:35:50.368 -07 000000547 INF: Camera: CopyActivePixFullImage start. 17-03-17 22:35:50.368 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-17 22:35:50.368 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms. 17-03-17 22:35:50.368 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-17 22:35:50.378 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 404 ms. 17-03-17 22:35:50.528 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1209 17-03-17 22:35:50.528 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1209 17-03-17 22:35:50.528 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 22:35:50.528 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 22:35:50.528 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start. 17-03-17 22:35:50.538 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1209 17-03-17 22:35:50.538 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1209 17-03-17 22:35:50.538 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 22:35:50.538 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 22:35:50.538 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start. 17-03-17 22:35:50.718 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP 1401 17-03-17 22:35:50.718 -07 000000547 INF: FPGA: Recv CAMDBLSNAP 17-03-17 22:35:50.718 -07 000000610 INF: FPGA: 'CAMDBLSNAP 455 455 219 219 36637 150' command took 2 ms to send, 1399 ms to get response, and 1409 ms overall 17-03-17 22:35:50.728 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880 17-03-17 22:35:50.728 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.34912109375, Z-Position -0.166918162675327. ------ 17-03-17 22:35:50.728 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 22:35:50.728 -07 000000608 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.17343 mm 17-03-17 22:35:50.728 -07 000000608 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-17 22:35:50.838 -07 000000541 INF: FPGA: Recv FOCMRRCUR 17-03-17 22:35:50.838 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 113 ms overall 17-03-17 22:35:50.838 -07 000000576 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror] 17-03-17 22:35:50.838 -07 000000551 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True) 17-03-17 22:35:50.838 -07 000000459 INF: Z Motor: Entering MoveAbsStepped (DAC = 37885, sync = True, waitForSettling = False) 17-03-17 22:35:50.838 -07 000000459 INF: Z Motor: Moving to -0.173426 mm, started at -0.166918 mm, distance = -6.51 um 17-03-17 22:35:50.838 -07 000000551 INF: Y Motor: Moving to 73.1926 mm, started at 72.3491 mm, delta = 0.8435 mm 17-03-17 22:35:50.848 -07 000000459 INF: FPGA: Xmit ZDACW 37885\n [Z Motor] 17-03-17 22:35:50.848 -07 000000547 INF: FPGA: Recv ZDACW 17-03-17 22:35:50.858 -07 000000459 INF: FPGA: 'ZDACW 37885' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 22:35:50.858 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 22:35:50.858 -07 000000627 INF: FPGA: Recv YRDPOS 148171 17-03-17 22:35:50.868 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 20 ms overall 17-03-17 22:35:50.868 -07 000000551 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 22:35:50.868 -07 000000551 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-17 22:35:50.868 -07 000000551 INF: Y Motor: Moving 1350 steps-28 17-03-17 22:35:50.868 -07 000000459 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 22:35:50.868 -07 000000547 INF: FPGA: Recv ZDACR 37885 17-03-17 22:35:50.878 -07 000000459 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall 17-03-17 22:35:50.878 -07 000000459 INF: Z Motor: MoveAbsStepped took 30 ms (did NOT wait for settling yet)) 17-03-17 22:35:50.878 -07 000000551 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-17 22:35:50.918 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 387 ms. 17-03-17 22:35:50.918 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 387 ms. 17-03-17 22:35:50.918 -07 000000623 INF: Camera: CopyActivePixFullImage start. 17-03-17 22:35:50.928 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 391 ms. 17-03-17 22:35:50.928 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms. 17-03-17 22:35:50.928 -07 000000569 INF: Camera: CopyActivePixFullImage start. 17-03-17 22:35:50.928 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 22:35:50.928 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms. 17-03-17 22:35:50.928 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 398 ms. 17-03-17 22:35:50.928 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms. 17-03-17 22:35:51.048 -07 000000415 INF: FPGA: Recv FOCMRRFOC 17-03-17 22:35:51.048 -07 000000576 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 201 ms to get response, and 202 ms overall 17-03-17 22:35:51.248 -07 000000486 INF: FPGA: Recv YMVTILE 17-03-17 22:35:51.258 -07 000000551 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 390 ms overall 17-03-17 22:35:51.298 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 22:35:51.298 -07 000000480 INF: FPGA: Recv YRDPOS 149863 17-03-17 22:35:51.308 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 22:35:51.308 -07 000000551 INF: Y Motor: Encoder = 149863 = motor step 117080.5 = 73.1753 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 22:35:51.308 -07 000000551 INF: Y Motor: Position error before settling (table move) = -35 encoder counts (-0.017 mm) 17-03-17 22:35:51.308 -07 000000551 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 390 ms, distance = 0.843 mm, average velocity = 2.163 mm/sec 17-03-17 22:35:51.988 -07 000000458 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 22:35:51.988 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 64. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1026, R2=1057, Total=2083. Warn if over 250 bubbles per interval. 17-03-17 22:35:52.258 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 22:35:52.258 -07 000000593 INF: FPGA: Recv YRDPOS 149864 17-03-17 22:35:52.268 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 22:35:52.268 -07 000000551 INF: Y Motor: Encoder = 149864 = motor step 117081.3 = 73.1758 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 22:35:52.288 -07 000000551 INF: Y Motor: After move to 73.192604, error = -0.016823, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm 17-03-17 22:35:52.288 -07 000000551 INF: Y Motor: Position error after settling (table move) = -34 encoder counts (-0.017 mm), Delta during settling = 1 counts (0.000 mm) 17-03-17 22:35:52.288 -07 000000551 INF: Y Motor: Moved to 73.1758 after 1445 ms (table move) 17-03-17 22:35:52.288 -07 000000608 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173426 mm (DAC = 37885) 17-03-17 22:35:52.288 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:52.298 -07 000000547 INF: FPGA: Recv ZSGSRD 36290 17-03-17 22:35:52.298 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall 17-03-17 22:35:52.298 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:52.298 -07 000000593 INF: FPGA: Recv ZSGSRD 36285 17-03-17 22:35:52.308 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall 17-03-17 22:35:52.308 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:52.308 -07 000000486 INF: FPGA: Recv ZSGSRD 36287 17-03-17 22:35:52.318 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:52.318 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:52.318 -07 000000551 INF: FPGA: Recv ZSGSRD 36292 17-03-17 22:35:52.328 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:52.328 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:52.328 -07 000000415 INF: FPGA: Recv ZSGSRD 36288 17-03-17 22:35:52.338 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:52.338 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:52.338 -07 000000593 INF: FPGA: Recv ZSGSRD 36291 17-03-17 22:35:52.348 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:52.348 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:52.348 -07 000000382 INF: FPGA: Recv ZSGSRD 36286 17-03-17 22:35:52.358 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:52.358 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:52.358 -07 000000576 INF: FPGA: Recv ZSGSRD 36281 17-03-17 22:35:52.368 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:52.368 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:52.368 -07 000000623 INF: FPGA: Recv ZSGSRD 36281 17-03-17 22:35:52.378 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:52.378 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:52.378 -07 000000502 INF: FPGA: Recv ZSGSRD 36288 17-03-17 22:35:52.388 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:52.388 -07 000000608 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 22:35:52.388 -07 000000480 INF: FPGA: Recv ZPIEZORD 32518 17-03-17 22:35:52.398 -07 000000608 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:52.398 -07 000000608 INF: Z Motor: Piezo is near 49.5 V (nominally 0 to 100 V), expect near 57.8 V, since DAC is at 5.781 V. Piezo Error = -8.3 V. 17-03-17 22:35:52.398 -07 000000608 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.4 um, Read 10 ADC samples: Avg = 36287 (-172.6 uncal um), Error = 0.9 uncal um, Median = 36288 (-172.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36281 (-172.5 uncal um), Max = 36292 (-172.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um) 17-03-17 22:35:52.398 -07 000000608 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36287, posNoise = 5, negNoise = 6 17-03-17 22:35:52.398 -07 000000608 INF: Z Motor: After move to -0.173426, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 22:35:52.398 -07 000000608 INF: Z Motor: Settle wait time = 1450 ms, measure time = 101 ms (allowed 150 ms), total time = 1551 ms 17-03-17 22:35:52.398 -07 000000608 INF: Z Motor: Waiting extra 49 ms after reading position to reach expected total of 150 ms 17-03-17 22:35:52.448 -07 000000608 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1715 ms 17-03-17 22:35:52.448 -07 000000608 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-17 22:35:52.448 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 22:35:52.448 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 22:35:52.448 -07 000000541 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 22:35:52.448 -07 000000415 INF: Disarm and arm camera sensor 0: ROITrigger start. 17-03-17 22:35:52.448 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 22:35:52.448 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 22:35:52.448 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 22:35:52.448 -07 000000415 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start. 17-03-17 22:35:52.458 -07 000000415 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms. 17-03-17 22:35:52.458 -07 000000415 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start. 17-03-17 22:35:52.468 -07 000000415 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms. 17-03-17 22:35:52.468 -07 000000415 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms. 17-03-17 22:35:52.468 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera] 17-03-17 22:35:52.518 -07 000000415 INF: FPGA: Recv @CAMSNAP turning led on 40 17-03-17 22:35:52.718 -07 000000547 INF: FPGA: Recv @CAMSNAP img rdy 240 17-03-17 22:35:52.718 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240 17-03-17 22:35:52.718 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start. 17-03-17 22:35:52.718 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start. 17-03-17 22:35:52.758 -07 000000415 INF: FPGA: Recv @CAMSNAP 280 17-03-17 22:35:52.758 -07 000000627 INF: FPGA: Recv CAMSNAP 17-03-17 22:35:52.758 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 284 ms overall 17-03-17 22:35:52.848 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 127 ms. 17-03-17 22:35:52.848 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-17 22:35:52.848 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms. 17-03-17 22:35:52.848 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms. 17-03-17 22:35:52.858 -07 000000486 INF: Autofocus start 17-03-17 22:35:52.858 -07 000000486 INF: MeasureProfile start 17-03-17 22:35:52.858 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 22:35:52.858 -07 000000382 INF: FPGA: Recv FOCMRRCUR 17-03-17 22:35:52.868 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-17 22:35:52.868 -07 000000480 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror] 17-03-17 22:35:52.868 -07 000000486 INF: MeasureProfile done 17-03-17 22:35:52.868 -07 000000486 INF: X=0 Z correction [um]=-0.0713522 17-03-17 22:35:52.868 -07 000000486 INF: Autofocus finished 17-03-17 22:35:53.068 -07 000000458 INF: FPGA: Recv FOCMRRIMG 17-03-17 22:35:53.068 -07 000000480 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall 17-03-17 22:35:53.068 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.17578125, Z-position -0.173438737999215. ---------- 17-03-17 22:35:53.068 -07 000000610 INF: Cycle 65 Tile 17 Exposure Settings A 455 G 219 T 219 C 455 17-03-17 22:35:53.078 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36382, sync = True, waitForSettling = True) 17-03-17 22:35:53.078 -07 000000610 INF: Z Motor: Moving to -0.166546 mm, started at -0.173439 mm, distance = 6.89 um 17-03-17 22:35:53.078 -07 000000610 INF: FPGA: Xmit ZDACW 36382\n [Z Motor] 17-03-17 22:35:53.078 -07 000000415 INF: FPGA: Recv ZDACW 17-03-17 22:35:53.088 -07 000000610 INF: FPGA: 'ZDACW 36382' command took 0 ms to send, 0 ms to get response, and 8 ms overall 17-03-17 22:35:53.088 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 22:35:53.088 -07 000000576 INF: FPGA: Recv ZDACR 36382 17-03-17 22:35:53.098 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:53.098 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-17 22:35:53.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:53.248 -07 000000541 INF: FPGA: Recv ZSGSRD 35215 17-03-17 22:35:53.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 22:35:53.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:53.258 -07 000000593 INF: FPGA: Recv ZSGSRD 35215 17-03-17 22:35:53.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:53.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:53.268 -07 000000502 INF: FPGA: Recv ZSGSRD 35220 17-03-17 22:35:53.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:53.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:53.278 -07 000000569 INF: FPGA: Recv ZSGSRD 35218 17-03-17 22:35:53.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:53.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:53.288 -07 000000551 INF: FPGA: Recv ZSGSRD 35215 17-03-17 22:35:53.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 22:35:53.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:53.298 -07 000000576 INF: FPGA: Recv ZSGSRD 35217 17-03-17 22:35:53.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:53.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:53.308 -07 000000593 INF: FPGA: Recv ZSGSRD 35215 17-03-17 22:35:53.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:53.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:53.318 -07 000000502 INF: FPGA: Recv ZSGSRD 35217 17-03-17 22:35:53.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:53.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:53.328 -07 000000459 INF: FPGA: Recv ZSGSRD 35216 17-03-17 22:35:53.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:53.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:53.338 -07 000000551 INF: FPGA: Recv ZSGSRD 35213 17-03-17 22:35:53.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:53.348 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 22:35:53.348 -07 000000458 INF: FPGA: Recv ZPIEZORD 31093 17-03-17 22:35:53.358 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:53.358 -07 000000610 INF: Z Motor: Piezo is near 46.4 V (nominally 0 to 100 V), expect near 55.5 V, since DAC is at 5.552 V. Piezo Error = -9.1 V. 17-03-17 22:35:53.358 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.5 um, Read 10 ADC samples: Avg = 35216 (-165.7 uncal um), Error = 0.9 uncal um, Median = 35216 (-165.7 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 35213 (-165.7 uncal um), Max = 35220 (-165.7 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um) 17-03-17 22:35:53.358 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35216, posNoise = 4, negNoise = 3 17-03-17 22:35:53.358 -07 000000610 INF: Z Motor: After move to -0.166546, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 22:35:53.358 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms) 17-03-17 22:35:53.358 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 22:35:53.358 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 22:35:53.358 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 22:35:53.358 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-17 22:35:53.358 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 22:35:53.358 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-17 22:35:53.358 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-17 22:35:53.358 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 22:35:53.358 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 22:35:53.358 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-17 22:35:53.358 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms. 17-03-17 22:35:53.358 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-17 22:35:53.368 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms. 17-03-17 22:35:53.368 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-17 22:35:53.368 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms. 17-03-17 22:35:53.368 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-17 22:35:53.378 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms. 17-03-17 22:35:53.378 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms. 17-03-17 22:35:53.378 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms. 17-03-17 22:35:53.378 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms. 17-03-17 22:35:53.378 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 455 455 219 219 36558 150\n [Camera] 17-03-17 22:35:53.588 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning red on 195 17-03-17 22:35:53.898 -07 000000458 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 65, FrontChillerTemperature: 3.996267, 17-03-17 22:35:54.038 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 647 17-03-17 22:35:54.038 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 647 17-03-17 22:35:54.038 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 22:35:54.038 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 647 17-03-17 22:35:54.038 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 647 17-03-17 22:35:54.038 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 22:35:54.038 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 22:35:54.038 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start. 17-03-17 22:35:54.048 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 22:35:54.048 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 1406045800, 0x0, 418435064) start. 17-03-17 22:35:54.228 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36558 840 17-03-17 22:35:54.378 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP turning grn on 990 17-03-17 22:35:54.418 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 1406045800, 0x0, 418435064) end. Duration was 375 ms. 17-03-17 22:35:54.418 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms. 17-03-17 22:35:54.418 -07 000000482 INF: Camera: CopyActivePixFullImage start. 17-03-17 22:35:54.418 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 379 ms. 17-03-17 22:35:54.418 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms. 17-03-17 22:35:54.418 -07 000000569 INF: Camera: CopyActivePixFullImage start. 17-03-17 22:35:54.428 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms. 17-03-17 22:35:54.428 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms. 17-03-17 22:35:54.428 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms. 17-03-17 22:35:54.438 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms. 17-03-17 22:35:54.598 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1209 17-03-17 22:35:54.598 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1209 17-03-17 22:35:54.598 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 22:35:54.608 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1209 17-03-17 22:35:54.608 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1209 17-03-17 22:35:54.608 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 22:35:54.608 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 22:35:54.608 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 1441468064, 0x0, 391868352) start. 17-03-17 22:35:54.608 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 22:35:54.608 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start. 17-03-17 22:35:54.788 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP 1402 17-03-17 22:35:54.788 -07 000000541 INF: FPGA: Recv CAMDBLSNAP 17-03-17 22:35:54.788 -07 000000610 INF: FPGA: 'CAMDBLSNAP 455 455 219 219 36558 150' command took 2 ms to send, 1397 ms to get response, and 1408 ms overall 17-03-17 22:35:54.788 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880 17-03-17 22:35:54.788 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.17578125, Z-Position -0.166558406795389. ------ 17-03-17 22:35:54.918 -07 000000486 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 22:35:54.918 -07 000000480 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.17302 mm 17-03-17 22:35:54.918 -07 000000480 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-17 22:35:54.918 -07 000000482 INF: FPGA: Recv FOCMRRCUR 17-03-17 22:35:54.918 -07 000000569 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True) 17-03-17 22:35:54.918 -07 000000569 INF: Y Motor: Moving to 74.0226 mm, started at 73.1758 mm, delta = 0.8468 mm 17-03-17 22:35:54.918 -07 000000623 INF: Z Motor: Entering MoveAbsStepped (DAC = 37795, sync = True, waitForSettling = False) 17-03-17 22:35:54.918 -07 000000623 INF: Z Motor: Moving to -0.173014 mm, started at -0.166558 mm, distance = -6.46 um 17-03-17 22:35:54.928 -07 000000486 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-17 22:35:54.928 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 22:35:54.928 -07 000000627 INF: FPGA: Recv YRDPOS 149864 17-03-17 22:35:54.938 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall 17-03-17 22:35:54.938 -07 000000569 INF: Y Motor: Encoder = 149864 = motor step 117081.3 = 73.1758 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 22:35:54.938 -07 000000569 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-17 22:35:54.938 -07 000000569 INF: Y Motor: Moving 1355 steps-35 17-03-17 22:35:54.938 -07 000000623 INF: FPGA: Xmit ZDACW 37795\n [Z Motor] 17-03-17 22:35:54.938 -07 000000608 INF: FPGA: Recv ZDACW 17-03-17 22:35:54.948 -07 000000486 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror] 17-03-17 22:35:54.948 -07 000000623 INF: FPGA: 'ZDACW 37795' command took 1 ms to send, 0 ms to get response, and 22 ms overall 17-03-17 22:35:54.958 -07 000000569 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-17 22:35:54.968 -07 000000623 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 22:35:54.968 -07 000000627 INF: FPGA: Recv ZDACR 37795 17-03-17 22:35:54.978 -07 000000623 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall 17-03-17 22:35:54.978 -07 000000623 INF: Z Motor: MoveAbsStepped took 52 ms (did NOT wait for settling yet)) 17-03-17 22:35:54.988 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 1441468064, 0x0, 391868352) end. Duration was 380 ms. 17-03-17 22:35:54.988 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms. 17-03-17 22:35:54.988 -07 000000576 INF: Camera: CopyActivePixFullImage start. 17-03-17 22:35:54.988 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 380 ms. 17-03-17 22:35:54.988 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms. 17-03-17 22:35:54.988 -07 000000462 INF: Camera: CopyActivePixFullImage start. 17-03-17 22:35:54.988 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 22:35:54.988 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms. 17-03-17 22:35:54.998 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 22:35:54.998 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms. 17-03-17 22:35:55.148 -07 000000382 INF: FPGA: Recv FOCMRRFOC 17-03-17 22:35:55.148 -07 000000486 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall 17-03-17 22:35:55.328 -07 000000415 INF: FPGA: Recv YMVTILE 17-03-17 22:35:55.328 -07 000000569 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall 17-03-17 22:35:55.368 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 22:35:55.368 -07 000000486 INF: FPGA: Recv YRDPOS 151567 17-03-17 22:35:55.378 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 22:35:55.378 -07 000000569 INF: Y Motor: Encoder = 151567 = motor step 118411.7 = 74.0073 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 22:35:55.378 -07 000000569 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm) 17-03-17 22:35:55.378 -07 000000569 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.847 mm, average velocity = 2.133 mm/sec 17-03-17 22:35:56.328 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 22:35:56.328 -07 000000459 INF: FPGA: Recv YRDPOS 151568 17-03-17 22:35:56.338 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:56.338 -07 000000569 INF: Y Motor: Encoder = 151568 = motor step 118412.5 = 74.0078 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 22:35:56.348 -07 000000569 INF: Y Motor: After move to 74.022606, error = -0.014793, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm 17-03-17 22:35:56.348 -07 000000569 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 1 counts (0.000 mm) 17-03-17 22:35:56.348 -07 000000569 INF: Y Motor: Moved to 74.0078 after 1432 ms (table move) 17-03-17 22:35:56.358 -07 000000480 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173014 mm (DAC = 37795) 17-03-17 22:35:56.358 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:56.358 -07 000000415 INF: FPGA: Recv ZSGSRD 36227 17-03-17 22:35:56.368 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-17 22:35:56.368 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:56.368 -07 000000547 INF: FPGA: Recv ZSGSRD 36223 17-03-17 22:35:56.378 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:56.378 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:56.378 -07 000000569 INF: FPGA: Recv ZSGSRD 36223 17-03-17 22:35:56.388 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:56.388 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:56.388 -07 000000551 INF: FPGA: Recv ZSGSRD 36225 17-03-17 22:35:56.398 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:56.398 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:56.398 -07 000000502 INF: FPGA: Recv ZSGSRD 36223 17-03-17 22:35:56.408 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:56.408 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:56.408 -07 000000608 INF: FPGA: Recv ZSGSRD 36227 17-03-17 22:35:56.418 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:56.418 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:56.418 -07 000000462 INF: FPGA: Recv ZSGSRD 36214 17-03-17 22:35:56.428 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:56.428 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:56.428 -07 000000627 INF: FPGA: Recv ZSGSRD 36220 17-03-17 22:35:56.438 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:56.438 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:56.438 -07 000000502 INF: FPGA: Recv ZSGSRD 36220 17-03-17 22:35:56.448 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:56.448 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:56.448 -07 000000593 INF: FPGA: Recv ZSGSRD 36226 17-03-17 22:35:56.458 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:56.458 -07 000000480 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 22:35:56.458 -07 000000569 INF: FPGA: Recv ZPIEZORD 32450 17-03-17 22:35:56.468 -07 000000480 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:56.468 -07 000000480 INF: Z Motor: Piezo is near 49.3 V (nominally 0 to 100 V), expect near 57.7 V, since DAC is at 5.767 V. Piezo Error = -8.3 V. 17-03-17 22:35:56.468 -07 000000480 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.0 um, Read 10 ADC samples: Avg = 36223 (-172.1 uncal um), Error = 0.9 uncal um, Median = 36223 (-172.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36214 (-172.1 uncal um), Max = 36227 (-172.2 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um) 17-03-17 22:35:56.468 -07 000000480 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36223, posNoise = 4, negNoise = 9 17-03-17 22:35:56.468 -07 000000480 INF: Z Motor: After move to -0.173014, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 22:35:56.468 -07 000000480 INF: Z Motor: Settle wait time = 1435 ms, measure time = 108 ms (allowed 150 ms), total time = 1543 ms 17-03-17 22:35:56.468 -07 000000480 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms 17-03-17 22:35:56.518 -07 000000480 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1596 ms 17-03-17 22:35:56.518 -07 000000480 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-17 22:35:56.528 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 22:35:56.528 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 22:35:56.528 -07 000000541 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 22:35:56.528 -07 000000623 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 22:35:56.528 -07 000000482 INF: Disarm and arm camera sensor 0: ROITrigger start. 17-03-17 22:35:56.528 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 22:35:56.528 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 22:35:56.528 -07 000000482 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start. 17-03-17 22:35:56.538 -07 000000482 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms. 17-03-17 22:35:56.538 -07 000000482 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start. 17-03-17 22:35:56.538 -07 000000482 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms. 17-03-17 22:35:56.538 -07 000000482 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms. 17-03-17 22:35:56.548 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera] 17-03-17 22:35:56.588 -07 000000458 INF: FPGA: Recv @CAMSNAP turning led on 40 17-03-17 22:35:56.788 -07 000000627 INF: FPGA: Recv @CAMSNAP img rdy 240 17-03-17 22:35:56.788 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240 17-03-17 22:35:56.788 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start. 17-03-17 22:35:56.798 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start. 17-03-17 22:35:56.828 -07 000000458 INF: FPGA: Recv @CAMSNAP 280 17-03-17 22:35:56.828 -07 000000576 INF: FPGA: Recv CAMSNAP 17-03-17 22:35:56.828 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 285 ms overall 17-03-17 22:35:56.908 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms. 17-03-17 22:35:56.908 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-17 22:35:56.908 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms. 17-03-17 22:35:56.908 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms. 17-03-17 22:35:56.928 -07 000000547 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 22:35:56.928 -07 000000623 INF: Autofocus start 17-03-17 22:35:56.928 -07 000000623 INF: MeasureProfile start 17-03-17 22:35:56.928 -07 000000415 INF: FPGA: Recv FOCMRRCUR 17-03-17 22:35:56.938 -07 000000547 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-17 22:35:56.938 -07 000000547 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror] 17-03-17 22:35:56.938 -07 000000623 INF: MeasureProfile done 17-03-17 22:35:56.938 -07 000000623 INF: X=0 Z correction [um]=-0.0713522 17-03-17 22:35:56.938 -07 000000623 INF: Autofocus finished 17-03-17 22:35:56.988 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 22:35:56.988 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 64. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1026, R2=1057, Total=2083. Warn if over 250 bubbles per interval. 17-03-17 22:35:57.138 -07 000000459 INF: FPGA: Recv FOCMRRIMG 17-03-17 22:35:57.138 -07 000000547 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall 17-03-17 22:35:57.138 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.0078125, Z-position -0.173027588422142. ---------- 17-03-17 22:35:57.138 -07 000000610 INF: Cycle 65 Tile 18 Exposure Settings A 455 G 219 T 219 C 455 17-03-17 22:35:57.148 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36292, sync = True, waitForSettling = True) 17-03-17 22:35:57.148 -07 000000610 INF: Z Motor: Moving to -0.166134 mm, started at -0.173028 mm, distance = 6.89 um 17-03-17 22:35:57.148 -07 000000610 INF: FPGA: Xmit ZDACW 36292\n [Z Motor] 17-03-17 22:35:57.148 -07 000000541 INF: FPGA: Recv ZDACW 17-03-17 22:35:57.158 -07 000000610 INF: FPGA: 'ZDACW 36292' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:57.158 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 22:35:57.158 -07 000000382 INF: FPGA: Recv ZDACR 36292 17-03-17 22:35:57.168 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:57.168 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-17 22:35:57.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:57.318 -07 000000593 INF: FPGA: Recv ZSGSRD 35157 17-03-17 22:35:57.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 22:35:57.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:57.328 -07 000000480 INF: FPGA: Recv ZSGSRD 35149 17-03-17 22:35:57.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:57.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:57.338 -07 000000482 INF: FPGA: Recv ZSGSRD 35150 17-03-17 22:35:57.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:57.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:57.348 -07 000000541 INF: FPGA: Recv ZSGSRD 35151 17-03-17 22:35:57.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:57.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:57.358 -07 000000382 INF: FPGA: Recv ZSGSRD 35160 17-03-17 22:35:57.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:57.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:57.368 -07 000000608 INF: FPGA: Recv ZSGSRD 35151 17-03-17 22:35:57.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 2 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:57.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:57.378 -07 000000569 INF: FPGA: Recv ZSGSRD 35146 17-03-17 22:35:57.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:57.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:57.388 -07 000000576 INF: FPGA: Recv ZSGSRD 35154 17-03-17 22:35:57.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:57.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:57.398 -07 000000502 INF: FPGA: Recv ZSGSRD 35156 17-03-17 22:35:57.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:57.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:35:57.408 -07 000000627 INF: FPGA: Recv ZSGSRD 35156 17-03-17 22:35:57.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:57.418 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 22:35:57.418 -07 000000623 INF: FPGA: Recv ZPIEZORD 31018 17-03-17 22:35:57.428 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:35:57.428 -07 000000610 INF: Z Motor: Piezo is near 46.3 V (nominally 0 to 100 V), expect near 55.4 V, since DAC is at 5.538 V. Piezo Error = -9.1 V. 17-03-17 22:35:57.428 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.1 um, Read 10 ADC samples: Avg = 35153 (-165.3 uncal um), Error = 0.8 uncal um, Median = 35152 (-165.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 35146 (-165.2 uncal um), Max = 35160 (-165.3 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um) 17-03-17 22:35:57.428 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35153, posNoise = 7, negNoise = 7 17-03-17 22:35:57.428 -07 000000610 INF: Z Motor: After move to -0.166134, error = -0.000020, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 22:35:57.428 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms) 17-03-17 22:35:57.428 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 22:35:57.428 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 22:35:57.428 -07 000000482 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 22:35:57.428 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 22:35:57.428 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-17 22:35:57.428 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 22:35:57.428 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms. 17-03-17 22:35:57.428 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-17 22:35:57.428 -07 000000547 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-17 22:35:57.428 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-17 22:35:57.438 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms. 17-03-17 22:35:57.438 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-17 22:35:57.438 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 3 ms. 17-03-17 22:35:57.438 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-17 22:35:57.438 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms. 17-03-17 22:35:57.438 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-17 22:35:57.438 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms. 17-03-17 22:35:57.448 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms. 17-03-17 22:35:57.448 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms. 17-03-17 22:35:57.448 -07 000000547 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 18 ms. 17-03-17 22:35:57.448 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 455 455 219 219 36469 150\n [Camera] 17-03-17 22:35:57.648 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-17 22:35:58.108 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 649 17-03-17 22:35:58.108 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 649 17-03-17 22:35:58.108 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 22:35:58.108 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 649 17-03-17 22:35:58.108 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 649 17-03-17 22:35:58.108 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 22:35:58.108 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 22:35:58.108 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start. 17-03-17 22:35:58.118 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 22:35:58.118 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 1406045800, 0x0, 418435064) start. 17-03-17 22:35:58.298 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36469 840 17-03-17 22:35:58.448 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP turning grn on 990 17-03-17 22:35:58.498 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 389 ms. 17-03-17 22:35:58.498 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 390 ms. 17-03-17 22:35:58.498 -07 000000462 INF: Camera: CopyActivePixFullImage start. 17-03-17 22:35:58.508 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 1406045800, 0x0, 418435064) end. Duration was 387 ms. 17-03-17 22:35:58.508 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 387 ms. 17-03-17 22:35:58.508 -07 000000593 INF: Camera: CopyActivePixFullImage start. 17-03-17 22:35:58.508 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-17 22:35:58.508 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms. 17-03-17 22:35:58.508 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-17 22:35:58.518 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 404 ms. 17-03-17 22:35:58.668 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1209 17-03-17 22:35:58.668 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1209 17-03-17 22:35:58.668 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 22:35:58.668 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1209 17-03-17 22:35:58.668 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1209 17-03-17 22:35:58.668 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 22:35:58.678 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 22:35:58.678 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start. 17-03-17 22:35:58.678 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 22:35:58.678 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) start. 17-03-17 22:35:58.858 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP 1402 17-03-17 22:35:58.858 -07 000000593 INF: FPGA: Recv CAMDBLSNAP 17-03-17 22:35:58.858 -07 000000610 INF: FPGA: 'CAMDBLSNAP 455 455 219 219 36469 150' command took 2 ms to send, 1405 ms to get response, and 1408 ms overall 17-03-17 22:35:58.858 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880 17-03-17 22:35:58.858 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.0078125, Z-Position -0.166153681430458. ------ 17-03-17 22:35:58.858 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 22:35:58.858 -07 000000459 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.17256 mm 17-03-17 22:35:58.868 -07 000000459 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-17 22:35:58.868 -07 000000462 INF: FPGA: Recv FOCMRRCUR 17-03-17 22:35:58.868 -07 000000382 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True) 17-03-17 22:35:58.868 -07 000000551 INF: Z Motor: Entering MoveAbsStepped (DAC = 37695, sync = True, waitForSettling = False) 17-03-17 22:35:58.868 -07 000000551 INF: Z Motor: Moving to -0.172557 mm, started at -0.166154 mm, distance = -6.40 um 17-03-17 22:35:58.868 -07 000000382 INF: Y Motor: Moving to 74.8526 mm, started at 74.0078 mm, delta = 0.8448 mm 17-03-17 22:35:58.878 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 22:35:58.878 -07 000000551 INF: FPGA: Xmit ZDACW 37695\n [Z Motor] 17-03-17 22:35:58.878 -07 000000486 INF: FPGA: Recv ZDACW 17-03-17 22:35:58.888 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 22:35:58.888 -07 000000551 INF: FPGA: 'ZDACW 37695' command took 0 ms to send, 0 ms to get response, and 16 ms overall 17-03-17 22:35:58.888 -07 000000415 INF: FPGA: Recv YRDPOS 151568 17-03-17 22:35:58.898 -07 000000608 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror] 17-03-17 22:35:58.898 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 26 ms overall 17-03-17 22:35:58.898 -07 000000382 INF: Y Motor: Encoder = 151568 = motor step 118412.5 = 74.0078 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 22:35:58.898 -07 000000382 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-17 22:35:58.898 -07 000000382 INF: Y Motor: Moving 1352 steps-31 17-03-17 22:35:58.908 -07 000000551 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 22:35:58.908 -07 000000576 INF: FPGA: Recv ZDACR 37695 17-03-17 22:35:58.918 -07 000000551 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall 17-03-17 22:35:58.918 -07 000000551 INF: Z Motor: MoveAbsStepped took 46 ms (did NOT wait for settling yet)) 17-03-17 22:35:58.918 -07 000000382 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-17 22:35:59.058 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) end. Duration was 382 ms. 17-03-17 22:35:59.058 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms. 17-03-17 22:35:59.058 -07 000000502 INF: Camera: CopyActivePixFullImage start. 17-03-17 22:35:59.058 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 386 ms. 17-03-17 22:35:59.058 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms. 17-03-17 22:35:59.058 -07 000000623 INF: Camera: CopyActivePixFullImage start. 17-03-17 22:35:59.058 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 22:35:59.068 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms. 17-03-17 22:35:59.068 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms. 17-03-17 22:35:59.068 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms. 17-03-17 22:35:59.098 -07 000000576 INF: FPGA: Recv FOCMRRFOC 17-03-17 22:35:59.098 -07 000000608 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall 17-03-17 22:35:59.258 -07 000000623 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 65, FrontChillerTemperature: 4.047997, 17-03-17 22:35:59.288 -07 000000415 INF: FPGA: Recv YMVTILE 17-03-17 22:35:59.288 -07 000000382 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 396 ms overall 17-03-17 22:35:59.318 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 22:35:59.318 -07 000000593 INF: FPGA: Recv YRDPOS 153255 17-03-17 22:35:59.328 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall 17-03-17 22:35:59.328 -07 000000382 INF: Y Motor: Encoder = 153255 = motor step 119730.5 = 74.8315 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 22:35:59.328 -07 000000382 INF: Y Motor: Position error before settling (table move) = -43 encoder counts (-0.021 mm) 17-03-17 22:35:59.328 -07 000000382 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 396 ms, distance = 0.845 mm, average velocity = 2.133 mm/sec 17-03-17 22:36:00.278 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 22:36:00.278 -07 000000415 INF: FPGA: Recv YRDPOS 153255 17-03-17 22:36:00.288 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:00.288 -07 000000382 INF: Y Motor: Encoder = 153255 = motor step 119730.5 = 74.8315 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 22:36:00.298 -07 000000382 INF: Y Motor: After move to 74.852608, error = -0.021065, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm 17-03-17 22:36:00.298 -07 000000382 INF: Y Motor: Position error after settling (table move) = -43 encoder counts (-0.021 mm), Delta during settling = 0 counts (0.000 mm) 17-03-17 22:36:00.298 -07 000000382 INF: Y Motor: Moved to 74.8315 after 1434 ms (table move) 17-03-17 22:36:00.308 -07 000000459 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172557 mm (DAC = 37695) 17-03-17 22:36:00.308 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:00.308 -07 000000593 INF: FPGA: Recv ZSGSRD 36158 17-03-17 22:36:00.318 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall 17-03-17 22:36:00.318 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:00.318 -07 000000415 INF: FPGA: Recv ZSGSRD 36142 17-03-17 22:36:00.328 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:00.328 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:00.328 -07 000000623 INF: FPGA: Recv ZSGSRD 36149 17-03-17 22:36:00.338 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:00.338 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:00.338 -07 000000551 INF: FPGA: Recv ZSGSRD 36153 17-03-17 22:36:00.348 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:00.348 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:00.348 -07 000000486 INF: FPGA: Recv ZSGSRD 36152 17-03-17 22:36:00.358 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:00.358 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:00.358 -07 000000608 INF: FPGA: Recv ZSGSRD 36151 17-03-17 22:36:00.368 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:00.368 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:00.368 -07 000000593 INF: FPGA: Recv ZSGSRD 36153 17-03-17 22:36:00.378 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:00.378 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:00.378 -07 000000627 INF: FPGA: Recv ZSGSRD 36153 17-03-17 22:36:00.388 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:00.388 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:00.388 -07 000000608 INF: FPGA: Recv ZSGSRD 36143 17-03-17 22:36:00.398 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:00.398 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:00.398 -07 000000458 INF: FPGA: Recv ZSGSRD 36144 17-03-17 22:36:00.408 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:00.408 -07 000000459 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 22:36:00.408 -07 000000502 INF: FPGA: Recv ZPIEZORD 32343 17-03-17 22:36:00.418 -07 000000459 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:00.418 -07 000000459 INF: Z Motor: Piezo is near 49.1 V (nominally 0 to 100 V), expect near 57.5 V, since DAC is at 5.752 V. Piezo Error = -8.4 V. 17-03-17 22:36:00.418 -07 000000459 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.6 um, Read 10 ADC samples: Avg = 36150 (-171.7 uncal um), Error = 0.9 uncal um, Median = 36152 (-171.7 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 36142 (-171.6 uncal um), Max = 36158 (-171.7 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um) 17-03-17 22:36:00.418 -07 000000459 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36150, posNoise = 8, negNoise = 8 17-03-17 22:36:00.418 -07 000000459 INF: Z Motor: After move to -0.172557, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 22:36:00.418 -07 000000459 INF: Z Motor: Settle wait time = 1439 ms, measure time = 107 ms (allowed 150 ms), total time = 1546 ms 17-03-17 22:36:00.418 -07 000000459 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms 17-03-17 22:36:00.468 -07 000000459 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1600 ms 17-03-17 22:36:00.468 -07 000000459 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-17 22:36:00.468 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 22:36:00.468 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 22:36:00.468 -07 000000623 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 22:36:00.468 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger start. 17-03-17 22:36:00.468 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 22:36:00.468 -07 000000415 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 22:36:00.468 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms. 17-03-17 22:36:00.468 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start. 17-03-17 22:36:00.478 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms. 17-03-17 22:36:00.478 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start. 17-03-17 22:36:00.478 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms. 17-03-17 22:36:00.478 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms. 17-03-17 22:36:00.488 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera] 17-03-17 22:36:00.528 -07 000000382 INF: FPGA: Recv @CAMSNAP turning led on 40 17-03-17 22:36:00.728 -07 000000462 INF: FPGA: Recv @CAMSNAP img rdy 240 17-03-17 22:36:00.728 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240 17-03-17 22:36:00.728 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start. 17-03-17 22:36:00.728 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 656674232, 0x0, 559484976) start. 17-03-17 22:36:00.768 -07 000000382 INF: FPGA: Recv @CAMSNAP 280 17-03-17 22:36:00.768 -07 000000569 INF: FPGA: Recv CAMSNAP 17-03-17 22:36:00.768 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 285 ms overall 17-03-17 22:36:00.848 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 656674232, 0x0, 559484976) end. Duration was 116 ms. 17-03-17 22:36:00.848 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-17 22:36:00.848 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms. 17-03-17 22:36:00.848 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms. 17-03-17 22:36:00.868 -07 000000486 INF: Autofocus start 17-03-17 22:36:00.868 -07 000000486 INF: MeasureProfile start 17-03-17 22:36:00.868 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 22:36:00.868 -07 000000569 INF: FPGA: Recv FOCMRRCUR 17-03-17 22:36:00.878 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-17 22:36:00.878 -07 000000502 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror] 17-03-17 22:36:00.878 -07 000000486 INF: MeasureProfile done 17-03-17 22:36:00.878 -07 000000486 INF: X=48 Z correction [um]=0.1739867 17-03-17 22:36:00.878 -07 000000486 INF: Autofocus finished 17-03-17 22:36:01.078 -07 000000541 INF: FPGA: Recv FOCMRRIMG 17-03-17 22:36:01.078 -07 000000502 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall 17-03-17 22:36:01.078 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83154296875, Z-position -0.172558620935794. ---------- 17-03-17 22:36:01.088 -07 000000610 INF: Cycle 65 Tile 19 Exposure Settings A 455 G 219 T 219 C 455 17-03-17 22:36:01.088 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36246, sync = True, waitForSettling = True) 17-03-17 22:36:01.088 -07 000000610 INF: Z Motor: Moving to -0.165924 mm, started at -0.172559 mm, distance = 6.64 um 17-03-17 22:36:01.088 -07 000000610 INF: FPGA: Xmit ZDACW 36246\n [Z Motor] 17-03-17 22:36:01.088 -07 000000551 INF: FPGA: Recv ZDACW 17-03-17 22:36:01.098 -07 000000610 INF: FPGA: 'ZDACW 36246' command took 0 ms to send, 0 ms to get response, and 7 ms overall 17-03-17 22:36:01.098 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 22:36:01.098 -07 000000480 INF: FPGA: Recv ZDACR 36246 17-03-17 22:36:01.108 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:01.108 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-17 22:36:01.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:01.258 -07 000000547 INF: FPGA: Recv ZSGSRD 35118 17-03-17 22:36:01.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 22:36:01.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:01.268 -07 000000482 INF: FPGA: Recv ZSGSRD 35118 17-03-17 22:36:01.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 3 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:01.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:01.278 -07 000000458 INF: FPGA: Recv ZSGSRD 35122 17-03-17 22:36:01.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:01.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:01.288 -07 000000551 INF: FPGA: Recv ZSGSRD 35122 17-03-17 22:36:01.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:01.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:01.298 -07 000000623 INF: FPGA: Recv ZSGSRD 35116 17-03-17 22:36:01.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:01.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:01.308 -07 000000541 INF: FPGA: Recv ZSGSRD 35122 17-03-17 22:36:01.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:01.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:01.318 -07 000000486 INF: FPGA: Recv ZSGSRD 35116 17-03-17 22:36:01.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:01.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:01.328 -07 000000458 INF: FPGA: Recv ZSGSRD 35117 17-03-17 22:36:01.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:01.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:01.338 -07 000000551 INF: FPGA: Recv ZSGSRD 35120 17-03-17 22:36:01.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:01.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:01.348 -07 000000547 INF: FPGA: Recv ZSGSRD 35120 17-03-17 22:36:01.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:01.358 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 22:36:01.358 -07 000000541 INF: FPGA: Recv ZPIEZORD 31004 17-03-17 22:36:01.368 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:01.368 -07 000000610 INF: Z Motor: Piezo is near 46.2 V (nominally 0 to 100 V), expect near 55.3 V, since DAC is at 5.531 V. Piezo Error = -9.1 V. 17-03-17 22:36:01.368 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -165.9 um, Read 10 ADC samples: Avg = 35119 (-165.1 uncal um), Error = 0.9 uncal um, Median = 35119 (-165.1 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 35116 (-165.1 uncal um), Max = 35122 (-165.1 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um) 17-03-17 22:36:01.368 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35119, posNoise = 3, negNoise = 3 17-03-17 22:36:01.368 -07 000000610 INF: Z Motor: After move to -0.165924, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 22:36:01.368 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms) 17-03-17 22:36:01.368 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 22:36:01.368 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 22:36:01.368 -07 000000415 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-17 22:36:01.368 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 22:36:01.368 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 22:36:01.368 -07 000000459 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 22:36:01.368 -07 000000551 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-17 22:36:01.368 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-17 22:36:01.368 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 22:36:01.368 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-17 22:36:01.368 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms. 17-03-17 22:36:01.368 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-17 22:36:01.378 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms. 17-03-17 22:36:01.378 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-17 22:36:01.378 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms. 17-03-17 22:36:01.378 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-17 22:36:01.388 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms. 17-03-17 22:36:01.388 -07 000000415 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms. 17-03-17 22:36:01.388 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms. 17-03-17 22:36:01.388 -07 000000551 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms. 17-03-17 22:36:01.398 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 455 455 219 219 36423 150\n [Camera] 17-03-17 22:36:01.598 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-17 22:36:01.988 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 22:36:01.988 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 64. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1026, R2=1057, Total=2083. Warn if over 250 bubbles per interval. 17-03-17 22:36:02.048 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 647 17-03-17 22:36:02.048 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 647 17-03-17 22:36:02.048 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 22:36:02.048 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 22:36:02.048 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start. 17-03-17 22:36:02.048 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 647 17-03-17 22:36:02.048 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 647 17-03-17 22:36:02.048 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 22:36:02.048 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 22:36:02.048 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start. 17-03-17 22:36:02.238 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36423 840 17-03-17 22:36:02.388 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning grn on 990 17-03-17 22:36:02.438 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 391 ms. 17-03-17 22:36:02.438 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms. 17-03-17 22:36:02.438 -07 000000551 INF: Camera: CopyActivePixFullImage start. 17-03-17 22:36:02.438 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 389 ms. 17-03-17 22:36:02.438 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 389 ms. 17-03-17 22:36:02.438 -07 000000482 INF: Camera: CopyActivePixFullImage start. 17-03-17 22:36:02.448 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-17 22:36:02.448 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 397 ms. 17-03-17 22:36:02.448 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-17 22:36:02.458 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 401 ms. 17-03-17 22:36:02.608 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1209 17-03-17 22:36:02.608 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1209 17-03-17 22:36:02.608 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 22:36:02.608 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 22:36:02.608 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start. 17-03-17 22:36:02.618 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1209 17-03-17 22:36:02.618 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1209 17-03-17 22:36:02.618 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 22:36:02.618 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 22:36:02.618 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start. 17-03-17 22:36:02.798 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP 1401 17-03-17 22:36:02.808 -07 000000382 INF: FPGA: Recv CAMDBLSNAP 17-03-17 22:36:02.808 -07 000000610 INF: FPGA: 'CAMDBLSNAP 455 455 219 219 36423 150' command took 2 ms to send, 1402 ms to get response, and 1411 ms overall 17-03-17 22:36:03.018 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 404 ms. 17-03-17 22:36:03.018 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 405 ms. 17-03-17 22:36:03.018 -07 000000576 INF: Camera: CopyActivePixFullImage start. 17-03-17 22:36:03.018 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 404 ms. 17-03-17 22:36:03.018 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 404 ms. 17-03-17 22:36:03.018 -07 000000458 INF: Camera: CopyActivePixFullImage start. 17-03-17 22:36:03.028 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 22:36:03.028 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms. 17-03-17 22:36:03.028 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 413 ms. 17-03-17 22:36:03.028 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start. 17-03-17 22:36:03.028 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms. 17-03-17 22:36:03.178 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 149 ms. 17-03-17 22:36:03.178 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start. 17-03-17 22:36:03.218 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 43 ms. 17-03-17 22:36:03.218 -07 000000610 INF: Move compensator for Bottom-surface imaging. 17-03-17 22:36:03.218 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator] 17-03-17 22:36:03.228 -07 000000415 INF: FPGA: Recv EMCUR 17-03-17 22:36:03.228 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 2 ms to get response, and 4 ms overall 17-03-17 22:36:03.228 -07 000000610 INF: FPGA: Xmit EMIN 20 40\n [Compensator] 17-03-17 22:36:03.728 -07 000000569 INF: FPGA: Recv EMIN 17-03-17 22:36:03.728 -07 000000610 INF: FPGA: 'EMIN 20 40' command took 0 ms to send, 496 ms to get response, and 502 ms overall 17-03-17 22:36:03.728 -07 000000610 INF: FPGA: Xmit EMCUR 60\n [Compensator] 17-03-17 22:36:03.728 -07 000000480 INF: FPGA: Recv EMCUR 17-03-17 22:36:03.738 -07 000000610 INF: FPGA: 'EMCUR 60' command took 0 ms to send, 0 ms to get response, and 3 ms overall 17-03-17 22:36:03.738 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503 17-03-17 22:36:03.738 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 74.83154296875, Z-Position -0.165935258217638. ------ 17-03-17 22:36:03.738 -07 000000623 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 22:36:03.738 -07 000000459 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.14030 mm 17-03-17 22:36:03.738 -07 000000459 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-17 22:36:03.738 -07 000000547 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True) 17-03-17 22:36:03.738 -07 000000547 INF: Y Motor: Moving to 59.9126 mm, started at 74.8315 mm, delta = -14.9189 mm 17-03-17 22:36:03.748 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 22:36:03.748 -07 000000480 INF: FPGA: Recv FOCMRRCUR 17-03-17 22:36:03.748 -07 000000623 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall 17-03-17 22:36:03.748 -07 000000551 INF: Z Motor: Entering MoveAbsStepped (DAC = 30648, sync = True, waitForSettling = False) 17-03-17 22:36:03.748 -07 000000551 INF: Z Motor: Moving to -0.140298 mm, started at -0.165935 mm, distance = 25.64 um 17-03-17 22:36:03.748 -07 000000502 INF: FPGA: Recv YRDPOS 153256 17-03-17 22:36:03.758 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall 17-03-17 22:36:03.758 -07 000000547 INF: Y Motor: Encoder = 153256 = motor step 119731.3 = 74.8320 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 22:36:03.758 -07 000000551 INF: FPGA: Xmit ZDACW 30648\n [Z Motor] 17-03-17 22:36:03.758 -07 000000382 INF: FPGA: Recv ZDACW 17-03-17 22:36:03.758 -07 000000547 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = -14.9400 mm (-23904.0 steps). UsingTableMove = False 17-03-17 22:36:03.758 -07 000000547 INF: Y Motor: Moving to 122701 encoder counts 17-03-17 22:36:03.768 -07 000000551 INF: FPGA: 'ZDACW 30648' command took 0 ms to send, 0 ms to get response, and 17 ms overall 17-03-17 22:36:03.768 -07 000000623 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror] 17-03-17 22:36:03.778 -07 000000547 INF: FPGA: Xmit YMVTO 122701\n [Y Motor] 17-03-17 22:36:03.788 -07 000000551 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 22:36:03.788 -07 000000576 INF: FPGA: Recv ZDACR 30648 17-03-17 22:36:03.798 -07 000000551 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall 17-03-17 22:36:03.798 -07 000000551 INF: Z Motor: MoveAbsStepped took 48 ms (did NOT wait for settling yet)) 17-03-17 22:36:03.968 -07 000000482 INF: FPGA: Recv FOCMRRFOC 17-03-17 22:36:03.968 -07 000000623 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 221 ms overall 17-03-17 22:36:04.628 -07 000000458 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 65, FrontChillerTemperature: 4.0344, 17-03-17 22:36:05.398 -07 000000576 INF: FPGA: Recv YMVTO 122703 23903 17-03-17 22:36:05.398 -07 000000547 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1618 ms to get response, and 1643 ms overall 17-03-17 22:36:05.398 -07 000000547 INF: Y Motor: Position error before settling = 2 encoder counts (0.001 mm) 17-03-17 22:36:05.398 -07 000000547 INF: Y Motor: To move from 74.832 to 59.913 (-14.919 mm) should take 23871 steps, but required 23903 steps (14.939 mm). Slippage = 0.020 mm (0.00%). 17-03-17 22:36:05.398 -07 000000547 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1643 ms, distance = 14.919 mm, average velocity = 9.080 mm/sec 17-03-17 22:36:06.988 -07 000000486 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 22:36:06.988 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 64. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1026, R2=1057, Total=2083. Warn if over 250 bubbles per interval. 17-03-17 22:36:08.248 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 22:36:08.248 -07 000000576 INF: FPGA: Recv YRDPOS 122698 17-03-17 22:36:08.258 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 22:36:08.258 -07 000000547 INF: Y Motor: Encoder = 122698 = motor step 95857.8 = 59.9111 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 22:36:08.288 -07 000000547 INF: Y Motor: After move to 59.912609, error = -0.001476, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm 17-03-17 22:36:08.288 -07 000000547 INF: Y Motor: Position error after settling = -3 encoder counts (-0.001 mm), Delta during settling = -5 counts (-0.002 mm) 17-03-17 22:36:08.288 -07 000000547 INF: Y Motor: Moved to 59.9111 after 4543 ms 17-03-17 22:36:08.288 -07 000000459 INF: Z Motor: EndOfMoveAbsStepped: target = -0.140298 mm (DAC = 30648) 17-03-17 22:36:08.288 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:08.288 -07 000000458 INF: FPGA: Recv ZSGSRD 31128 17-03-17 22:36:08.298 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall 17-03-17 22:36:08.298 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:08.298 -07 000000576 INF: FPGA: Recv ZSGSRD 31135 17-03-17 22:36:08.308 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:08.308 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:08.308 -07 000000576 INF: FPGA: Recv ZSGSRD 31131 17-03-17 22:36:08.318 -07 000000459 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:08.318 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:08.318 -07 000000569 INF: FPGA: Recv ZSGSRD 31128 17-03-17 22:36:08.328 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:08.328 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:08.328 -07 000000480 INF: FPGA: Recv ZSGSRD 31126 17-03-17 22:36:08.338 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:08.338 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:08.338 -07 000000482 INF: FPGA: Recv ZSGSRD 31137 17-03-17 22:36:08.348 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:08.348 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:08.348 -07 000000541 INF: FPGA: Recv ZSGSRD 31134 17-03-17 22:36:08.358 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:08.358 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:08.358 -07 000000608 INF: FPGA: Recv ZSGSRD 31129 17-03-17 22:36:08.368 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:08.368 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:08.368 -07 000000576 INF: FPGA: Recv ZSGSRD 31134 17-03-17 22:36:08.378 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:08.378 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:08.378 -07 000000627 INF: FPGA: Recv ZSGSRD 31130 17-03-17 22:36:08.388 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:08.388 -07 000000459 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 22:36:08.388 -07 000000502 INF: FPGA: Recv ZPIEZORD 26795 17-03-17 22:36:08.398 -07 000000459 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:08.398 -07 000000459 INF: Z Motor: Piezo is near 37.2 V (nominally 0 to 100 V), expect near 46.8 V, since DAC is at 4.677 V. Piezo Error = -9.5 V. 17-03-17 22:36:08.398 -07 000000459 INF: Z Motor: ReadAdcAverage: Commanded Z = -140.3 um, Read 10 ADC samples: Avg = 31131 (-139.5 uncal um), Error = 0.8 uncal um, Median = 31130 (-139.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 31126 (-139.5 uncal um), Max = 31137 (-139.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um) 17-03-17 22:36:08.398 -07 000000459 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31131, posNoise = 6, negNoise = 5 17-03-17 22:36:08.398 -07 000000459 INF: Z Motor: After move to -0.140298, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 22:36:08.398 -07 000000459 INF: Z Motor: Settle wait time = 4544 ms, measure time = 104 ms (allowed 150 ms), total time = 4648 ms 17-03-17 22:36:08.398 -07 000000459 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms 17-03-17 22:36:08.448 -07 000000459 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4703 ms 17-03-17 22:36:08.448 -07 000000459 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-17 22:36:08.448 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 22:36:08.448 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 22:36:08.448 -07 000000482 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 22:36:08.448 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 22:36:08.448 -07 000000547 INF: Disarm and arm camera sensor 0: ROITrigger start. 17-03-17 22:36:08.448 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 22:36:08.448 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms. 17-03-17 22:36:08.448 -07 000000547 INF: Camera: sBCa_SetPowerMode(785074288, 1) start. 17-03-17 22:36:08.468 -07 000000547 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 20 ms. 17-03-17 22:36:08.468 -07 000000547 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start. 17-03-17 22:36:08.478 -07 000000547 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms. 17-03-17 22:36:08.478 -07 000000547 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start. 17-03-17 22:36:08.478 -07 000000547 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms. 17-03-17 22:36:08.478 -07 000000547 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 31 ms. 17-03-17 22:36:08.488 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera] 17-03-17 22:36:08.528 -07 000000541 INF: FPGA: Recv @CAMSNAP turning led on 40 17-03-17 22:36:08.728 -07 000000462 INF: FPGA: Recv @CAMSNAP img rdy 240 17-03-17 22:36:08.728 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240 17-03-17 22:36:08.728 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start. 17-03-17 22:36:08.728 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start. 17-03-17 22:36:08.768 -07 000000547 INF: FPGA: Recv @CAMSNAP 280 17-03-17 22:36:08.768 -07 000000502 INF: FPGA: Recv CAMSNAP 17-03-17 22:36:08.768 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 275 ms to get response, and 284 ms overall 17-03-17 22:36:08.848 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 116 ms. 17-03-17 22:36:08.848 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-17 22:36:08.848 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms. 17-03-17 22:36:08.848 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms. 17-03-17 22:36:08.868 -07 000000627 INF: Image SNR check: start 17-03-17 22:36:08.868 -07 000000486 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 22:36:08.868 -07 000000502 INF: FPGA: Recv FOCMRRCUR 17-03-17 22:36:08.878 -07 000000486 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall 17-03-17 22:36:08.878 -07 000000486 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror] 17-03-17 22:36:08.878 -07 000000627 INF: Image SNR check: pass [peak (Max-Min)=55.08] 17-03-17 22:36:08.878 -07 000000627 INF: Autofocus start 17-03-17 22:36:08.878 -07 000000627 INF: MeasureProfile start 17-03-17 22:36:08.898 -07 000000627 INF: MeasureProfile done 17-03-17 22:36:08.898 -07 000000627 INF: X=10 Z correction [um]=0.02415557 17-03-17 22:36:08.898 -07 000000627 INF: Autofocus finished 17-03-17 22:36:09.078 -07 000000547 INF: FPGA: Recv FOCMRRIMG 17-03-17 22:36:09.078 -07 000000486 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall 17-03-17 22:36:09.078 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.9111328125, Z-position -0.140315500196295. ---------- 17-03-17 22:36:09.078 -07 000000610 INF: Cycle 65 Tile 1 Exposure Settings A 455 G 219 T 219 C 455 17-03-17 22:36:09.088 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 29165, sync = True, waitForSettling = True) 17-03-17 22:36:09.088 -07 000000610 INF: Z Motor: Moving to -0.133509 mm, started at -0.140316 mm, distance = 6.81 um 17-03-17 22:36:09.088 -07 000000610 INF: FPGA: Xmit ZDACW 29165\n [Z Motor] 17-03-17 22:36:09.088 -07 000000551 INF: FPGA: Recv ZDACW 17-03-17 22:36:09.098 -07 000000610 INF: FPGA: 'ZDACW 29165' command took 0 ms to send, 0 ms to get response, and 8 ms overall 17-03-17 22:36:09.098 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 22:36:09.098 -07 000000541 INF: FPGA: Recv ZDACR 29165 17-03-17 22:36:09.108 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:09.108 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-17 22:36:09.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:09.258 -07 000000547 INF: FPGA: Recv ZSGSRD 30066 17-03-17 22:36:09.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:09.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:09.268 -07 000000627 INF: FPGA: Recv ZSGSRD 30077 17-03-17 22:36:09.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:09.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:09.278 -07 000000382 INF: FPGA: Recv ZSGSRD 30070 17-03-17 22:36:09.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:09.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:09.288 -07 000000502 INF: FPGA: Recv ZSGSRD 30069 17-03-17 22:36:09.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:09.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:09.298 -07 000000480 INF: FPGA: Recv ZSGSRD 30071 17-03-17 22:36:09.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:09.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:09.308 -07 000000608 INF: FPGA: Recv ZSGSRD 30078 17-03-17 22:36:09.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:09.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:09.318 -07 000000627 INF: FPGA: Recv ZSGSRD 30075 17-03-17 22:36:09.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:09.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:09.328 -07 000000382 INF: FPGA: Recv ZSGSRD 30070 17-03-17 22:36:09.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:09.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:09.338 -07 000000459 INF: FPGA: Recv ZSGSRD 30067 17-03-17 22:36:09.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:09.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:09.348 -07 000000480 INF: FPGA: Recv ZSGSRD 30075 17-03-17 22:36:09.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:09.358 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 22:36:09.358 -07 000000547 INF: FPGA: Recv ZPIEZORD 25675 17-03-17 22:36:09.368 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:09.368 -07 000000610 INF: Z Motor: Piezo is near 34.8 V (nominally 0 to 100 V), expect near 44.5 V, since DAC is at 4.450 V. Piezo Error = -9.7 V. 17-03-17 22:36:09.368 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.5 um, Read 10 ADC samples: Avg = 30072 (-132.7 uncal um), Error = 0.8 uncal um, Median = 30070 (-132.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30066 (-132.7 uncal um), Max = 30078 (-132.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um) 17-03-17 22:36:09.368 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30072, posNoise = 6, negNoise = 6 17-03-17 22:36:09.368 -07 000000610 INF: Z Motor: After move to -0.133509, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 22:36:09.368 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms) 17-03-17 22:36:09.368 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 22:36:09.368 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 22:36:09.368 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 22:36:09.368 -07 000000593 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 22:36:09.368 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-17 22:36:09.368 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 22:36:09.368 -07 000000551 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-17 22:36:09.368 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-17 22:36:09.368 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 22:36:09.368 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-17 22:36:09.368 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms. 17-03-17 22:36:09.368 -07 000000551 INF: Camera: sBCa_SetPowerMode(785074704, 1) start. 17-03-17 22:36:09.378 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms. 17-03-17 22:36:09.378 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-17 22:36:09.388 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms. 17-03-17 22:36:09.388 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms. 17-03-17 22:36:09.398 -07 000000551 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 21 ms. 17-03-17 22:36:09.398 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-17 22:36:09.398 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms. 17-03-17 22:36:09.398 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-17 22:36:09.408 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms. 17-03-17 22:36:09.408 -07 000000551 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 36 ms. 17-03-17 22:36:09.408 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 455 455 219 219 29342 150\n [Camera] 17-03-17 22:36:09.608 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-17 22:36:09.998 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 65, FrontChillerTemperature: 4.065709, 17-03-17 22:36:10.068 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 647 17-03-17 22:36:10.068 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 647 17-03-17 22:36:10.068 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 22:36:10.068 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 647 17-03-17 22:36:10.068 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 647 17-03-17 22:36:10.068 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 22:36:10.078 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 22:36:10.078 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start. 17-03-17 22:36:10.078 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 22:36:10.078 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start. 17-03-17 22:36:10.258 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29342 840 17-03-17 22:36:10.408 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP turning grn on 991 17-03-17 22:36:10.448 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 372 ms. 17-03-17 22:36:10.448 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms. 17-03-17 22:36:10.448 -07 000000547 INF: Camera: CopyActivePixFullImage start. 17-03-17 22:36:10.448 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 376 ms. 17-03-17 22:36:10.448 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms. 17-03-17 22:36:10.448 -07 000000627 INF: Camera: CopyActivePixFullImage start. 17-03-17 22:36:10.458 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-17 22:36:10.458 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-17 22:36:10.458 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms. 17-03-17 22:36:10.458 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms. 17-03-17 22:36:10.628 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1209 17-03-17 22:36:10.628 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1209 17-03-17 22:36:10.628 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 22:36:10.628 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1209 17-03-17 22:36:10.628 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1209 17-03-17 22:36:10.628 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 22:36:10.748 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 22:36:10.748 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) start. 17-03-17 22:36:10.748 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 22:36:10.748 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1406045800, 0x0, 391868352) start. 17-03-17 22:36:10.818 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP 1402 17-03-17 22:36:10.818 -07 000000541 INF: FPGA: Recv CAMDBLSNAP 17-03-17 22:36:10.818 -07 000000610 INF: FPGA: 'CAMDBLSNAP 455 455 219 219 29342 150' command took 2 ms to send, 1406 ms to get response, and 1409 ms overall 17-03-17 22:36:10.818 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503 17-03-17 22:36:10.818 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.9111328125, Z-Position -0.133512259538171. ------ 17-03-17 22:36:10.828 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 22:36:10.828 -07 000000486 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.13970 mm 17-03-17 22:36:10.828 -07 000000486 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-17 22:36:10.828 -07 000000547 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True) 17-03-17 22:36:10.828 -07 000000547 INF: Y Motor: Moving to 60.7426 mm, started at 59.9111 mm, delta = 0.8315 mm 17-03-17 22:36:10.828 -07 000000608 INF: FPGA: Recv FOCMRRCUR 17-03-17 22:36:10.828 -07 000000480 INF: Z Motor: Entering MoveAbsStepped (DAC = 30518, sync = True, waitForSettling = False) 17-03-17 22:36:10.828 -07 000000480 INF: Z Motor: Moving to -0.139702 mm, started at -0.133512 mm, distance = -6.19 um 17-03-17 22:36:10.838 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall 17-03-17 22:36:10.838 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 22:36:10.838 -07 000000458 INF: FPGA: Recv YRDPOS 122698 17-03-17 22:36:10.848 -07 000000480 INF: FPGA: Xmit ZDACW 30518\n [Z Motor] 17-03-17 22:36:10.848 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall 17-03-17 22:36:10.848 -07 000000547 INF: Y Motor: Encoder = 122698 = motor step 95857.8 = 59.9111 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 22:36:10.848 -07 000000547 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-17 22:36:10.848 -07 000000547 INF: Y Motor: Moving 1330 steps2 17-03-17 22:36:10.848 -07 000000593 INF: FPGA: Recv ZDACW 17-03-17 22:36:10.858 -07 000000480 INF: FPGA: 'ZDACW 30518' command took 0 ms to send, 0 ms to get response, and 23 ms overall 17-03-17 22:36:10.858 -07 000000576 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror] 17-03-17 22:36:10.868 -07 000000547 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-17 22:36:10.878 -07 000000480 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 22:36:10.878 -07 000000458 INF: FPGA: Recv ZDACR 30518 17-03-17 22:36:10.888 -07 000000480 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall 17-03-17 22:36:10.888 -07 000000480 INF: Z Motor: MoveAbsStepped took 53 ms (did NOT wait for settling yet)) 17-03-17 22:36:11.058 -07 000000459 INF: FPGA: Recv FOCMRRFOC 17-03-17 22:36:11.058 -07 000000576 INF: FPGA: 'FOCMRRFOC' command took 3 ms to send, 195 ms to get response, and 225 ms overall 17-03-17 22:36:11.148 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) end. Duration was 400 ms. 17-03-17 22:36:11.148 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms. 17-03-17 22:36:11.148 -07 000000415 INF: Camera: CopyActivePixFullImage start. 17-03-17 22:36:11.148 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1406045800, 0x0, 391868352) end. Duration was 399 ms. 17-03-17 22:36:11.148 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms. 17-03-17 22:36:11.148 -07 000000462 INF: Camera: CopyActivePixFullImage start. 17-03-17 22:36:11.148 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-17 22:36:11.158 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-17 22:36:11.158 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 525 ms. 17-03-17 22:36:11.158 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 528 ms. 17-03-17 22:36:11.238 -07 000000502 INF: FPGA: Recv YMVTILE 17-03-17 22:36:11.238 -07 000000547 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall 17-03-17 22:36:11.278 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 22:36:11.278 -07 000000576 INF: FPGA: Recv YRDPOS 124381 17-03-17 22:36:11.288 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:11.288 -07 000000547 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 22:36:11.288 -07 000000547 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm) 17-03-17 22:36:11.288 -07 000000547 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.831 mm, average velocity = 2.094 mm/sec 17-03-17 22:36:11.988 -07 000000593 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 22:36:11.988 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 64. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1026, R2=1057, Total=2083. Warn if over 250 bubbles per interval. 17-03-17 22:36:12.238 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 22:36:12.238 -07 000000623 INF: FPGA: Recv YRDPOS 124381 17-03-17 22:36:12.248 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 22:36:12.248 -07 000000547 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 22:36:12.268 -07 000000547 INF: Y Motor: After move to 60.742607, error = -0.009697, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm 17-03-17 22:36:12.268 -07 000000547 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm) 17-03-17 22:36:12.268 -07 000000547 INF: Y Motor: Moved to 60.7329 after 1441 ms (table move) 17-03-17 22:36:12.268 -07 000000486 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139702 mm (DAC = 30518) 17-03-17 22:36:12.268 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:12.278 -07 000000480 INF: FPGA: Recv ZSGSRD 31038 17-03-17 22:36:12.288 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 22:36:12.288 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:12.288 -07 000000415 INF: FPGA: Recv ZSGSRD 31039 17-03-17 22:36:12.298 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:12.298 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:12.298 -07 000000569 INF: FPGA: Recv ZSGSRD 31039 17-03-17 22:36:12.308 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:12.308 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:12.308 -07 000000502 INF: FPGA: Recv ZSGSRD 31040 17-03-17 22:36:12.318 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:12.318 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:12.318 -07 000000576 INF: FPGA: Recv ZSGSRD 31038 17-03-17 22:36:12.328 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:12.328 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:12.328 -07 000000551 INF: FPGA: Recv ZSGSRD 31028 17-03-17 22:36:12.338 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:12.338 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:12.338 -07 000000480 INF: FPGA: Recv ZSGSRD 31040 17-03-17 22:36:12.348 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:12.348 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:12.348 -07 000000593 INF: FPGA: Recv ZSGSRD 31031 17-03-17 22:36:12.358 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:12.358 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:12.358 -07 000000608 INF: FPGA: Recv ZSGSRD 31039 17-03-17 22:36:12.368 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:12.368 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:12.368 -07 000000482 INF: FPGA: Recv ZSGSRD 31041 17-03-17 22:36:12.378 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:12.378 -07 000000486 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 22:36:12.378 -07 000000459 INF: FPGA: Recv ZPIEZORD 26965 17-03-17 22:36:12.388 -07 000000486 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:12.388 -07 000000486 INF: Z Motor: Piezo is near 37.6 V (nominally 0 to 100 V), expect near 46.6 V, since DAC is at 4.657 V. Piezo Error = -9.0 V. 17-03-17 22:36:12.388 -07 000000486 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.7 um, Read 10 ADC samples: Avg = 31037 (-138.9 uncal um), Error = 0.8 uncal um, Median = 31039 (-138.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 31028 (-138.9 uncal um), Max = 31041 (-138.9 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um) 17-03-17 22:36:12.388 -07 000000486 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31037, posNoise = 4, negNoise = 9 17-03-17 22:36:12.388 -07 000000486 INF: Z Motor: After move to -0.139702, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 22:36:12.388 -07 000000486 INF: Z Motor: Settle wait time = 1443 ms, measure time = 111 ms (allowed 150 ms), total time = 1554 ms 17-03-17 22:36:12.388 -07 000000486 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms 17-03-17 22:36:12.428 -07 000000486 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1597 ms 17-03-17 22:36:12.428 -07 000000486 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-17 22:36:12.428 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 22:36:12.428 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 22:36:12.428 -07 000000541 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 22:36:12.428 -07 000000593 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 22:36:12.428 -07 000000627 INF: Disarm and arm camera sensor 0: ROITrigger start. 17-03-17 22:36:12.428 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 22:36:12.428 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 22:36:12.428 -07 000000627 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start. 17-03-17 22:36:12.438 -07 000000627 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms. 17-03-17 22:36:12.438 -07 000000627 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start. 17-03-17 22:36:12.448 -07 000000627 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms. 17-03-17 22:36:12.448 -07 000000627 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms. 17-03-17 22:36:12.448 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera] 17-03-17 22:36:12.498 -07 000000627 INF: FPGA: Recv @CAMSNAP turning led on 40 17-03-17 22:36:12.698 -07 000000541 INF: FPGA: Recv @CAMSNAP img rdy 240 17-03-17 22:36:12.698 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240 17-03-17 22:36:12.698 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start. 17-03-17 22:36:12.698 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 606469960, 0x0, 559484976) start. 17-03-17 22:36:12.738 -07 000000459 INF: FPGA: Recv @CAMSNAP 280 17-03-17 22:36:12.738 -07 000000459 INF: FPGA: Recv CAMSNAP 17-03-17 22:36:12.738 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 285 ms overall 17-03-17 22:36:12.828 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 606469960, 0x0, 559484976) end. Duration was 127 ms. 17-03-17 22:36:12.828 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-17 22:36:12.828 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms. 17-03-17 22:36:12.828 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms. 17-03-17 22:36:12.838 -07 000000415 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 22:36:12.838 -07 000000502 INF: Autofocus start 17-03-17 22:36:12.838 -07 000000502 INF: MeasureProfile start 17-03-17 22:36:12.838 -07 000000569 INF: FPGA: Recv FOCMRRCUR 17-03-17 22:36:12.848 -07 000000415 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-17 22:36:12.848 -07 000000415 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror] 17-03-17 22:36:12.848 -07 000000502 INF: MeasureProfile done 17-03-17 22:36:12.848 -07 000000502 INF: X=0 Z correction [um]=-0.02394831 17-03-17 22:36:12.848 -07 000000502 INF: Autofocus finished 17-03-17 22:36:13.048 -07 000000482 INF: FPGA: Recv FOCMRRIMG 17-03-17 22:36:13.048 -07 000000415 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall 17-03-17 22:36:13.048 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.73291015625, Z-position -0.13971162425497. ---------- 17-03-17 22:36:13.048 -07 000000610 INF: Cycle 65 Tile 2 Exposure Settings A 455 G 219 T 219 C 455 17-03-17 22:36:13.058 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 29025, sync = True, waitForSettling = True) 17-03-17 22:36:13.058 -07 000000610 INF: Z Motor: Moving to -0.132868 mm, started at -0.139712 mm, distance = 6.84 um 17-03-17 22:36:13.058 -07 000000610 INF: FPGA: Xmit ZDACW 29025\n [Z Motor] 17-03-17 22:36:13.058 -07 000000541 INF: FPGA: Recv ZDACW 17-03-17 22:36:13.068 -07 000000610 INF: FPGA: 'ZDACW 29025' command took 0 ms to send, 0 ms to get response, and 8 ms overall 17-03-17 22:36:13.068 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 22:36:13.068 -07 000000415 INF: FPGA: Recv ZDACR 29025 17-03-17 22:36:13.078 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:13.078 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-17 22:36:13.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:13.228 -07 000000482 INF: FPGA: Recv ZSGSRD 29980 17-03-17 22:36:13.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:13.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:13.238 -07 000000502 INF: FPGA: Recv ZSGSRD 29971 17-03-17 22:36:13.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:13.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:13.248 -07 000000459 INF: FPGA: Recv ZSGSRD 29969 17-03-17 22:36:13.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:13.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:13.258 -07 000000541 INF: FPGA: Recv ZSGSRD 29971 17-03-17 22:36:13.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:13.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:13.268 -07 000000458 INF: FPGA: Recv ZSGSRD 29970 17-03-17 22:36:13.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:13.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:13.278 -07 000000382 INF: FPGA: Recv ZSGSRD 29977 17-03-17 22:36:13.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:13.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:13.288 -07 000000608 INF: FPGA: Recv ZSGSRD 29968 17-03-17 22:36:13.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:13.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:13.298 -07 000000551 INF: FPGA: Recv ZSGSRD 29970 17-03-17 22:36:13.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:13.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:13.308 -07 000000623 INF: FPGA: Recv ZSGSRD 29969 17-03-17 22:36:13.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:13.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:13.318 -07 000000593 INF: FPGA: Recv ZSGSRD 29973 17-03-17 22:36:13.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:13.328 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 22:36:13.328 -07 000000482 INF: FPGA: Recv ZPIEZORD 25567 17-03-17 22:36:13.338 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:13.338 -07 000000610 INF: Z Motor: Piezo is near 34.6 V (nominally 0 to 100 V), expect near 44.3 V, since DAC is at 4.429 V. Piezo Error = -9.7 V. 17-03-17 22:36:13.338 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.9 um, Read 10 ADC samples: Avg = 29972 (-132.1 uncal um), Error = 0.8 uncal um, Median = 29970 (-132.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29968 (-132.1 uncal um), Max = 29980 (-132.1 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 4 (0.0 uncal um) 17-03-17 22:36:13.338 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29972, posNoise = 8, negNoise = 4 17-03-17 22:36:13.338 -07 000000610 INF: Z Motor: After move to -0.132868, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 22:36:13.338 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms) 17-03-17 22:36:13.338 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 22:36:13.338 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 22:36:13.338 -07 000000415 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 22:36:13.338 -07 000000486 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-17 22:36:13.338 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 22:36:13.338 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 22:36:13.338 -07 000000547 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-17 22:36:13.338 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-17 22:36:13.338 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 22:36:13.338 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-17 22:36:13.338 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms. 17-03-17 22:36:13.338 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-17 22:36:13.348 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms. 17-03-17 22:36:13.348 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-17 22:36:13.348 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms. 17-03-17 22:36:13.348 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-17 22:36:13.358 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms. 17-03-17 22:36:13.358 -07 000000486 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms. 17-03-17 22:36:13.358 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms. 17-03-17 22:36:13.358 -07 000000547 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms. 17-03-17 22:36:13.368 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 455 455 219 219 29202 150\n [Camera] 17-03-17 22:36:13.568 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-17 22:36:14.018 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 647 17-03-17 22:36:14.018 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 647 17-03-17 22:36:14.018 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 22:36:14.018 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 647 17-03-17 22:36:14.018 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 647 17-03-17 22:36:14.028 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 22:36:14.028 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 22:36:14.028 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start. 17-03-17 22:36:14.028 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 22:36:14.028 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start. 17-03-17 22:36:14.208 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29202 840 17-03-17 22:36:14.358 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP turning grn on 990 17-03-17 22:36:14.418 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 395 ms. 17-03-17 22:36:14.418 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms. 17-03-17 22:36:14.418 -07 000000502 INF: Camera: CopyActivePixFullImage start. 17-03-17 22:36:14.428 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 22:36:14.428 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms. 17-03-17 22:36:14.428 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 397 ms. 17-03-17 22:36:14.428 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms. 17-03-17 22:36:14.428 -07 000000382 INF: Camera: CopyActivePixFullImage start. 17-03-17 22:36:14.428 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 22:36:14.438 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms. 17-03-17 22:36:14.578 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1209 17-03-17 22:36:14.578 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1209 17-03-17 22:36:14.578 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 22:36:14.588 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1209 17-03-17 22:36:14.588 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1209 17-03-17 22:36:14.588 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 22:36:14.588 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 22:36:14.588 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start. 17-03-17 22:36:14.588 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 22:36:14.588 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) start. 17-03-17 22:36:14.768 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP 1402 17-03-17 22:36:14.768 -07 000000547 INF: FPGA: Recv CAMDBLSNAP 17-03-17 22:36:14.778 -07 000000610 INF: FPGA: 'CAMDBLSNAP 455 455 219 219 29202 150' command took 2 ms to send, 1399 ms to get response, and 1409 ms overall 17-03-17 22:36:14.778 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503 17-03-17 22:36:14.778 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.73291015625, Z-Position -0.132869838323994. ------ 17-03-17 22:36:14.778 -07 000000458 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 22:36:14.778 -07 000000480 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.13953 mm 17-03-17 22:36:14.778 -07 000000480 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-17 22:36:14.778 -07 000000576 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True) 17-03-17 22:36:14.778 -07 000000576 INF: Y Motor: Moving to 61.5726 mm, started at 60.7329 mm, delta = 0.8397 mm 17-03-17 22:36:14.778 -07 000000608 INF: FPGA: Recv FOCMRRCUR 17-03-17 22:36:14.788 -07 000000458 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall 17-03-17 22:36:14.788 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 22:36:14.788 -07 000000486 INF: Z Motor: Entering MoveAbsStepped (DAC = 30479, sync = True, waitForSettling = False) 17-03-17 22:36:14.788 -07 000000486 INF: Z Motor: Moving to -0.139524 mm, started at -0.132870 mm, distance = -6.65 um 17-03-17 22:36:14.788 -07 000000551 INF: FPGA: Recv YRDPOS 124382 17-03-17 22:36:14.798 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 22:36:14.798 -07 000000576 INF: Y Motor: Encoder = 124382 = motor step 97173.4 = 60.7334 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 22:36:14.798 -07 000000458 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror] 17-03-17 22:36:14.798 -07 000000576 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-17 22:36:14.798 -07 000000576 INF: Y Motor: Moving 1343 steps-20 17-03-17 22:36:14.808 -07 000000486 INF: FPGA: Xmit ZDACW 30479\n [Z Motor] 17-03-17 22:36:14.808 -07 000000608 INF: FPGA: Recv ZDACW 17-03-17 22:36:14.818 -07 000000576 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-17 22:36:14.818 -07 000000486 INF: FPGA: 'ZDACW 30479' command took 0 ms to send, 0 ms to get response, and 29 ms overall 17-03-17 22:36:14.828 -07 000000486 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 22:36:14.828 -07 000000547 INF: FPGA: Recv ZDACR 30479 17-03-17 22:36:14.838 -07 000000486 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall 17-03-17 22:36:14.838 -07 000000486 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet)) 17-03-17 22:36:14.988 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) end. Duration was 397 ms. 17-03-17 22:36:14.988 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms. 17-03-17 22:36:14.988 -07 000000541 INF: Camera: CopyActivePixFullImage start. 17-03-17 22:36:14.988 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 400 ms. 17-03-17 22:36:14.988 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms. 17-03-17 22:36:14.988 -07 000000627 INF: Camera: CopyActivePixFullImage start. 17-03-17 22:36:14.988 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-17 22:36:14.988 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms. 17-03-17 22:36:14.988 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-17 22:36:14.998 -07 000000462 INF: FPGA: Recv FOCMRRFOC 17-03-17 22:36:14.998 -07 000000458 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 212 ms overall 17-03-17 22:36:14.998 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms. 17-03-17 22:36:15.188 -07 000000608 INF: FPGA: Recv YMVTILE 17-03-17 22:36:15.188 -07 000000576 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 392 ms overall 17-03-17 22:36:15.228 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 22:36:15.238 -07 000000382 INF: FPGA: Recv YRDPOS 126083 17-03-17 22:36:15.238 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall 17-03-17 22:36:15.238 -07 000000576 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 22:36:15.238 -07 000000576 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm) 17-03-17 22:36:15.238 -07 000000576 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 392 ms, distance = 0.840 mm, average velocity = 2.142 mm/sec 17-03-17 22:36:15.368 -07 000000551 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 65, FrontChillerTemperature: 4.045313, 17-03-17 22:36:16.188 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 22:36:16.188 -07 000000547 INF: FPGA: Recv YRDPOS 126083 17-03-17 22:36:16.198 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:16.198 -07 000000576 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 22:36:16.218 -07 000000576 INF: Y Motor: After move to 61.572609, error = -0.008644, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm 17-03-17 22:36:16.218 -07 000000576 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm) 17-03-17 22:36:16.218 -07 000000576 INF: Y Motor: Moved to 61.5640 after 1436 ms (table move) 17-03-17 22:36:16.218 -07 000000480 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139524 mm (DAC = 30479) 17-03-17 22:36:16.218 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:16.228 -07 000000541 INF: FPGA: Recv ZSGSRD 31013 17-03-17 22:36:16.228 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall 17-03-17 22:36:16.228 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:16.228 -07 000000623 INF: FPGA: Recv ZSGSRD 31011 17-03-17 22:36:16.238 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall 17-03-17 22:36:16.238 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:16.238 -07 000000608 INF: FPGA: Recv ZSGSRD 31005 17-03-17 22:36:16.248 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:16.248 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:16.248 -07 000000482 INF: FPGA: Recv ZSGSRD 31016 17-03-17 22:36:16.258 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:16.258 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:16.258 -07 000000502 INF: FPGA: Recv ZSGSRD 31015 17-03-17 22:36:16.268 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:16.268 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:16.268 -07 000000547 INF: FPGA: Recv ZSGSRD 31014 17-03-17 22:36:16.278 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:16.278 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:16.278 -07 000000593 INF: FPGA: Recv ZSGSRD 31006 17-03-17 22:36:16.288 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:16.288 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:16.288 -07 000000627 INF: FPGA: Recv ZSGSRD 31019 17-03-17 22:36:16.298 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall 17-03-17 22:36:16.298 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:16.298 -07 000000482 INF: FPGA: Recv ZSGSRD 31002 17-03-17 22:36:16.308 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:16.308 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:16.308 -07 000000551 INF: FPGA: Recv ZSGSRD 31008 17-03-17 22:36:16.318 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:16.318 -07 000000480 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 22:36:16.318 -07 000000462 INF: FPGA: Recv ZPIEZORD 27007 17-03-17 22:36:16.328 -07 000000480 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:16.328 -07 000000480 INF: Z Motor: Piezo is near 37.7 V (nominally 0 to 100 V), expect near 46.5 V, since DAC is at 4.651 V. Piezo Error = -8.8 V. 17-03-17 22:36:16.328 -07 000000480 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.5 um, Read 10 ADC samples: Avg = 31011 (-138.7 uncal um), Error = 0.8 uncal um, Median = 31012 (-138.7 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 31002 (-138.7 uncal um), Max = 31019 (-138.8 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um) 17-03-17 22:36:16.328 -07 000000480 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31011, posNoise = 8, negNoise = 9 17-03-17 22:36:16.328 -07 000000480 INF: Z Motor: After move to -0.139524, error = -0.000021, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 22:36:16.328 -07 000000480 INF: Z Motor: Settle wait time = 1438 ms, measure time = 102 ms (allowed 150 ms), total time = 1540 ms 17-03-17 22:36:16.328 -07 000000480 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms 17-03-17 22:36:16.378 -07 000000480 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1593 ms 17-03-17 22:36:16.378 -07 000000480 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-17 22:36:16.378 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 22:36:16.378 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 22:36:16.378 -07 000000541 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 22:36:16.378 -07 000000551 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 22:36:16.378 -07 000000458 INF: Disarm and arm camera sensor 0: ROITrigger start. 17-03-17 22:36:16.378 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 22:36:16.378 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms. 17-03-17 22:36:16.378 -07 000000458 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start. 17-03-17 22:36:16.388 -07 000000458 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms. 17-03-17 22:36:16.388 -07 000000458 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start. 17-03-17 22:36:16.388 -07 000000458 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms. 17-03-17 22:36:16.388 -07 000000458 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms. 17-03-17 22:36:16.398 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera] 17-03-17 22:36:16.438 -07 000000576 INF: FPGA: Recv @CAMSNAP turning led on 40 17-03-17 22:36:16.638 -07 000000541 INF: FPGA: Recv @CAMSNAP img rdy 240 17-03-17 22:36:16.638 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240 17-03-17 22:36:16.638 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start. 17-03-17 22:36:16.638 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start. 17-03-17 22:36:16.678 -07 000000576 INF: FPGA: Recv @CAMSNAP 280 17-03-17 22:36:16.678 -07 000000462 INF: FPGA: Recv CAMSNAP 17-03-17 22:36:16.678 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 285 ms overall 17-03-17 22:36:16.758 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 115 ms. 17-03-17 22:36:16.758 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-17 22:36:16.758 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms. 17-03-17 22:36:16.758 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms. 17-03-17 22:36:16.778 -07 000000459 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 22:36:16.778 -07 000000502 INF: Autofocus start 17-03-17 22:36:16.778 -07 000000502 INF: MeasureProfile start 17-03-17 22:36:16.778 -07 000000623 INF: FPGA: Recv FOCMRRCUR 17-03-17 22:36:16.788 -07 000000459 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-17 22:36:16.788 -07 000000459 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror] 17-03-17 22:36:16.788 -07 000000502 INF: MeasureProfile done 17-03-17 22:36:16.788 -07 000000502 INF: X=0 Z correction [um]=-0.02394831 17-03-17 22:36:16.788 -07 000000502 INF: Autofocus finished 17-03-17 22:36:16.988 -07 000000623 INF: FPGA: Recv FOCMRRIMG 17-03-17 22:36:16.988 -07 000000459 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 205 ms overall 17-03-17 22:36:16.988 -07 000000482 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 22:36:16.988 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 64. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1026, R2=1057, Total=2083. Warn if over 250 bubbles per interval. 17-03-17 22:36:16.988 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.56396484375, Z-position -0.139544594739284. ---------- 17-03-17 22:36:16.998 -07 000000610 INF: Cycle 65 Tile 3 Exposure Settings A 455 G 219 T 219 C 455 17-03-17 22:36:16.998 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28987, sync = True, waitForSettling = True) 17-03-17 22:36:16.998 -07 000000610 INF: Z Motor: Moving to -0.132694 mm, started at -0.139545 mm, distance = 6.85 um 17-03-17 22:36:16.998 -07 000000610 INF: FPGA: Xmit ZDACW 28987\n [Z Motor] 17-03-17 22:36:16.998 -07 000000627 INF: FPGA: Recv ZDACW 17-03-17 22:36:17.008 -07 000000610 INF: FPGA: 'ZDACW 28987' command took 0 ms to send, 0 ms to get response, and 5 ms overall 17-03-17 22:36:17.008 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 22:36:17.008 -07 000000608 INF: FPGA: Recv ZDACR 28987 17-03-17 22:36:17.018 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:17.018 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-17 22:36:17.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:17.168 -07 000000502 INF: FPGA: Recv ZSGSRD 29950 17-03-17 22:36:17.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 22:36:17.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:17.178 -07 000000480 INF: FPGA: Recv ZSGSRD 29948 17-03-17 22:36:17.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:17.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:17.188 -07 000000547 INF: FPGA: Recv ZSGSRD 29945 17-03-17 22:36:17.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:17.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:17.198 -07 000000627 INF: FPGA: Recv ZSGSRD 29945 17-03-17 22:36:17.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:17.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:17.208 -07 000000623 INF: FPGA: Recv ZSGSRD 29940 17-03-17 22:36:17.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:17.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:17.218 -07 000000502 INF: FPGA: Recv ZSGSRD 29946 17-03-17 22:36:17.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:17.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:17.228 -07 000000480 INF: FPGA: Recv ZSGSRD 29941 17-03-17 22:36:17.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:17.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:17.238 -07 000000547 INF: FPGA: Recv ZSGSRD 29947 17-03-17 22:36:17.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:17.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:17.248 -07 000000627 INF: FPGA: Recv ZSGSRD 29946 17-03-17 22:36:17.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:17.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:17.258 -07 000000623 INF: FPGA: Recv ZSGSRD 29945 17-03-17 22:36:17.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:17.268 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 22:36:17.268 -07 000000502 INF: FPGA: Recv ZPIEZORD 25597 17-03-17 22:36:17.278 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:17.278 -07 000000610 INF: Z Motor: Piezo is near 34.7 V (nominally 0 to 100 V), expect near 44.2 V, since DAC is at 4.423 V. Piezo Error = -9.5 V. 17-03-17 22:36:17.278 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.7 um, Read 10 ADC samples: Avg = 29945 (-131.9 uncal um), Error = 0.8 uncal um, Median = 29946 (-131.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29940 (-131.9 uncal um), Max = 29950 (-131.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um) 17-03-17 22:36:17.278 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29945, posNoise = 5, negNoise = 5 17-03-17 22:36:17.278 -07 000000610 INF: Z Motor: After move to -0.132694, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 22:36:17.278 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms) 17-03-17 22:36:17.278 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 22:36:17.278 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 22:36:17.278 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 22:36:17.278 -07 000000547 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 22:36:17.278 -07 000000482 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-17 22:36:17.278 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-17 22:36:17.278 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 22:36:17.278 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-17 22:36:17.278 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms. 17-03-17 22:36:17.278 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-17 22:36:17.278 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 3 ms. 17-03-17 22:36:17.278 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-17 22:36:17.288 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms. 17-03-17 22:36:17.288 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-17 22:36:17.288 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms. 17-03-17 22:36:17.288 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-17 22:36:17.298 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 13 ms. 17-03-17 22:36:17.298 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms. 17-03-17 22:36:17.298 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 13 ms. 17-03-17 22:36:17.298 -07 000000482 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms. 17-03-17 22:36:17.298 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 455 455 219 219 29163 150\n [Camera] 17-03-17 22:36:17.508 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-17 22:36:17.958 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 647 17-03-17 22:36:17.958 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 647 17-03-17 22:36:17.958 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 22:36:17.958 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 22:36:17.958 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start. 17-03-17 22:36:17.958 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 647 17-03-17 22:36:17.958 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 647 17-03-17 22:36:17.958 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 22:36:17.958 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 22:36:17.958 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start. 17-03-17 22:36:18.148 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29163 840 17-03-17 22:36:18.298 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning grn on 990 17-03-17 22:36:18.348 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 388 ms. 17-03-17 22:36:18.348 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms. 17-03-17 22:36:18.348 -07 000000462 INF: Camera: CopyActivePixFullImage start. 17-03-17 22:36:18.348 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 386 ms. 17-03-17 22:36:18.348 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 387 ms. 17-03-17 22:36:18.348 -07 000000608 INF: Camera: CopyActivePixFullImage start. 17-03-17 22:36:18.358 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-17 22:36:18.358 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 394 ms. 17-03-17 22:36:18.358 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-17 22:36:18.358 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms. 17-03-17 22:36:18.518 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1209 17-03-17 22:36:18.518 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1209 17-03-17 22:36:18.518 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 22:36:18.518 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 22:36:18.518 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start. 17-03-17 22:36:18.528 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1209 17-03-17 22:36:18.528 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1209 17-03-17 22:36:18.528 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 22:36:18.528 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 22:36:18.528 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start. 17-03-17 22:36:18.708 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP 1402 17-03-17 22:36:18.708 -07 000000502 INF: FPGA: Recv CAMDBLSNAP 17-03-17 22:36:18.708 -07 000000610 INF: FPGA: 'CAMDBLSNAP 455 455 219 219 29163 150' command took 2 ms to send, 1399 ms to get response, and 1411 ms overall 17-03-17 22:36:18.718 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503 17-03-17 22:36:18.718 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.56396484375, Z-Position -0.132696384596167. ------ 17-03-17 22:36:18.718 -07 000000458 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 22:36:18.718 -07 000000576 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.13911 mm 17-03-17 22:36:18.718 -07 000000576 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-17 22:36:18.718 -07 000000569 INF: Z Motor: Entering MoveAbsStepped (DAC = 30389, sync = True, waitForSettling = False) 17-03-17 22:36:18.718 -07 000000482 INF: FPGA: Recv FOCMRRCUR 17-03-17 22:36:18.718 -07 000000569 INF: Z Motor: Moving to -0.139112 mm, started at -0.132696 mm, distance = -6.42 um 17-03-17 22:36:18.718 -07 000000480 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True) 17-03-17 22:36:18.718 -07 000000480 INF: Y Motor: Moving to 62.4026 mm, started at 61.5640 mm, delta = 0.8386 mm 17-03-17 22:36:18.728 -07 000000458 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall 17-03-17 22:36:18.728 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 22:36:18.728 -07 000000462 INF: FPGA: Recv YRDPOS 126083 17-03-17 22:36:18.738 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 11 ms overall 17-03-17 22:36:18.738 -07 000000480 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 22:36:18.738 -07 000000480 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-17 22:36:18.738 -07 000000480 INF: Y Motor: Moving 1342 steps-18 17-03-17 22:36:18.738 -07 000000569 INF: FPGA: Xmit ZDACW 30389\n [Z Motor] 17-03-17 22:36:18.738 -07 000000541 INF: FPGA: Recv ZDACW 17-03-17 22:36:18.748 -07 000000458 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror] 17-03-17 22:36:18.748 -07 000000569 INF: FPGA: 'ZDACW 30389' command took 1 ms to send, 0 ms to get response, and 22 ms overall 17-03-17 22:36:18.758 -07 000000480 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-17 22:36:18.768 -07 000000569 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 22:36:18.768 -07 000000482 INF: FPGA: Recv ZDACR 30389 17-03-17 22:36:18.778 -07 000000569 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall 17-03-17 22:36:18.778 -07 000000569 INF: Z Motor: MoveAbsStepped took 52 ms (did NOT wait for settling yet)) 17-03-17 22:36:18.918 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 393 ms. 17-03-17 22:36:18.918 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms. 17-03-17 22:36:18.918 -07 000000623 INF: Camera: CopyActivePixFullImage start. 17-03-17 22:36:18.918 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 398 ms. 17-03-17 22:36:18.918 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms. 17-03-17 22:36:18.918 -07 000000608 INF: Camera: CopyActivePixFullImage start. 17-03-17 22:36:18.918 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 22:36:18.928 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms. 17-03-17 22:36:18.928 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms. 17-03-17 22:36:18.928 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 403 ms. 17-03-17 22:36:18.948 -07 000000547 INF: FPGA: Recv FOCMRRFOC 17-03-17 22:36:18.948 -07 000000458 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall 17-03-17 22:36:19.128 -07 000000623 INF: FPGA: Recv YMVTILE 17-03-17 22:36:19.128 -07 000000480 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall 17-03-17 22:36:19.168 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 22:36:19.178 -07 000000608 INF: FPGA: Recv YRDPOS 127786 17-03-17 22:36:19.178 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall 17-03-17 22:36:19.178 -07 000000480 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 22:36:19.178 -07 000000480 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm) 17-03-17 22:36:19.178 -07 000000480 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.839 mm, average velocity = 2.112 mm/sec 17-03-17 22:36:20.128 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 22:36:20.128 -07 000000459 INF: FPGA: Recv YRDPOS 127786 17-03-17 22:36:20.138 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:20.138 -07 000000480 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 22:36:20.158 -07 000000480 INF: Y Motor: After move to 62.402607, error = -0.007099, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm 17-03-17 22:36:20.158 -07 000000480 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm) 17-03-17 22:36:20.158 -07 000000480 INF: Y Motor: Moved to 62.3955 after 1436 ms (table move) 17-03-17 22:36:20.158 -07 000000576 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139112 mm (DAC = 30389) 17-03-17 22:36:20.158 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:20.168 -07 000000415 INF: FPGA: Recv ZSGSRD 30945 17-03-17 22:36:20.168 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall 17-03-17 22:36:20.168 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:20.168 -07 000000608 INF: FPGA: Recv ZSGSRD 30946 17-03-17 22:36:20.178 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:20.178 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:20.178 -07 000000551 INF: FPGA: Recv ZSGSRD 30948 17-03-17 22:36:20.188 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:20.188 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:20.188 -07 000000462 INF: FPGA: Recv ZSGSRD 30939 17-03-17 22:36:20.198 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:20.198 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:20.198 -07 000000569 INF: FPGA: Recv ZSGSRD 30946 17-03-17 22:36:20.208 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:20.208 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:20.208 -07 000000541 INF: FPGA: Recv ZSGSRD 30942 17-03-17 22:36:20.218 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:20.218 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:20.218 -07 000000382 INF: FPGA: Recv ZSGSRD 30946 17-03-17 22:36:20.228 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:20.228 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:20.228 -07 000000551 INF: FPGA: Recv ZSGSRD 30943 17-03-17 22:36:20.238 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall 17-03-17 22:36:20.238 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:20.238 -07 000000569 INF: FPGA: Recv ZSGSRD 30937 17-03-17 22:36:20.248 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:20.248 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:20.248 -07 000000482 INF: FPGA: Recv ZSGSRD 30944 17-03-17 22:36:20.258 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:20.258 -07 000000576 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 22:36:20.258 -07 000000458 INF: FPGA: Recv ZPIEZORD 26930 17-03-17 22:36:20.268 -07 000000576 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:20.268 -07 000000576 INF: Z Motor: Piezo is near 37.5 V (nominally 0 to 100 V), expect near 46.4 V, since DAC is at 4.637 V. Piezo Error = -8.8 V. 17-03-17 22:36:20.268 -07 000000576 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.1 um, Read 10 ADC samples: Avg = 30944 (-138.3 uncal um), Error = 0.8 uncal um, Median = 30944 (-138.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30937 (-138.3 uncal um), Max = 30948 (-138.3 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um) 17-03-17 22:36:20.268 -07 000000576 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30944, posNoise = 4, negNoise = 7 17-03-17 22:36:20.268 -07 000000576 INF: Z Motor: After move to -0.139112, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 22:36:20.268 -07 000000576 INF: Z Motor: Settle wait time = 1440 ms, measure time = 103 ms (allowed 150 ms), total time = 1543 ms 17-03-17 22:36:20.268 -07 000000576 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms 17-03-17 22:36:20.318 -07 000000576 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1595 ms 17-03-17 22:36:20.318 -07 000000576 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-17 22:36:20.318 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 22:36:20.318 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 22:36:20.318 -07 000000415 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 22:36:20.318 -07 000000482 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 22:36:20.318 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger start. 17-03-17 22:36:20.318 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 22:36:20.318 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 22:36:20.318 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start. 17-03-17 22:36:20.328 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms. 17-03-17 22:36:20.328 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start. 17-03-17 22:36:20.338 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms. 17-03-17 22:36:20.338 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 19 ms. 17-03-17 22:36:20.338 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera] 17-03-17 22:36:20.388 -07 000000569 INF: FPGA: Recv @CAMSNAP turning led on 40 17-03-17 22:36:20.588 -07 000000569 INF: FPGA: Recv @CAMSNAP img rdy 240 17-03-17 22:36:20.588 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240 17-03-17 22:36:20.588 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start. 17-03-17 22:36:20.588 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 679626736, 0x0, 559484976) start. 17-03-17 22:36:20.628 -07 000000502 INF: FPGA: Recv @CAMSNAP 280 17-03-17 22:36:20.628 -07 000000480 INF: FPGA: Recv CAMSNAP 17-03-17 22:36:20.628 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 283 ms to get response, and 284 ms overall 17-03-17 22:36:20.698 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 679626736, 0x0, 559484976) end. Duration was 114 ms. 17-03-17 22:36:20.698 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-17 22:36:20.708 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms. 17-03-17 22:36:20.708 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms. 17-03-17 22:36:20.728 -07 000000458 INF: Autofocus start 17-03-17 22:36:20.728 -07 000000458 INF: MeasureProfile start 17-03-17 22:36:20.738 -07 000000551 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 65, FrontChillerTemperature: 3.989471, 17-03-17 22:36:20.748 -07 000000547 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 22:36:20.748 -07 000000486 INF: FPGA: Recv FOCMRRCUR 17-03-17 22:36:20.748 -07 000000458 INF: MeasureProfile done 17-03-17 22:36:20.748 -07 000000458 INF: X=0 Z correction [um]=-0.02394831 17-03-17 22:36:20.748 -07 000000458 INF: Autofocus finished 17-03-17 22:36:20.758 -07 000000547 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 24 ms overall 17-03-17 22:36:20.778 -07 000000547 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror] 17-03-17 22:36:20.978 -07 000000593 INF: FPGA: Recv FOCMRRIMG 17-03-17 22:36:20.978 -07 000000547 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 192 ms to get response, and 222 ms overall 17-03-17 22:36:20.978 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.3955078125, Z-position -0.139114172525786. ---------- 17-03-17 22:36:20.978 -07 000000610 INF: Cycle 65 Tile 4 Exposure Settings A 455 G 219 T 219 C 455 17-03-17 22:36:20.988 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28896, sync = True, waitForSettling = True) 17-03-17 22:36:20.988 -07 000000610 INF: Z Motor: Moving to -0.132277 mm, started at -0.139114 mm, distance = 6.84 um 17-03-17 22:36:20.988 -07 000000610 INF: FPGA: Xmit ZDACW 28896\n [Z Motor] 17-03-17 22:36:20.988 -07 000000459 INF: FPGA: Recv ZDACW 17-03-17 22:36:20.998 -07 000000610 INF: FPGA: 'ZDACW 28896' command took 0 ms to send, 0 ms to get response, and 8 ms overall 17-03-17 22:36:20.998 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 22:36:20.998 -07 000000623 INF: FPGA: Recv ZDACR 28896 17-03-17 22:36:21.008 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:21.008 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-17 22:36:21.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:21.158 -07 000000415 INF: FPGA: Recv ZSGSRD 29882 17-03-17 22:36:21.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 22:36:21.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:21.168 -07 000000576 INF: FPGA: Recv ZSGSRD 29884 17-03-17 22:36:21.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:21.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:21.178 -07 000000569 INF: FPGA: Recv ZSGSRD 29877 17-03-17 22:36:21.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:21.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:21.188 -07 000000482 INF: FPGA: Recv ZSGSRD 29883 17-03-17 22:36:21.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:21.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:21.198 -07 000000627 INF: FPGA: Recv ZSGSRD 29877 17-03-17 22:36:21.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:21.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:21.208 -07 000000502 INF: FPGA: Recv ZSGSRD 29879 17-03-17 22:36:21.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:21.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:21.218 -07 000000541 INF: FPGA: Recv ZSGSRD 29885 17-03-17 22:36:21.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:21.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:21.228 -07 000000458 INF: FPGA: Recv ZSGSRD 29883 17-03-17 22:36:21.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:21.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:21.238 -07 000000593 INF: FPGA: Recv ZSGSRD 29884 17-03-17 22:36:21.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:21.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:21.248 -07 000000382 INF: FPGA: Recv ZSGSRD 29879 17-03-17 22:36:21.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:21.258 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 22:36:21.258 -07 000000623 INF: FPGA: Recv ZPIEZORD 25527 17-03-17 22:36:21.268 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:21.268 -07 000000610 INF: Z Motor: Piezo is near 34.5 V (nominally 0 to 100 V), expect near 44.1 V, since DAC is at 4.409 V. Piezo Error = -9.6 V. 17-03-17 22:36:21.268 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.3 um, Read 10 ADC samples: Avg = 29881 (-131.5 uncal um), Error = 0.8 uncal um, Median = 29882 (-131.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29877 (-131.5 uncal um), Max = 29885 (-131.5 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um) 17-03-17 22:36:21.268 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29881, posNoise = 4, negNoise = 4 17-03-17 22:36:21.268 -07 000000610 INF: Z Motor: After move to -0.132277, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 22:36:21.268 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms) 17-03-17 22:36:21.268 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 22:36:21.268 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 22:36:21.268 -07 000000415 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 22:36:21.268 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 22:36:21.268 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-17 22:36:21.268 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 22:36:21.268 -07 000000547 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-17 22:36:21.268 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-17 22:36:21.268 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms. 17-03-17 22:36:21.268 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-17 22:36:21.268 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms. 17-03-17 22:36:21.268 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-17 22:36:21.278 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms. 17-03-17 22:36:21.278 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-17 22:36:21.278 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms. 17-03-17 22:36:21.278 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-17 22:36:21.288 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms. 17-03-17 22:36:21.288 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms. 17-03-17 22:36:21.288 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms. 17-03-17 22:36:21.288 -07 000000547 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms. 17-03-17 22:36:21.288 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 455 455 219 219 29073 150\n [Camera] 17-03-17 22:36:21.488 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-17 22:36:21.938 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 647 17-03-17 22:36:21.938 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 647 17-03-17 22:36:21.948 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 22:36:21.948 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 22:36:21.948 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start. 17-03-17 22:36:21.948 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 647 17-03-17 22:36:21.948 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 647 17-03-17 22:36:21.948 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 22:36:21.948 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 22:36:21.948 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) start. 17-03-17 22:36:21.988 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 22:36:21.988 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 64. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1026, R2=1057, Total=2083. Warn if over 250 bubbles per interval. 17-03-17 22:36:22.138 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29073 840 17-03-17 22:36:22.288 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning grn on 990 17-03-17 22:36:22.318 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) end. Duration was 372 ms. 17-03-17 22:36:22.318 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms. 17-03-17 22:36:22.318 -07 000000482 INF: Camera: CopyActivePixFullImage start. 17-03-17 22:36:22.318 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 378 ms. 17-03-17 22:36:22.318 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms. 17-03-17 22:36:22.318 -07 000000415 INF: Camera: CopyActivePixFullImage start. 17-03-17 22:36:22.318 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 22:36:22.328 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms. 17-03-17 22:36:22.328 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms. 17-03-17 22:36:22.328 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 385 ms. 17-03-17 22:36:22.508 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1209 17-03-17 22:36:22.508 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1209 17-03-17 22:36:22.508 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 22:36:22.508 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 22:36:22.508 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start. 17-03-17 22:36:22.508 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1209 17-03-17 22:36:22.508 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1209 17-03-17 22:36:22.508 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 22:36:22.508 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 22:36:22.508 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start. 17-03-17 22:36:22.698 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP 1402 17-03-17 22:36:22.698 -07 000000551 INF: FPGA: Recv CAMDBLSNAP 17-03-17 22:36:22.698 -07 000000610 INF: FPGA: 'CAMDBLSNAP 455 455 219 219 29073 150' command took 2 ms to send, 1403 ms to get response, and 1408 ms overall 17-03-17 22:36:22.698 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503 17-03-17 22:36:22.698 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.3955078125, Z-Position -0.132285235019094. ------ 17-03-17 22:36:22.698 -07 000000458 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 22:36:22.698 -07 000000623 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.13902 mm 17-03-17 22:36:22.698 -07 000000623 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-17 22:36:22.708 -07 000000382 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True) 17-03-17 22:36:22.708 -07 000000382 INF: Y Motor: Moving to 63.2326 mm, started at 62.3955 mm, delta = 0.8371 mm 17-03-17 22:36:22.708 -07 000000541 INF: Z Motor: Entering MoveAbsStepped (DAC = 30370, sync = True, waitForSettling = False) 17-03-17 22:36:22.708 -07 000000541 INF: Z Motor: Moving to -0.139025 mm, started at -0.132285 mm, distance = -6.74 um 17-03-17 22:36:22.708 -07 000000569 INF: FPGA: Recv FOCMRRCUR 17-03-17 22:36:22.708 -07 000000458 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 3 ms to get response, and 5 ms overall 17-03-17 22:36:22.708 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 22:36:22.708 -07 000000415 INF: FPGA: Recv YRDPOS 127787 17-03-17 22:36:22.718 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall 17-03-17 22:36:22.718 -07 000000541 INF: FPGA: Xmit ZDACW 30370\n [Z Motor] 17-03-17 22:36:22.718 -07 000000382 INF: Y Motor: Encoder = 127787 = motor step 99833.6 = 62.3960 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 22:36:22.718 -07 000000608 INF: FPGA: Recv ZDACW 17-03-17 22:36:22.718 -07 000000382 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-17 22:36:22.718 -07 000000382 INF: Y Motor: Moving 1339 steps-15 17-03-17 22:36:22.728 -07 000000541 INF: FPGA: 'ZDACW 30370' command took 0 ms to send, 0 ms to get response, and 16 ms overall 17-03-17 22:36:22.728 -07 000000458 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror] 17-03-17 22:36:22.738 -07 000000382 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-17 22:36:22.748 -07 000000541 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 22:36:22.748 -07 000000459 INF: FPGA: Recv ZDACR 30370 17-03-17 22:36:22.758 -07 000000541 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 30 ms overall 17-03-17 22:36:22.758 -07 000000541 INF: Z Motor: MoveAbsStepped took 47 ms (did NOT wait for settling yet)) 17-03-17 22:36:22.908 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 400 ms. 17-03-17 22:36:22.908 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms. 17-03-17 22:36:22.908 -07 000000593 INF: Camera: CopyActivePixFullImage start. 17-03-17 22:36:22.908 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 400 ms. 17-03-17 22:36:22.908 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms. 17-03-17 22:36:22.908 -07 000000627 INF: Camera: CopyActivePixFullImage start. 17-03-17 22:36:22.918 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms. 17-03-17 22:36:22.918 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms. 17-03-17 22:36:22.918 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 22:36:22.918 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms. 17-03-17 22:36:22.928 -07 000000415 INF: FPGA: Recv FOCMRRFOC 17-03-17 22:36:22.928 -07 000000458 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 219 ms overall 17-03-17 22:36:23.108 -07 000000502 INF: FPGA: Recv YMVTILE 17-03-17 22:36:23.108 -07 000000382 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall 17-03-17 22:36:23.148 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 22:36:23.158 -07 000000541 INF: FPGA: Recv YRDPOS 129483 17-03-17 22:36:23.158 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall 17-03-17 22:36:23.158 -07 000000382 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 22:36:23.158 -07 000000382 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm) 17-03-17 22:36:23.158 -07 000000382 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.837 mm, average velocity = 2.125 mm/sec 17-03-17 22:36:24.108 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 22:36:24.108 -07 000000458 INF: FPGA: Recv YRDPOS 129483 17-03-17 22:36:24.118 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 22:36:24.118 -07 000000382 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 22:36:24.138 -07 000000382 INF: Y Motor: After move to 63.232609, error = -0.008488, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm 17-03-17 22:36:24.138 -07 000000382 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm) 17-03-17 22:36:24.138 -07 000000382 INF: Y Motor: Moved to 63.2241 after 1433 ms (table move) 17-03-17 22:36:24.138 -07 000000623 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139025 mm (DAC = 30370) 17-03-17 22:36:24.148 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:24.148 -07 000000382 INF: FPGA: Recv ZSGSRD 30928 17-03-17 22:36:24.158 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:24.158 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:24.158 -07 000000480 INF: FPGA: Recv ZSGSRD 30928 17-03-17 22:36:24.168 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:24.168 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:24.168 -07 000000569 INF: FPGA: Recv ZSGSRD 30933 17-03-17 22:36:24.178 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:24.178 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:24.178 -07 000000541 INF: FPGA: Recv ZSGSRD 30934 17-03-17 22:36:24.188 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:24.188 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:24.188 -07 000000462 INF: FPGA: Recv ZSGSRD 30933 17-03-17 22:36:24.198 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:24.198 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:24.198 -07 000000415 INF: FPGA: Recv ZSGSRD 30931 17-03-17 22:36:24.208 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:24.208 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:24.208 -07 000000382 INF: FPGA: Recv ZSGSRD 30931 17-03-17 22:36:24.218 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:24.218 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:24.218 -07 000000551 INF: FPGA: Recv ZSGSRD 30925 17-03-17 22:36:24.228 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:24.228 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:24.228 -07 000000462 INF: FPGA: Recv ZSGSRD 30928 17-03-17 22:36:24.238 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:24.238 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:24.238 -07 000000569 INF: FPGA: Recv ZSGSRD 30926 17-03-17 22:36:24.248 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:24.248 -07 000000623 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 22:36:24.248 -07 000000541 INF: FPGA: Recv ZPIEZORD 26942 17-03-17 22:36:24.258 -07 000000623 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:24.258 -07 000000623 INF: Z Motor: Piezo is near 37.6 V (nominally 0 to 100 V), expect near 46.3 V, since DAC is at 4.634 V. Piezo Error = -8.8 V. 17-03-17 22:36:24.258 -07 000000623 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.0 um, Read 10 ADC samples: Avg = 30930 (-138.2 uncal um), Error = 0.8 uncal um, Median = 30930 (-138.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 30925 (-138.2 uncal um), Max = 30934 (-138.2 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um) 17-03-17 22:36:24.258 -07 000000623 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30930, posNoise = 4, negNoise = 5 17-03-17 22:36:24.258 -07 000000623 INF: Z Motor: After move to -0.139025, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 22:36:24.258 -07 000000623 INF: Z Motor: Settle wait time = 1437 ms, measure time = 110 ms (allowed 150 ms), total time = 1547 ms 17-03-17 22:36:24.258 -07 000000623 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms 17-03-17 22:36:24.298 -07 000000623 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1592 ms 17-03-17 22:36:24.298 -07 000000623 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-17 22:36:24.298 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 22:36:24.298 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 22:36:24.298 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 22:36:24.298 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 22:36:24.298 -07 000000459 INF: Disarm and arm camera sensor 0: ROITrigger start. 17-03-17 22:36:24.298 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 22:36:24.298 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 22:36:24.298 -07 000000459 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start. 17-03-17 22:36:24.308 -07 000000459 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms. 17-03-17 22:36:24.308 -07 000000459 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start. 17-03-17 22:36:24.318 -07 000000459 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms. 17-03-17 22:36:24.318 -07 000000459 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms. 17-03-17 22:36:24.318 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera] 17-03-17 22:36:24.368 -07 000000459 INF: FPGA: Recv @CAMSNAP turning led on 40 17-03-17 22:36:24.568 -07 000000482 INF: FPGA: Recv @CAMSNAP img rdy 240 17-03-17 22:36:24.568 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240 17-03-17 22:36:24.568 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start. 17-03-17 22:36:24.568 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1201016592, 0x0, 559484976) start. 17-03-17 22:36:24.598 -07 000000569 INF: FPGA: Recv @CAMSNAP 280 17-03-17 22:36:24.608 -07 000000547 INF: FPGA: Recv CAMSNAP 17-03-17 22:36:24.608 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 284 ms overall 17-03-17 22:36:24.678 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1201016592, 0x0, 559484976) end. Duration was 117 ms. 17-03-17 22:36:24.678 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-17 22:36:24.688 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms. 17-03-17 22:36:24.688 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms. 17-03-17 22:36:24.708 -07 000000627 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 22:36:24.708 -07 000000480 INF: Autofocus start 17-03-17 22:36:24.708 -07 000000480 INF: MeasureProfile start 17-03-17 22:36:24.718 -07 000000623 INF: FPGA: Recv FOCMRRCUR 17-03-17 22:36:24.718 -07 000000627 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall 17-03-17 22:36:24.718 -07 000000627 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror] 17-03-17 22:36:24.728 -07 000000480 INF: MeasureProfile done 17-03-17 22:36:24.728 -07 000000480 INF: X=21 Z correction [um]=0.07706985 17-03-17 22:36:24.728 -07 000000480 INF: Autofocus finished 17-03-17 22:36:24.918 -07 000000593 INF: FPGA: Recv FOCMRRIMG 17-03-17 22:36:24.918 -07 000000627 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 202 ms overall 17-03-17 22:36:24.918 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.22412109375, Z-position -0.139024233555801. ---------- 17-03-17 22:36:24.928 -07 000000610 INF: Cycle 65 Tile 5 Exposure Settings A 455 G 219 T 219 C 455 17-03-17 22:36:24.928 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28899, sync = True, waitForSettling = True) 17-03-17 22:36:24.928 -07 000000610 INF: Z Motor: Moving to -0.132291 mm, started at -0.139024 mm, distance = 6.73 um 17-03-17 22:36:24.928 -07 000000610 INF: FPGA: Xmit ZDACW 28899\n [Z Motor] 17-03-17 22:36:24.928 -07 000000459 INF: FPGA: Recv ZDACW 17-03-17 22:36:24.938 -07 000000610 INF: FPGA: 'ZDACW 28899' command took 0 ms to send, 0 ms to get response, and 5 ms overall 17-03-17 22:36:24.938 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 22:36:24.938 -07 000000480 INF: FPGA: Recv ZDACR 28899 17-03-17 22:36:24.948 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:24.948 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-17 22:36:25.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:25.098 -07 000000541 INF: FPGA: Recv ZSGSRD 29885 17-03-17 22:36:25.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 22:36:25.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:25.108 -07 000000458 INF: FPGA: Recv ZSGSRD 29888 17-03-17 22:36:25.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:25.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:25.118 -07 000000576 INF: FPGA: Recv ZSGSRD 29883 17-03-17 22:36:25.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:25.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:25.128 -07 000000482 INF: FPGA: Recv ZSGSRD 29879 17-03-17 22:36:25.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:25.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:25.138 -07 000000382 INF: FPGA: Recv ZSGSRD 29889 17-03-17 22:36:25.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:25.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:25.148 -07 000000541 INF: FPGA: Recv ZSGSRD 29878 17-03-17 22:36:25.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:25.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:25.158 -07 000000458 INF: FPGA: Recv ZSGSRD 29879 17-03-17 22:36:25.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:25.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:25.168 -07 000000576 INF: FPGA: Recv ZSGSRD 29886 17-03-17 22:36:25.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:25.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:25.178 -07 000000459 INF: FPGA: Recv ZSGSRD 29882 17-03-17 22:36:25.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:25.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:25.188 -07 000000382 INF: FPGA: Recv ZSGSRD 29881 17-03-17 22:36:25.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:25.198 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 22:36:25.198 -07 000000627 INF: FPGA: Recv ZPIEZORD 25562 17-03-17 22:36:25.208 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:25.208 -07 000000610 INF: Z Motor: Piezo is near 34.6 V (nominally 0 to 100 V), expect near 44.1 V, since DAC is at 4.410 V. Piezo Error = -9.5 V. 17-03-17 22:36:25.208 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.3 um, Read 10 ADC samples: Avg = 29883 (-131.5 uncal um), Error = 0.8 uncal um, Median = 29882 (-131.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29878 (-131.5 uncal um), Max = 29889 (-131.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um) 17-03-17 22:36:25.208 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29883, posNoise = 6, negNoise = 5 17-03-17 22:36:25.208 -07 000000610 INF: Z Motor: After move to -0.132291, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 22:36:25.208 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms) 17-03-17 22:36:25.208 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 22:36:25.208 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 22:36:25.208 -07 000000547 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 22:36:25.208 -07 000000623 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 22:36:25.208 -07 000000593 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-17 22:36:25.208 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-17 22:36:25.208 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-17 22:36:25.208 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 22:36:25.208 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms. 17-03-17 22:36:25.208 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-17 22:36:25.208 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 22:36:25.208 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-17 22:36:25.218 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms. 17-03-17 22:36:25.218 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-17 22:36:25.218 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms. 17-03-17 22:36:25.218 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-17 22:36:25.228 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms. 17-03-17 22:36:25.228 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms. 17-03-17 22:36:25.228 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms. 17-03-17 22:36:25.228 -07 000000593 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms. 17-03-17 22:36:25.228 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 455 455 219 219 29076 150\n [Camera] 17-03-17 22:36:25.428 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-17 22:36:25.878 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 647 17-03-17 22:36:25.878 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 647 17-03-17 22:36:25.888 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 22:36:25.888 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 22:36:25.888 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) start. 17-03-17 22:36:25.888 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 647 17-03-17 22:36:25.888 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 647 17-03-17 22:36:25.888 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 22:36:25.888 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 22:36:25.888 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start. 17-03-17 22:36:26.078 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29076 840 17-03-17 22:36:26.128 -07 000000608 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 65, FrontChillerTemperature: 3.964938, 17-03-17 22:36:26.228 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP turning grn on 990 17-03-17 22:36:26.258 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 373 ms. 17-03-17 22:36:26.258 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms. 17-03-17 22:36:26.258 -07 000000623 INF: Camera: CopyActivePixFullImage start. 17-03-17 22:36:26.268 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 22:36:26.268 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) end. Duration was 380 ms. 17-03-17 22:36:26.268 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms. 17-03-17 22:36:26.268 -07 000000593 INF: Camera: CopyActivePixFullImage start. 17-03-17 22:36:26.268 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 22:36:26.268 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms. 17-03-17 22:36:26.268 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 384 ms. 17-03-17 22:36:26.448 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1209 17-03-17 22:36:26.448 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1209 17-03-17 22:36:26.448 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 22:36:26.448 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 22:36:26.448 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) start. 17-03-17 22:36:26.448 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1209 17-03-17 22:36:26.448 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1209 17-03-17 22:36:26.448 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 22:36:26.448 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 22:36:26.448 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 2620985504, 0x0, 418435064) start. 17-03-17 22:36:26.638 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP 1401 17-03-17 22:36:26.638 -07 000000482 INF: FPGA: Recv CAMDBLSNAP 17-03-17 22:36:26.638 -07 000000610 INF: FPGA: 'CAMDBLSNAP 455 455 219 219 29076 150' command took 4 ms to send, 1403 ms to get response, and 1410 ms overall 17-03-17 22:36:26.638 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503 17-03-17 22:36:26.638 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.22412109375, Z-Position -0.132298083443378. ------ 17-03-17 22:36:26.638 -07 000000541 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 22:36:26.638 -07 000000486 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.13871 mm 17-03-17 22:36:26.638 -07 000000486 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-17 22:36:26.648 -07 000000569 INF: FPGA: Recv FOCMRRCUR 17-03-17 22:36:26.648 -07 000000541 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 4 ms overall 17-03-17 22:36:26.648 -07 000000541 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror] 17-03-17 22:36:26.648 -07 000000547 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True) 17-03-17 22:36:26.648 -07 000000547 INF: Y Motor: Moving to 64.0626 mm, started at 63.2241 mm, delta = 0.8385 mm 17-03-17 22:36:26.648 -07 000000462 INF: Z Motor: Entering MoveAbsStepped (DAC = 30301, sync = True, waitForSettling = False) 17-03-17 22:36:26.648 -07 000000462 INF: Z Motor: Moving to -0.138709 mm, started at -0.132298 mm, distance = -6.41 um 17-03-17 22:36:26.658 -07 000000462 INF: FPGA: Xmit ZDACW 30301\n [Z Motor] 17-03-17 22:36:26.658 -07 000000576 INF: FPGA: Recv ZDACW 17-03-17 22:36:26.668 -07 000000462 INF: FPGA: 'ZDACW 30301' command took 0 ms to send, 0 ms to get response, and 16 ms overall 17-03-17 22:36:26.668 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 22:36:26.668 -07 000000415 INF: FPGA: Recv YRDPOS 129484 17-03-17 22:36:26.678 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 27 ms overall 17-03-17 22:36:26.678 -07 000000462 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 22:36:26.678 -07 000000547 INF: Y Motor: Encoder = 129484 = motor step 101159.4 = 63.2246 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 22:36:26.678 -07 000000576 INF: FPGA: Recv ZDACR 30301 17-03-17 22:36:26.678 -07 000000547 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-17 22:36:26.678 -07 000000547 INF: Y Motor: Moving 1341 steps-17 17-03-17 22:36:26.688 -07 000000462 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall 17-03-17 22:36:26.688 -07 000000547 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-17 22:36:26.688 -07 000000462 INF: Z Motor: MoveAbsStepped took 36 ms (did NOT wait for settling yet)) 17-03-17 22:36:26.848 -07 000000576 INF: FPGA: Recv FOCMRRFOC 17-03-17 22:36:26.848 -07 000000541 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 202 ms overall 17-03-17 22:36:26.848 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) end. Duration was 404 ms. 17-03-17 22:36:26.848 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 405 ms. 17-03-17 22:36:26.848 -07 000000480 INF: Camera: CopyActivePixFullImage start. 17-03-17 22:36:26.848 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 2620985504, 0x0, 418435064) end. Duration was 402 ms. 17-03-17 22:36:26.848 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms. 17-03-17 22:36:26.848 -07 000000459 INF: Camera: CopyActivePixFullImage start. 17-03-17 22:36:26.858 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-17 22:36:26.858 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms. 17-03-17 22:36:26.858 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 413 ms. 17-03-17 22:36:26.858 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms. 17-03-17 22:36:26.988 -07 000000623 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 22:36:26.988 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 64. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1026, R2=1057, Total=2083. Warn if over 250 bubbles per interval. 17-03-17 22:36:27.058 -07 000000415 INF: FPGA: Recv YMVTILE 17-03-17 22:36:27.058 -07 000000547 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 384 ms overall 17-03-17 22:36:27.098 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 22:36:27.108 -07 000000462 INF: FPGA: Recv YRDPOS 131189 17-03-17 22:36:27.108 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall 17-03-17 22:36:27.108 -07 000000547 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 22:36:27.108 -07 000000547 INF: Y Motor: Position error before settling (table move) = -11 encoder counts (-0.005 mm) 17-03-17 22:36:27.108 -07 000000547 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 385 ms, distance = 0.838 mm, average velocity = 2.178 mm/sec 17-03-17 22:36:28.058 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 22:36:28.058 -07 000000482 INF: FPGA: Recv YRDPOS 131189 17-03-17 22:36:28.068 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 22:36:28.068 -07 000000547 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 22:36:28.088 -07 000000547 INF: Y Motor: After move to 64.062607, error = -0.005478, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm 17-03-17 22:36:28.088 -07 000000547 INF: Y Motor: Position error after settling (table move) = -11 encoder counts (-0.005 mm), Delta during settling = 0 counts (0.000 mm) 17-03-17 22:36:28.088 -07 000000547 INF: Y Motor: Moved to 64.0571 after 1439 ms (table move) 17-03-17 22:36:28.088 -07 000000486 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138709 mm (DAC = 30301) 17-03-17 22:36:28.088 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:28.098 -07 000000480 INF: FPGA: Recv ZSGSRD 30891 17-03-17 22:36:28.098 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall 17-03-17 22:36:28.098 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:28.098 -07 000000551 INF: FPGA: Recv ZSGSRD 30881 17-03-17 22:36:28.108 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:28.108 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:28.108 -07 000000459 INF: FPGA: Recv ZSGSRD 30886 17-03-17 22:36:28.118 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:28.118 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:28.118 -07 000000623 INF: FPGA: Recv ZSGSRD 30885 17-03-17 22:36:28.128 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:28.128 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:28.128 -07 000000547 INF: FPGA: Recv ZSGSRD 30885 17-03-17 22:36:28.138 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:28.138 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:28.138 -07 000000627 INF: FPGA: Recv ZSGSRD 30888 17-03-17 22:36:28.148 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:28.148 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:28.148 -07 000000458 INF: FPGA: Recv ZSGSRD 30876 17-03-17 22:36:28.158 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:28.158 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:28.158 -07 000000623 INF: FPGA: Recv ZSGSRD 30883 17-03-17 22:36:28.168 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:28.168 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:28.168 -07 000000569 INF: FPGA: Recv ZSGSRD 30879 17-03-17 22:36:28.178 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:28.178 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:28.178 -07 000000593 INF: FPGA: Recv ZSGSRD 30882 17-03-17 22:36:28.188 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:28.188 -07 000000486 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 22:36:28.188 -07 000000382 INF: FPGA: Recv ZPIEZORD 26901 17-03-17 22:36:28.198 -07 000000486 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:28.198 -07 000000486 INF: Z Motor: Piezo is near 37.5 V (nominally 0 to 100 V), expect near 46.2 V, since DAC is at 4.624 V. Piezo Error = -8.8 V. 17-03-17 22:36:28.198 -07 000000486 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.7 um, Read 10 ADC samples: Avg = 30884 (-137.9 uncal um), Error = 0.8 uncal um, Median = 30884 (-137.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30876 (-137.9 uncal um), Max = 30891 (-138.0 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um) 17-03-17 22:36:28.198 -07 000000486 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30884, posNoise = 7, negNoise = 8 17-03-17 22:36:28.198 -07 000000486 INF: Z Motor: After move to -0.138709, error = -0.000020, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 22:36:28.198 -07 000000486 INF: Z Motor: Settle wait time = 1444 ms, measure time = 103 ms (allowed 150 ms), total time = 1547 ms 17-03-17 22:36:28.198 -07 000000486 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms 17-03-17 22:36:28.248 -07 000000486 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1601 ms 17-03-17 22:36:28.248 -07 000000486 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-17 22:36:28.248 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 22:36:28.248 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 22:36:28.248 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 22:36:28.248 -07 000000593 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 22:36:28.248 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger start. 17-03-17 22:36:28.248 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 22:36:28.248 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 22:36:28.248 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start. 17-03-17 22:36:28.258 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms. 17-03-17 22:36:28.258 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start. 17-03-17 22:36:28.268 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms. 17-03-17 22:36:28.268 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms. 17-03-17 22:36:28.268 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera] 17-03-17 22:36:28.318 -07 000000593 INF: FPGA: Recv @CAMSNAP turning led on 40 17-03-17 22:36:28.518 -07 000000551 INF: FPGA: Recv @CAMSNAP img rdy 240 17-03-17 22:36:28.518 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240 17-03-17 22:36:28.518 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start. 17-03-17 22:36:28.518 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2404847376, 0x0, 559484976) start. 17-03-17 22:36:28.558 -07 000000459 INF: FPGA: Recv @CAMSNAP 280 17-03-17 22:36:28.558 -07 000000576 INF: FPGA: Recv CAMSNAP 17-03-17 22:36:28.558 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 284 ms overall 17-03-17 22:36:28.638 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2404847376, 0x0, 559484976) end. Duration was 117 ms. 17-03-17 22:36:28.638 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-17 22:36:28.638 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms. 17-03-17 22:36:28.638 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 120 ms. 17-03-17 22:36:28.658 -07 000000608 INF: Autofocus start 17-03-17 22:36:28.658 -07 000000608 INF: MeasureProfile start 17-03-17 22:36:28.658 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 22:36:28.658 -07 000000547 INF: FPGA: Recv FOCMRRCUR 17-03-17 22:36:28.668 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall 17-03-17 22:36:28.668 -07 000000502 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror] 17-03-17 22:36:28.668 -07 000000608 INF: MeasureProfile done 17-03-17 22:36:28.668 -07 000000608 INF: X=12 Z correction [um]=0.03377635 17-03-17 22:36:28.668 -07 000000608 INF: Autofocus finished 17-03-17 22:36:28.868 -07 000000623 INF: FPGA: Recv FOCMRRIMG 17-03-17 22:36:28.868 -07 000000502 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall 17-03-17 22:36:28.868 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.05712890625, Z-position -0.13872871979728. ---------- 17-03-17 22:36:28.868 -07 000000610 INF: Cycle 65 Tile 6 Exposure Settings A 455 G 219 T 219 C 455 17-03-17 22:36:28.878 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28821, sync = True, waitForSettling = True) 17-03-17 22:36:28.878 -07 000000610 INF: Z Motor: Moving to -0.131934 mm, started at -0.138729 mm, distance = 6.79 um 17-03-17 22:36:28.878 -07 000000610 INF: FPGA: Xmit ZDACW 28821\n [Z Motor] 17-03-17 22:36:28.878 -07 000000593 INF: FPGA: Recv ZDACW 17-03-17 22:36:28.888 -07 000000610 INF: FPGA: 'ZDACW 28821' command took 0 ms to send, 0 ms to get response, and 7 ms overall 17-03-17 22:36:28.888 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 22:36:28.888 -07 000000551 INF: FPGA: Recv ZDACR 28821 17-03-17 22:36:28.898 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:28.898 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-17 22:36:29.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:29.048 -07 000000623 INF: FPGA: Recv ZSGSRD 29828 17-03-17 22:36:29.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 22:36:29.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:29.058 -07 000000462 INF: FPGA: Recv ZSGSRD 29830 17-03-17 22:36:29.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:29.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:29.068 -07 000000486 INF: FPGA: Recv ZSGSRD 29833 17-03-17 22:36:29.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:29.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:29.078 -07 000000458 INF: FPGA: Recv ZSGSRD 29823 17-03-17 22:36:29.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:29.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:29.088 -07 000000480 INF: FPGA: Recv ZSGSRD 29824 17-03-17 22:36:29.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:29.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:29.098 -07 000000576 INF: FPGA: Recv ZSGSRD 29832 17-03-17 22:36:29.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:29.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:29.108 -07 000000593 INF: FPGA: Recv ZSGSRD 29831 17-03-17 22:36:29.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:29.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:29.118 -07 000000486 INF: FPGA: Recv ZSGSRD 29826 17-03-17 22:36:29.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:29.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:29.128 -07 000000502 INF: FPGA: Recv ZSGSRD 29821 17-03-17 22:36:29.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:29.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:29.138 -07 000000462 INF: FPGA: Recv ZSGSRD 29827 17-03-17 22:36:29.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:29.148 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 22:36:29.148 -07 000000627 INF: FPGA: Recv ZPIEZORD 25507 17-03-17 22:36:29.158 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:29.158 -07 000000610 INF: Z Motor: Piezo is near 34.5 V (nominally 0 to 100 V), expect near 44.0 V, since DAC is at 4.398 V. Piezo Error = -9.5 V. 17-03-17 22:36:29.158 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.9 um, Read 10 ADC samples: Avg = 29828 (-131.2 uncal um), Error = 0.8 uncal um, Median = 29828 (-131.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29821 (-131.1 uncal um), Max = 29833 (-131.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um) 17-03-17 22:36:29.158 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29828, posNoise = 5, negNoise = 7 17-03-17 22:36:29.158 -07 000000610 INF: Z Motor: After move to -0.131934, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 22:36:29.158 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms) 17-03-17 22:36:29.158 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 22:36:29.158 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 22:36:29.158 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 22:36:29.158 -07 000000551 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-17 22:36:29.158 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 22:36:29.158 -07 000000593 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-17 22:36:29.158 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-17 22:36:29.158 -07 000000486 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 22:36:29.158 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 22:36:29.158 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-17 22:36:29.158 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms. 17-03-17 22:36:29.158 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-17 22:36:29.168 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms. 17-03-17 22:36:29.168 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-17 22:36:29.168 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms. 17-03-17 22:36:29.168 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-17 22:36:29.178 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms. 17-03-17 22:36:29.178 -07 000000551 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms. 17-03-17 22:36:29.178 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms. 17-03-17 22:36:29.178 -07 000000593 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms. 17-03-17 22:36:29.178 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 455 455 219 219 28998 150\n [Camera] 17-03-17 22:36:29.378 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-17 22:36:29.838 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 647 17-03-17 22:36:29.838 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 647 17-03-17 22:36:29.838 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 22:36:29.838 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 647 17-03-17 22:36:29.838 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 22:36:29.838 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) start. 17-03-17 22:36:29.838 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 647 17-03-17 22:36:29.848 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 22:36:29.848 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 22:36:29.848 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2719780968, 0x0, 418435064) start. 17-03-17 22:36:30.028 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28998 840 17-03-17 22:36:30.178 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning grn on 990 17-03-17 22:36:30.218 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) end. Duration was 376 ms. 17-03-17 22:36:30.218 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms. 17-03-17 22:36:30.218 -07 000000551 INF: Camera: CopyActivePixFullImage start. 17-03-17 22:36:30.218 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 22:36:30.218 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 381 ms. 17-03-17 22:36:30.218 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2719780968, 0x0, 418435064) end. Duration was 375 ms. 17-03-17 22:36:30.218 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms. 17-03-17 22:36:30.218 -07 000000576 INF: Camera: CopyActivePixFullImage start. 17-03-17 22:36:30.228 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-17 22:36:30.228 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms. 17-03-17 22:36:30.398 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1209 17-03-17 22:36:30.398 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1209 17-03-17 22:36:30.398 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 22:36:30.528 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1209 17-03-17 22:36:30.528 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1209 17-03-17 22:36:30.528 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 22:36:30.528 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 22:36:30.528 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 2755203232, 0x0, 391868352) start. 17-03-17 22:36:30.528 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 22:36:30.528 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) start. 17-03-17 22:36:30.588 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP 1401 17-03-17 22:36:30.588 -07 000000593 INF: FPGA: Recv CAMDBLSNAP 17-03-17 22:36:30.588 -07 000000610 INF: FPGA: 'CAMDBLSNAP 455 455 219 219 28998 150' command took 2 ms to send, 1404 ms to get response, and 1409 ms overall 17-03-17 22:36:30.588 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503 17-03-17 22:36:30.588 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.05712890625, Z-Position -0.131944751775581. ------ 17-03-17 22:36:30.588 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 22:36:30.588 -07 000000415 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.13827 mm 17-03-17 22:36:30.588 -07 000000415 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-17 22:36:30.598 -07 000000623 INF: Z Motor: Entering MoveAbsStepped (DAC = 30205, sync = True, waitForSettling = False) 17-03-17 22:36:30.598 -07 000000623 INF: Z Motor: Moving to -0.138270 mm, started at -0.131945 mm, distance = -6.32 um 17-03-17 22:36:30.598 -07 000000576 INF: FPGA: Recv FOCMRRCUR 17-03-17 22:36:30.598 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall 17-03-17 22:36:30.598 -07 000000623 INF: FPGA: Xmit ZDACW 30205\n [Z Motor] 17-03-17 22:36:30.598 -07 000000627 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True) 17-03-17 22:36:30.598 -07 000000627 INF: Y Motor: Moving to 64.8926 mm, started at 64.0571 mm, delta = 0.8355 mm 17-03-17 22:36:30.598 -07 000000547 INF: FPGA: Recv ZDACW 17-03-17 22:36:30.608 -07 000000623 INF: FPGA: 'ZDACW 30205' command took 0 ms to send, 0 ms to get response, and 7 ms overall 17-03-17 22:36:30.608 -07 000000608 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror] 17-03-17 22:36:30.618 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 22:36:30.618 -07 000000576 INF: FPGA: Recv YRDPOS 131189 17-03-17 22:36:30.628 -07 000000623 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 22:36:30.628 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 26 ms overall 17-03-17 22:36:30.628 -07 000000627 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 22:36:30.628 -07 000000627 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-17 22:36:30.628 -07 000000627 INF: Y Motor: Moving 1337 steps-11 17-03-17 22:36:30.628 -07 000000462 INF: FPGA: Recv ZDACR 30205 17-03-17 22:36:30.638 -07 000000623 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall 17-03-17 22:36:30.638 -07 000000623 INF: Z Motor: MoveAbsStepped took 37 ms (did NOT wait for settling yet)) 17-03-17 22:36:30.638 -07 000000627 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-17 22:36:30.808 -07 000000576 INF: FPGA: Recv FOCMRRFOC 17-03-17 22:36:30.808 -07 000000608 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 209 ms overall 17-03-17 22:36:30.928 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) end. Duration was 396 ms. 17-03-17 22:36:30.928 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms. 17-03-17 22:36:30.928 -07 000000459 INF: Camera: CopyActivePixFullImage start. 17-03-17 22:36:30.928 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 2755203232, 0x0, 391868352) end. Duration was 403 ms. 17-03-17 22:36:30.928 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 404 ms. 17-03-17 22:36:30.928 -07 000000541 INF: Camera: CopyActivePixFullImage start. 17-03-17 22:36:30.928 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 22:36:30.938 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 22:36:30.938 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 538 ms. 17-03-17 22:36:30.938 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms. 17-03-17 22:36:31.018 -07 000000458 INF: FPGA: Recv YMVTILE 17-03-17 22:36:31.018 -07 000000627 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 387 ms overall 17-03-17 22:36:31.048 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 22:36:31.058 -07 000000541 INF: FPGA: Recv YRDPOS 132872 17-03-17 22:36:31.058 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall 17-03-17 22:36:31.058 -07 000000627 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 22:36:31.058 -07 000000627 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm) 17-03-17 22:36:31.058 -07 000000627 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 389 ms, distance = 0.835 mm, average velocity = 2.148 mm/sec 17-03-17 22:36:31.488 -07 000000475 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 65, FrontChillerTemperature: 3.96762, 17-03-17 22:36:31.988 -07 000000541 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 22:36:31.988 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 64. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1026, R2=1057, Total=2083. Warn if over 250 bubbles per interval. 17-03-17 22:36:32.008 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 22:36:32.008 -07 000000480 INF: FPGA: Recv YRDPOS 132872 17-03-17 22:36:32.018 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 22:36:32.018 -07 000000627 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 22:36:32.038 -07 000000627 INF: Y Motor: After move to 64.892609, error = -0.013702, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm 17-03-17 22:36:32.038 -07 000000627 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm) 17-03-17 22:36:32.038 -07 000000627 INF: Y Motor: Moved to 64.8789 after 1442 ms (table move) 17-03-17 22:36:32.038 -07 000000415 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138270 mm (DAC = 30205) 17-03-17 22:36:32.038 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:32.048 -07 000000482 INF: FPGA: Recv ZSGSRD 30827 17-03-17 22:36:32.048 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall 17-03-17 22:36:32.048 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:32.048 -07 000000459 INF: FPGA: Recv ZSGSRD 30809 17-03-17 22:36:32.058 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall 17-03-17 22:36:32.058 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:32.058 -07 000000623 INF: FPGA: Recv ZSGSRD 30807 17-03-17 22:36:32.068 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:32.068 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:32.068 -07 000000551 INF: FPGA: Recv ZSGSRD 30821 17-03-17 22:36:32.078 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:32.078 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:32.078 -07 000000627 INF: FPGA: Recv ZSGSRD 30815 17-03-17 22:36:32.088 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:32.088 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:32.088 -07 000000569 INF: FPGA: Recv ZSGSRD 30822 17-03-17 22:36:32.098 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:32.098 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:32.098 -07 000000459 INF: FPGA: Recv ZSGSRD 30810 17-03-17 22:36:32.108 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:32.108 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:32.108 -07 000000438 INF: FPGA: Recv ZSGSRD 30806 17-03-17 22:36:32.118 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:32.118 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:32.118 -07 000000462 INF: FPGA: Recv ZSGSRD 30814 17-03-17 22:36:32.128 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:32.128 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:32.128 -07 000000458 INF: FPGA: Recv ZSGSRD 30818 17-03-17 22:36:32.138 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:32.138 -07 000000415 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 22:36:32.138 -07 000000569 INF: FPGA: Recv ZPIEZORD 26785 17-03-17 22:36:32.148 -07 000000415 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:32.148 -07 000000415 INF: Z Motor: Piezo is near 37.2 V (nominally 0 to 100 V), expect near 46.1 V, since DAC is at 4.609 V. Piezo Error = -8.9 V. 17-03-17 22:36:32.148 -07 000000415 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.3 um, Read 10 ADC samples: Avg = 30815 (-137.5 uncal um), Error = 0.8 uncal um, Median = 30814 (-137.5 uncal um), StdDev = 7 (0.0 uncal um), Range = 21 (0.1 uncal um), Min = 30806 (-137.4 uncal um), Max = 30827 (-137.6 uncal um), Pos Noise = 12 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um) 17-03-17 22:36:32.148 -07 000000415 INF: Z Motor: ADC noise = 12, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30815, posNoise = 12, negNoise = 9 17-03-17 22:36:32.148 -07 000000415 INF: Z Motor: After move to -0.138270, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 22:36:32.148 -07 000000415 INF: Z Motor: Settle wait time = 1446 ms, measure time = 102 ms (allowed 150 ms), total time = 1548 ms 17-03-17 22:36:32.148 -07 000000415 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms 17-03-17 22:36:32.198 -07 000000415 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1600 ms 17-03-17 22:36:32.198 -07 000000415 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-17 22:36:32.198 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 22:36:32.198 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 22:36:32.198 -07 000000541 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 22:36:32.198 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 22:36:32.198 -07 000000458 INF: Disarm and arm camera sensor 0: ROITrigger start. 17-03-17 22:36:32.198 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 22:36:32.198 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 22:36:32.198 -07 000000458 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start. 17-03-17 22:36:32.208 -07 000000458 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms. 17-03-17 22:36:32.208 -07 000000458 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start. 17-03-17 22:36:32.218 -07 000000458 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms. 17-03-17 22:36:32.218 -07 000000458 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms. 17-03-17 22:36:32.218 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera] 17-03-17 22:36:32.268 -07 000000593 INF: FPGA: Recv @CAMSNAP turning led on 40 17-03-17 22:36:32.468 -07 000000415 INF: FPGA: Recv @CAMSNAP img rdy 240 17-03-17 22:36:32.468 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240 17-03-17 22:36:32.468 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start. 17-03-17 22:36:32.468 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1406045800, 0x0, 559484976) start. 17-03-17 22:36:32.498 -07 000000551 INF: FPGA: Recv @CAMSNAP 280 17-03-17 22:36:32.508 -07 000000541 INF: FPGA: Recv CAMSNAP 17-03-17 22:36:32.508 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 284 ms overall 17-03-17 22:36:32.578 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1406045800, 0x0, 559484976) end. Duration was 115 ms. 17-03-17 22:36:32.578 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-17 22:36:32.578 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms. 17-03-17 22:36:32.578 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms. 17-03-17 22:36:32.608 -07 000000576 INF: Autofocus start 17-03-17 22:36:32.608 -07 000000576 INF: MeasureProfile start 17-03-17 22:36:32.608 -07 000000623 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 22:36:32.618 -07 000000541 INF: FPGA: Recv FOCMRRCUR 17-03-17 22:36:32.618 -07 000000623 INF: FPGA: 'FOCMRRCUR 80' command took 3 ms to send, 1 ms to get response, and 7 ms overall 17-03-17 22:36:32.618 -07 000000623 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror] 17-03-17 22:36:32.618 -07 000000576 INF: MeasureProfile done 17-03-17 22:36:32.618 -07 000000576 INF: X=64 Z correction [um]=0.2839165 17-03-17 22:36:32.618 -07 000000576 INF: Autofocus finished 17-03-17 22:36:32.818 -07 000000482 INF: FPGA: Recv FOCMRRIMG 17-03-17 22:36:32.818 -07 000000623 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 202 ms overall 17-03-17 22:36:32.818 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87890625, Z-position -0.138285449159499. ---------- 17-03-17 22:36:32.818 -07 000000610 INF: Cycle 65 Tile 7 Exposure Settings A 455 G 219 T 219 C 455 17-03-17 22:36:32.828 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28779, sync = True, waitForSettling = True) 17-03-17 22:36:32.828 -07 000000610 INF: Z Motor: Moving to -0.131742 mm, started at -0.138285 mm, distance = 6.54 um 17-03-17 22:36:32.838 -07 000000610 INF: FPGA: Xmit ZDACW 28779\n [Z Motor] 17-03-17 22:36:32.838 -07 000000480 INF: FPGA: Recv ZDACW 17-03-17 22:36:32.848 -07 000000610 INF: FPGA: 'ZDACW 28779' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 22:36:32.848 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 22:36:32.848 -07 000000547 INF: FPGA: Recv ZDACR 28779 17-03-17 22:36:32.858 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:32.858 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-17 22:36:33.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:33.008 -07 000000458 INF: FPGA: Recv ZSGSRD 29792 17-03-17 22:36:33.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 22:36:33.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:33.018 -07 000000608 INF: FPGA: Recv ZSGSRD 29798 17-03-17 22:36:33.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:33.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:33.028 -07 000000541 INF: FPGA: Recv ZSGSRD 29800 17-03-17 22:36:33.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:33.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:33.038 -07 000000480 INF: FPGA: Recv ZSGSRD 29798 17-03-17 22:36:33.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:33.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:33.048 -07 000000569 INF: FPGA: Recv ZSGSRD 29796 17-03-17 22:36:33.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:33.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:33.058 -07 000000627 INF: FPGA: Recv ZSGSRD 29794 17-03-17 22:36:33.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:33.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:33.068 -07 000000382 INF: FPGA: Recv ZSGSRD 29806 17-03-17 22:36:33.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:33.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:33.078 -07 000000593 INF: FPGA: Recv ZSGSRD 29798 17-03-17 22:36:33.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:33.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:33.088 -07 000000459 INF: FPGA: Recv ZSGSRD 29792 17-03-17 22:36:33.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:33.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:33.098 -07 000000502 INF: FPGA: Recv ZSGSRD 29799 17-03-17 22:36:33.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:33.108 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 22:36:33.108 -07 000000458 INF: FPGA: Recv ZPIEZORD 25466 17-03-17 22:36:33.118 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:33.118 -07 000000610 INF: Z Motor: Piezo is near 34.4 V (nominally 0 to 100 V), expect near 43.9 V, since DAC is at 4.391 V. Piezo Error = -9.5 V. 17-03-17 22:36:33.118 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.7 um, Read 10 ADC samples: Avg = 29797 (-131.0 uncal um), Error = 0.8 uncal um, Median = 29798 (-131.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 29792 (-130.9 uncal um), Max = 29806 (-131.0 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um) 17-03-17 22:36:33.118 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29797, posNoise = 9, negNoise = 5 17-03-17 22:36:33.118 -07 000000610 INF: Z Motor: After move to -0.131742, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 22:36:33.118 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms) 17-03-17 22:36:33.118 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 22:36:33.118 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 22:36:33.118 -07 000000593 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 22:36:33.118 -07 000000623 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 22:36:33.118 -07 000000547 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-17 22:36:33.118 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 22:36:33.118 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-17 22:36:33.118 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-17 22:36:33.118 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 3 ms. 17-03-17 22:36:33.118 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-17 22:36:33.118 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms. 17-03-17 22:36:33.118 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-17 22:36:33.128 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms. 17-03-17 22:36:33.128 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-17 22:36:33.128 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms. 17-03-17 22:36:33.128 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-17 22:36:33.138 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms. 17-03-17 22:36:33.138 -07 000000547 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms. 17-03-17 22:36:33.138 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms. 17-03-17 22:36:33.138 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms. 17-03-17 22:36:33.138 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 455 455 219 219 28956 150\n [Camera] 17-03-17 22:36:33.338 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-17 22:36:33.798 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 650 17-03-17 22:36:33.798 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 650 17-03-17 22:36:33.798 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 22:36:33.798 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 650 17-03-17 22:36:33.798 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 650 17-03-17 22:36:33.798 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 22:36:33.798 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 22:36:33.798 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 1425127184, 0x0, 391868352) start. 17-03-17 22:36:33.808 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 22:36:33.808 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start. 17-03-17 22:36:33.988 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28956 840 17-03-17 22:36:34.138 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP turning grn on 990 17-03-17 22:36:34.178 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 368 ms. 17-03-17 22:36:34.178 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 368 ms. 17-03-17 22:36:34.178 -07 000000458 INF: Camera: CopyActivePixFullImage start. 17-03-17 22:36:34.178 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 1425127184, 0x0, 391868352) end. Duration was 372 ms. 17-03-17 22:36:34.178 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms. 17-03-17 22:36:34.178 -07 000000475 INF: Camera: CopyActivePixFullImage start. 17-03-17 22:36:34.178 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-17 22:36:34.178 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-17 22:36:34.178 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms. 17-03-17 22:36:34.188 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 385 ms. 17-03-17 22:36:34.358 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1209 17-03-17 22:36:34.358 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1209 17-03-17 22:36:34.358 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 22:36:34.358 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1209 17-03-17 22:36:34.358 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1209 17-03-17 22:36:34.358 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 22:36:34.358 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 22:36:34.358 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start. 17-03-17 22:36:34.368 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 22:36:34.368 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 1420721880, 0x0, 418435064) start. 17-03-17 22:36:34.548 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP 1402 17-03-17 22:36:34.548 -07 000000627 INF: FPGA: Recv CAMDBLSNAP 17-03-17 22:36:34.548 -07 000000610 INF: FPGA: 'CAMDBLSNAP 455 455 219 219 28956 150' command took 2 ms to send, 1402 ms to get response, and 1408 ms overall 17-03-17 22:36:34.548 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503 17-03-17 22:36:34.548 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.87890625, Z-Position -0.131745601199186. ------ 17-03-17 22:36:34.548 -07 000000593 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 22:36:34.548 -07 000000480 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.13826 mm 17-03-17 22:36:34.548 -07 000000480 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-17 22:36:34.558 -07 000000462 INF: Z Motor: Entering MoveAbsStepped (DAC = 30202, sync = True, waitForSettling = False) 17-03-17 22:36:34.558 -07 000000462 INF: Z Motor: Moving to -0.138256 mm, started at -0.131746 mm, distance = -6.51 um 17-03-17 22:36:34.558 -07 000000627 INF: FPGA: Recv FOCMRRCUR 17-03-17 22:36:34.558 -07 000000593 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall 17-03-17 22:36:34.558 -07 000000462 INF: FPGA: Xmit ZDACW 30202\n [Z Motor] 17-03-17 22:36:34.558 -07 000000475 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True) 17-03-17 22:36:34.558 -07 000000475 INF: Y Motor: Moving to 65.7226 mm, started at 64.8789 mm, delta = 0.8437 mm 17-03-17 22:36:34.558 -07 000000569 INF: FPGA: Recv ZDACW 17-03-17 22:36:34.568 -07 000000462 INF: FPGA: 'ZDACW 30202' command took 0 ms to send, 0 ms to get response, and 8 ms overall 17-03-17 22:36:34.568 -07 000000593 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror] 17-03-17 22:36:34.578 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 22:36:34.578 -07 000000623 INF: FPGA: Recv YRDPOS 132873 17-03-17 22:36:34.588 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 27 ms overall 17-03-17 22:36:34.588 -07 000000475 INF: Y Motor: Encoder = 132873 = motor step 103807.0 = 64.8794 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 22:36:34.588 -07 000000462 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 22:36:34.588 -07 000000486 INF: FPGA: Recv ZDACR 30202 17-03-17 22:36:34.588 -07 000000475 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-17 22:36:34.588 -07 000000475 INF: Y Motor: Moving 1349 steps-28 17-03-17 22:36:34.598 -07 000000462 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall 17-03-17 22:36:34.598 -07 000000462 INF: Z Motor: MoveAbsStepped took 38 ms (did NOT wait for settling yet)) 17-03-17 22:36:34.598 -07 000000475 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-17 22:36:34.758 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 399 ms. 17-03-17 22:36:34.758 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms. 17-03-17 22:36:34.758 -07 000000576 INF: Camera: CopyActivePixFullImage start. 17-03-17 22:36:34.758 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 1420721880, 0x0, 418435064) end. Duration was 398 ms. 17-03-17 22:36:34.758 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms. 17-03-17 22:36:34.758 -07 000000551 INF: Camera: CopyActivePixFullImage start. 17-03-17 22:36:34.768 -07 000000459 INF: FPGA: Recv FOCMRRFOC 17-03-17 22:36:34.768 -07 000000593 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 210 ms overall 17-03-17 22:36:34.768 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms. 17-03-17 22:36:34.768 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 413 ms. 17-03-17 22:36:34.768 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms. 17-03-17 22:36:34.778 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 417 ms. 17-03-17 22:36:34.968 -07 000000569 INF: FPGA: Recv YMVTILE 17-03-17 22:36:34.968 -07 000000475 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 383 ms overall 17-03-17 22:36:35.008 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 22:36:35.018 -07 000000593 INF: FPGA: Recv YRDPOS 134582 17-03-17 22:36:35.018 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 4 ms overall 17-03-17 22:36:35.018 -07 000000475 INF: Y Motor: Encoder = 134582 = motor step 105142.2 = 65.7139 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 22:36:35.018 -07 000000475 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm) 17-03-17 22:36:35.018 -07 000000475 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 384 ms, distance = 0.844 mm, average velocity = 2.197 mm/sec 17-03-17 22:36:35.968 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 22:36:35.968 -07 000000482 INF: FPGA: Recv YRDPOS 134583 17-03-17 22:36:35.978 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 22:36:35.978 -07 000000475 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 22:36:35.998 -07 000000475 INF: Y Motor: After move to 65.722610, error = -0.008255, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm 17-03-17 22:36:35.998 -07 000000475 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 1 counts (0.000 mm) 17-03-17 22:36:35.998 -07 000000475 INF: Y Motor: Moved to 65.7144 after 1444 ms (table move) 17-03-17 22:36:36.008 -07 000000480 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138256 mm (DAC = 30202) 17-03-17 22:36:36.008 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:36.008 -07 000000502 INF: FPGA: Recv ZSGSRD 30813 17-03-17 22:36:36.018 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall 17-03-17 22:36:36.018 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:36.018 -07 000000576 INF: FPGA: Recv ZSGSRD 30816 17-03-17 22:36:36.028 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:36.028 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:36.028 -07 000000608 INF: FPGA: Recv ZSGSRD 30815 17-03-17 22:36:36.038 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:36.038 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:36.038 -07 000000547 INF: FPGA: Recv ZSGSRD 30812 17-03-17 22:36:36.048 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:36.048 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:36.048 -07 000000475 INF: FPGA: Recv ZSGSRD 30813 17-03-17 22:36:36.058 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:36.058 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:36.058 -07 000000502 INF: FPGA: Recv ZSGSRD 30811 17-03-17 22:36:36.068 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:36.068 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:36.068 -07 000000593 INF: FPGA: Recv ZSGSRD 30806 17-03-17 22:36:36.078 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:36.078 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:36.078 -07 000000382 INF: FPGA: Recv ZSGSRD 30804 17-03-17 22:36:36.088 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:36.088 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:36.088 -07 000000459 INF: FPGA: Recv ZSGSRD 30812 17-03-17 22:36:36.098 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:36.098 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:36.098 -07 000000576 INF: FPGA: Recv ZSGSRD 30813 17-03-17 22:36:36.108 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:36.108 -07 000000480 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 22:36:36.108 -07 000000502 INF: FPGA: Recv ZPIEZORD 26820 17-03-17 22:36:36.118 -07 000000480 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:36.118 -07 000000480 INF: Z Motor: Piezo is near 37.3 V (nominally 0 to 100 V), expect near 46.1 V, since DAC is at 4.609 V. Piezo Error = -8.8 V. 17-03-17 22:36:36.118 -07 000000480 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.3 um, Read 10 ADC samples: Avg = 30812 (-137.5 uncal um), Error = 0.8 uncal um, Median = 30812 (-137.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30804 (-137.4 uncal um), Max = 30816 (-137.5 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um) 17-03-17 22:36:36.118 -07 000000480 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30812, posNoise = 4, negNoise = 8 17-03-17 22:36:36.118 -07 000000480 INF: Z Motor: After move to -0.138256, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 22:36:36.118 -07 000000480 INF: Z Motor: Settle wait time = 1450 ms, measure time = 109 ms (allowed 150 ms), total time = 1559 ms 17-03-17 22:36:36.118 -07 000000480 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms 17-03-17 22:36:36.168 -07 000000480 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1611 ms 17-03-17 22:36:36.168 -07 000000480 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-17 22:36:36.168 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 22:36:36.168 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 22:36:36.168 -07 000000486 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 22:36:36.168 -07 000000475 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 22:36:36.168 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger start. 17-03-17 22:36:36.168 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 22:36:36.168 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 22:36:36.168 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start. 17-03-17 22:36:36.178 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms. 17-03-17 22:36:36.178 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start. 17-03-17 22:36:36.188 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms. 17-03-17 22:36:36.188 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms. 17-03-17 22:36:36.188 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera] 17-03-17 22:36:36.238 -07 000000475 INF: FPGA: Recv @CAMSNAP turning led on 40 17-03-17 22:36:36.438 -07 000000462 INF: FPGA: Recv @CAMSNAP img rdy 240 17-03-17 22:36:36.438 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240 17-03-17 22:36:36.438 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start. 17-03-17 22:36:36.438 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1473019208, 0x0, 559484976) start. 17-03-17 22:36:36.478 -07 000000486 INF: FPGA: Recv @CAMSNAP 280 17-03-17 22:36:36.478 -07 000000627 INF: FPGA: Recv CAMSNAP 17-03-17 22:36:36.478 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 285 ms overall 17-03-17 22:36:36.558 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1473019208, 0x0, 559484976) end. Duration was 120 ms. 17-03-17 22:36:36.558 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-17 22:36:36.558 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms. 17-03-17 22:36:36.558 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 123 ms. 17-03-17 22:36:36.578 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 22:36:36.578 -07 000000486 INF: Autofocus start 17-03-17 22:36:36.578 -07 000000486 INF: MeasureProfile start 17-03-17 22:36:36.578 -07 000000382 INF: FPGA: Recv FOCMRRCUR 17-03-17 22:36:36.588 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-17 22:36:36.588 -07 000000576 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror] 17-03-17 22:36:36.588 -07 000000486 INF: MeasureProfile done 17-03-17 22:36:36.588 -07 000000486 INF: X=32 Z correction [um]=0.1299841 17-03-17 22:36:36.588 -07 000000486 INF: Autofocus finished 17-03-17 22:36:36.788 -07 000000627 INF: FPGA: Recv FOCMRRIMG 17-03-17 22:36:36.788 -07 000000576 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall 17-03-17 22:36:36.788 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.71435546875, Z-position -0.138266176523074. ---------- 17-03-17 22:36:36.798 -07 000000610 INF: Cycle 65 Tile 8 Exposure Settings A 455 G 219 T 219 C 455 17-03-17 22:36:36.798 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28743, sync = True, waitForSettling = True) 17-03-17 22:36:36.798 -07 000000610 INF: Z Motor: Moving to -0.131577 mm, started at -0.138266 mm, distance = 6.69 um 17-03-17 22:36:36.798 -07 000000610 INF: FPGA: Xmit ZDACW 28743\n [Z Motor] 17-03-17 22:36:36.798 -07 000000551 INF: FPGA: Recv ZDACW 17-03-17 22:36:36.808 -07 000000610 INF: FPGA: 'ZDACW 28743' command took 0 ms to send, 0 ms to get response, and 7 ms overall 17-03-17 22:36:36.808 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 22:36:36.808 -07 000000623 INF: FPGA: Recv ZDACR 28743 17-03-17 22:36:36.818 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:36.818 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-17 22:36:36.858 -07 000000415 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 65, FrontChillerTemperature: 3.960826, 17-03-17 22:36:36.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:36.968 -07 000000486 INF: FPGA: Recv ZSGSRD 29769 17-03-17 22:36:36.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 22:36:36.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:36.978 -07 000000608 INF: FPGA: Recv ZSGSRD 29775 17-03-17 22:36:36.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:36.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:36.988 -07 000000438 INF: FPGA: Recv ZSGSRD 29774 17-03-17 22:36:36.988 -07 000000486 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 22:36:36.988 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 64. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1026, R2=1057, Total=2083. Warn if over 250 bubbles per interval. 17-03-17 22:36:36.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:36.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:36.998 -07 000000608 INF: FPGA: Recv ZSGSRD 29765 17-03-17 22:36:37.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:37.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:37.008 -07 000000438 INF: FPGA: Recv ZSGSRD 29772 17-03-17 22:36:37.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:37.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:37.018 -07 000000576 INF: FPGA: Recv ZSGSRD 29778 17-03-17 22:36:37.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:37.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:37.028 -07 000000475 INF: FPGA: Recv ZSGSRD 29775 17-03-17 22:36:37.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:37.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:37.038 -07 000000547 INF: FPGA: Recv ZSGSRD 29772 17-03-17 22:36:37.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:37.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:37.048 -07 000000593 INF: FPGA: Recv ZSGSRD 29768 17-03-17 22:36:37.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:37.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:37.058 -07 000000486 INF: FPGA: Recv ZSGSRD 29775 17-03-17 22:36:37.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:37.068 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 22:36:37.068 -07 000000541 INF: FPGA: Recv ZPIEZORD 25457 17-03-17 22:36:37.078 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:37.078 -07 000000610 INF: Z Motor: Piezo is near 34.4 V (nominally 0 to 100 V), expect near 43.9 V, since DAC is at 4.386 V. Piezo Error = -9.5 V. 17-03-17 22:36:37.078 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.6 um, Read 10 ADC samples: Avg = 29772 (-130.8 uncal um), Error = 0.8 uncal um, Median = 29773 (-130.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29765 (-130.8 uncal um), Max = 29778 (-130.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um) 17-03-17 22:36:37.078 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29772, posNoise = 6, negNoise = 7 17-03-17 22:36:37.078 -07 000000610 INF: Z Motor: After move to -0.131577, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 22:36:37.078 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms) 17-03-17 22:36:37.078 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 22:36:37.078 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 22:36:37.078 -07 000000486 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 22:36:37.078 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 22:36:37.078 -07 000000475 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-17 22:36:37.078 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 22:36:37.078 -07 000000627 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-17 22:36:37.078 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-17 22:36:37.078 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 22:36:37.078 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-17 22:36:37.078 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms. 17-03-17 22:36:37.078 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-17 22:36:37.088 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms. 17-03-17 22:36:37.088 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-17 22:36:37.088 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms. 17-03-17 22:36:37.088 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-17 22:36:37.088 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms. 17-03-17 22:36:37.088 -07 000000475 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms. 17-03-17 22:36:37.098 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms. 17-03-17 22:36:37.098 -07 000000627 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms. 17-03-17 22:36:37.098 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 455 455 219 219 28920 150\n [Camera] 17-03-17 22:36:37.298 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-17 22:36:37.748 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 647 17-03-17 22:36:37.748 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 647 17-03-17 22:36:37.758 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 22:36:37.758 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 647 17-03-17 22:36:37.758 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 647 17-03-17 22:36:37.758 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 22:36:37.758 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 22:36:37.758 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start. 17-03-17 22:36:37.758 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 22:36:37.758 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start. 17-03-17 22:36:37.948 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28920 840 17-03-17 22:36:38.098 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP turning grn on 991 17-03-17 22:36:38.128 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 373 ms. 17-03-17 22:36:38.128 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms. 17-03-17 22:36:38.128 -07 000000486 INF: Camera: CopyActivePixFullImage start. 17-03-17 22:36:38.128 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 371 ms. 17-03-17 22:36:38.128 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms. 17-03-17 22:36:38.128 -07 000000480 INF: Camera: CopyActivePixFullImage start. 17-03-17 22:36:38.138 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms. 17-03-17 22:36:38.138 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms. 17-03-17 22:36:38.138 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms. 17-03-17 22:36:38.148 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms. 17-03-17 22:36:38.318 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1209 17-03-17 22:36:38.318 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1209 17-03-17 22:36:38.318 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 22:36:38.428 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1209 17-03-17 22:36:38.428 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1209 17-03-17 22:36:38.428 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 22:36:38.438 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 22:36:38.438 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start. 17-03-17 22:36:38.438 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 22:36:38.438 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1406045800, 0x0, 418435064) start. 17-03-17 22:36:38.508 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP 1402 17-03-17 22:36:38.508 -07 000000623 INF: FPGA: Recv CAMDBLSNAP 17-03-17 22:36:38.508 -07 000000610 INF: FPGA: 'CAMDBLSNAP 455 455 219 219 28920 150' command took 4 ms to send, 1402 ms to get response, and 1408 ms overall 17-03-17 22:36:38.508 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503 17-03-17 22:36:38.508 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.71435546875, Z-Position -0.131584995895642. ------ 17-03-17 22:36:38.508 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 22:36:38.508 -07 000000627 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.13801 mm 17-03-17 22:36:38.508 -07 000000627 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-17 22:36:38.518 -07 000000458 INF: Z Motor: Entering MoveAbsStepped (DAC = 30148, sync = True, waitForSettling = False) 17-03-17 22:36:38.518 -07 000000458 INF: Z Motor: Moving to -0.138009 mm, started at -0.131585 mm, distance = -6.42 um 17-03-17 22:36:38.518 -07 000000458 INF: FPGA: Xmit ZDACW 30148\n [Z Motor] 17-03-17 22:36:38.518 -07 000000593 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True) 17-03-17 22:36:38.518 -07 000000593 INF: Y Motor: Moving to 66.5526 mm, started at 65.7144 mm, delta = 0.8382 mm 17-03-17 22:36:38.518 -07 000000551 INF: FPGA: Recv FOCMRRCUR 17-03-17 22:36:38.518 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 5 ms overall 17-03-17 22:36:38.518 -07 000000462 INF: FPGA: Recv ZDACW 17-03-17 22:36:38.528 -07 000000458 INF: FPGA: 'ZDACW 30148' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:38.528 -07 000000569 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror] 17-03-17 22:36:38.538 -07 000000593 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 22:36:38.538 -07 000000462 INF: FPGA: Recv YRDPOS 134583 17-03-17 22:36:38.548 -07 000000593 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 28 ms overall 17-03-17 22:36:38.548 -07 000000593 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 22:36:38.548 -07 000000593 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-17 22:36:38.548 -07 000000593 INF: Y Motor: Moving 1341 steps-18 17-03-17 22:36:38.548 -07 000000458 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 22:36:38.548 -07 000000576 INF: FPGA: Recv ZDACR 30148 17-03-17 22:36:38.558 -07 000000593 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-17 22:36:38.558 -07 000000458 INF: FPGA: 'ZDACR' command took 3 ms to send, 0 ms to get response, and 29 ms overall 17-03-17 22:36:38.558 -07 000000458 INF: Z Motor: MoveAbsStepped took 39 ms (did NOT wait for settling yet)) 17-03-17 22:36:38.728 -07 000000541 INF: FPGA: Recv FOCMRRFOC 17-03-17 22:36:38.728 -07 000000569 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 209 ms overall 17-03-17 22:36:38.828 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1406045800, 0x0, 418435064) end. Duration was 386 ms. 17-03-17 22:36:38.828 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 387 ms. 17-03-17 22:36:38.828 -07 000000480 INF: Camera: CopyActivePixFullImage start. 17-03-17 22:36:38.828 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 22:36:38.828 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 392 ms. 17-03-17 22:36:38.828 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms. 17-03-17 22:36:38.828 -07 000000486 INF: Camera: CopyActivePixFullImage start. 17-03-17 22:36:38.828 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 22:36:38.838 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 514 ms. 17-03-17 22:36:38.838 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 404 ms. 17-03-17 22:36:38.928 -07 000000382 INF: FPGA: Recv YMVTILE 17-03-17 22:36:38.928 -07 000000593 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 385 ms overall 17-03-17 22:36:38.968 -07 000000593 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 22:36:38.978 -07 000000502 INF: FPGA: Recv YRDPOS 136272 17-03-17 22:36:38.978 -07 000000593 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall 17-03-17 22:36:38.978 -07 000000593 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 22:36:38.978 -07 000000593 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm) 17-03-17 22:36:38.978 -07 000000593 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.838 mm, average velocity = 2.166 mm/sec 17-03-17 22:36:39.928 -07 000000593 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 22:36:39.928 -07 000000438 INF: FPGA: Recv YRDPOS 136272 17-03-17 22:36:39.938 -07 000000593 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 22:36:39.938 -07 000000593 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 22:36:39.958 -07 000000593 INF: Y Motor: After move to 66.552605, error = -0.013542, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm 17-03-17 22:36:39.958 -07 000000593 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm) 17-03-17 22:36:39.958 -07 000000593 INF: Y Motor: Moved to 66.5391 after 1444 ms (table move) 17-03-17 22:36:39.958 -07 000000627 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138009 mm (DAC = 30148) 17-03-17 22:36:39.958 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:39.968 -07 000000486 INF: FPGA: Recv ZSGSRD 30777 17-03-17 22:36:39.968 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall 17-03-17 22:36:39.968 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:39.968 -07 000000462 INF: FPGA: Recv ZSGSRD 30780 17-03-17 22:36:39.978 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall 17-03-17 22:36:39.978 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:39.978 -07 000000551 INF: FPGA: Recv ZSGSRD 30770 17-03-17 22:36:39.988 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:39.988 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:39.988 -07 000000541 INF: FPGA: Recv ZSGSRD 30770 17-03-17 22:36:39.998 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:39.998 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:39.998 -07 000000480 INF: FPGA: Recv ZSGSRD 30777 17-03-17 22:36:40.008 -07 000000627 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:40.008 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:40.008 -07 000000415 INF: FPGA: Recv ZSGSRD 30779 17-03-17 22:36:40.018 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:40.018 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:40.018 -07 000000547 INF: FPGA: Recv ZSGSRD 30777 17-03-17 22:36:40.028 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:40.028 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:40.028 -07 000000541 INF: FPGA: Recv ZSGSRD 30770 17-03-17 22:36:40.038 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:40.038 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:40.038 -07 000000576 INF: FPGA: Recv ZSGSRD 30764 17-03-17 22:36:40.048 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:40.048 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:40.048 -07 000000623 INF: FPGA: Recv ZSGSRD 30774 17-03-17 22:36:40.058 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:40.058 -07 000000627 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 22:36:40.058 -07 000000382 INF: FPGA: Recv ZPIEZORD 26761 17-03-17 22:36:40.068 -07 000000627 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:40.068 -07 000000627 INF: Z Motor: Piezo is near 37.2 V (nominally 0 to 100 V), expect near 46.0 V, since DAC is at 4.600 V. Piezo Error = -8.8 V. 17-03-17 22:36:40.068 -07 000000627 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.0 um, Read 10 ADC samples: Avg = 30774 (-137.2 uncal um), Error = 0.8 uncal um, Median = 30776 (-137.2 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 30764 (-137.2 uncal um), Max = 30780 (-137.3 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 10 (0.1 uncal um) 17-03-17 22:36:40.068 -07 000000627 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30774, posNoise = 6, negNoise = 10 17-03-17 22:36:40.068 -07 000000627 INF: Z Motor: After move to -0.138009, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 22:36:40.068 -07 000000627 INF: Z Motor: Settle wait time = 1448 ms, measure time = 101 ms (allowed 150 ms), total time = 1549 ms 17-03-17 22:36:40.068 -07 000000627 INF: Z Motor: Waiting extra 49 ms after reading position to reach expected total of 150 ms 17-03-17 22:36:40.118 -07 000000627 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1602 ms 17-03-17 22:36:40.118 -07 000000627 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-17 22:36:40.118 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 22:36:40.118 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 22:36:40.118 -07 000000482 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 22:36:40.118 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 22:36:40.118 -07 000000623 INF: Disarm and arm camera sensor 0: ROITrigger start. 17-03-17 22:36:40.118 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 22:36:40.118 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms. 17-03-17 22:36:40.118 -07 000000623 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start. 17-03-17 22:36:40.128 -07 000000623 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms. 17-03-17 22:36:40.128 -07 000000623 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start. 17-03-17 22:36:40.128 -07 000000623 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms. 17-03-17 22:36:40.128 -07 000000623 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms. 17-03-17 22:36:40.138 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera] 17-03-17 22:36:40.178 -07 000000593 INF: FPGA: Recv @CAMSNAP turning led on 40 17-03-17 22:36:40.378 -07 000000547 INF: FPGA: Recv @CAMSNAP img rdy 240 17-03-17 22:36:40.378 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240 17-03-17 22:36:40.378 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start. 17-03-17 22:36:40.378 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1458343128, 0x0, 559484976) start. 17-03-17 22:36:40.418 -07 000000608 INF: FPGA: Recv @CAMSNAP 280 17-03-17 22:36:40.418 -07 000000551 INF: FPGA: Recv CAMSNAP 17-03-17 22:36:40.418 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 285 ms overall 17-03-17 22:36:40.508 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1458343128, 0x0, 559484976) end. Duration was 120 ms. 17-03-17 22:36:40.508 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-17 22:36:40.508 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms. 17-03-17 22:36:40.508 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 123 ms. 17-03-17 22:36:40.518 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 22:36:40.518 -07 000000415 INF: Autofocus start 17-03-17 22:36:40.518 -07 000000415 INF: MeasureProfile start 17-03-17 22:36:40.518 -07 000000458 INF: FPGA: Recv FOCMRRCUR 17-03-17 22:36:40.528 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-17 22:36:40.528 -07 000000480 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror] 17-03-17 22:36:40.528 -07 000000415 INF: MeasureProfile done 17-03-17 22:36:40.528 -07 000000415 INF: X=-32 Z correction [um]=-0.1591732 17-03-17 22:36:40.528 -07 000000415 INF: Autofocus finished 17-03-17 22:36:40.728 -07 000000459 INF: FPGA: Recv FOCMRRIMG 17-03-17 22:36:40.728 -07 000000480 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall 17-03-17 22:36:40.728 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.5390625, Z-position -0.138022056461687. ---------- 17-03-17 22:36:40.728 -07 000000610 INF: Cycle 65 Tile 9 Exposure Settings A 455 G 219 T 219 C 455 17-03-17 22:36:40.738 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28626, sync = True, waitForSettling = True) 17-03-17 22:36:40.738 -07 000000610 INF: Z Motor: Moving to -0.131041 mm, started at -0.138022 mm, distance = 6.98 um 17-03-17 22:36:40.738 -07 000000610 INF: FPGA: Xmit ZDACW 28626\n [Z Motor] 17-03-17 22:36:40.738 -07 000000415 INF: FPGA: Recv ZDACW 17-03-17 22:36:40.748 -07 000000610 INF: FPGA: 'ZDACW 28626' command took 0 ms to send, 0 ms to get response, and 7 ms overall 17-03-17 22:36:40.748 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 22:36:40.748 -07 000000475 INF: FPGA: Recv ZDACR 28626 17-03-17 22:36:40.758 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:40.758 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-17 22:36:40.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:40.908 -07 000000502 INF: FPGA: Recv ZSGSRD 29686 17-03-17 22:36:40.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 22:36:40.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:40.918 -07 000000593 INF: FPGA: Recv ZSGSRD 29690 17-03-17 22:36:40.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:40.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:40.928 -07 000000382 INF: FPGA: Recv ZSGSRD 29686 17-03-17 22:36:40.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:40.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:40.938 -07 000000459 INF: FPGA: Recv ZSGSRD 29687 17-03-17 22:36:40.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:40.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:40.948 -07 000000547 INF: FPGA: Recv ZSGSRD 29689 17-03-17 22:36:40.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:40.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:40.958 -07 000000623 INF: FPGA: Recv ZSGSRD 29689 17-03-17 22:36:40.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:40.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:40.968 -07 000000486 INF: FPGA: Recv ZSGSRD 29686 17-03-17 22:36:40.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:40.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:40.978 -07 000000458 INF: FPGA: Recv ZSGSRD 29685 17-03-17 22:36:40.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:40.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:40.988 -07 000000438 INF: FPGA: Recv ZSGSRD 29687 17-03-17 22:36:40.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:40.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:40.998 -07 000000551 INF: FPGA: Recv ZSGSRD 29690 17-03-17 22:36:41.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:41.008 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 22:36:41.008 -07 000000462 INF: FPGA: Recv ZPIEZORD 25362 17-03-17 22:36:41.018 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:41.018 -07 000000610 INF: Z Motor: Piezo is near 34.2 V (nominally 0 to 100 V), expect near 43.7 V, since DAC is at 4.368 V. Piezo Error = -9.5 V. 17-03-17 22:36:41.018 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.0 um, Read 10 ADC samples: Avg = 29688 (-130.3 uncal um), Error = 0.8 uncal um, Median = 29687 (-130.3 uncal um), StdDev = 2 (0.0 uncal um), Range = 5 (0.0 uncal um), Min = 29685 (-130.2 uncal um), Max = 29690 (-130.3 uncal um), Pos Noise = 2 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um) 17-03-17 22:36:41.018 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29688, posNoise = 2, negNoise = 3 17-03-17 22:36:41.018 -07 000000610 INF: Z Motor: After move to -0.131041, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 22:36:41.018 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms) 17-03-17 22:36:41.018 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 22:36:41.018 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 22:36:41.018 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 22:36:41.018 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 22:36:41.018 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-17 22:36:41.018 -07 000000547 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-17 22:36:41.018 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 22:36:41.018 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-17 22:36:41.018 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 22:36:41.018 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-17 22:36:41.018 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms. 17-03-17 22:36:41.018 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-17 22:36:41.028 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms. 17-03-17 22:36:41.028 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-17 22:36:41.028 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms. 17-03-17 22:36:41.028 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-17 22:36:41.038 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms. 17-03-17 22:36:41.038 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms. 17-03-17 22:36:41.038 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms. 17-03-17 22:36:41.038 -07 000000547 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms. 17-03-17 22:36:41.038 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 455 455 219 219 28802 150\n [Camera] 17-03-17 22:36:41.238 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-17 22:36:41.688 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 647 17-03-17 22:36:41.688 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 647 17-03-17 22:36:41.688 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 22:36:41.698 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 22:36:41.698 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start. 17-03-17 22:36:41.698 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 647 17-03-17 22:36:41.698 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 647 17-03-17 22:36:41.698 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 22:36:41.698 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 22:36:41.698 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start. 17-03-17 22:36:41.888 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28802 840 17-03-17 22:36:41.988 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 22:36:41.988 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 64. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1026, R2=1057, Total=2083. Warn if over 250 bubbles per interval. 17-03-17 22:36:42.038 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP turning grn on 990 17-03-17 22:36:42.068 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 372 ms. 17-03-17 22:36:42.068 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 372 ms. 17-03-17 22:36:42.068 -07 000000458 INF: Camera: CopyActivePixFullImage start. 17-03-17 22:36:42.068 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 22:36:42.068 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 380 ms. 17-03-17 22:36:42.078 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 373 ms. 17-03-17 22:36:42.078 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms. 17-03-17 22:36:42.078 -07 000000541 INF: Camera: CopyActivePixFullImage start. 17-03-17 22:36:42.078 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-17 22:36:42.088 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms. 17-03-17 22:36:42.228 -07 000000593 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 65, FrontChillerTemperature: 3.971733, 17-03-17 22:36:42.248 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1209 17-03-17 22:36:42.258 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1209 17-03-17 22:36:42.258 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 22:36:42.258 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1209 17-03-17 22:36:42.258 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1209 17-03-17 22:36:42.258 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 22:36:42.258 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 22:36:42.258 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start. 17-03-17 22:36:42.258 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 22:36:42.268 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 1406045800, 0x0, 418435064) start. 17-03-17 22:36:42.448 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP 1401 17-03-17 22:36:42.448 -07 000000576 INF: FPGA: Recv CAMDBLSNAP 17-03-17 22:36:42.448 -07 000000610 INF: FPGA: 'CAMDBLSNAP 455 455 219 219 28802 150' command took 2 ms to send, 1401 ms to get response, and 1408 ms overall 17-03-17 22:36:42.448 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503 17-03-17 22:36:42.448 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.5390625, Z-Position -0.131045362075734. ------ 17-03-17 22:36:42.448 -07 000000623 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 22:36:42.448 -07 000000593 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.13776 mm 17-03-17 22:36:42.448 -07 000000593 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-17 22:36:42.458 -07 000000382 INF: FPGA: Recv FOCMRRCUR 17-03-17 22:36:42.458 -07 000000623 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 4 ms overall 17-03-17 22:36:42.458 -07 000000623 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror] 17-03-17 22:36:42.458 -07 000000415 INF: Z Motor: Entering MoveAbsStepped (DAC = 30094, sync = True, waitForSettling = False) 17-03-17 22:36:42.458 -07 000000415 INF: Z Motor: Moving to -0.137762 mm, started at -0.131045 mm, distance = -6.72 um 17-03-17 22:36:42.458 -07 000000475 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True) 17-03-17 22:36:42.458 -07 000000475 INF: Y Motor: Moving to 67.3826 mm, started at 66.5391 mm, delta = 0.8435 mm 17-03-17 22:36:42.468 -07 000000415 INF: FPGA: Xmit ZDACW 30094\n [Z Motor] 17-03-17 22:36:42.468 -07 000000569 INF: FPGA: Recv ZDACW 17-03-17 22:36:42.478 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 22:36:42.478 -07 000000415 INF: FPGA: 'ZDACW 30094' command took 0 ms to send, 0 ms to get response, and 15 ms overall 17-03-17 22:36:42.478 -07 000000547 INF: FPGA: Recv YRDPOS 136273 17-03-17 22:36:42.488 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 25 ms overall 17-03-17 22:36:42.488 -07 000000475 INF: Y Motor: Encoder = 136273 = motor step 106463.3 = 66.5396 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 22:36:42.488 -07 000000415 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 22:36:42.488 -07 000000486 INF: FPGA: Recv ZDACR 30094 17-03-17 22:36:42.488 -07 000000475 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-17 22:36:42.488 -07 000000475 INF: Y Motor: Moving 1349 steps-28 17-03-17 22:36:42.498 -07 000000415 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall 17-03-17 22:36:42.498 -07 000000475 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-17 22:36:42.498 -07 000000415 INF: Z Motor: MoveAbsStepped took 35 ms (did NOT wait for settling yet)) 17-03-17 22:36:42.648 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 391 ms. 17-03-17 22:36:42.648 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms. 17-03-17 22:36:42.658 -07 000000482 INF: Camera: CopyActivePixFullImage start. 17-03-17 22:36:42.658 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 1406045800, 0x0, 418435064) end. Duration was 389 ms. 17-03-17 22:36:42.658 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 390 ms. 17-03-17 22:36:42.658 -07 000000541 INF: Camera: CopyActivePixFullImage start. 17-03-17 22:36:42.658 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-17 22:36:42.658 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms. 17-03-17 22:36:42.658 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-17 22:36:42.658 -07 000000576 INF: FPGA: Recv FOCMRRFOC 17-03-17 22:36:42.658 -07 000000623 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 202 ms overall 17-03-17 22:36:42.668 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms. 17-03-17 22:36:42.868 -07 000000486 INF: FPGA: Recv YMVTILE 17-03-17 22:36:42.868 -07 000000475 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 384 ms overall 17-03-17 22:36:42.908 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 22:36:42.918 -07 000000382 INF: FPGA: Recv YRDPOS 137978 17-03-17 22:36:42.918 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 4 ms to get response, and 6 ms overall 17-03-17 22:36:42.918 -07 000000475 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 22:36:42.918 -07 000000475 INF: Y Motor: Position error before settling (table move) = -22 encoder counts (-0.011 mm) 17-03-17 22:36:42.918 -07 000000475 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 384 ms, distance = 0.844 mm, average velocity = 2.197 mm/sec 17-03-17 22:36:43.868 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 22:36:43.868 -07 000000482 INF: FPGA: Recv YRDPOS 137978 17-03-17 22:36:43.878 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 22:36:43.878 -07 000000475 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 22:36:43.898 -07 000000475 INF: Y Motor: After move to 67.382607, error = -0.010536, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm 17-03-17 22:36:43.898 -07 000000475 INF: Y Motor: Position error after settling (table move) = -22 encoder counts (-0.011 mm), Delta during settling = 0 counts (0.000 mm) 17-03-17 22:36:43.898 -07 000000475 INF: Y Motor: Moved to 67.3721 after 1440 ms (table move) 17-03-17 22:36:43.898 -07 000000593 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137762 mm (DAC = 30094) 17-03-17 22:36:43.898 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:43.908 -07 000000486 INF: FPGA: Recv ZSGSRD 30736 17-03-17 22:36:43.908 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall 17-03-17 22:36:43.908 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:43.908 -07 000000482 INF: FPGA: Recv ZSGSRD 30737 17-03-17 22:36:43.918 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall 17-03-17 22:36:43.918 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:43.918 -07 000000576 INF: FPGA: Recv ZSGSRD 30727 17-03-17 22:36:43.928 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:43.928 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:43.928 -07 000000541 INF: FPGA: Recv ZSGSRD 30737 17-03-17 22:36:43.938 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:43.938 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:43.938 -07 000000475 INF: FPGA: Recv ZSGSRD 30740 17-03-17 22:36:43.948 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:43.948 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:43.948 -07 000000459 INF: FPGA: Recv ZSGSRD 30734 17-03-17 22:36:43.958 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:43.958 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:43.958 -07 000000482 INF: FPGA: Recv ZSGSRD 30737 17-03-17 22:36:43.968 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:43.968 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:43.968 -07 000000547 INF: FPGA: Recv ZSGSRD 30736 17-03-17 22:36:43.978 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:43.978 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:43.978 -07 000000551 INF: FPGA: Recv ZSGSRD 30726 17-03-17 22:36:43.988 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:43.988 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:43.988 -07 000000415 INF: FPGA: Recv ZSGSRD 30733 17-03-17 22:36:43.998 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:43.998 -07 000000593 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 22:36:43.998 -07 000000459 INF: FPGA: Recv ZPIEZORD 26759 17-03-17 22:36:44.008 -07 000000593 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:44.008 -07 000000593 INF: Z Motor: Piezo is near 37.2 V (nominally 0 to 100 V), expect near 45.9 V, since DAC is at 4.592 V. Piezo Error = -8.8 V. 17-03-17 22:36:44.008 -07 000000593 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.8 um, Read 10 ADC samples: Avg = 30734 (-137.0 uncal um), Error = 0.8 uncal um, Median = 30736 (-137.0 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30726 (-136.9 uncal um), Max = 30740 (-137.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um) 17-03-17 22:36:44.008 -07 000000593 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30734, posNoise = 6, negNoise = 8 17-03-17 22:36:44.008 -07 000000593 INF: Z Motor: After move to -0.137762, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 22:36:44.008 -07 000000593 INF: Z Motor: Settle wait time = 1444 ms, measure time = 102 ms (allowed 150 ms), total time = 1546 ms 17-03-17 22:36:44.008 -07 000000593 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms 17-03-17 22:36:44.058 -07 000000593 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1601 ms 17-03-17 22:36:44.058 -07 000000593 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-17 22:36:44.058 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 22:36:44.058 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 22:36:44.058 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 22:36:44.058 -07 000000482 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 22:36:44.058 -07 000000551 INF: Disarm and arm camera sensor 0: ROITrigger start. 17-03-17 22:36:44.058 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 22:36:44.058 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 22:36:44.058 -07 000000551 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start. 17-03-17 22:36:44.068 -07 000000551 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms. 17-03-17 22:36:44.068 -07 000000551 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start. 17-03-17 22:36:44.078 -07 000000551 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms. 17-03-17 22:36:44.078 -07 000000551 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms. 17-03-17 22:36:44.078 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera] 17-03-17 22:36:44.118 -07 000000486 INF: FPGA: Recv @CAMSNAP turning led on 40 17-03-17 22:36:44.318 -07 000000608 INF: FPGA: Recv @CAMSNAP img rdy 240 17-03-17 22:36:44.318 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240 17-03-17 22:36:44.328 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start. 17-03-17 22:36:44.328 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1458343128, 0x0, 559484976) start. 17-03-17 22:36:44.358 -07 000000551 INF: FPGA: Recv @CAMSNAP 280 17-03-17 22:36:44.358 -07 000000480 INF: FPGA: Recv CAMSNAP 17-03-17 22:36:44.358 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 284 ms overall 17-03-17 22:36:44.448 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1458343128, 0x0, 559484976) end. Duration was 127 ms. 17-03-17 22:36:44.448 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-17 22:36:44.448 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms. 17-03-17 22:36:44.458 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms. 17-03-17 22:36:44.558 -07 000000462 INF: Autofocus start 17-03-17 22:36:44.558 -07 000000462 INF: MeasureProfile start 17-03-17 22:36:44.558 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 22:36:44.558 -07 000000459 INF: FPGA: Recv FOCMRRCUR 17-03-17 22:36:44.568 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall 17-03-17 22:36:44.568 -07 000000608 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror] 17-03-17 22:36:44.568 -07 000000462 INF: MeasureProfile done 17-03-17 22:36:44.568 -07 000000462 INF: X=16 Z correction [um]=0.0530179 17-03-17 22:36:44.568 -07 000000462 INF: Autofocus finished 17-03-17 22:36:44.768 -07 000000502 INF: FPGA: Recv FOCMRRIMG 17-03-17 22:36:44.768 -07 000000608 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall 17-03-17 22:36:44.768 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.3720703125, Z-position -0.137765087976016. ---------- 17-03-17 22:36:44.768 -07 000000610 INF: Cycle 65 Tile 10 Exposure Settings A 455 G 219 T 219 C 455 17-03-17 22:36:44.778 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28618, sync = True, waitForSettling = True) 17-03-17 22:36:44.778 -07 000000610 INF: Z Motor: Moving to -0.131005 mm, started at -0.137765 mm, distance = 6.76 um 17-03-17 22:36:44.778 -07 000000610 INF: FPGA: Xmit ZDACW 28618\n [Z Motor] 17-03-17 22:36:44.778 -07 000000382 INF: FPGA: Recv ZDACW 17-03-17 22:36:44.788 -07 000000610 INF: FPGA: 'ZDACW 28618' command took 0 ms to send, 0 ms to get response, and 8 ms overall 17-03-17 22:36:44.788 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 22:36:44.788 -07 000000569 INF: FPGA: Recv ZDACR 28618 17-03-17 22:36:44.798 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:44.798 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-17 22:36:44.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:44.948 -07 000000502 INF: FPGA: Recv ZSGSRD 29685 17-03-17 22:36:44.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 22:36:44.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:44.958 -07 000000547 INF: FPGA: Recv ZSGSRD 29680 17-03-17 22:36:44.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:44.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:44.968 -07 000000486 INF: FPGA: Recv ZSGSRD 29683 17-03-17 22:36:44.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:44.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:44.978 -07 000000458 INF: FPGA: Recv ZSGSRD 29679 17-03-17 22:36:44.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:44.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:44.988 -07 000000576 INF: FPGA: Recv ZSGSRD 29682 17-03-17 22:36:44.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:44.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:44.998 -07 000000551 INF: FPGA: Recv ZSGSRD 29684 17-03-17 22:36:45.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:45.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:45.008 -07 000000462 INF: FPGA: Recv ZSGSRD 29677 17-03-17 22:36:45.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:45.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:45.018 -07 000000480 INF: FPGA: Recv ZSGSRD 29684 17-03-17 22:36:45.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:45.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:45.028 -07 000000458 INF: FPGA: Recv ZSGSRD 29688 17-03-17 22:36:45.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:45.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:45.038 -07 000000576 INF: FPGA: Recv ZSGSRD 29683 17-03-17 22:36:45.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:45.048 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 22:36:45.048 -07 000000482 INF: FPGA: Recv ZPIEZORD 25375 17-03-17 22:36:45.058 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:45.058 -07 000000610 INF: Z Motor: Piezo is near 34.2 V (nominally 0 to 100 V), expect near 43.7 V, since DAC is at 4.367 V. Piezo Error = -9.5 V. 17-03-17 22:36:45.058 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.0 um, Read 10 ADC samples: Avg = 29682 (-130.2 uncal um), Error = 0.8 uncal um, Median = 29683 (-130.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29677 (-130.2 uncal um), Max = 29688 (-130.3 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um) 17-03-17 22:36:45.058 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29682, posNoise = 6, negNoise = 5 17-03-17 22:36:45.058 -07 000000610 INF: Z Motor: After move to -0.131005, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 22:36:45.058 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms) 17-03-17 22:36:45.058 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 22:36:45.058 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 22:36:45.058 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 22:36:45.058 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 22:36:45.058 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-17 22:36:45.058 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-17 22:36:45.058 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-17 22:36:45.058 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 22:36:45.058 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms. 17-03-17 22:36:45.058 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-17 22:36:45.058 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 22:36:45.058 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-17 22:36:45.068 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms. 17-03-17 22:36:45.068 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-17 22:36:45.068 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms. 17-03-17 22:36:45.068 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-17 22:36:45.078 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms. 17-03-17 22:36:45.078 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms. 17-03-17 22:36:45.078 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms. 17-03-17 22:36:45.078 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms. 17-03-17 22:36:45.078 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 455 455 219 219 28795 150\n [Camera] 17-03-17 22:36:45.278 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-17 22:36:45.728 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 647 17-03-17 22:36:45.728 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 647 17-03-17 22:36:45.738 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 22:36:45.738 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 647 17-03-17 22:36:45.738 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 647 17-03-17 22:36:45.738 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 22:36:45.738 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 22:36:45.738 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start. 17-03-17 22:36:45.738 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 22:36:45.738 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start. 17-03-17 22:36:45.928 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28795 840 17-03-17 22:36:46.078 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP turning grn on 990 17-03-17 22:36:46.118 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 375 ms. 17-03-17 22:36:46.118 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 375 ms. 17-03-17 22:36:46.118 -07 000000608 INF: Camera: CopyActivePixFullImage start. 17-03-17 22:36:46.118 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 373 ms. 17-03-17 22:36:46.118 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms. 17-03-17 22:36:46.118 -07 000000502 INF: Camera: CopyActivePixFullImage start. 17-03-17 22:36:46.118 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-17 22:36:46.118 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms. 17-03-17 22:36:46.118 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-17 22:36:46.128 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms. 17-03-17 22:36:46.298 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1209 17-03-17 22:36:46.298 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1209 17-03-17 22:36:46.298 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 22:36:46.408 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1209 17-03-17 22:36:46.408 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1209 17-03-17 22:36:46.408 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 22:36:46.408 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 22:36:46.408 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 22:36:46.408 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1406045800, 0x0, 418435064) start. 17-03-17 22:36:46.408 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start. 17-03-17 22:36:46.488 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP 1402 17-03-17 22:36:46.488 -07 000000547 INF: FPGA: Recv CAMDBLSNAP 17-03-17 22:36:46.488 -07 000000610 INF: FPGA: 'CAMDBLSNAP 455 455 219 219 28795 150' command took 2 ms to send, 1402 ms to get response, and 1408 ms overall 17-03-17 22:36:46.488 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503 17-03-17 22:36:46.488 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.3720703125, Z-Position -0.131006816802884. ------ 17-03-17 22:36:46.488 -07 000000459 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 22:36:46.488 -07 000000458 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.13749 mm 17-03-17 22:36:46.488 -07 000000458 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-17 22:36:46.488 -07 000000608 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True) 17-03-17 22:36:46.488 -07 000000608 INF: Y Motor: Moving to 68.2126 mm, started at 67.3721 mm, delta = 0.8405 mm 17-03-17 22:36:46.498 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 22:36:46.498 -07 000000502 INF: Z Motor: Entering MoveAbsStepped (DAC = 30034, sync = True, waitForSettling = False) 17-03-17 22:36:46.498 -07 000000502 INF: Z Motor: Moving to -0.137487 mm, started at -0.131007 mm, distance = -6.48 um 17-03-17 22:36:46.498 -07 000000541 INF: FPGA: Recv FOCMRRCUR 17-03-17 22:36:46.498 -07 000000459 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 3 ms to get response, and 6 ms overall 17-03-17 22:36:46.498 -07 000000480 INF: FPGA: Recv YRDPOS 137979 17-03-17 22:36:46.508 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 22:36:46.508 -07 000000608 INF: Y Motor: Encoder = 137979 = motor step 107796.1 = 67.3726 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 22:36:46.508 -07 000000459 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror] 17-03-17 22:36:46.508 -07 000000608 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-17 22:36:46.508 -07 000000608 INF: Y Motor: Moving 1344 steps-22 17-03-17 22:36:46.518 -07 000000502 INF: FPGA: Xmit ZDACW 30034\n [Z Motor] 17-03-17 22:36:46.518 -07 000000551 INF: FPGA: Recv ZDACW 17-03-17 22:36:46.528 -07 000000608 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-17 22:36:46.528 -07 000000502 INF: FPGA: 'ZDACW 30034' command took 0 ms to send, 0 ms to get response, and 29 ms overall 17-03-17 22:36:46.538 -07 000000502 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 22:36:46.538 -07 000000382 INF: FPGA: Recv ZDACR 30034 17-03-17 22:36:46.548 -07 000000502 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall 17-03-17 22:36:46.548 -07 000000502 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet)) 17-03-17 22:36:46.708 -07 000000547 INF: FPGA: Recv FOCMRRFOC 17-03-17 22:36:46.708 -07 000000459 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 209 ms overall 17-03-17 22:36:46.788 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1406045800, 0x0, 418435064) end. Duration was 379 ms. 17-03-17 22:36:46.788 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms. 17-03-17 22:36:46.788 -07 000000462 INF: Camera: CopyActivePixFullImage start. 17-03-17 22:36:46.798 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 22:36:46.798 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 385 ms. 17-03-17 22:36:46.798 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms. 17-03-17 22:36:46.798 -07 000000482 INF: Camera: CopyActivePixFullImage start. 17-03-17 22:36:46.798 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 22:36:46.798 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 505 ms. 17-03-17 22:36:46.798 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms. 17-03-17 22:36:46.898 -07 000000486 INF: FPGA: Recv YMVTILE 17-03-17 22:36:46.898 -07 000000608 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 392 ms overall 17-03-17 22:36:46.938 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 22:36:46.948 -07 000000576 INF: FPGA: Recv YRDPOS 139684 17-03-17 22:36:46.948 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall 17-03-17 22:36:46.948 -07 000000608 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 22:36:46.948 -07 000000608 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm) 17-03-17 22:36:46.948 -07 000000608 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 393 ms, distance = 0.841 mm, average velocity = 2.139 mm/sec 17-03-17 22:36:46.988 -07 000000482 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 22:36:46.988 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 64. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1026, R2=1057, Total=2083. Warn if over 250 bubbles per interval. 17-03-17 22:36:47.598 -07 000000541 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 65, FrontChillerTemperature: 3.983999, 17-03-17 22:36:47.898 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 22:36:47.898 -07 000000415 INF: FPGA: Recv YRDPOS 139685 17-03-17 22:36:47.908 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:47.908 -07 000000608 INF: Y Motor: Encoder = 139685 = motor step 109128.9 = 68.2056 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 22:36:47.928 -07 000000608 INF: Y Motor: After move to 68.212608, error = -0.007042, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm 17-03-17 22:36:47.928 -07 000000608 INF: Y Motor: Position error after settling (table move) = -14 encoder counts (-0.007 mm), Delta during settling = 1 counts (0.000 mm) 17-03-17 22:36:47.928 -07 000000608 INF: Y Motor: Moved to 68.2056 after 1435 ms (table move) 17-03-17 22:36:47.928 -07 000000458 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137487 mm (DAC = 30034) 17-03-17 22:36:47.948 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:47.948 -07 000000502 INF: FPGA: Recv ZSGSRD 30695 17-03-17 22:36:47.958 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 21 ms overall 17-03-17 22:36:47.968 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:47.968 -07 000000576 INF: FPGA: Recv ZSGSRD 30695 17-03-17 22:36:47.978 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall 17-03-17 22:36:47.978 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:47.978 -07 000000627 INF: FPGA: Recv ZSGSRD 30689 17-03-17 22:36:47.988 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:47.988 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:47.988 -07 000000547 INF: FPGA: Recv ZSGSRD 30687 17-03-17 22:36:47.998 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:47.998 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:47.998 -07 000000382 INF: FPGA: Recv ZSGSRD 30688 17-03-17 22:36:48.008 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:48.008 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:48.008 -07 000000438 INF: FPGA: Recv ZSGSRD 30690 17-03-17 22:36:48.018 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:48.018 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:48.018 -07 000000576 INF: FPGA: Recv ZSGSRD 30690 17-03-17 22:36:48.028 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:48.028 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:48.028 -07 000000593 INF: FPGA: Recv ZSGSRD 30694 17-03-17 22:36:48.038 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:48.038 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:48.038 -07 000000608 INF: FPGA: Recv ZSGSRD 30695 17-03-17 22:36:48.048 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:48.048 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:48.048 -07 000000459 INF: FPGA: Recv ZSGSRD 30698 17-03-17 22:36:48.058 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:48.058 -07 000000458 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 22:36:48.058 -07 000000486 INF: FPGA: Recv ZPIEZORD 26667 17-03-17 22:36:48.068 -07 000000458 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:48.068 -07 000000458 INF: Z Motor: Piezo is near 37.0 V (nominally 0 to 100 V), expect near 45.8 V, since DAC is at 4.583 V. Piezo Error = -8.9 V. 17-03-17 22:36:48.068 -07 000000458 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.5 um, Read 10 ADC samples: Avg = 30692 (-136.7 uncal um), Error = 0.8 uncal um, Median = 30692 (-136.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30687 (-136.7 uncal um), Max = 30698 (-136.7 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um) 17-03-17 22:36:48.068 -07 000000458 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30692, posNoise = 6, negNoise = 5 17-03-17 22:36:48.068 -07 000000458 INF: Z Motor: After move to -0.137487, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 22:36:48.068 -07 000000458 INF: Z Motor: Settle wait time = 1438 ms, measure time = 132 ms (allowed 150 ms), total time = 1570 ms 17-03-17 22:36:48.068 -07 000000458 INF: Z Motor: Waiting extra 18 ms after reading position to reach expected total of 150 ms 17-03-17 22:36:48.088 -07 000000458 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1593 ms 17-03-17 22:36:48.088 -07 000000458 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-17 22:36:48.088 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 22:36:48.088 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 22:36:48.088 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 22:36:48.088 -07 000000415 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 22:36:48.088 -07 000000459 INF: Disarm and arm camera sensor 0: ROITrigger start. 17-03-17 22:36:48.088 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 22:36:48.088 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 22:36:48.088 -07 000000459 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start. 17-03-17 22:36:48.098 -07 000000459 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms. 17-03-17 22:36:48.098 -07 000000459 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start. 17-03-17 22:36:48.108 -07 000000459 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms. 17-03-17 22:36:48.108 -07 000000459 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms. 17-03-17 22:36:48.108 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera] 17-03-17 22:36:48.158 -07 000000502 INF: FPGA: Recv @CAMSNAP turning led on 40 17-03-17 22:36:48.348 -07 000000551 INF: FPGA: Recv @CAMSNAP img rdy 240 17-03-17 22:36:48.358 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240 17-03-17 22:36:48.358 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start. 17-03-17 22:36:48.358 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1458343128, 0x0, 559484976) start. 17-03-17 22:36:48.388 -07 000000627 INF: FPGA: Recv @CAMSNAP 280 17-03-17 22:36:48.398 -07 000000593 INF: FPGA: Recv CAMSNAP 17-03-17 22:36:48.398 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 285 ms overall 17-03-17 22:36:48.478 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1458343128, 0x0, 559484976) end. Duration was 126 ms. 17-03-17 22:36:48.478 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-17 22:36:48.488 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms. 17-03-17 22:36:48.488 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms. 17-03-17 22:36:48.498 -07 000000482 INF: Autofocus start 17-03-17 22:36:48.498 -07 000000482 INF: MeasureProfile start 17-03-17 22:36:48.498 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 22:36:48.498 -07 000000593 INF: FPGA: Recv FOCMRRCUR 17-03-17 22:36:48.508 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall 17-03-17 22:36:48.508 -07 000000480 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror] 17-03-17 22:36:48.508 -07 000000482 INF: MeasureProfile done 17-03-17 22:36:48.508 -07 000000482 INF: X=16 Z correction [um]=0.0530179 17-03-17 22:36:48.508 -07 000000482 INF: Autofocus finished 17-03-17 22:36:48.708 -07 000000382 INF: FPGA: Recv FOCMRRIMG 17-03-17 22:36:48.708 -07 000000480 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall 17-03-17 22:36:48.708 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.20556640625, Z-position -0.137495271066062. ---------- 17-03-17 22:36:48.708 -07 000000610 INF: Cycle 65 Tile 11 Exposure Settings A 455 G 219 T 219 C 455 17-03-17 22:36:48.718 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28558, sync = True, waitForSettling = True) 17-03-17 22:36:48.718 -07 000000610 INF: Z Motor: Moving to -0.130730 mm, started at -0.137495 mm, distance = 6.77 um 17-03-17 22:36:48.718 -07 000000610 INF: FPGA: Xmit ZDACW 28558\n [Z Motor] 17-03-17 22:36:48.718 -07 000000462 INF: FPGA: Recv ZDACW 17-03-17 22:36:48.728 -07 000000610 INF: FPGA: 'ZDACW 28558' command took 0 ms to send, 0 ms to get response, and 8 ms overall 17-03-17 22:36:48.728 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 22:36:48.728 -07 000000459 INF: FPGA: Recv ZDACR 28558 17-03-17 22:36:48.738 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:48.738 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-17 22:36:48.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:48.888 -07 000000502 INF: FPGA: Recv ZSGSRD 29636 17-03-17 22:36:48.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:48.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:48.898 -07 000000547 INF: FPGA: Recv ZSGSRD 29648 17-03-17 22:36:48.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:48.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:48.908 -07 000000551 INF: FPGA: Recv ZSGSRD 29640 17-03-17 22:36:48.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:48.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:48.918 -07 000000608 INF: FPGA: Recv ZSGSRD 29636 17-03-17 22:36:48.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:48.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:48.928 -07 000000459 INF: FPGA: Recv ZSGSRD 29639 17-03-17 22:36:48.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:48.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:48.938 -07 000000486 INF: FPGA: Recv ZSGSRD 29642 17-03-17 22:36:48.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:48.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:48.948 -07 000000482 INF: FPGA: Recv ZSGSRD 29645 17-03-17 22:36:48.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:48.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:48.958 -07 000000627 INF: FPGA: Recv ZSGSRD 29636 17-03-17 22:36:48.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:48.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:48.968 -07 000000462 INF: FPGA: Recv ZSGSRD 29637 17-03-17 22:36:48.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:48.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:48.978 -07 000000569 INF: FPGA: Recv ZSGSRD 29646 17-03-17 22:36:48.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:48.988 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 22:36:48.988 -07 000000438 INF: FPGA: Recv ZPIEZORD 25311 17-03-17 22:36:48.998 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:48.998 -07 000000610 INF: Z Motor: Piezo is near 34.1 V (nominally 0 to 100 V), expect near 43.6 V, since DAC is at 4.358 V. Piezo Error = -9.5 V. 17-03-17 22:36:48.998 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.7 um, Read 10 ADC samples: Avg = 29640 (-130.0 uncal um), Error = 0.8 uncal um, Median = 29640 (-130.0 uncal um), StdDev = 5 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29636 (-129.9 uncal um), Max = 29648 (-130.0 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 4 (0.0 uncal um) 17-03-17 22:36:48.998 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29640, posNoise = 8, negNoise = 4 17-03-17 22:36:48.998 -07 000000610 INF: Z Motor: After move to -0.130730, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 22:36:48.998 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms) 17-03-17 22:36:48.998 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 22:36:48.998 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 22:36:48.998 -07 000000551 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 22:36:48.998 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 22:36:48.998 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-17 22:36:48.998 -07 000000459 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-17 22:36:48.998 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 22:36:48.998 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-17 22:36:48.998 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 22:36:48.998 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-17 22:36:48.998 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms. 17-03-17 22:36:48.998 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-17 22:36:49.008 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms. 17-03-17 22:36:49.008 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-17 22:36:49.008 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms. 17-03-17 22:36:49.008 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-17 22:36:49.018 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms. 17-03-17 22:36:49.018 -07 000000459 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms. 17-03-17 22:36:49.018 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms. 17-03-17 22:36:49.018 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms. 17-03-17 22:36:49.018 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 455 455 219 219 28735 150\n [Camera] 17-03-17 22:36:49.218 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP turning red on 195 17-03-17 22:36:49.668 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 647 17-03-17 22:36:49.678 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 647 17-03-17 22:36:49.678 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 22:36:49.678 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 647 17-03-17 22:36:49.678 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 647 17-03-17 22:36:49.678 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 22:36:49.678 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 22:36:49.678 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start. 17-03-17 22:36:49.678 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 22:36:49.678 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start. 17-03-17 22:36:49.868 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28735 840 17-03-17 22:36:50.018 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP turning grn on 990 17-03-17 22:36:50.058 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 374 ms. 17-03-17 22:36:50.058 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms. 17-03-17 22:36:50.058 -07 000000576 INF: Camera: CopyActivePixFullImage start. 17-03-17 22:36:50.058 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 378 ms. 17-03-17 22:36:50.058 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms. 17-03-17 22:36:50.058 -07 000000623 INF: Camera: CopyActivePixFullImage start. 17-03-17 22:36:50.058 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-17 22:36:50.058 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-17 22:36:50.058 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms. 17-03-17 22:36:50.068 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms. 17-03-17 22:36:50.238 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1209 17-03-17 22:36:50.238 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1209 17-03-17 22:36:50.238 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1209 17-03-17 22:36:50.238 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1209 17-03-17 22:36:50.238 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 22:36:50.238 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 22:36:50.258 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 22:36:50.258 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 1406045800, 0x0, 418435064) start. 17-03-17 22:36:50.258 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 22:36:50.258 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start. 17-03-17 22:36:50.428 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP 1402 17-03-17 22:36:50.428 -07 000000415 INF: FPGA: Recv CAMDBLSNAP 17-03-17 22:36:50.428 -07 000000610 INF: FPGA: 'CAMDBLSNAP 455 455 219 219 28735 150' command took 2 ms to send, 1403 ms to get response, and 1408 ms overall 17-03-17 22:36:50.428 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503 17-03-17 22:36:50.428 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.20556640625, Z-Position -0.13073699989293. ------ 17-03-17 22:36:50.438 -07 000000547 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 22:36:50.438 -07 000000569 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.13743 mm 17-03-17 22:36:50.438 -07 000000569 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-17 22:36:50.438 -07 000000415 INF: FPGA: Recv FOCMRRCUR 17-03-17 22:36:50.438 -07 000000480 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True) 17-03-17 22:36:50.438 -07 000000480 INF: Y Motor: Moving to 69.0426 mm, started at 68.2056 mm, delta = 0.8370 mm 17-03-17 22:36:50.438 -07 000000458 INF: Z Motor: Entering MoveAbsStepped (DAC = 30022, sync = True, waitForSettling = False) 17-03-17 22:36:50.438 -07 000000458 INF: Z Motor: Moving to -0.137432 mm, started at -0.130737 mm, distance = -6.69 um 17-03-17 22:36:50.448 -07 000000547 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:50.448 -07 000000458 INF: FPGA: Xmit ZDACW 30022\n [Z Motor] 17-03-17 22:36:50.448 -07 000000462 INF: FPGA: Recv ZDACW 17-03-17 22:36:50.458 -07 000000458 INF: FPGA: 'ZDACW 30022' command took 0 ms to send, 0 ms to get response, and 13 ms overall 17-03-17 22:36:50.458 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 22:36:50.458 -07 000000623 INF: FPGA: Recv YRDPOS 139685 17-03-17 22:36:50.468 -07 000000547 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror] 17-03-17 22:36:50.468 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 23 ms overall 17-03-17 22:36:50.468 -07 000000480 INF: Y Motor: Encoder = 139685 = motor step 109128.9 = 68.2056 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 22:36:50.468 -07 000000480 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-17 22:36:50.468 -07 000000480 INF: Y Motor: Moving 1339 steps-15 17-03-17 22:36:50.478 -07 000000458 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 22:36:50.478 -07 000000593 INF: FPGA: Recv ZDACR 30022 17-03-17 22:36:50.488 -07 000000480 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-17 22:36:50.488 -07 000000458 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall 17-03-17 22:36:50.488 -07 000000458 INF: Z Motor: MoveAbsStepped took 43 ms (did NOT wait for settling yet)) 17-03-17 22:36:50.638 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 381 ms. 17-03-17 22:36:50.638 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 1406045800, 0x0, 418435064) end. Duration was 382 ms. 17-03-17 22:36:50.638 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms. 17-03-17 22:36:50.638 -07 000000541 INF: Camera: CopyActivePixFullImage start. 17-03-17 22:36:50.638 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms. 17-03-17 22:36:50.638 -07 000000459 INF: Camera: CopyActivePixFullImage start. 17-03-17 22:36:50.638 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-17 22:36:50.638 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms. 17-03-17 22:36:50.638 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms. 17-03-17 22:36:50.648 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms. 17-03-17 22:36:50.668 -07 000000576 INF: FPGA: Recv FOCMRRFOC 17-03-17 22:36:50.668 -07 000000547 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall 17-03-17 22:36:50.858 -07 000000502 INF: FPGA: Recv YMVTILE 17-03-17 22:36:50.858 -07 000000480 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall 17-03-17 22:36:50.898 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 22:36:50.908 -07 000000627 INF: FPGA: Recv YRDPOS 141368 17-03-17 22:36:50.908 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall 17-03-17 22:36:50.908 -07 000000480 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 22:36:50.908 -07 000000480 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm) 17-03-17 22:36:50.908 -07 000000480 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.837 mm, average velocity = 2.108 mm/sec 17-03-17 22:36:51.858 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 22:36:51.858 -07 000000482 INF: FPGA: Recv YRDPOS 141368 17-03-17 22:36:51.868 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:51.868 -07 000000480 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 22:36:51.888 -07 000000480 INF: Y Motor: After move to 69.042610, error = -0.015266, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm 17-03-17 22:36:51.888 -07 000000480 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm) 17-03-17 22:36:51.888 -07 000000480 INF: Y Motor: Moved to 69.0273 after 1448 ms (table move) 17-03-17 22:36:51.888 -07 000000569 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137432 mm (DAC = 30022) 17-03-17 22:36:51.888 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:51.898 -07 000000551 INF: FPGA: Recv ZSGSRD 30692 17-03-17 22:36:51.898 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 5 ms to get response, and 6 ms overall 17-03-17 22:36:51.898 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:51.898 -07 000000576 INF: FPGA: Recv ZSGSRD 30679 17-03-17 22:36:51.908 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall 17-03-17 22:36:51.908 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:51.908 -07 000000459 INF: FPGA: Recv ZSGSRD 30677 17-03-17 22:36:51.918 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:51.918 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:51.918 -07 000000502 INF: FPGA: Recv ZSGSRD 30683 17-03-17 22:36:51.928 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:51.928 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:51.928 -07 000000486 INF: FPGA: Recv ZSGSRD 30689 17-03-17 22:36:51.938 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:51.938 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:51.938 -07 000000551 INF: FPGA: Recv ZSGSRD 30684 17-03-17 22:36:51.948 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:51.948 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:51.948 -07 000000576 INF: FPGA: Recv ZSGSRD 30679 17-03-17 22:36:51.958 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:51.958 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:51.958 -07 000000459 INF: FPGA: Recv ZSGSRD 30679 17-03-17 22:36:51.968 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:51.968 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:51.968 -07 000000415 INF: FPGA: Recv ZSGSRD 30684 17-03-17 22:36:51.978 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:51.978 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:51.978 -07 000000593 INF: FPGA: Recv ZSGSRD 30679 17-03-17 22:36:51.988 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:51.988 -07 000000569 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 22:36:51.988 -07 000000480 INF: FPGA: Recv ZPIEZORD 26692 17-03-17 22:36:51.988 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 22:36:51.988 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 64. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1026, R2=1057, Total=2083. Warn if over 250 bubbles per interval. 17-03-17 22:36:51.998 -07 000000569 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:51.998 -07 000000569 INF: Z Motor: Piezo is near 37.0 V (nominally 0 to 100 V), expect near 45.8 V, since DAC is at 4.581 V. Piezo Error = -8.8 V. 17-03-17 22:36:51.998 -07 000000569 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.4 um, Read 10 ADC samples: Avg = 30682 (-136.6 uncal um), Error = 0.8 uncal um, Median = 30681 (-136.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30677 (-136.6 uncal um), Max = 30692 (-136.7 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um) 17-03-17 22:36:51.998 -07 000000569 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30682, posNoise = 10, negNoise = 5 17-03-17 22:36:51.998 -07 000000569 INF: Z Motor: After move to -0.137432, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 22:36:51.998 -07 000000569 INF: Z Motor: Settle wait time = 1451 ms, measure time = 102 ms (allowed 150 ms), total time = 1553 ms 17-03-17 22:36:51.998 -07 000000569 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms 17-03-17 22:36:52.048 -07 000000569 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1609 ms 17-03-17 22:36:52.048 -07 000000569 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-17 22:36:52.048 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 22:36:52.048 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 22:36:52.048 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 22:36:52.048 -07 000000623 INF: Disarm and arm camera sensor 0: ROITrigger start. 17-03-17 22:36:52.048 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 22:36:52.048 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms. 17-03-17 22:36:52.048 -07 000000623 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start. 17-03-17 22:36:52.048 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 22:36:52.058 -07 000000623 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms. 17-03-17 22:36:52.058 -07 000000623 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start. 17-03-17 22:36:52.068 -07 000000623 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms. 17-03-17 22:36:52.068 -07 000000623 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms. 17-03-17 22:36:52.068 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera] 17-03-17 22:36:52.108 -07 000000576 INF: FPGA: Recv @CAMSNAP turning led on 40 17-03-17 22:36:52.308 -07 000000475 INF: FPGA: Recv @CAMSNAP img rdy 240 17-03-17 22:36:52.308 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240 17-03-17 22:36:52.308 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start. 17-03-17 22:36:52.318 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1458343128, 0x0, 559484976) start. 17-03-17 22:36:52.348 -07 000000480 INF: FPGA: Recv @CAMSNAP 280 17-03-17 22:36:52.348 -07 000000415 INF: FPGA: Recv CAMSNAP 17-03-17 22:36:52.348 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 285 ms overall 17-03-17 22:36:52.438 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1458343128, 0x0, 559484976) end. Duration was 123 ms. 17-03-17 22:36:52.438 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-17 22:36:52.438 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms. 17-03-17 22:36:52.438 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 126 ms. 17-03-17 22:36:52.548 -07 000000475 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 22:36:52.548 -07 000000551 INF: Autofocus start 17-03-17 22:36:52.548 -07 000000551 INF: MeasureProfile start 17-03-17 22:36:52.548 -07 000000459 INF: FPGA: Recv FOCMRRCUR 17-03-17 22:36:52.558 -07 000000475 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall 17-03-17 22:36:52.558 -07 000000475 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror] 17-03-17 22:36:52.558 -07 000000551 INF: MeasureProfile done 17-03-17 22:36:52.558 -07 000000551 INF: X=-16 Z correction [um]=-0.08128808 17-03-17 22:36:52.558 -07 000000551 INF: Autofocus finished 17-03-17 22:36:52.758 -07 000000480 INF: FPGA: Recv FOCMRRIMG 17-03-17 22:36:52.758 -07 000000475 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall 17-03-17 22:36:52.758 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02734375, Z-position -0.137431028944645. ---------- 17-03-17 22:36:52.758 -07 000000610 INF: Cycle 65 Tile 12 Exposure Settings A 455 G 219 T 219 C 455 17-03-17 22:36:52.768 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28517, sync = True, waitForSettling = True) 17-03-17 22:36:52.768 -07 000000610 INF: Z Motor: Moving to -0.130542 mm, started at -0.137431 mm, distance = 6.89 um 17-03-17 22:36:52.768 -07 000000610 INF: FPGA: Xmit ZDACW 28517\n [Z Motor] 17-03-17 22:36:52.768 -07 000000627 INF: FPGA: Recv ZDACW 17-03-17 22:36:52.778 -07 000000610 INF: FPGA: 'ZDACW 28517' command took 0 ms to send, 0 ms to get response, and 8 ms overall 17-03-17 22:36:52.778 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 22:36:52.778 -07 000000438 INF: FPGA: Recv ZDACR 28517 17-03-17 22:36:52.788 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:52.788 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-17 22:36:52.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:52.938 -07 000000480 INF: FPGA: Recv ZSGSRD 29611 17-03-17 22:36:52.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 22:36:52.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:52.948 -07 000000462 INF: FPGA: Recv ZSGSRD 29619 17-03-17 22:36:52.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:52.968 -07 000000551 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 65, FrontChillerTemperature: 3.98264, 17-03-17 22:36:52.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:52.978 -07 000000458 INF: FPGA: Recv ZSGSRD 29610 17-03-17 22:36:52.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall 17-03-17 22:36:53.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:53.008 -07 000000475 INF: FPGA: Recv ZSGSRD 29609 17-03-17 22:36:53.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall 17-03-17 22:36:53.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:53.018 -07 000000382 INF: FPGA: Recv ZSGSRD 29612 17-03-17 22:36:53.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:53.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:53.048 -07 000000627 INF: FPGA: Recv ZSGSRD 29611 17-03-17 22:36:53.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall 17-03-17 22:36:53.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:53.058 -07 000000382 INF: FPGA: Recv ZSGSRD 29610 17-03-17 22:36:53.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:53.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:53.068 -07 000000608 INF: FPGA: Recv ZSGSRD 29612 17-03-17 22:36:53.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:53.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:53.078 -07 000000459 INF: FPGA: Recv ZSGSRD 29613 17-03-17 22:36:53.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:53.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:53.088 -07 000000623 INF: FPGA: Recv ZSGSRD 29608 17-03-17 22:36:53.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:53.098 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 22:36:53.098 -07 000000482 INF: FPGA: Recv ZPIEZORD 25281 17-03-17 22:36:53.108 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:53.108 -07 000000610 INF: Z Motor: Piezo is near 34.0 V (nominally 0 to 100 V), expect near 43.5 V, since DAC is at 4.351 V. Piezo Error = -9.5 V. 17-03-17 22:36:53.108 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.5 um, Read 10 ADC samples: Avg = 29612 (-129.8 uncal um), Error = 0.8 uncal um, Median = 29611 (-129.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29608 (-129.8 uncal um), Max = 29619 (-129.8 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um) 17-03-17 22:36:53.108 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29612, posNoise = 7, negNoise = 4 17-03-17 22:36:53.108 -07 000000610 INF: Z Motor: After move to -0.130542, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 22:36:53.108 -07 000000610 INF: Z Motor: MoveAbsStepped took 339 ms) 17-03-17 22:36:53.108 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 22:36:53.108 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 22:36:53.108 -07 000000623 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 22:36:53.108 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 22:36:53.108 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-17 22:36:53.108 -07 000000415 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-17 22:36:53.108 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-17 22:36:53.108 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 22:36:53.108 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms. 17-03-17 22:36:53.108 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-17 22:36:53.108 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 22:36:53.108 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-17 22:36:53.118 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms. 17-03-17 22:36:53.118 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-17 22:36:53.118 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms. 17-03-17 22:36:53.118 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-17 22:36:53.128 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms. 17-03-17 22:36:53.128 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms. 17-03-17 22:36:53.128 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms. 17-03-17 22:36:53.128 -07 000000415 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms. 17-03-17 22:36:53.128 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 455 455 219 219 28694 150\n [Camera] 17-03-17 22:36:53.328 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-17 22:36:53.778 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 647 17-03-17 22:36:53.778 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 647 17-03-17 22:36:53.778 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 22:36:53.788 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 647 17-03-17 22:36:53.788 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 647 17-03-17 22:36:53.788 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 22:36:53.788 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 22:36:53.788 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start. 17-03-17 22:36:53.788 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 22:36:53.788 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start. 17-03-17 22:36:53.978 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28694 840 17-03-17 22:36:54.118 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning grn on 990 17-03-17 22:36:54.168 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 376 ms. 17-03-17 22:36:54.168 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms. 17-03-17 22:36:54.168 -07 000000438 INF: Camera: CopyActivePixFullImage start. 17-03-17 22:36:54.168 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 375 ms. 17-03-17 22:36:54.168 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms. 17-03-17 22:36:54.168 -07 000000576 INF: Camera: CopyActivePixFullImage start. 17-03-17 22:36:54.168 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-17 22:36:54.168 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms. 17-03-17 22:36:54.168 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-17 22:36:54.178 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms. 17-03-17 22:36:54.338 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1209 17-03-17 22:36:54.338 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1209 17-03-17 22:36:54.348 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 22:36:54.458 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1209 17-03-17 22:36:54.458 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1209 17-03-17 22:36:54.458 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 22:36:54.458 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 22:36:54.458 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 22:36:54.458 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 1406045800, 0x0, 418435064) start. 17-03-17 22:36:54.458 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start. 17-03-17 22:36:54.538 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP 1401 17-03-17 22:36:54.538 -07 000000382 INF: FPGA: Recv CAMDBLSNAP 17-03-17 22:36:54.538 -07 000000610 INF: FPGA: 'CAMDBLSNAP 455 455 219 219 28694 150' command took 2 ms to send, 1401 ms to get response, and 1408 ms overall 17-03-17 22:36:54.538 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503 17-03-17 22:36:54.538 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.02734375, Z-Position -0.13055712195296. ------ 17-03-17 22:36:54.538 -07 000000458 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 22:36:54.538 -07 000000462 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.13699 mm 17-03-17 22:36:54.538 -07 000000462 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-17 22:36:54.538 -07 000000576 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True) 17-03-17 22:36:54.538 -07 000000576 INF: Y Motor: Moving to 69.8726 mm, started at 69.0273 mm, delta = 0.8453 mm 17-03-17 22:36:54.538 -07 000000382 INF: FPGA: Recv FOCMRRCUR 17-03-17 22:36:54.548 -07 000000458 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall 17-03-17 22:36:54.548 -07 000000475 INF: Z Motor: Entering MoveAbsStepped (DAC = 29925, sync = True, waitForSettling = False) 17-03-17 22:36:54.548 -07 000000475 INF: Z Motor: Moving to -0.136988 mm, started at -0.130557 mm, distance = -6.43 um 17-03-17 22:36:54.548 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 22:36:54.548 -07 000000541 INF: FPGA: Recv YRDPOS 141369 17-03-17 22:36:54.558 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 22:36:54.558 -07 000000576 INF: Y Motor: Encoder = 141369 = motor step 110444.5 = 69.0278 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 22:36:54.558 -07 000000458 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror] 17-03-17 22:36:54.558 -07 000000576 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-17 22:36:54.558 -07 000000576 INF: Y Motor: Moving 1352 steps-31 17-03-17 22:36:54.568 -07 000000475 INF: FPGA: Xmit ZDACW 29925\n [Z Motor] 17-03-17 22:36:54.568 -07 000000623 INF: FPGA: Recv ZDACW 17-03-17 22:36:54.578 -07 000000475 INF: FPGA: 'ZDACW 29925' command took 0 ms to send, 0 ms to get response, and 29 ms overall 17-03-17 22:36:54.578 -07 000000576 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-17 22:36:54.588 -07 000000475 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 22:36:54.588 -07 000000623 INF: FPGA: Recv ZDACR 29925 17-03-17 22:36:54.598 -07 000000475 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall 17-03-17 22:36:54.598 -07 000000475 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet)) 17-03-17 22:36:54.758 -07 000000608 INF: FPGA: Recv FOCMRRFOC 17-03-17 22:36:54.758 -07 000000458 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 212 ms overall 17-03-17 22:36:54.848 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 1406045800, 0x0, 418435064) end. Duration was 389 ms. 17-03-17 22:36:54.848 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 390 ms. 17-03-17 22:36:54.848 -07 000000459 INF: Camera: CopyActivePixFullImage start. 17-03-17 22:36:54.848 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 390 ms. 17-03-17 22:36:54.848 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms. 17-03-17 22:36:54.858 -07 000000415 INF: Camera: CopyActivePixFullImage start. 17-03-17 22:36:54.858 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-17 22:36:54.858 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-17 22:36:54.858 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 514 ms. 17-03-17 22:36:54.868 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms. 17-03-17 22:36:54.948 -07 000000502 INF: FPGA: Recv YMVTILE 17-03-17 22:36:54.948 -07 000000576 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 393 ms overall 17-03-17 22:36:54.988 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 22:36:54.998 -07 000000415 INF: FPGA: Recv YRDPOS 143081 17-03-17 22:36:54.998 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 6 ms to get response, and 6 ms overall 17-03-17 22:36:54.998 -07 000000576 INF: Y Motor: Encoder = 143081 = motor step 111782.0 = 69.8638 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 22:36:54.998 -07 000000576 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm) 17-03-17 22:36:54.998 -07 000000576 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 393 ms, distance = 0.845 mm, average velocity = 2.151 mm/sec 17-03-17 22:36:55.948 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 22:36:55.948 -07 000000569 INF: FPGA: Recv YRDPOS 143081 17-03-17 22:36:55.958 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:55.958 -07 000000576 INF: Y Motor: Encoder = 143081 = motor step 111782.0 = 69.8638 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 22:36:55.978 -07 000000576 INF: Y Motor: After move to 69.872612, error = -0.008842, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm 17-03-17 22:36:55.978 -07 000000576 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm) 17-03-17 22:36:55.978 -07 000000576 INF: Y Motor: Moved to 69.8638 after 1437 ms (table move) 17-03-17 22:36:55.978 -07 000000462 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136988 mm (DAC = 29925) 17-03-17 22:36:55.978 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:55.988 -07 000000475 INF: FPGA: Recv ZSGSRD 30619 17-03-17 22:36:55.998 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 22:36:55.998 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:55.998 -07 000000608 INF: FPGA: Recv ZSGSRD 30610 17-03-17 22:36:56.008 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:56.008 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:56.008 -07 000000541 INF: FPGA: Recv ZSGSRD 30621 17-03-17 22:36:56.018 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:56.018 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:56.018 -07 000000551 INF: FPGA: Recv ZSGSRD 30616 17-03-17 22:36:56.028 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:56.038 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:56.038 -07 000000627 INF: FPGA: Recv ZSGSRD 30618 17-03-17 22:36:56.048 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall 17-03-17 22:36:56.048 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:56.048 -07 000000547 INF: FPGA: Recv ZSGSRD 30614 17-03-17 22:36:56.058 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:56.058 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:56.058 -07 000000541 INF: FPGA: Recv ZSGSRD 30611 17-03-17 22:36:56.068 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:56.068 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:56.068 -07 000000608 INF: FPGA: Recv ZSGSRD 30610 17-03-17 22:36:56.078 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:56.078 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:56.078 -07 000000415 INF: FPGA: Recv ZSGSRD 30615 17-03-17 22:36:56.088 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:56.088 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:56.088 -07 000000569 INF: FPGA: Recv ZSGSRD 30621 17-03-17 22:36:56.098 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:56.098 -07 000000462 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 22:36:56.098 -07 000000458 INF: FPGA: Recv ZPIEZORD 26593 17-03-17 22:36:56.108 -07 000000462 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:56.108 -07 000000462 INF: Z Motor: Piezo is near 36.8 V (nominally 0 to 100 V), expect near 45.7 V, since DAC is at 4.566 V. Piezo Error = -8.9 V. 17-03-17 22:36:56.108 -07 000000462 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.0 um, Read 10 ADC samples: Avg = 30616 (-136.2 uncal um), Error = 0.8 uncal um, Median = 30616 (-136.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30610 (-136.2 uncal um), Max = 30621 (-136.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um) 17-03-17 22:36:56.108 -07 000000462 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30616, posNoise = 5, negNoise = 6 17-03-17 22:36:56.108 -07 000000462 INF: Z Motor: After move to -0.136988, error = -0.000019, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 22:36:56.108 -07 000000462 INF: Z Motor: Settle wait time = 1439 ms, measure time = 121 ms (allowed 150 ms), total time = 1560 ms 17-03-17 22:36:56.108 -07 000000462 INF: Z Motor: Waiting extra 29 ms after reading position to reach expected total of 150 ms 17-03-17 22:36:56.138 -07 000000462 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1593 ms 17-03-17 22:36:56.138 -07 000000462 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-17 22:36:56.138 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 22:36:56.138 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 22:36:56.138 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 22:36:56.138 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger start. 17-03-17 22:36:56.138 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 22:36:56.138 -07 000000475 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 22:36:56.138 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 22:36:56.138 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start. 17-03-17 22:36:56.148 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms. 17-03-17 22:36:56.148 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start. 17-03-17 22:36:56.148 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms. 17-03-17 22:36:56.148 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms. 17-03-17 22:36:56.158 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera] 17-03-17 22:36:56.198 -07 000000475 INF: FPGA: Recv @CAMSNAP turning led on 40 17-03-17 22:36:56.398 -07 000000593 INF: FPGA: Recv @CAMSNAP img rdy 240 17-03-17 22:36:56.398 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240 17-03-17 22:36:56.398 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start. 17-03-17 22:36:56.398 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1458343128, 0x0, 559484976) start. 17-03-17 22:36:56.438 -07 000000482 INF: FPGA: Recv @CAMSNAP 280 17-03-17 22:36:56.438 -07 000000576 INF: FPGA: Recv CAMSNAP 17-03-17 22:36:56.438 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 284 ms overall 17-03-17 22:36:56.518 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1458343128, 0x0, 559484976) end. Duration was 115 ms. 17-03-17 22:36:56.518 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-17 22:36:56.518 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms. 17-03-17 22:36:56.518 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms. 17-03-17 22:36:56.538 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 22:36:56.538 -07 000000486 INF: Autofocus start 17-03-17 22:36:56.538 -07 000000486 INF: MeasureProfile start 17-03-17 22:36:56.538 -07 000000415 INF: FPGA: Recv FOCMRRCUR 17-03-17 22:36:56.548 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 1 ms to send, 0 ms to get response, and 6 ms overall 17-03-17 22:36:56.548 -07 000000462 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror] 17-03-17 22:36:56.548 -07 000000486 INF: MeasureProfile done 17-03-17 22:36:56.548 -07 000000486 INF: X=-16 Z correction [um]=-0.08128808 17-03-17 22:36:56.548 -07 000000486 INF: Autofocus finished 17-03-17 22:36:56.748 -07 000000458 INF: FPGA: Recv FOCMRRIMG 17-03-17 22:36:56.748 -07 000000462 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall 17-03-17 22:36:56.748 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86376953125, Z-position -0.137007030943288. ---------- 17-03-17 22:36:56.748 -07 000000610 INF: Cycle 65 Tile 13 Exposure Settings A 455 G 219 T 219 C 455 17-03-17 22:36:56.758 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28420, sync = True, waitForSettling = True) 17-03-17 22:36:56.758 -07 000000610 INF: Z Motor: Moving to -0.130098 mm, started at -0.137007 mm, distance = 6.91 um 17-03-17 22:36:56.758 -07 000000610 INF: FPGA: Xmit ZDACW 28420\n [Z Motor] 17-03-17 22:36:56.758 -07 000000541 INF: FPGA: Recv ZDACW 17-03-17 22:36:56.768 -07 000000610 INF: FPGA: 'ZDACW 28420' command took 0 ms to send, 0 ms to get response, and 7 ms overall 17-03-17 22:36:56.768 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 22:36:56.768 -07 000000547 INF: FPGA: Recv ZDACR 28420 17-03-17 22:36:56.778 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:56.778 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-17 22:36:56.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:56.928 -07 000000627 INF: FPGA: Recv ZSGSRD 29542 17-03-17 22:36:56.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 22:36:56.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:56.938 -07 000000551 INF: FPGA: Recv ZSGSRD 29541 17-03-17 22:36:56.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:56.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:56.948 -07 000000462 INF: FPGA: Recv ZSGSRD 29543 17-03-17 22:36:56.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:56.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:56.958 -07 000000541 INF: FPGA: Recv ZSGSRD 29542 17-03-17 22:36:56.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:56.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:56.968 -07 000000480 INF: FPGA: Recv ZSGSRD 29547 17-03-17 22:36:56.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:56.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:56.978 -07 000000475 INF: FPGA: Recv ZSGSRD 29542 17-03-17 22:36:56.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:56.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:56.988 -07 000000486 INF: FPGA: Recv ZSGSRD 29540 17-03-17 22:36:56.988 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 22:36:56.988 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 64. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1026, R2=1057, Total=2083. Warn if over 250 bubbles per interval. 17-03-17 22:36:56.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:56.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:56.998 -07 000000475 INF: FPGA: Recv ZSGSRD 29535 17-03-17 22:36:57.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:57.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:57.008 -07 000000486 INF: FPGA: Recv ZSGSRD 29534 17-03-17 22:36:57.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:57.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:57.018 -07 000000482 INF: FPGA: Recv ZSGSRD 29544 17-03-17 22:36:57.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:57.028 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 22:36:57.028 -07 000000459 INF: FPGA: Recv ZPIEZORD 25182 17-03-17 22:36:57.038 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:57.038 -07 000000610 INF: Z Motor: Piezo is near 33.8 V (nominally 0 to 100 V), expect near 43.4 V, since DAC is at 4.337 V. Piezo Error = -9.6 V. 17-03-17 22:36:57.038 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.1 um, Read 10 ADC samples: Avg = 29541 (-129.3 uncal um), Error = 0.8 uncal um, Median = 29542 (-129.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29534 (-129.3 uncal um), Max = 29547 (-129.4 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um) 17-03-17 22:36:57.038 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29541, posNoise = 6, negNoise = 7 17-03-17 22:36:57.038 -07 000000610 INF: Z Motor: After move to -0.130098, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 22:36:57.038 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms) 17-03-17 22:36:57.038 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 22:36:57.038 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 22:36:57.038 -07 000000458 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 22:36:57.038 -07 000000623 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 22:36:57.038 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-17 22:36:57.038 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 22:36:57.038 -07 000000482 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-17 22:36:57.038 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-17 22:36:57.038 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms. 17-03-17 22:36:57.038 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-17 22:36:57.038 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms. 17-03-17 22:36:57.038 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-17 22:36:57.048 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms. 17-03-17 22:36:57.048 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-17 22:36:57.048 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms. 17-03-17 22:36:57.048 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-17 22:36:57.058 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms. 17-03-17 22:36:57.058 -07 000000482 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms. 17-03-17 22:36:57.058 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms. 17-03-17 22:36:57.058 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms. 17-03-17 22:36:57.068 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 455 455 219 219 28596 150\n [Camera] 17-03-17 22:36:57.268 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-17 22:36:57.718 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 651 17-03-17 22:36:57.718 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 651 17-03-17 22:36:57.728 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 22:36:57.728 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 651 17-03-17 22:36:57.728 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 651 17-03-17 22:36:57.728 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 22:36:57.728 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 22:36:57.728 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start. 17-03-17 22:36:57.728 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 22:36:57.728 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start. 17-03-17 22:36:57.908 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28596 840 17-03-17 22:36:58.058 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP turning grn on 990 17-03-17 22:36:58.118 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 387 ms. 17-03-17 22:36:58.118 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms. 17-03-17 22:36:58.118 -07 000000547 INF: Camera: CopyActivePixFullImage start. 17-03-17 22:36:58.118 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 383 ms. 17-03-17 22:36:58.118 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms. 17-03-17 22:36:58.118 -07 000000438 INF: Camera: CopyActivePixFullImage start. 17-03-17 22:36:58.118 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-17 22:36:58.118 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms. 17-03-17 22:36:58.118 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-17 22:36:58.128 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 401 ms. 17-03-17 22:36:58.278 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1209 17-03-17 22:36:58.278 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1209 17-03-17 22:36:58.278 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 22:36:58.288 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1209 17-03-17 22:36:58.288 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1209 17-03-17 22:36:58.288 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 22:36:58.288 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 22:36:58.288 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start. 17-03-17 22:36:58.288 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 22:36:58.288 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 1406045800, 0x0, 418435064) start. 17-03-17 22:36:58.368 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 65, FrontChillerTemperature: 4.011254, 17-03-17 22:36:58.468 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP 1402 17-03-17 22:36:58.468 -07 000000547 INF: FPGA: Recv CAMDBLSNAP 17-03-17 22:36:58.468 -07 000000610 INF: FPGA: 'CAMDBLSNAP 455 455 219 219 28596 150' command took 2 ms to send, 1399 ms to get response, and 1409 ms overall 17-03-17 22:36:58.478 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503 17-03-17 22:36:58.478 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.86376953125, Z-Position -0.130101002890895. ------ 17-03-17 22:36:58.478 -07 000000627 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.13639 mm 17-03-17 22:36:58.478 -07 000000627 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-17 22:36:58.478 -07 000000459 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 22:36:58.478 -07 000000541 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True) 17-03-17 22:36:58.478 -07 000000541 INF: Y Motor: Moving to 70.7026 mm, started at 69.8638 mm, delta = 0.8388 mm 17-03-17 22:36:58.478 -07 000000551 INF: Z Motor: Entering MoveAbsStepped (DAC = 29795, sync = True, waitForSettling = False) 17-03-17 22:36:58.478 -07 000000551 INF: Z Motor: Moving to -0.136393 mm, started at -0.130101 mm, distance = -6.29 um 17-03-17 22:36:58.488 -07 000000551 INF: FPGA: Xmit ZDACW 29795\n [Z Motor] 17-03-17 22:36:58.488 -07 000000438 INF: FPGA: Recv FOCMRRCUR 17-03-17 22:36:58.488 -07 000000459 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall 17-03-17 22:36:58.488 -07 000000623 INF: FPGA: Recv ZDACW 17-03-17 22:36:58.498 -07 000000551 INF: FPGA: 'ZDACW 29795' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 22:36:58.498 -07 000000459 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror] 17-03-17 22:36:58.508 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 22:36:58.508 -07 000000547 INF: FPGA: Recv YRDPOS 143081 17-03-17 22:36:58.518 -07 000000551 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 22:36:58.518 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 30 ms overall 17-03-17 22:36:58.518 -07 000000541 INF: Y Motor: Encoder = 143081 = motor step 111782.0 = 69.8638 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 22:36:58.518 -07 000000541 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-17 22:36:58.518 -07 000000541 INF: Y Motor: Moving 1342 steps-18 17-03-17 22:36:58.518 -07 000000382 INF: FPGA: Recv ZDACR 29795 17-03-17 22:36:58.528 -07 000000551 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall 17-03-17 22:36:58.528 -07 000000551 INF: Z Motor: MoveAbsStepped took 40 ms (did NOT wait for settling yet)) 17-03-17 22:36:58.528 -07 000000541 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-17 22:36:58.678 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 1406045800, 0x0, 418435064) end. Duration was 384 ms. 17-03-17 22:36:58.678 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms. 17-03-17 22:36:58.678 -07 000000576 INF: Camera: CopyActivePixFullImage start. 17-03-17 22:36:58.678 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 22:36:58.678 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 391 ms. 17-03-17 22:36:58.678 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms. 17-03-17 22:36:58.678 -07 000000415 INF: Camera: CopyActivePixFullImage start. 17-03-17 22:36:58.688 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 22:36:58.688 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms. 17-03-17 22:36:58.688 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 401 ms. 17-03-17 22:36:58.698 -07 000000502 INF: FPGA: Recv FOCMRRFOC 17-03-17 22:36:58.698 -07 000000459 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 199 ms to get response, and 218 ms overall 17-03-17 22:36:58.898 -07 000000459 INF: FPGA: Recv YMVTILE 17-03-17 22:36:58.898 -07 000000541 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall 17-03-17 22:36:58.938 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 22:36:58.948 -07 000000623 INF: FPGA: Recv YRDPOS 144770 17-03-17 22:36:58.948 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall 17-03-17 22:36:58.948 -07 000000541 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 22:36:58.948 -07 000000541 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm) 17-03-17 22:36:58.948 -07 000000541 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.839 mm, average velocity = 2.168 mm/sec 17-03-17 22:36:59.898 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 22:36:59.898 -07 000000480 INF: FPGA: Recv YRDPOS 144771 17-03-17 22:36:59.908 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:59.908 -07 000000541 INF: Y Motor: Encoder = 144771 = motor step 113102.3 = 70.6890 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 22:36:59.928 -07 000000541 INF: Y Motor: After move to 70.702606, error = -0.013641, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm 17-03-17 22:36:59.928 -07 000000541 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 1 counts (0.000 mm) 17-03-17 22:36:59.928 -07 000000541 INF: Y Motor: Moved to 70.6890 after 1446 ms (table move) 17-03-17 22:36:59.928 -07 000000627 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136393 mm (DAC = 29795) 17-03-17 22:36:59.928 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:59.938 -07 000000475 INF: FPGA: Recv ZSGSRD 30530 17-03-17 22:36:59.938 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall 17-03-17 22:36:59.938 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:59.938 -07 000000623 INF: FPGA: Recv ZSGSRD 30520 17-03-17 22:36:59.948 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall 17-03-17 22:36:59.948 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:59.948 -07 000000458 INF: FPGA: Recv ZSGSRD 30519 17-03-17 22:36:59.958 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:59.958 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:59.958 -07 000000593 INF: FPGA: Recv ZSGSRD 30522 17-03-17 22:36:59.968 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:59.968 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:59.968 -07 000000459 INF: FPGA: Recv ZSGSRD 30527 17-03-17 22:36:59.978 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:59.978 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:59.978 -07 000000551 INF: FPGA: Recv ZSGSRD 30529 17-03-17 22:36:59.988 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:59.988 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:59.988 -07 000000623 INF: FPGA: Recv ZSGSRD 30520 17-03-17 22:36:59.998 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:36:59.998 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:36:59.998 -07 000000480 INF: FPGA: Recv ZSGSRD 30515 17-03-17 22:37:00.008 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:37:00.008 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:37:00.008 -07 000000482 INF: FPGA: Recv ZSGSRD 30518 17-03-17 22:37:00.018 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:37:00.018 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:37:00.018 -07 000000576 INF: FPGA: Recv ZSGSRD 30520 17-03-17 22:37:00.028 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:37:00.028 -07 000000627 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 22:37:00.028 -07 000000551 INF: FPGA: Recv ZPIEZORD 26507 17-03-17 22:37:00.038 -07 000000627 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:37:00.038 -07 000000627 INF: Z Motor: Piezo is near 36.6 V (nominally 0 to 100 V), expect near 45.5 V, since DAC is at 4.546 V. Piezo Error = -8.8 V. 17-03-17 22:37:00.038 -07 000000627 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.4 um, Read 10 ADC samples: Avg = 30522 (-135.6 uncal um), Error = 0.8 uncal um, Median = 30520 (-135.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30515 (-135.6 uncal um), Max = 30530 (-135.7 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um) 17-03-17 22:37:00.038 -07 000000627 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30522, posNoise = 8, negNoise = 7 17-03-17 22:37:00.038 -07 000000627 INF: Z Motor: After move to -0.136393, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 22:37:00.038 -07 000000627 INF: Z Motor: Settle wait time = 1448 ms, measure time = 103 ms (allowed 150 ms), total time = 1551 ms 17-03-17 22:37:00.038 -07 000000627 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms 17-03-17 22:37:00.088 -07 000000627 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1603 ms 17-03-17 22:37:00.088 -07 000000627 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-17 22:37:00.088 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 22:37:00.088 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 22:37:00.088 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 22:37:00.088 -07 000000547 INF: Disarm and arm camera sensor 0: ROITrigger start. 17-03-17 22:37:00.088 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 22:37:00.088 -07 000000623 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 22:37:00.088 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 22:37:00.088 -07 000000547 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start. 17-03-17 22:37:00.098 -07 000000547 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms. 17-03-17 22:37:00.098 -07 000000547 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start. 17-03-17 22:37:00.108 -07 000000547 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms. 17-03-17 22:37:00.108 -07 000000547 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms. 17-03-17 22:37:00.108 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera] 17-03-17 22:37:00.158 -07 000000486 INF: FPGA: Recv @CAMSNAP turning led on 40 17-03-17 22:37:00.358 -07 000000415 INF: FPGA: Recv @CAMSNAP img rdy 240 17-03-17 22:37:00.358 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240 17-03-17 22:37:00.358 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start. 17-03-17 22:37:00.358 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1458343128, 0x0, 559484976) start. 17-03-17 22:37:00.398 -07 000000623 INF: FPGA: Recv @CAMSNAP 280 17-03-17 22:37:00.398 -07 000000608 INF: FPGA: Recv CAMSNAP 17-03-17 22:37:00.398 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 284 ms overall 17-03-17 22:37:00.488 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1458343128, 0x0, 559484976) end. Duration was 126 ms. 17-03-17 22:37:00.488 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-17 22:37:00.488 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms. 17-03-17 22:37:00.488 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms. 17-03-17 22:37:00.498 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 22:37:00.498 -07 000000458 INF: Autofocus start 17-03-17 22:37:00.498 -07 000000458 INF: MeasureProfile start 17-03-17 22:37:00.498 -07 000000438 INF: FPGA: Recv FOCMRRCUR 17-03-17 22:37:00.508 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-17 22:37:00.508 -07 000000480 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror] 17-03-17 22:37:00.508 -07 000000458 INF: MeasureProfile done 17-03-17 22:37:00.508 -07 000000458 INF: X=32 Z correction [um]=0.1299841 17-03-17 22:37:00.508 -07 000000458 INF: Autofocus finished 17-03-17 22:37:00.708 -07 000000623 INF: FPGA: Recv FOCMRRIMG 17-03-17 22:37:00.708 -07 000000480 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall 17-03-17 22:37:00.708 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.68896484375, Z-position -0.136403155001963. ---------- 17-03-17 22:37:00.708 -07 000000610 INF: Cycle 65 Tile 14 Exposure Settings A 455 G 219 T 219 C 455 17-03-17 22:37:00.718 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28336, sync = True, waitForSettling = True) 17-03-17 22:37:00.718 -07 000000610 INF: Z Motor: Moving to -0.129714 mm, started at -0.136403 mm, distance = 6.69 um 17-03-17 22:37:00.718 -07 000000610 INF: FPGA: Xmit ZDACW 28336\n [Z Motor] 17-03-17 22:37:00.718 -07 000000502 INF: FPGA: Recv ZDACW 17-03-17 22:37:00.728 -07 000000610 INF: FPGA: 'ZDACW 28336' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:37:00.728 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 22:37:00.728 -07 000000482 INF: FPGA: Recv ZDACR 28336 17-03-17 22:37:00.738 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:37:00.738 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-17 22:37:00.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:37:00.888 -07 000000486 INF: FPGA: Recv ZSGSRD 29477 17-03-17 22:37:00.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 22:37:00.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:37:00.898 -07 000000541 INF: FPGA: Recv ZSGSRD 29478 17-03-17 22:37:00.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:37:00.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:37:00.908 -07 000000475 INF: FPGA: Recv ZSGSRD 29484 17-03-17 22:37:00.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:37:00.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:37:00.918 -07 000000415 INF: FPGA: Recv ZSGSRD 29475 17-03-17 22:37:00.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:37:00.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:37:00.928 -07 000000608 INF: FPGA: Recv ZSGSRD 29483 17-03-17 22:37:00.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:37:00.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:37:00.938 -07 000000462 INF: FPGA: Recv ZSGSRD 29485 17-03-17 22:37:00.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:37:00.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:37:00.948 -07 000000541 INF: FPGA: Recv ZSGSRD 29479 17-03-17 22:37:00.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:37:00.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:37:00.958 -07 000000608 INF: FPGA: Recv ZSGSRD 29479 17-03-17 22:37:00.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:37:00.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:37:00.968 -07 000000438 INF: FPGA: Recv ZSGSRD 29475 17-03-17 22:37:00.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:37:00.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:37:00.978 -07 000000502 INF: FPGA: Recv ZSGSRD 29485 17-03-17 22:37:00.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:37:00.988 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 22:37:00.988 -07 000000547 INF: FPGA: Recv ZPIEZORD 25107 17-03-17 22:37:00.998 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:37:00.998 -07 000000610 INF: Z Motor: Piezo is near 33.6 V (nominally 0 to 100 V), expect near 43.2 V, since DAC is at 4.324 V. Piezo Error = -9.6 V. 17-03-17 22:37:00.998 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.7 um, Read 10 ADC samples: Avg = 29480 (-128.9 uncal um), Error = 0.8 uncal um, Median = 29479 (-128.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29475 (-128.9 uncal um), Max = 29485 (-129.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um) 17-03-17 22:37:00.998 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29480, posNoise = 5, negNoise = 5 17-03-17 22:37:00.998 -07 000000610 INF: Z Motor: After move to -0.129714, error = 0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 22:37:00.998 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms) 17-03-17 22:37:00.998 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 22:37:00.998 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 22:37:00.998 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 22:37:00.998 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 22:37:00.998 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-17 22:37:00.998 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 22:37:00.998 -07 000000551 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-17 22:37:00.998 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-17 22:37:00.998 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms. 17-03-17 22:37:00.998 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-17 22:37:00.998 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms. 17-03-17 22:37:00.998 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-17 22:37:01.008 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms. 17-03-17 22:37:01.008 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-17 22:37:01.008 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms. 17-03-17 22:37:01.008 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-17 22:37:01.008 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms. 17-03-17 22:37:01.008 -07 000000551 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms. 17-03-17 22:37:01.018 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms. 17-03-17 22:37:01.018 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms. 17-03-17 22:37:01.018 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 455 455 219 219 28512 150\n [Camera] 17-03-17 22:37:01.218 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-17 22:37:01.668 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 647 17-03-17 22:37:01.668 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 647 17-03-17 22:37:01.678 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 22:37:01.678 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 647 17-03-17 22:37:01.678 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 647 17-03-17 22:37:01.678 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 22:37:01.678 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 22:37:01.678 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start. 17-03-17 22:37:01.678 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 22:37:01.678 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) start. 17-03-17 22:37:01.868 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28512 840 17-03-17 22:37:01.988 -07 000000486 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 22:37:01.988 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 64. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1026, R2=1057, Total=2083. Warn if over 250 bubbles per interval. 17-03-17 22:37:02.018 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP turning grn on 990 17-03-17 22:37:02.058 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 377 ms. 17-03-17 22:37:02.058 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms. 17-03-17 22:37:02.058 -07 000000608 INF: Camera: CopyActivePixFullImage start. 17-03-17 22:37:02.058 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) end. Duration was 376 ms. 17-03-17 22:37:02.058 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms. 17-03-17 22:37:02.058 -07 000000627 INF: Camera: CopyActivePixFullImage start. 17-03-17 22:37:02.058 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms. 17-03-17 22:37:02.058 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms. 17-03-17 22:37:02.058 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms. 17-03-17 22:37:02.068 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms. 17-03-17 22:37:02.238 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1209 17-03-17 22:37:02.238 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1209 17-03-17 22:37:02.238 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 22:37:02.238 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1209 17-03-17 22:37:02.238 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1209 17-03-17 22:37:02.238 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 22:37:02.238 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start. 17-03-17 22:37:02.238 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 22:37:02.238 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 22:37:02.238 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start. 17-03-17 22:37:02.428 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP 1401 17-03-17 22:37:02.428 -07 000000608 INF: FPGA: Recv CAMDBLSNAP 17-03-17 22:37:02.428 -07 000000610 INF: FPGA: 'CAMDBLSNAP 455 455 219 219 28512 150' command took 2 ms to send, 1403 ms to get response, and 1408 ms overall 17-03-17 22:37:02.428 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503 17-03-17 22:37:02.428 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.68896484375, Z-Position -0.129709125950248. ------ 17-03-17 22:37:02.438 -07 000000475 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 22:37:02.438 -07 000000462 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.13642 mm 17-03-17 22:37:02.438 -07 000000462 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-17 22:37:02.438 -07 000000480 INF: FPGA: Recv FOCMRRCUR 17-03-17 22:37:02.438 -07 000000502 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True) 17-03-17 22:37:02.438 -07 000000593 INF: Z Motor: Entering MoveAbsStepped (DAC = 29802, sync = True, waitForSettling = False) 17-03-17 22:37:02.438 -07 000000502 INF: Y Motor: Moving to 71.5326 mm, started at 70.6890 mm, delta = 0.8436 mm 17-03-17 22:37:02.438 -07 000000593 INF: Z Motor: Moving to -0.136425 mm, started at -0.129709 mm, distance = -6.72 um 17-03-17 22:37:02.448 -07 000000475 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:37:02.448 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 22:37:02.448 -07 000000608 INF: FPGA: Recv YRDPOS 144771 17-03-17 22:37:02.458 -07 000000593 INF: FPGA: Xmit ZDACW 29802\n [Z Motor] 17-03-17 22:37:02.458 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 14 ms overall 17-03-17 22:37:02.458 -07 000000502 INF: Y Motor: Encoder = 144771 = motor step 113102.3 = 70.6890 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 22:37:02.458 -07 000000502 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-17 22:37:02.458 -07 000000502 INF: Y Motor: Moving 1350 steps-29 17-03-17 22:37:02.458 -07 000000482 INF: FPGA: Recv ZDACW 17-03-17 22:37:02.468 -07 000000475 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror] 17-03-17 22:37:02.468 -07 000000593 INF: FPGA: 'ZDACW 29802' command took 0 ms to send, 0 ms to get response, and 24 ms overall 17-03-17 22:37:02.478 -07 000000502 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-17 22:37:02.488 -07 000000593 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 22:37:02.488 -07 000000569 INF: FPGA: Recv ZDACR 29802 17-03-17 22:37:02.498 -07 000000593 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall 17-03-17 22:37:02.498 -07 000000593 INF: Z Motor: MoveAbsStepped took 54 ms (did NOT wait for settling yet)) 17-03-17 22:37:02.618 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 382 ms. 17-03-17 22:37:02.618 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms. 17-03-17 22:37:02.618 -07 000000627 INF: Camera: CopyActivePixFullImage start. 17-03-17 22:37:02.618 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 383 ms. 17-03-17 22:37:02.618 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms. 17-03-17 22:37:02.618 -07 000000551 INF: Camera: CopyActivePixFullImage start. 17-03-17 22:37:02.628 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms. 17-03-17 22:37:02.628 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-17 22:37:02.628 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms. 17-03-17 22:37:02.638 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms. 17-03-17 22:37:02.668 -07 000000438 INF: FPGA: Recv FOCMRRFOC 17-03-17 22:37:02.668 -07 000000475 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall 17-03-17 22:37:02.848 -07 000000382 INF: FPGA: Recv YMVTILE 17-03-17 22:37:02.848 -07 000000502 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall 17-03-17 22:37:02.888 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 22:37:02.898 -07 000000593 INF: FPGA: Recv YRDPOS 146471 17-03-17 22:37:02.898 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall 17-03-17 22:37:02.898 -07 000000502 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 22:37:02.898 -07 000000502 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm) 17-03-17 22:37:02.898 -07 000000502 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.844 mm, average velocity = 2.125 mm/sec 17-03-17 22:37:03.728 -07 000000482 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 65, FrontChillerTemperature: 4.026244, 17-03-17 22:37:03.848 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 22:37:03.848 -07 000000547 INF: FPGA: Recv YRDPOS 146471 17-03-17 22:37:03.858 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:37:03.858 -07 000000502 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 22:37:03.878 -07 000000502 INF: Y Motor: After move to 71.532608, error = -0.013565, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm 17-03-17 22:37:03.878 -07 000000502 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm) 17-03-17 22:37:03.878 -07 000000502 INF: Y Motor: Moved to 71.5190 after 1440 ms (table move) 17-03-17 22:37:03.878 -07 000000462 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136425 mm (DAC = 29802) 17-03-17 22:37:03.878 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:37:03.888 -07 000000486 INF: FPGA: Recv ZSGSRD 30532 17-03-17 22:37:03.888 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall 17-03-17 22:37:03.888 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:37:03.888 -07 000000438 INF: FPGA: Recv ZSGSRD 30528 17-03-17 22:37:03.898 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall 17-03-17 22:37:03.898 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:37:03.898 -07 000000415 INF: FPGA: Recv ZSGSRD 30525 17-03-17 22:37:03.908 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:37:03.908 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:37:03.908 -07 000000475 INF: FPGA: Recv ZSGSRD 30523 17-03-17 22:37:03.918 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:37:03.918 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:37:03.918 -07 000000593 INF: FPGA: Recv ZSGSRD 30526 17-03-17 22:37:03.928 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:37:03.928 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:37:03.928 -07 000000627 INF: FPGA: Recv ZSGSRD 30534 17-03-17 22:37:03.938 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:37:03.938 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:37:03.938 -07 000000480 INF: FPGA: Recv ZSGSRD 30527 17-03-17 22:37:03.948 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:37:03.948 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:37:03.948 -07 000000547 INF: FPGA: Recv ZSGSRD 30527 17-03-17 22:37:03.958 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:37:03.958 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:37:03.958 -07 000000459 INF: FPGA: Recv ZSGSRD 30526 17-03-17 22:37:03.968 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall 17-03-17 22:37:03.968 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:37:03.968 -07 000000475 INF: FPGA: Recv ZSGSRD 30521 17-03-17 22:37:03.978 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:37:03.978 -07 000000462 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 22:37:03.978 -07 000000482 INF: FPGA: Recv ZPIEZORD 26479 17-03-17 22:37:03.988 -07 000000462 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:37:03.988 -07 000000462 INF: Z Motor: Piezo is near 36.6 V (nominally 0 to 100 V), expect near 45.5 V, since DAC is at 4.547 V. Piezo Error = -8.9 V. 17-03-17 22:37:03.988 -07 000000462 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.4 um, Read 10 ADC samples: Avg = 30527 (-135.6 uncal um), Error = 0.8 uncal um, Median = 30526 (-135.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30521 (-135.6 uncal um), Max = 30534 (-135.7 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um) 17-03-17 22:37:03.988 -07 000000462 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30527, posNoise = 7, negNoise = 6 17-03-17 22:37:03.988 -07 000000462 INF: Z Motor: After move to -0.136425, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 22:37:03.988 -07 000000462 INF: Z Motor: Settle wait time = 1443 ms, measure time = 102 ms (allowed 150 ms), total time = 1545 ms 17-03-17 22:37:03.988 -07 000000462 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms 17-03-17 22:37:04.038 -07 000000462 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1598 ms 17-03-17 22:37:04.038 -07 000000462 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-17 22:37:04.038 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 22:37:04.038 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 22:37:04.038 -07 000000623 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 22:37:04.038 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 22:37:04.038 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger start. 17-03-17 22:37:04.038 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 22:37:04.038 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 22:37:04.038 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start. 17-03-17 22:37:04.048 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms. 17-03-17 22:37:04.048 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start. 17-03-17 22:37:04.048 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms. 17-03-17 22:37:04.048 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms. 17-03-17 22:37:04.078 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera] 17-03-17 22:37:04.118 -07 000000415 INF: FPGA: Recv @CAMSNAP turning led on 40 17-03-17 22:37:04.318 -07 000000593 INF: FPGA: Recv @CAMSNAP img rdy 240 17-03-17 22:37:04.318 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240 17-03-17 22:37:04.318 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start. 17-03-17 22:37:04.318 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 619151688, 0x0, 559484976) start. 17-03-17 22:37:04.358 -07 000000569 INF: FPGA: Recv @CAMSNAP 280 17-03-17 22:37:04.358 -07 000000459 INF: FPGA: Recv CAMSNAP 17-03-17 22:37:04.358 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 274 ms to get response, and 302 ms overall 17-03-17 22:37:04.438 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 619151688, 0x0, 559484976) end. Duration was 116 ms. 17-03-17 22:37:04.438 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-17 22:37:04.438 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms. 17-03-17 22:37:04.438 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms. 17-03-17 22:37:04.458 -07 000000458 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 22:37:04.458 -07 000000623 INF: Autofocus start 17-03-17 22:37:04.458 -07 000000623 INF: MeasureProfile start 17-03-17 22:37:04.458 -07 000000627 INF: FPGA: Recv FOCMRRCUR 17-03-17 22:37:04.468 -07 000000458 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall 17-03-17 22:37:04.468 -07 000000458 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror] 17-03-17 22:37:04.468 -07 000000623 INF: MeasureProfile done 17-03-17 22:37:04.468 -07 000000623 INF: X=-128 Z correction [um]=-0.6264838 17-03-17 22:37:04.468 -07 000000623 INF: Autofocus finished 17-03-17 22:37:04.668 -07 000000382 INF: FPGA: Recv FOCMRRIMG 17-03-17 22:37:04.668 -07 000000458 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 202 ms overall 17-03-17 22:37:04.668 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.51904296875, Z-position -0.136435276062672. ---------- 17-03-17 22:37:04.678 -07 000000610 INF: Cycle 65 Tile 15 Exposure Settings A 455 G 219 T 219 C 455 17-03-17 22:37:04.678 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28178, sync = True, waitForSettling = True) 17-03-17 22:37:04.678 -07 000000610 INF: Z Motor: Moving to -0.128991 mm, started at -0.136435 mm, distance = 7.44 um 17-03-17 22:37:04.678 -07 000000610 INF: FPGA: Xmit ZDACW 28178\n [Z Motor] 17-03-17 22:37:04.678 -07 000000576 INF: FPGA: Recv ZDACW 17-03-17 22:37:04.688 -07 000000610 INF: FPGA: 'ZDACW 28178' command took 0 ms to send, 0 ms to get response, and 7 ms overall 17-03-17 22:37:04.688 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 22:37:04.688 -07 000000541 INF: FPGA: Recv ZDACR 28178 17-03-17 22:37:04.698 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:37:04.698 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-17 22:37:04.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:37:04.848 -07 000000480 INF: FPGA: Recv ZSGSRD 29365 17-03-17 22:37:04.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 22:37:04.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:37:04.858 -07 000000475 INF: FPGA: Recv ZSGSRD 29375 17-03-17 22:37:04.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:37:04.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:37:04.868 -07 000000627 INF: FPGA: Recv ZSGSRD 29367 17-03-17 22:37:04.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:37:04.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:37:04.878 -07 000000438 INF: FPGA: Recv ZSGSRD 29366 17-03-17 22:37:04.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:37:04.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:37:04.888 -07 000000608 INF: FPGA: Recv ZSGSRD 29371 17-03-17 22:37:04.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:37:04.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:37:04.898 -07 000000415 INF: FPGA: Recv ZSGSRD 29367 17-03-17 22:37:04.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:37:04.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:37:04.908 -07 000000551 INF: FPGA: Recv ZSGSRD 29373 17-03-17 22:37:04.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:37:04.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:37:04.918 -07 000000382 INF: FPGA: Recv ZSGSRD 29362 17-03-17 22:37:04.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:37:04.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:37:04.928 -07 000000486 INF: FPGA: Recv ZSGSRD 29371 17-03-17 22:37:04.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:37:04.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:37:04.938 -07 000000541 INF: FPGA: Recv ZSGSRD 29371 17-03-17 22:37:04.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:37:04.948 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 22:37:04.948 -07 000000482 INF: FPGA: Recv ZPIEZORD 24994 17-03-17 22:37:04.958 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:37:04.958 -07 000000610 INF: Z Motor: Piezo is near 33.4 V (nominally 0 to 100 V), expect near 43.0 V, since DAC is at 4.300 V. Piezo Error = -9.6 V. 17-03-17 22:37:04.958 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.0 um, Read 10 ADC samples: Avg = 29369 (-128.2 uncal um), Error = 0.8 uncal um, Median = 29369 (-128.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29362 (-128.2 uncal um), Max = 29375 (-128.3 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um) 17-03-17 22:37:04.958 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29369, posNoise = 6, negNoise = 7 17-03-17 22:37:04.958 -07 000000610 INF: Z Motor: After move to -0.128991, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 22:37:04.958 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms) 17-03-17 22:37:04.958 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 22:37:04.958 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 22:37:04.958 -07 000000459 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 22:37:04.958 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 22:37:04.958 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-17 22:37:04.958 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 22:37:04.958 -07 000000541 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-17 22:37:04.958 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-17 22:37:04.958 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 22:37:04.958 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-17 22:37:04.958 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms. 17-03-17 22:37:04.958 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-17 22:37:04.968 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms. 17-03-17 22:37:04.968 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-17 22:37:04.968 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms. 17-03-17 22:37:04.968 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-17 22:37:04.978 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms. 17-03-17 22:37:04.978 -07 000000541 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms. 17-03-17 22:37:04.978 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms. 17-03-17 22:37:04.978 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms. 17-03-17 22:37:04.978 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 455 455 219 219 28354 150\n [Camera] 17-03-17 22:37:05.178 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-17 22:37:05.628 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 647 17-03-17 22:37:05.628 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 647 17-03-17 22:37:05.628 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 22:37:05.628 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 22:37:05.628 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start. 17-03-17 22:37:05.638 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 647 17-03-17 22:37:05.638 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 647 17-03-17 22:37:05.638 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 22:37:05.638 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 22:37:05.638 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start. 17-03-17 22:37:05.828 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28354 841 17-03-17 22:37:05.978 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP turning grn on 990 17-03-17 22:37:06.018 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 388 ms. 17-03-17 22:37:06.018 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms. 17-03-17 22:37:06.018 -07 000000475 INF: Camera: CopyActivePixFullImage start. 17-03-17 22:37:06.018 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 385 ms. 17-03-17 22:37:06.018 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms. 17-03-17 22:37:06.018 -07 000000627 INF: Camera: CopyActivePixFullImage start. 17-03-17 22:37:06.028 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-17 22:37:06.028 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms. 17-03-17 22:37:06.028 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 394 ms. 17-03-17 22:37:06.028 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms. 17-03-17 22:37:06.198 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1209 17-03-17 22:37:06.198 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1209 17-03-17 22:37:06.198 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 22:37:06.198 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 22:37:06.198 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start. 17-03-17 22:37:06.198 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1209 17-03-17 22:37:06.198 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1209 17-03-17 22:37:06.198 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 22:37:06.198 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 22:37:06.198 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) start. 17-03-17 22:37:06.388 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP 1401 17-03-17 22:37:06.388 -07 000000475 INF: FPGA: Recv CAMDBLSNAP 17-03-17 22:37:06.388 -07 000000610 INF: FPGA: 'CAMDBLSNAP 455 455 219 219 28354 150' command took 2 ms to send, 1402 ms to get response, and 1409 ms overall 17-03-17 22:37:06.388 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503 17-03-17 22:37:06.388 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.51904296875, Z-Position -0.128996038402513. ------ 17-03-17 22:37:06.388 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 22:37:06.388 -07 000000623 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.13532 mm 17-03-17 22:37:06.388 -07 000000623 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-17 22:37:06.388 -07 000000382 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True) 17-03-17 22:37:06.388 -07 000000382 INF: Y Motor: Moving to 72.3626 mm, started at 71.5190 mm, delta = 0.8436 mm 17-03-17 22:37:06.388 -07 000000475 INF: FPGA: Recv FOCMRRCUR 17-03-17 22:37:06.398 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall 17-03-17 22:37:06.398 -07 000000462 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror] 17-03-17 22:37:06.398 -07 000000438 INF: Z Motor: Entering MoveAbsStepped (DAC = 29561, sync = True, waitForSettling = False) 17-03-17 22:37:06.398 -07 000000438 INF: Z Motor: Moving to -0.135322 mm, started at -0.128996 mm, distance = -6.33 um 17-03-17 22:37:06.408 -07 000000438 INF: FPGA: Xmit ZDACW 29561\n [Z Motor] 17-03-17 22:37:06.408 -07 000000627 INF: FPGA: Recv ZDACW 17-03-17 22:37:06.418 -07 000000438 INF: FPGA: 'ZDACW 29561' command took 0 ms to send, 0 ms to get response, and 19 ms overall 17-03-17 22:37:06.418 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 22:37:06.418 -07 000000608 INF: FPGA: Recv YRDPOS 146472 17-03-17 22:37:06.428 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 30 ms overall 17-03-17 22:37:06.428 -07 000000438 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 22:37:06.428 -07 000000382 INF: Y Motor: Encoder = 146472 = motor step 114431.3 = 71.5195 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 22:37:06.428 -07 000000502 INF: FPGA: Recv ZDACR 29561 17-03-17 22:37:06.428 -07 000000382 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-17 22:37:06.428 -07 000000382 INF: Y Motor: Moving 1349 steps-28 17-03-17 22:37:06.438 -07 000000438 INF: FPGA: 'ZDACR' command took 2 ms to send, 0 ms to get response, and 19 ms overall 17-03-17 22:37:06.438 -07 000000438 INF: Z Motor: MoveAbsStepped took 39 ms (did NOT wait for settling yet)) 17-03-17 22:37:06.438 -07 000000382 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-17 22:37:06.588 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 396 ms. 17-03-17 22:37:06.588 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms. 17-03-17 22:37:06.588 -07 000000459 INF: Camera: CopyActivePixFullImage start. 17-03-17 22:37:06.588 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) end. Duration was 392 ms. 17-03-17 22:37:06.588 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms. 17-03-17 22:37:06.588 -07 000000541 INF: Camera: CopyActivePixFullImage start. 17-03-17 22:37:06.598 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 22:37:06.598 -07 000000593 INF: FPGA: Recv FOCMRRFOC 17-03-17 22:37:06.598 -07 000000462 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall 17-03-17 22:37:06.598 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms. 17-03-17 22:37:06.598 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms. 17-03-17 22:37:06.598 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 404 ms. 17-03-17 22:37:06.808 -07 000000458 INF: FPGA: Recv YMVTILE 17-03-17 22:37:06.808 -07 000000382 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 381 ms overall 17-03-17 22:37:06.848 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 22:37:06.858 -07 000000547 INF: FPGA: Recv YRDPOS 148172 17-03-17 22:37:06.858 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 2 ms overall 17-03-17 22:37:06.858 -07 000000382 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 22:37:06.858 -07 000000382 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm) 17-03-17 22:37:06.858 -07 000000382 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 382 ms, distance = 0.844 mm, average velocity = 2.208 mm/sec 17-03-17 22:37:06.988 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 22:37:06.988 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 64. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1026, R2=1057, Total=2083. Warn if over 250 bubbles per interval. 17-03-17 22:37:07.808 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 22:37:07.808 -07 000000475 INF: FPGA: Recv YRDPOS 148172 17-03-17 22:37:07.818 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 22:37:07.818 -07 000000382 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 22:37:07.838 -07 000000382 INF: Y Motor: After move to 72.362610, error = -0.013000, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm 17-03-17 22:37:07.838 -07 000000382 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm) 17-03-17 22:37:07.838 -07 000000382 INF: Y Motor: Moved to 72.3496 after 1446 ms (table move) 17-03-17 22:37:07.838 -07 000000623 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135322 mm (DAC = 29561) 17-03-17 22:37:07.838 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:37:07.848 -07 000000547 INF: FPGA: Recv ZSGSRD 30365 17-03-17 22:37:07.848 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall 17-03-17 22:37:07.848 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:37:07.848 -07 000000502 INF: FPGA: Recv ZSGSRD 30362 17-03-17 22:37:07.858 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall 17-03-17 22:37:07.858 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:37:07.858 -07 000000576 INF: FPGA: Recv ZSGSRD 30355 17-03-17 22:37:07.868 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:37:07.868 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:37:07.868 -07 000000569 INF: FPGA: Recv ZSGSRD 30359 17-03-17 22:37:07.878 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:37:07.878 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:37:07.878 -07 000000459 INF: FPGA: Recv ZSGSRD 30355 17-03-17 22:37:07.888 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:37:07.888 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:37:07.888 -07 000000475 INF: FPGA: Recv ZSGSRD 30355 17-03-17 22:37:07.898 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:37:07.898 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:37:07.898 -07 000000415 INF: FPGA: Recv ZSGSRD 30359 17-03-17 22:37:07.908 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:37:07.908 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:37:07.908 -07 000000551 INF: FPGA: Recv ZSGSRD 30348 17-03-17 22:37:07.918 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:37:07.918 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:37:07.918 -07 000000486 INF: FPGA: Recv ZSGSRD 30354 17-03-17 22:37:07.928 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:37:07.928 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:37:07.928 -07 000000458 INF: FPGA: Recv ZSGSRD 30358 17-03-17 22:37:07.938 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:37:07.938 -07 000000623 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 22:37:07.938 -07 000000382 INF: FPGA: Recv ZPIEZORD 26367 17-03-17 22:37:07.948 -07 000000623 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:37:07.948 -07 000000623 INF: Z Motor: Piezo is near 36.3 V (nominally 0 to 100 V), expect near 45.1 V, since DAC is at 4.511 V. Piezo Error = -8.8 V. 17-03-17 22:37:07.948 -07 000000623 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.3 um, Read 10 ADC samples: Avg = 30357 (-134.6 uncal um), Error = 0.8 uncal um, Median = 30356 (-134.5 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 30348 (-134.5 uncal um), Max = 30365 (-134.6 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um) 17-03-17 22:37:07.948 -07 000000623 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30357, posNoise = 8, negNoise = 9 17-03-17 22:37:07.948 -07 000000623 INF: Z Motor: After move to -0.135322, error = -0.000022, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 22:37:07.948 -07 000000623 INF: Z Motor: Settle wait time = 1448 ms, measure time = 102 ms (allowed 150 ms), total time = 1550 ms 17-03-17 22:37:07.948 -07 000000623 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms 17-03-17 22:37:07.998 -07 000000623 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1603 ms 17-03-17 22:37:07.998 -07 000000623 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-17 22:37:07.998 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 22:37:07.998 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 22:37:07.998 -07 000000551 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 22:37:07.998 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 22:37:07.998 -07 000000458 INF: Disarm and arm camera sensor 0: ROITrigger start. 17-03-17 22:37:07.998 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 22:37:08.008 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 22:37:08.008 -07 000000458 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start. 17-03-17 22:37:08.008 -07 000000458 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms. 17-03-17 22:37:08.008 -07 000000458 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start. 17-03-17 22:37:08.018 -07 000000458 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms. 17-03-17 22:37:08.018 -07 000000458 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms. 17-03-17 22:37:08.018 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera] 17-03-17 22:37:08.058 -07 000000551 INF: FPGA: Recv @CAMSNAP turning led on 40 17-03-17 22:37:08.258 -07 000000459 INF: FPGA: Recv @CAMSNAP img rdy 240 17-03-17 22:37:08.258 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240 17-03-17 22:37:08.258 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start. 17-03-17 22:37:08.258 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1510640456, 0x0, 559484976) start. 17-03-17 22:37:08.298 -07 000000462 INF: FPGA: Recv @CAMSNAP 282 17-03-17 22:37:08.308 -07 000000480 INF: FPGA: Recv CAMSNAP 17-03-17 22:37:08.308 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 287 ms overall 17-03-17 22:37:08.378 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1510640456, 0x0, 559484976) end. Duration was 116 ms. 17-03-17 22:37:08.378 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-17 22:37:08.378 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms. 17-03-17 22:37:08.378 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms. 17-03-17 22:37:08.408 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 22:37:08.408 -07 000000415 INF: Autofocus start 17-03-17 22:37:08.408 -07 000000415 INF: MeasureProfile start 17-03-17 22:37:08.408 -07 000000480 INF: FPGA: Recv FOCMRRCUR 17-03-17 22:37:08.418 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall 17-03-17 22:37:08.418 -07 000000502 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror] 17-03-17 22:37:08.418 -07 000000415 INF: MeasureProfile done 17-03-17 22:37:08.418 -07 000000415 INF: X=48 Z correction [um]=0.2069503 17-03-17 22:37:08.418 -07 000000415 INF: Autofocus finished 17-03-17 22:37:08.618 -07 000000438 INF: FPGA: Recv FOCMRRIMG 17-03-17 22:37:08.618 -07 000000502 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall 17-03-17 22:37:08.618 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.349609375, Z-position -0.135343159998572. ---------- 17-03-17 22:37:08.618 -07 000000610 INF: Cycle 65 Tile 16 Exposure Settings A 455 G 219 T 219 C 455 17-03-17 22:37:08.628 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28118, sync = True, waitForSettling = True) 17-03-17 22:37:08.628 -07 000000610 INF: Z Motor: Moving to -0.128716 mm, started at -0.135343 mm, distance = 6.63 um 17-03-17 22:37:08.628 -07 000000610 INF: FPGA: Xmit ZDACW 28118\n [Z Motor] 17-03-17 22:37:08.628 -07 000000547 INF: FPGA: Recv ZDACW 17-03-17 22:37:08.638 -07 000000610 INF: FPGA: 'ZDACW 28118' command took 0 ms to send, 0 ms to get response, and 8 ms overall 17-03-17 22:37:08.638 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 22:37:08.638 -07 000000541 INF: FPGA: Recv ZDACR 28118 17-03-17 22:37:08.648 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:37:08.648 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-17 22:37:08.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:37:08.798 -07 000000502 INF: FPGA: Recv ZSGSRD 29325 17-03-17 22:37:08.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 22:37:08.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:37:08.808 -07 000000608 INF: FPGA: Recv ZSGSRD 29324 17-03-17 22:37:08.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:37:08.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:37:08.818 -07 000000475 INF: FPGA: Recv ZSGSRD 29333 17-03-17 22:37:08.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:37:08.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:37:08.828 -07 000000462 INF: FPGA: Recv ZSGSRD 29326 17-03-17 22:37:08.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:37:08.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:37:08.838 -07 000000415 INF: FPGA: Recv ZSGSRD 29333 17-03-17 22:37:08.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:37:08.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:37:08.848 -07 000000627 INF: FPGA: Recv ZSGSRD 29327 17-03-17 22:37:08.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:37:08.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:37:08.858 -07 000000547 INF: FPGA: Recv ZSGSRD 29319 17-03-17 22:37:08.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:37:08.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:37:08.868 -07 000000541 INF: FPGA: Recv ZSGSRD 29331 17-03-17 22:37:08.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:37:08.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:37:08.878 -07 000000438 INF: FPGA: Recv ZSGSRD 29322 17-03-17 22:37:08.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:37:08.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:37:08.888 -07 000000415 INF: FPGA: Recv ZSGSRD 29329 17-03-17 22:37:08.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:37:08.898 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 22:37:08.898 -07 000000502 INF: FPGA: Recv ZPIEZORD 24965 17-03-17 22:37:08.908 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:37:08.908 -07 000000610 INF: Z Motor: Piezo is near 33.3 V (nominally 0 to 100 V), expect near 42.9 V, since DAC is at 4.291 V. Piezo Error = -9.6 V. 17-03-17 22:37:08.908 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.7 um, Read 10 ADC samples: Avg = 29327 (-128.0 uncal um), Error = 0.8 uncal um, Median = 29326 (-127.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 29319 (-127.9 uncal um), Max = 29333 (-128.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um) 17-03-17 22:37:08.908 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29327, posNoise = 6, negNoise = 8 17-03-17 22:37:08.908 -07 000000610 INF: Z Motor: After move to -0.128716, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 22:37:08.908 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms) 17-03-17 22:37:08.908 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 22:37:08.908 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 22:37:08.908 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 22:37:08.908 -07 000000541 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 22:37:08.908 -07 000000415 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-17 22:37:08.908 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-17 22:37:08.908 -07 000000547 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-17 22:37:08.908 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 22:37:08.908 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms. 17-03-17 22:37:08.908 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-17 22:37:08.908 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 22:37:08.908 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-17 22:37:08.918 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms. 17-03-17 22:37:08.918 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-17 22:37:08.918 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms. 17-03-17 22:37:08.918 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-17 22:37:08.928 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms. 17-03-17 22:37:08.928 -07 000000547 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms. 17-03-17 22:37:08.928 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms. 17-03-17 22:37:08.928 -07 000000415 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms. 17-03-17 22:37:08.928 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 455 455 219 219 28295 150\n [Camera] 17-03-17 22:37:09.098 -07 000000459 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 65, FrontChillerTemperature: 4.007176, 17-03-17 22:37:09.128 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-17 22:37:09.578 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 647 17-03-17 22:37:09.578 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 647 17-03-17 22:37:09.578 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 22:37:09.588 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 22:37:09.588 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start. 17-03-17 22:37:09.588 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 647 17-03-17 22:37:09.588 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 647 17-03-17 22:37:09.588 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 22:37:09.588 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 22:37:09.588 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start. 17-03-17 22:37:09.778 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28295 840 17-03-17 22:37:09.928 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning grn on 991 17-03-17 22:37:09.968 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 383 ms. 17-03-17 22:37:09.968 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms. 17-03-17 22:37:09.968 -07 000000475 INF: Camera: CopyActivePixFullImage start. 17-03-17 22:37:09.968 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 382 ms. 17-03-17 22:37:09.968 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms. 17-03-17 22:37:09.968 -07 000000593 INF: Camera: CopyActivePixFullImage start. 17-03-17 22:37:09.968 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 22:37:09.968 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms. 17-03-17 22:37:09.978 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 22:37:09.978 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms. 17-03-17 22:37:10.148 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1209 17-03-17 22:37:10.148 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1209 17-03-17 22:37:10.148 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 22:37:10.148 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 22:37:10.148 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) start. 17-03-17 22:37:10.148 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1209 17-03-17 22:37:10.148 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1209 17-03-17 22:37:10.148 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 22:37:10.148 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 22:37:10.148 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start. 17-03-17 22:37:10.338 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP 1402 17-03-17 22:37:10.338 -07 000000576 INF: FPGA: Recv CAMDBLSNAP 17-03-17 22:37:10.338 -07 000000610 INF: FPGA: 'CAMDBLSNAP 455 455 219 219 28295 150' command took 2 ms to send, 1402 ms to get response, and 1409 ms overall 17-03-17 22:37:10.338 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503 17-03-17 22:37:10.338 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.349609375, Z-Position -0.128726221492559. ------ 17-03-17 22:37:10.338 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 22:37:10.338 -07 000000547 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.13532 mm 17-03-17 22:37:10.338 -07 000000547 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-17 22:37:10.348 -07 000000541 INF: FPGA: Recv FOCMRRCUR 17-03-17 22:37:10.348 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall 17-03-17 22:37:10.348 -07 000000608 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror] 17-03-17 22:37:10.348 -07 000000569 INF: Z Motor: Entering MoveAbsStepped (DAC = 29560, sync = True, waitForSettling = False) 17-03-17 22:37:10.348 -07 000000569 INF: Z Motor: Moving to -0.135317 mm, started at -0.128726 mm, distance = -6.59 um 17-03-17 22:37:10.348 -07 000000462 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True) 17-03-17 22:37:10.348 -07 000000462 INF: Y Motor: Moving to 73.1926 mm, started at 72.3496 mm, delta = 0.8430 mm 17-03-17 22:37:10.358 -07 000000569 INF: FPGA: Xmit ZDACW 29560\n [Z Motor] 17-03-17 22:37:10.358 -07 000000502 INF: FPGA: Recv ZDACW 17-03-17 22:37:10.368 -07 000000569 INF: FPGA: 'ZDACW 29560' command took 0 ms to send, 0 ms to get response, and 17 ms overall 17-03-17 22:37:10.368 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 22:37:10.368 -07 000000480 INF: FPGA: Recv YRDPOS 148173 17-03-17 22:37:10.378 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 27 ms overall 17-03-17 22:37:10.378 -07 000000569 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 22:37:10.378 -07 000000462 INF: Y Motor: Encoder = 148173 = motor step 115760.2 = 72.3501 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 22:37:10.378 -07 000000415 INF: FPGA: Recv ZDACR 29560 17-03-17 22:37:10.378 -07 000000462 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-17 22:37:10.378 -07 000000462 INF: Y Motor: Moving 1348 steps-27 17-03-17 22:37:10.388 -07 000000569 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall 17-03-17 22:37:10.388 -07 000000569 INF: Z Motor: MoveAbsStepped took 37 ms (did NOT wait for settling yet)) 17-03-17 22:37:10.388 -07 000000462 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-17 22:37:10.548 -07 000000541 INF: FPGA: Recv FOCMRRFOC 17-03-17 22:37:10.548 -07 000000608 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall 17-03-17 22:37:10.548 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) end. Duration was 402 ms. 17-03-17 22:37:10.548 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms. 17-03-17 22:37:10.548 -07 000000475 INF: Camera: CopyActivePixFullImage start. 17-03-17 22:37:10.548 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 402 ms. 17-03-17 22:37:10.548 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms. 17-03-17 22:37:10.548 -07 000000486 INF: Camera: CopyActivePixFullImage start. 17-03-17 22:37:10.558 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-17 22:37:10.558 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 9 ms. 17-03-17 22:37:10.558 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms. 17-03-17 22:37:10.558 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms. 17-03-17 22:37:10.758 -07 000000593 INF: FPGA: Recv YMVTILE 17-03-17 22:37:10.758 -07 000000462 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 382 ms overall 17-03-17 22:37:10.798 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 22:37:10.808 -07 000000459 INF: FPGA: Recv YRDPOS 149865 17-03-17 22:37:10.808 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall 17-03-17 22:37:10.808 -07 000000462 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 22:37:10.808 -07 000000462 INF: Y Motor: Position error before settling (table move) = -33 encoder counts (-0.016 mm) 17-03-17 22:37:10.808 -07 000000462 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 383 ms, distance = 0.843 mm, average velocity = 2.201 mm/sec 17-03-17 22:37:11.758 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 22:37:11.758 -07 000000438 INF: FPGA: Recv YRDPOS 149865 17-03-17 22:37:11.768 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:37:11.768 -07 000000462 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 22:37:11.788 -07 000000462 INF: Y Motor: After move to 73.192604, error = -0.016335, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm 17-03-17 22:37:11.788 -07 000000462 INF: Y Motor: Position error after settling (table move) = -33 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm) 17-03-17 22:37:11.788 -07 000000462 INF: Y Motor: Moved to 73.1763 after 1443 ms (table move) 17-03-17 22:37:11.788 -07 000000547 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135317 mm (DAC = 29560) 17-03-17 22:37:11.788 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:37:11.798 -07 000000459 INF: FPGA: Recv ZSGSRD 30354 17-03-17 22:37:11.798 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall 17-03-17 22:37:11.798 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:37:11.798 -07 000000627 INF: FPGA: Recv ZSGSRD 30357 17-03-17 22:37:11.808 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall 17-03-17 22:37:11.808 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:37:11.808 -07 000000458 INF: FPGA: Recv ZSGSRD 30355 17-03-17 22:37:11.818 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:37:11.818 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:37:11.818 -07 000000502 INF: FPGA: Recv ZSGSRD 30351 17-03-17 22:37:11.828 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:37:11.828 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:37:11.828 -07 000000438 INF: FPGA: Recv ZSGSRD 30357 17-03-17 22:37:11.838 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:37:11.838 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:37:11.838 -07 000000459 INF: FPGA: Recv ZSGSRD 30356 17-03-17 22:37:11.848 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:37:11.848 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:37:11.848 -07 000000627 INF: FPGA: Recv ZSGSRD 30358 17-03-17 22:37:11.858 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:37:11.858 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:37:11.858 -07 000000623 INF: FPGA: Recv ZSGSRD 30357 17-03-17 22:37:11.868 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:37:11.868 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:37:11.868 -07 000000415 INF: FPGA: Recv ZSGSRD 30344 17-03-17 22:37:11.878 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:37:11.878 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:37:11.878 -07 000000475 INF: FPGA: Recv ZSGSRD 30348 17-03-17 22:37:11.888 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:37:11.888 -07 000000547 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 22:37:11.888 -07 000000551 INF: FPGA: Recv ZPIEZORD 26345 17-03-17 22:37:11.898 -07 000000547 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:37:11.898 -07 000000547 INF: Z Motor: Piezo is near 36.3 V (nominally 0 to 100 V), expect near 45.1 V, since DAC is at 4.511 V. Piezo Error = -8.8 V. 17-03-17 22:37:11.898 -07 000000547 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.3 um, Read 10 ADC samples: Avg = 30354 (-134.5 uncal um), Error = 0.8 uncal um, Median = 30356 (-134.5 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30344 (-134.5 uncal um), Max = 30358 (-134.6 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 10 (0.1 uncal um) 17-03-17 22:37:11.898 -07 000000547 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30354, posNoise = 4, negNoise = 10 17-03-17 22:37:11.898 -07 000000547 INF: Z Motor: After move to -0.135317, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 22:37:11.898 -07 000000547 INF: Z Motor: Settle wait time = 1446 ms, measure time = 102 ms (allowed 150 ms), total time = 1548 ms 17-03-17 22:37:11.898 -07 000000547 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms 17-03-17 22:37:11.948 -07 000000547 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1602 ms 17-03-17 22:37:11.948 -07 000000547 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-17 22:37:11.948 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 22:37:11.948 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 22:37:11.948 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 22:37:11.948 -07 000000593 INF: Disarm and arm camera sensor 0: ROITrigger start. 17-03-17 22:37:11.948 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 22:37:11.948 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 22:37:11.948 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 22:37:11.948 -07 000000593 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start. 17-03-17 22:37:11.958 -07 000000593 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms. 17-03-17 22:37:11.958 -07 000000593 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start. 17-03-17 22:37:11.968 -07 000000593 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms. 17-03-17 22:37:11.968 -07 000000593 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms. 17-03-17 22:37:11.968 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera] 17-03-17 22:37:11.988 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 22:37:11.988 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 64. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1026, R2=1057, Total=2083. Warn if over 250 bubbles per interval. 17-03-17 22:37:12.008 -07 000000475 INF: FPGA: Recv @CAMSNAP turning led on 40 17-03-17 22:37:12.208 -07 000000547 INF: FPGA: Recv @CAMSNAP img rdy 240 17-03-17 22:37:12.208 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240 17-03-17 22:37:12.208 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start. 17-03-17 22:37:12.208 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1201016592, 0x0, 559484976) start. 17-03-17 22:37:12.248 -07 000000438 INF: FPGA: Recv @CAMSNAP 280 17-03-17 22:37:12.248 -07 000000415 INF: FPGA: Recv CAMSNAP 17-03-17 22:37:12.248 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 284 ms overall 17-03-17 22:37:12.328 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1201016592, 0x0, 559484976) end. Duration was 115 ms. 17-03-17 22:37:12.328 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-17 22:37:12.328 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms. 17-03-17 22:37:12.328 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms. 17-03-17 22:37:12.348 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 22:37:12.348 -07 000000502 INF: Autofocus start 17-03-17 22:37:12.348 -07 000000502 INF: MeasureProfile start 17-03-17 22:37:12.348 -07 000000459 INF: FPGA: Recv FOCMRRCUR 17-03-17 22:37:12.358 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-17 22:37:12.358 -07 000000576 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror] 17-03-17 22:37:12.358 -07 000000502 INF: MeasureProfile done 17-03-17 22:37:12.358 -07 000000502 INF: X=-23 Z correction [um]=-0.1153628 17-03-17 22:37:12.358 -07 000000502 INF: Autofocus finished 17-03-17 22:37:12.558 -07 000000541 INF: FPGA: Recv FOCMRRIMG 17-03-17 22:37:12.558 -07 000000576 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 191 ms to get response, and 202 ms overall 17-03-17 22:37:12.558 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.17626953125, Z-position -0.135323887362147. ---------- 17-03-17 22:37:12.558 -07 000000610 INF: Cycle 65 Tile 17 Exposure Settings A 455 G 219 T 219 C 455 17-03-17 22:37:12.568 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28047, sync = True, waitForSettling = True) 17-03-17 22:37:12.568 -07 000000610 INF: Z Motor: Moving to -0.128391 mm, started at -0.135324 mm, distance = 6.93 um 17-03-17 22:37:12.568 -07 000000610 INF: FPGA: Xmit ZDACW 28047\n [Z Motor] 17-03-17 22:37:12.568 -07 000000623 INF: FPGA: Recv ZDACW 17-03-17 22:37:12.578 -07 000000610 INF: FPGA: 'ZDACW 28047' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:37:12.578 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 22:37:12.578 -07 000000459 INF: FPGA: Recv ZDACR 28047 17-03-17 22:37:12.588 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:37:12.588 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-17 22:37:12.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:37:12.738 -07 000000569 INF: FPGA: Recv ZSGSRD 29279 17-03-17 22:37:12.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 22:37:12.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:37:12.748 -07 000000502 INF: FPGA: Recv ZSGSRD 29275 17-03-17 22:37:12.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:37:12.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:37:12.758 -07 000000627 INF: FPGA: Recv ZSGSRD 29274 17-03-17 22:37:12.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:37:12.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:37:12.768 -07 000000486 INF: FPGA: Recv ZSGSRD 29274 17-03-17 22:37:12.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:37:12.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:37:12.778 -07 000000608 INF: FPGA: Recv ZSGSRD 29276 17-03-17 22:37:12.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:37:12.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:37:12.788 -07 000000551 INF: FPGA: Recv ZSGSRD 29282 17-03-17 22:37:12.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:37:12.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:37:12.798 -07 000000547 INF: FPGA: Recv ZSGSRD 29274 17-03-17 22:37:12.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:37:12.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:37:12.808 -07 000000415 INF: FPGA: Recv ZSGSRD 29280 17-03-17 22:37:12.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall 17-03-17 22:37:12.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:37:12.818 -07 000000480 INF: FPGA: Recv ZSGSRD 29274 17-03-17 22:37:12.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:37:12.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:37:12.828 -07 000000475 INF: FPGA: Recv ZSGSRD 29271 17-03-17 22:37:12.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:37:12.838 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 22:37:12.838 -07 000000608 INF: FPGA: Recv ZPIEZORD 24913 17-03-17 22:37:12.848 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:37:12.848 -07 000000610 INF: Z Motor: Piezo is near 33.2 V (nominally 0 to 100 V), expect near 42.8 V, since DAC is at 4.280 V. Piezo Error = -9.6 V. 17-03-17 22:37:12.848 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.4 um, Read 10 ADC samples: Avg = 29276 (-127.6 uncal um), Error = 0.8 uncal um, Median = 29274 (-127.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29271 (-127.6 uncal um), Max = 29282 (-127.7 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um) 17-03-17 22:37:12.848 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29276, posNoise = 6, negNoise = 5 17-03-17 22:37:12.848 -07 000000610 INF: Z Motor: After move to -0.128391, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 22:37:12.848 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms) 17-03-17 22:37:12.848 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 22:37:12.848 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 22:37:12.848 -07 000000415 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 22:37:12.848 -07 000000459 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 22:37:12.848 -07 000000547 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-17 22:37:12.848 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 22:37:12.848 -07 000000475 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-17 22:37:12.848 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-17 22:37:12.848 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms. 17-03-17 22:37:12.848 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-17 22:37:12.848 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms. 17-03-17 22:37:12.848 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-17 22:37:12.858 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms. 17-03-17 22:37:12.858 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-17 22:37:12.858 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms. 17-03-17 22:37:12.858 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-17 22:37:12.868 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms. 17-03-17 22:37:12.868 -07 000000475 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms. 17-03-17 22:37:12.868 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms. 17-03-17 22:37:12.868 -07 000000547 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms. 17-03-17 22:37:12.868 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 455 455 219 219 28224 150\n [Camera] 17-03-17 22:37:13.068 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-17 22:37:13.528 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 647 17-03-17 22:37:13.528 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 647 17-03-17 22:37:13.528 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 22:37:13.528 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 22:37:13.528 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) start. 17-03-17 22:37:13.528 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 647 17-03-17 22:37:13.528 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 647 17-03-17 22:37:13.528 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 22:37:13.528 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 22:37:13.528 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2620985504, 0x0, 418435064) start. 17-03-17 22:37:13.718 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28224 840 17-03-17 22:37:13.868 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning grn on 990 17-03-17 22:37:13.908 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2620985504, 0x0, 418435064) end. Duration was 376 ms. 17-03-17 22:37:13.908 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms. 17-03-17 22:37:13.908 -07 000000502 INF: Camera: CopyActivePixFullImage start. 17-03-17 22:37:13.908 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) end. Duration was 379 ms. 17-03-17 22:37:13.908 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms. 17-03-17 22:37:13.908 -07 000000480 INF: Camera: CopyActivePixFullImage start. 17-03-17 22:37:13.908 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-17 22:37:13.908 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-17 22:37:13.908 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms. 17-03-17 22:37:13.918 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms. 17-03-17 22:37:14.088 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1209 17-03-17 22:37:14.088 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1209 17-03-17 22:37:14.088 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 22:37:14.088 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 22:37:14.088 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) start. 17-03-17 22:37:14.088 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1209 17-03-17 22:37:14.088 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1209 17-03-17 22:37:14.088 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 22:37:14.218 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 22:37:14.218 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start. 17-03-17 22:37:14.278 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP 1401 17-03-17 22:37:14.278 -07 000000415 INF: FPGA: Recv CAMDBLSNAP 17-03-17 22:37:14.278 -07 000000610 INF: FPGA: 'CAMDBLSNAP 455 455 219 219 28224 150' command took 2 ms to send, 1403 ms to get response, and 1408 ms overall 17-03-17 22:37:14.278 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503 17-03-17 22:37:14.278 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.17626953125, Z-Position -0.128398586673329. ------ 17-03-17 22:37:14.288 -07 000000547 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 22:37:14.288 -07 000000502 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.13470 mm 17-03-17 22:37:14.288 -07 000000502 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-17 22:37:14.288 -07 000000569 INF: FPGA: Recv FOCMRRCUR 17-03-17 22:37:14.288 -07 000000459 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True) 17-03-17 22:37:14.288 -07 000000459 INF: Y Motor: Moving to 74.0226 mm, started at 73.1763 mm, delta = 0.8463 mm 17-03-17 22:37:14.288 -07 000000462 INF: Z Motor: Entering MoveAbsStepped (DAC = 29426, sync = True, waitForSettling = False) 17-03-17 22:37:14.288 -07 000000462 INF: Z Motor: Moving to -0.134704 mm, started at -0.128399 mm, distance = -6.31 um 17-03-17 22:37:14.298 -07 000000547 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:37:14.298 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 22:37:14.298 -07 000000576 INF: FPGA: Recv YRDPOS 149865 17-03-17 22:37:14.308 -07 000000462 INF: FPGA: Xmit ZDACW 29426\n [Z Motor] 17-03-17 22:37:14.308 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall 17-03-17 22:37:14.308 -07 000000459 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 22:37:14.308 -07 000000459 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-17 22:37:14.308 -07 000000459 INF: Y Motor: Moving 1354 steps-33 17-03-17 22:37:14.308 -07 000000569 INF: FPGA: Recv ZDACW 17-03-17 22:37:14.318 -07 000000547 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror] 17-03-17 22:37:14.318 -07 000000462 INF: FPGA: 'ZDACW 29426' command took 0 ms to send, 0 ms to get response, and 25 ms overall 17-03-17 22:37:14.328 -07 000000459 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-17 22:37:14.338 -07 000000462 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 22:37:14.338 -07 000000608 INF: FPGA: Recv ZDACR 29426 17-03-17 22:37:14.348 -07 000000462 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall 17-03-17 22:37:14.348 -07 000000462 INF: Z Motor: MoveAbsStepped took 55 ms (did NOT wait for settling yet)) 17-03-17 22:37:14.488 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) end. Duration was 404 ms. 17-03-17 22:37:14.488 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 404 ms. 17-03-17 22:37:14.488 -07 000000486 INF: Camera: CopyActivePixFullImage start. 17-03-17 22:37:14.498 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms. 17-03-17 22:37:14.498 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms. 17-03-17 22:37:14.518 -07 000000593 INF: FPGA: Recv FOCMRRFOC 17-03-17 22:37:14.518 -07 000000547 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall 17-03-17 22:37:14.538 -07 000000458 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 65, FrontChillerTemperature: 3.977204, 17-03-17 22:37:14.618 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 394 ms. 17-03-17 22:37:14.618 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms. 17-03-17 22:37:14.618 -07 000000541 INF: Camera: CopyActivePixFullImage start. 17-03-17 22:37:14.618 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 22:37:14.628 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 536 ms. 17-03-17 22:37:14.708 -07 000000486 INF: FPGA: Recv YMVTILE 17-03-17 22:37:14.708 -07 000000459 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 396 ms overall 17-03-17 22:37:14.738 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 22:37:14.738 -07 000000480 INF: FPGA: Recv YRDPOS 151569 17-03-17 22:37:14.748 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-17 22:37:14.748 -07 000000459 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 22:37:14.748 -07 000000459 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm) 17-03-17 22:37:14.748 -07 000000459 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 399 ms, distance = 0.846 mm, average velocity = 2.121 mm/sec 17-03-17 22:37:15.698 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 22:37:15.698 -07 000000458 INF: FPGA: Recv YRDPOS 151569 17-03-17 22:37:15.708 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 22:37:15.708 -07 000000459 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 22:37:15.718 -07 000000459 INF: Y Motor: After move to 74.022606, error = -0.014305, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm 17-03-17 22:37:15.718 -07 000000459 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm) 17-03-17 22:37:15.718 -07 000000459 INF: Y Motor: Moved to 74.0083 after 1434 ms (table move) 17-03-17 22:37:15.728 -07 000000502 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134704 mm (DAC = 29426) 17-03-17 22:37:15.728 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:37:15.728 -07 000000458 INF: FPGA: Recv ZSGSRD 30258 17-03-17 22:37:15.738 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall 17-03-17 22:37:15.738 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:37:15.738 -07 000000623 INF: FPGA: Recv ZSGSRD 30262 17-03-17 22:37:15.748 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:37:15.748 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:37:15.748 -07 000000482 INF: FPGA: Recv ZSGSRD 30262 17-03-17 22:37:15.758 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:37:15.758 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:37:15.758 -07 000000576 INF: FPGA: Recv ZSGSRD 30259 17-03-17 22:37:15.768 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:37:15.768 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:37:15.768 -07 000000415 INF: FPGA: Recv ZSGSRD 30256 17-03-17 22:37:15.778 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:37:15.778 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:37:15.778 -07 000000593 INF: FPGA: Recv ZSGSRD 30263 17-03-17 22:37:15.788 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:37:15.788 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:37:15.788 -07 000000459 INF: FPGA: Recv ZSGSRD 30251 17-03-17 22:37:15.798 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:37:15.798 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:37:15.798 -07 000000482 INF: FPGA: Recv ZSGSRD 30251 17-03-17 22:37:15.808 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:37:15.808 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:37:15.808 -07 000000576 INF: FPGA: Recv ZSGSRD 30259 17-03-17 22:37:15.818 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:37:15.818 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:37:15.818 -07 000000462 INF: FPGA: Recv ZSGSRD 30260 17-03-17 22:37:15.828 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:37:15.828 -07 000000502 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 22:37:15.828 -07 000000480 INF: FPGA: Recv ZPIEZORD 26248 17-03-17 22:37:15.838 -07 000000502 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:37:15.838 -07 000000502 INF: Z Motor: Piezo is near 36.1 V (nominally 0 to 100 V), expect near 44.9 V, since DAC is at 4.490 V. Piezo Error = -8.8 V. 17-03-17 22:37:15.838 -07 000000502 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.7 um, Read 10 ADC samples: Avg = 30258 (-133.9 uncal um), Error = 0.8 uncal um, Median = 30259 (-133.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30251 (-133.9 uncal um), Max = 30263 (-133.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um) 17-03-17 22:37:15.838 -07 000000502 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30258, posNoise = 5, negNoise = 7 17-03-17 22:37:15.838 -07 000000502 INF: Z Motor: After move to -0.134704, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 22:37:15.838 -07 000000502 INF: Z Motor: Settle wait time = 1437 ms, measure time = 108 ms (allowed 150 ms), total time = 1545 ms 17-03-17 22:37:15.838 -07 000000502 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms 17-03-17 22:37:15.888 -07 000000502 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1599 ms 17-03-17 22:37:15.888 -07 000000502 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-17 22:37:15.888 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 22:37:15.888 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 22:37:15.888 -07 000000482 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 22:37:15.888 -07 000000415 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 22:37:15.888 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger start. 17-03-17 22:37:15.888 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 22:37:15.888 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 22:37:15.888 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start. 17-03-17 22:37:15.898 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms. 17-03-17 22:37:15.898 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start. 17-03-17 22:37:15.908 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms. 17-03-17 22:37:15.908 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms. 17-03-17 22:37:15.908 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera] 17-03-17 22:37:15.958 -07 000000486 INF: FPGA: Recv @CAMSNAP turning led on 40 17-03-17 22:37:16.148 -07 000000627 INF: FPGA: Recv @CAMSNAP img rdy 240 17-03-17 22:37:16.148 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240 17-03-17 22:37:16.158 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start. 17-03-17 22:37:16.158 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610341080, 0x0, 559484976) start. 17-03-17 22:37:16.188 -07 000000576 INF: FPGA: Recv @CAMSNAP 280 17-03-17 22:37:16.198 -07 000000382 INF: FPGA: Recv CAMSNAP 17-03-17 22:37:16.198 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 285 ms overall 17-03-17 22:37:16.268 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610341080, 0x0, 559484976) end. Duration was 114 ms. 17-03-17 22:37:16.268 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-17 22:37:16.268 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms. 17-03-17 22:37:16.268 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms. 17-03-17 22:37:16.298 -07 000000502 INF: Autofocus start 17-03-17 22:37:16.298 -07 000000502 INF: MeasureProfile start 17-03-17 22:37:16.298 -07 000000547 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 22:37:16.308 -07 000000569 INF: FPGA: Recv FOCMRRCUR 17-03-17 22:37:16.308 -07 000000547 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 5 ms overall 17-03-17 22:37:16.308 -07 000000547 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror] 17-03-17 22:37:16.308 -07 000000502 INF: MeasureProfile done 17-03-17 22:37:16.308 -07 000000502 INF: X=14 Z correction [um]=0.04339712 17-03-17 22:37:16.308 -07 000000502 INF: Autofocus finished 17-03-17 22:37:16.508 -07 000000623 INF: FPGA: Recv FOCMRRIMG 17-03-17 22:37:16.508 -07 000000547 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 202 ms overall 17-03-17 22:37:16.508 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.00830078125, Z-position -0.134707162996538. ---------- 17-03-17 22:37:16.518 -07 000000610 INF: Cycle 65 Tile 18 Exposure Settings A 455 G 219 T 219 C 455 17-03-17 22:37:16.518 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27948, sync = True, waitForSettling = True) 17-03-17 22:37:16.518 -07 000000610 INF: Z Motor: Moving to -0.127938 mm, started at -0.134707 mm, distance = 6.77 um 17-03-17 22:37:16.518 -07 000000610 INF: FPGA: Xmit ZDACW 27948\n [Z Motor] 17-03-17 22:37:16.518 -07 000000551 INF: FPGA: Recv ZDACW 17-03-17 22:37:16.528 -07 000000610 INF: FPGA: 'ZDACW 27948' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-17 22:37:16.528 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 22:37:16.528 -07 000000480 INF: FPGA: Recv ZDACR 27948 17-03-17 22:37:16.538 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:37:16.538 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-17 22:37:16.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:37:16.688 -07 000000608 INF: FPGA: Recv ZSGSRD 29205 17-03-17 22:37:16.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 22:37:16.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:37:16.698 -07 000000458 INF: FPGA: Recv ZSGSRD 29211 17-03-17 22:37:16.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:37:16.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:37:16.708 -07 000000541 INF: FPGA: Recv ZSGSRD 29203 17-03-17 22:37:16.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:37:16.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:37:16.718 -07 000000462 INF: FPGA: Recv ZSGSRD 29198 17-03-17 22:37:16.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:37:16.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:37:16.728 -07 000000438 INF: FPGA: Recv ZSGSRD 29205 17-03-17 22:37:16.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:37:16.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:37:16.738 -07 000000593 INF: FPGA: Recv ZSGSRD 29213 17-03-17 22:37:16.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:37:16.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:37:16.748 -07 000000502 INF: FPGA: Recv ZSGSRD 29202 17-03-17 22:37:16.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:37:16.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:37:16.758 -07 000000569 INF: FPGA: Recv ZSGSRD 29201 17-03-17 22:37:16.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:37:16.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:37:16.768 -07 000000551 INF: FPGA: Recv ZSGSRD 29204 17-03-17 22:37:16.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:37:16.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:37:16.778 -07 000000627 INF: FPGA: Recv ZSGSRD 29204 17-03-17 22:37:16.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:37:16.788 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 22:37:16.788 -07 000000623 INF: FPGA: Recv ZPIEZORD 24889 17-03-17 22:37:16.798 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:37:16.798 -07 000000610 INF: Z Motor: Piezo is near 33.2 V (nominally 0 to 100 V), expect near 42.6 V, since DAC is at 4.265 V. Piezo Error = -9.5 V. 17-03-17 22:37:16.798 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.9 um, Read 10 ADC samples: Avg = 29205 (-127.2 uncal um), Error = 0.8 uncal um, Median = 29204 (-127.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 29198 (-127.1 uncal um), Max = 29213 (-127.2 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um) 17-03-17 22:37:16.798 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29205, posNoise = 8, negNoise = 7 17-03-17 22:37:16.798 -07 000000610 INF: Z Motor: After move to -0.127938, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 22:37:16.798 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms) 17-03-17 22:37:16.798 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 22:37:16.798 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 22:37:16.798 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 22:37:16.798 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-17 22:37:16.798 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 22:37:16.798 -07 000000547 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 22:37:16.798 -07 000000627 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-17 22:37:16.798 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-17 22:37:16.798 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 22:37:16.798 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-17 22:37:16.798 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms. 17-03-17 22:37:16.798 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-17 22:37:16.808 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms. 17-03-17 22:37:16.808 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-17 22:37:16.808 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms. 17-03-17 22:37:16.808 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-17 22:37:16.818 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms. 17-03-17 22:37:16.818 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms. 17-03-17 22:37:16.818 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms. 17-03-17 22:37:16.818 -07 000000627 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms. 17-03-17 22:37:16.818 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 455 455 219 219 28125 150\n [Camera] 17-03-17 22:37:16.988 -07 000000415 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 22:37:16.988 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 64. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1026, R2=1057, Total=2083. Warn if over 250 bubbles per interval. 17-03-17 22:37:17.018 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-17 22:37:17.478 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 647 17-03-17 22:37:17.478 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 647 17-03-17 22:37:17.478 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 22:37:17.478 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 647 17-03-17 22:37:17.478 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 647 17-03-17 22:37:17.478 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 22:37:17.478 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 22:37:17.478 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 1406045800, 0x0, 391868352) start. 17-03-17 22:37:17.488 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 22:37:17.488 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) start. 17-03-17 22:37:17.668 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28125 840 17-03-17 22:37:17.818 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning grn on 990 17-03-17 22:37:17.858 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 1406045800, 0x0, 391868352) end. Duration was 373 ms. 17-03-17 22:37:17.858 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) end. Duration was 371 ms. 17-03-17 22:37:17.858 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms. 17-03-17 22:37:17.858 -07 000000593 INF: Camera: CopyActivePixFullImage start. 17-03-17 22:37:17.858 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 374 ms. 17-03-17 22:37:17.858 -07 000000415 INF: Camera: CopyActivePixFullImage start. 17-03-17 22:37:17.868 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms. 17-03-17 22:37:17.868 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms. 17-03-17 22:37:17.868 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms. 17-03-17 22:37:17.868 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms. 17-03-17 22:37:18.038 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1209 17-03-17 22:37:18.038 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1209 17-03-17 22:37:18.038 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 22:37:18.038 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1209 17-03-17 22:37:18.038 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1209 17-03-17 22:37:18.038 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 22:37:18.158 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 22:37:18.168 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start. 17-03-17 22:37:18.168 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 22:37:18.168 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start. 17-03-17 22:37:18.228 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP 1402 17-03-17 22:37:18.228 -07 000000382 INF: FPGA: Recv CAMDBLSNAP 17-03-17 22:37:18.228 -07 000000610 INF: FPGA: 'CAMDBLSNAP 455 455 219 219 28125 150' command took 2 ms to send, 1406 ms to get response, and 1412 ms overall 17-03-17 22:37:18.228 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503 17-03-17 22:37:18.228 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.00830078125, Z-Position -0.127942467611264. ------ 17-03-17 22:37:18.238 -07 000000547 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 22:37:18.238 -07 000000551 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.13438 mm 17-03-17 22:37:18.238 -07 000000551 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-17 22:37:18.238 -07 000000438 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True) 17-03-17 22:37:18.238 -07 000000576 INF: Z Motor: Entering MoveAbsStepped (DAC = 29355, sync = True, waitForSettling = False) 17-03-17 22:37:18.238 -07 000000576 INF: Z Motor: Moving to -0.134379 mm, started at -0.127942 mm, distance = -6.44 um 17-03-17 22:37:18.238 -07 000000438 INF: Y Motor: Moving to 74.8526 mm, started at 74.0083 mm, delta = 0.8443 mm 17-03-17 22:37:18.238 -07 000000382 INF: FPGA: Recv FOCMRRCUR 17-03-17 22:37:18.248 -07 000000547 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-17 22:37:18.248 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 22:37:18.248 -07 000000482 INF: FPGA: Recv YRDPOS 151570 17-03-17 22:37:18.258 -07 000000576 INF: FPGA: Xmit ZDACW 29355\n [Z Motor] 17-03-17 22:37:18.258 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall 17-03-17 22:37:18.258 -07 000000438 INF: Y Motor: Encoder = 151570 = motor step 118414.1 = 74.0088 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 22:37:18.258 -07 000000541 INF: FPGA: Recv ZDACW 17-03-17 22:37:18.258 -07 000000438 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-17 22:37:18.258 -07 000000438 INF: Y Motor: Moving 1350 steps-29 17-03-17 22:37:18.268 -07 000000576 INF: FPGA: 'ZDACW 29355' command took 0 ms to send, 0 ms to get response, and 23 ms overall 17-03-17 22:37:18.268 -07 000000547 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror] 17-03-17 22:37:18.278 -07 000000438 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-17 22:37:18.288 -07 000000576 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 22:37:18.288 -07 000000475 INF: FPGA: Recv ZDACR 29355 17-03-17 22:37:18.298 -07 000000576 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall 17-03-17 22:37:18.298 -07 000000576 INF: Z Motor: MoveAbsStepped took 54 ms (did NOT wait for settling yet)) 17-03-17 22:37:18.468 -07 000000608 INF: FPGA: Recv FOCMRRFOC 17-03-17 22:37:18.468 -07 000000547 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall 17-03-17 22:37:18.558 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 399 ms. 17-03-17 22:37:18.558 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms. 17-03-17 22:37:18.558 -07 000000458 INF: Camera: CopyActivePixFullImage start. 17-03-17 22:37:18.568 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 398 ms. 17-03-17 22:37:18.568 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms. 17-03-17 22:37:18.568 -07 000000415 INF: Camera: CopyActivePixFullImage start. 17-03-17 22:37:18.568 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-17 22:37:18.568 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 528 ms. 17-03-17 22:37:18.568 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-17 22:37:18.578 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 532 ms. 17-03-17 22:37:18.648 -07 000000576 INF: FPGA: Recv YMVTILE 17-03-17 22:37:18.648 -07 000000438 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 367 ms to get response, and 391 ms overall 17-03-17 22:37:18.678 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 22:37:18.678 -07 000000541 INF: FPGA: Recv YRDPOS 153256 17-03-17 22:37:18.688 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-17 22:37:18.688 -07 000000438 INF: Y Motor: Encoder = 153256 = motor step 119731.3 = 74.8320 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 22:37:18.688 -07 000000438 INF: Y Motor: Position error before settling (table move) = -42 encoder counts (-0.021 mm) 17-03-17 22:37:18.688 -07 000000438 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 391 ms, distance = 0.844 mm, average velocity = 2.159 mm/sec 17-03-17 22:37:19.638 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 22:37:19.638 -07 000000382 INF: FPGA: Recv YRDPOS 153257 17-03-17 22:37:19.648 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 22:37:19.648 -07 000000438 INF: Y Motor: Encoder = 153257 = motor step 119732.0 = 74.8325 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 22:37:19.658 -07 000000438 INF: Y Motor: After move to 74.852608, error = -0.020088, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm 17-03-17 22:37:19.658 -07 000000438 INF: Y Motor: Position error after settling (table move) = -41 encoder counts (-0.020 mm), Delta during settling = 1 counts (0.000 mm) 17-03-17 22:37:19.658 -07 000000438 INF: Y Motor: Moved to 74.8325 after 1420 ms (table move) 17-03-17 22:37:19.668 -07 000000551 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134379 mm (DAC = 29355) 17-03-17 22:37:19.668 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:37:19.668 -07 000000576 INF: FPGA: Recv ZSGSRD 30209 17-03-17 22:37:19.678 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall 17-03-17 22:37:19.678 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:37:19.678 -07 000000486 INF: FPGA: Recv ZSGSRD 30202 17-03-17 22:37:19.688 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:37:19.688 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:37:19.688 -07 000000475 INF: FPGA: Recv ZSGSRD 30201 17-03-17 22:37:19.698 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:37:19.698 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:37:19.698 -07 000000482 INF: FPGA: Recv ZSGSRD 30203 17-03-17 22:37:19.708 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:37:19.708 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:37:19.708 -07 000000459 INF: FPGA: Recv ZSGSRD 30204 17-03-17 22:37:19.718 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:37:19.718 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:37:19.718 -07 000000576 INF: FPGA: Recv ZSGSRD 30209 17-03-17 22:37:19.728 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:37:19.728 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:37:19.728 -07 000000547 INF: FPGA: Recv ZSGSRD 30216 17-03-17 22:37:19.738 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:37:19.738 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:37:19.738 -07 000000475 INF: FPGA: Recv ZSGSRD 30212 17-03-17 22:37:19.748 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:37:19.748 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:37:19.748 -07 000000458 INF: FPGA: Recv ZSGSRD 30208 17-03-17 22:37:19.758 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:37:19.758 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:37:19.758 -07 000000459 INF: FPGA: Recv ZSGSRD 30210 17-03-17 22:37:19.768 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:37:19.768 -07 000000551 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 22:37:19.768 -07 000000593 INF: FPGA: Recv ZPIEZORD 26203 17-03-17 22:37:19.778 -07 000000551 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:37:19.778 -07 000000551 INF: Z Motor: Piezo is near 36.0 V (nominally 0 to 100 V), expect near 44.8 V, since DAC is at 4.479 V. Piezo Error = -8.8 V. 17-03-17 22:37:19.778 -07 000000551 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.4 um, Read 10 ADC samples: Avg = 30207 (-133.6 uncal um), Error = 0.8 uncal um, Median = 30208 (-133.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30201 (-133.6 uncal um), Max = 30216 (-133.6 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um) 17-03-17 22:37:19.778 -07 000000551 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30207, posNoise = 9, negNoise = 6 17-03-17 22:37:19.778 -07 000000551 INF: Z Motor: After move to -0.134379, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 22:37:19.778 -07 000000551 INF: Z Motor: Settle wait time = 1425 ms, measure time = 109 ms (allowed 150 ms), total time = 1534 ms 17-03-17 22:37:19.778 -07 000000551 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms 17-03-17 22:37:19.828 -07 000000551 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1586 ms 17-03-17 22:37:19.828 -07 000000551 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-17 22:37:19.828 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 22:37:19.828 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 22:37:19.828 -07 000000475 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 22:37:19.828 -07 000000459 INF: Disarm and arm camera sensor 0: ROITrigger start. 17-03-17 22:37:19.828 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 22:37:19.828 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 22:37:19.828 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 22:37:19.828 -07 000000459 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start. 17-03-17 22:37:19.838 -07 000000459 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms. 17-03-17 22:37:19.838 -07 000000459 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start. 17-03-17 22:37:19.848 -07 000000459 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms. 17-03-17 22:37:19.848 -07 000000459 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms. 17-03-17 22:37:19.848 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera] 17-03-17 22:37:19.898 -07 000000593 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 65, FrontChillerTemperature: 3.951279, 17-03-17 22:37:19.898 -07 000000475 INF: FPGA: Recv @CAMSNAP turning led on 40 17-03-17 22:37:20.098 -07 000000415 INF: FPGA: Recv @CAMSNAP img rdy 240 17-03-17 22:37:20.098 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240 17-03-17 22:37:20.098 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start. 17-03-17 22:37:20.098 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1422920864, 0x0, 559484976) start. 17-03-17 22:37:20.138 -07 000000438 INF: FPGA: Recv @CAMSNAP 280 17-03-17 22:37:20.138 -07 000000475 INF: FPGA: Recv CAMSNAP 17-03-17 22:37:20.138 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 283 ms to get response, and 284 ms overall 17-03-17 22:37:20.218 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1422920864, 0x0, 559484976) end. Duration was 114 ms. 17-03-17 22:37:20.218 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-17 22:37:20.218 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms. 17-03-17 22:37:20.218 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms. 17-03-17 22:37:20.238 -07 000000438 INF: Autofocus start 17-03-17 22:37:20.238 -07 000000438 INF: MeasureProfile start 17-03-17 22:37:20.248 -07 000000438 INF: MeasureProfile done 17-03-17 22:37:20.248 -07 000000438 INF: X=8 Z correction [um]=0.01453479 17-03-17 22:37:20.248 -07 000000438 INF: Autofocus finished 17-03-17 22:37:20.258 -07 000000547 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 22:37:20.258 -07 000000627 INF: FPGA: Recv FOCMRRCUR 17-03-17 22:37:20.268 -07 000000547 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 26 ms overall 17-03-17 22:37:20.268 -07 000000547 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror] 17-03-17 22:37:20.468 -07 000000475 INF: FPGA: Recv FOCMRRIMG 17-03-17 22:37:20.468 -07 000000547 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall 17-03-17 22:37:20.468 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83251953125, Z-position -0.134379528177308. ---------- 17-03-17 22:37:20.468 -07 000000610 INF: Cycle 65 Tile 19 Exposure Settings A 455 G 219 T 219 C 455 17-03-17 22:37:20.468 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27870, sync = True, waitForSettling = True) 17-03-17 22:37:20.468 -07 000000610 INF: Z Motor: Moving to -0.127581 mm, started at -0.134380 mm, distance = 6.80 um 17-03-17 22:37:20.478 -07 000000610 INF: FPGA: Xmit ZDACW 27870\n [Z Motor] 17-03-17 22:37:20.478 -07 000000623 INF: FPGA: Recv ZDACW 17-03-17 22:37:20.488 -07 000000610 INF: FPGA: 'ZDACW 27870' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 22:37:20.488 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 22:37:20.488 -07 000000502 INF: FPGA: Recv ZDACR 27870 17-03-17 22:37:20.498 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:37:20.498 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-17 22:37:20.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:37:20.648 -07 000000462 INF: FPGA: Recv ZSGSRD 29146 17-03-17 22:37:20.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 22:37:20.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:37:20.658 -07 000000459 INF: FPGA: Recv ZSGSRD 29153 17-03-17 22:37:20.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:37:20.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:37:20.668 -07 000000415 INF: FPGA: Recv ZSGSRD 29152 17-03-17 22:37:20.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:37:20.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:37:20.678 -07 000000623 INF: FPGA: Recv ZSGSRD 29149 17-03-17 22:37:20.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:37:20.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:37:20.688 -07 000000547 INF: FPGA: Recv ZSGSRD 29152 17-03-17 22:37:20.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:37:20.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:37:20.698 -07 000000576 INF: FPGA: Recv ZSGSRD 29148 17-03-17 22:37:20.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:37:20.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:37:20.708 -07 000000480 INF: FPGA: Recv ZSGSRD 29157 17-03-17 22:37:20.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:37:20.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:37:20.718 -07 000000569 INF: FPGA: Recv ZSGSRD 29147 17-03-17 22:37:20.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:37:20.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:37:20.728 -07 000000462 INF: FPGA: Recv ZSGSRD 29148 17-03-17 22:37:20.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall 17-03-17 22:37:20.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 22:37:20.738 -07 000000608 INF: FPGA: Recv ZSGSRD 29155 17-03-17 22:37:20.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:37:20.748 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 22:37:20.748 -07 000000475 INF: FPGA: Recv ZPIEZORD 24828 17-03-17 22:37:20.758 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 22:37:20.758 -07 000000610 INF: Z Motor: Piezo is near 33.0 V (nominally 0 to 100 V), expect near 42.5 V, since DAC is at 4.253 V. Piezo Error = -9.5 V. 17-03-17 22:37:20.758 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.6 um, Read 10 ADC samples: Avg = 29151 (-126.8 uncal um), Error = 0.8 uncal um, Median = 29150 (-126.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29146 (-126.8 uncal um), Max = 29157 (-126.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um) 17-03-17 22:37:20.758 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29151, posNoise = 6, negNoise = 5 17-03-17 22:37:20.758 -07 000000610 INF: Z Motor: After move to -0.127581, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 22:37:20.758 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms) 17-03-17 22:37:20.758 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 22:37:20.758 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 22:37:20.758 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 22:37:20.758 -07 000000547 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 22:37:20.758 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-17 22:37:20.758 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 22:37:20.758 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-17 22:37:20.758 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-17 22:37:20.758 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 22:37:20.758 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-17 22:37:20.758 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms. 17-03-17 22:37:20.758 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-17 22:37:20.758 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms. 17-03-17 22:37:20.758 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-17 22:37:20.758 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms. 17-03-17 22:37:20.758 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-17 22:37:20.768 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms. 17-03-17 22:37:20.768 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 12 ms. 17-03-17 22:37:20.778 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms. 17-03-17 22:37:20.778 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms. 17-03-17 22:37:20.778 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 455 455 219 219 28047 150\n [Camera] 17-03-17 22:37:20.978 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-17 22:37:21.438 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 647 17-03-17 22:37:21.438 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 647 17-03-17 22:37:21.438 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 22:37:21.438 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 647 17-03-17 22:37:21.438 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 647 17-03-17 22:37:21.438 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 22:37:21.438 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 22:37:21.438 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 1442002248, 0x0, 391868352) start. 17-03-17 22:37:21.448 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 22:37:21.448 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start. 17-03-17 22:37:21.628 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28047 843 17-03-17 22:37:21.778 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP turning grn on 990 17-03-17 22:37:21.828 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 382 ms. 17-03-17 22:37:21.828 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms. 17-03-17 22:37:21.828 -07 000000551 INF: Camera: CopyActivePixFullImage start. 17-03-17 22:37:21.828 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms. 17-03-17 22:37:21.838 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 1442002248, 0x0, 391868352) end. Duration was 396 ms. 17-03-17 22:37:21.838 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms. 17-03-17 22:37:21.838 -07 000000627 INF: Camera: CopyActivePixFullImage start. 17-03-17 22:37:21.838 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 403 ms. 17-03-17 22:37:21.838 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-17 22:37:21.838 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms. 17-03-17 22:37:21.988 -07 000000458 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 22:37:21.988 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 64. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1026, R2=1057, Total=2083. Warn if over 250 bubbles per interval. 17-03-17 22:37:21.998 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1209 17-03-17 22:37:21.998 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1209 17-03-17 22:37:21.998 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 22:37:21.998 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1209 17-03-17 22:37:21.998 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1209 17-03-17 22:37:21.998 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 22:37:21.998 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 22:37:21.998 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start. 17-03-17 22:37:21.998 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 22:37:21.998 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) start. 17-03-17 22:37:22.188 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP 1402 17-03-17 22:37:22.188 -07 000000462 INF: FPGA: Recv CAMDBLSNAP 17-03-17 22:37:22.188 -07 000000610 INF: FPGA: 'CAMDBLSNAP 455 455 219 219 28047 150' command took 2 ms to send, 1404 ms to get response, and 1409 ms overall 17-03-17 22:37:22.398 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) end. Duration was 398 ms. 17-03-17 22:37:22.398 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms. 17-03-17 22:37:22.398 -07 000000569 INF: Camera: CopyActivePixFullImage start. 17-03-17 22:37:22.408 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 403 ms. 17-03-17 22:37:22.408 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms. 17-03-17 22:37:22.408 -07 000000415 INF: Camera: CopyActivePixFullImage start. 17-03-17 22:37:22.408 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 22:37:22.408 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms. 17-03-17 22:37:22.408 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms. 17-03-17 22:37:22.408 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start. 17-03-17 22:37:22.418 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms. 17-03-17 22:37:22.448 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 42 ms. 17-03-17 22:37:22.448 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start. 17-03-17 22:37:22.498 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 42 ms. 17-03-17 22:37:22.508 -07 000000610 INF: Enabling Skipping AutoFocus in the next 3 cycles. 17-03-17 22:37:22.508 -07 000000610 INF: Imaging Cycle 65: ScanTilesCommand Cycle 65 time end. Duration was 160211 ms. 17-03-17 22:37:22.508 -07 000000610 INF: =================== Cycle #65 =================== 17-03-17 22:37:22.508 -07 000000610 INF: =================== =================== 17-03-17 22:37:22.508 -07 000000593 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED] 17-03-17 22:37:22.518 -07 000000458 INF: FPGA: Recv EXLED1ADCR 28 17-03-17 22:37:22.518 -07 000000593 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 3 ms overall 17-03-17 22:37:22.518 -07 000000593 INF: GreenLED: Using Green data: Photodiode ADC 28 --> 0.0 mW (old method), or 2.1 mW (new method). Difference = 2.1 mW 17-03-17 22:37:22.518 -07 000000593 INF: Predictive Diagnostic Log Cycle Entry Metrics: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 65, FrontChillerTemperature: 3.951279, FrontChillerHeatSinkTemperature: 0.360268, AmbientTemperature: 18.94012, FlowCellCompartmentTemperature: 21.99399, FlowCellTargetTemperature: 22, FlowCellHeatSinkTemperature: 18.66922, GreenLEDSensorTemperature: 26.57205, PhotodiodePowerAdcGreen: 28, PhotodiodePowerMwGreen: 2.10942 17-03-17 22:37:22.668 -07 000000610 INF: Y-Drift Offset assigned 0.002126916.