17-03-17 22:37:22.718 -07 000000610 INF: =================== Cycle #66 ===================
17-03-17 22:37:22.718 -07 000000610 INF: Y Motor: Entering MoveAbsStepped (target = 120609 steps, sync = True, waitForSettling = True)
17-03-17 22:37:22.718 -07 000000610 INF: Y Motor: Moving to 75.3806 mm, started at 74.8325 mm, delta = 0.5481 mm
17-03-17 22:37:22.718 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:37:22.728 -07 000000482 INF: FPGA: Recv YRDPOS 153257
17-03-17 22:37:22.728 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 5 ms to get response, and 5 ms overall
17-03-17 22:37:22.728 -07 000000610 INF: Y Motor: Encoder = 153257 = motor step 119732.0 = 74.8325 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:37:22.728 -07 000000610 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = 0.5280 mm (844.8 steps). UsingTableMove = False
17-03-17 22:37:22.728 -07 000000610 INF: Y Motor: Moving to 154379 encoder counts
17-03-17 22:37:22.728 -07 000000610 INF: FPGA: Xmit YMVTO 154379\n [Y Motor]
17-03-17 22:37:22.848 -07 000000462 INF: FPGA: Recv YMVTO 154378 871
17-03-17 22:37:22.848 -07 000000610 INF: FPGA: 'YMVTO 154379' command took 0 ms to send, 112 ms to get response, and 116 ms overall
17-03-17 22:37:22.848 -07 000000610 INF: Y Motor: Position error before settling = -1 encoder counts (0.000 mm)
17-03-17 22:37:22.848 -07 000000610 INF: Y Motor: To move from 74.833 to 75.381 (0.548 mm) should take 877 steps, but required 871 steps (0.544 mm). Slippage = -0.004 mm (-0.01%).
17-03-17 22:37:22.848 -07 000000610 INF: Y Motor: FPGA move command 'YMVTO 154379' took 116 ms, distance = 0.548 mm, average velocity = 4.725 mm/sec
17-03-17 22:37:25.268 -07 000000482 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 66, FrontChillerTemperature: 3.981281,
17-03-17 22:37:25.848 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:37:25.848 -07 000000547 INF: FPGA: Recv YRDPOS 154380
17-03-17 22:37:25.858 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:37:25.858 -07 000000610 INF: Y Motor: Encoder = 154380 = motor step 120609.4 = 75.3809 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:37:25.878 -07 000000610 INF: Y Motor: After move to 75.380580, error = 0.000279, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:37:25.878 -07 000000610 INF: Y Motor: Position error after settling = 1 encoder counts (0.000 mm), Delta during settling = 2 counts (0.001 mm)
17-03-17 22:37:25.878 -07 000000610 INF: Y Motor: Moved to 75.3809 after 3150 ms
17-03-17 22:37:25.878 -07 000000610 INF: =================== Cycle #66, Flow Cell Temp 60° ===================
17-03-17 22:37:25.878 -07 000000610 INF: =================== Cycle #66, Flow Cell Temp 60°, FC temperature to 60° ===================
17-03-17 22:37:25.878 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 60000000\n [FlowCellTempControl]
17-03-17 22:37:25.888 -07 000000547 INF: FPGA: Recv TEC2TEMP 
17-03-17 22:37:25.888 -07 000000610 INF: FPGA: 'TEC2TEMP 0 60000000' command took 1 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:37:25.888 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 22:37:25.888 -07 000000608 INF: FPGA: Recv TEC2EN 
17-03-17 22:37:25.898 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:37:25.898 -07 000000610 INF: =================== Cycle #66, Flow Cell Temp 60° ===================
17-03-17 22:37:25.898 -07 000000610 INF: =================== Cycle #66 ===================
17-03-17 22:37:25.898 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 22:37:25.898 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 22:37:25.928 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-17 22:37:25.928 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 24 to 3. Moving 3 positions.
17-03-17 22:37:25.928 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 22:37:26.228 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 22:37:26.248 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-17 22:37:26.248 -07 000000610 INF: ReagentValve: Move+ from 24 to 3 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-17 22:37:26.298 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 22:37:26.318 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 22:37:26.318 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 22:37:26.418 -07 000000610 INF: =================== Cycle #66, Pumping Reagent PR2 (3) ===================
17-03-17 22:37:26.418 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-17 22:37:26.418 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:37:26.448 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 22:37:26.448 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 22:37:26.448 -07 000000610 INF: =================== Cycle #66, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 22:37:26.578 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-17 22:37:26.618 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:37:26.988 -07 000000486 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:37:26.988 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 65. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1026, R2=1057, Total=2083. Warn if over 250 bubbles per interval.
17-03-17 22:37:29.748 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:37:29.778 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:37:30.198 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:37:30.228 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:37:30.638 -07 000000438 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 66, FrontChillerTemperature: 3.973092,
17-03-17 22:37:30.648 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:37:30.678 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:37:30.678 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-17 22:37:30.678 -07 000000610 INF: =================== Cycle #66, Pumping Reagent PR2 (3) ===================
17-03-17 22:37:30.808 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:37:30.838 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 22:37:30.838 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 22:37:30.968 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:37:30.998 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 22:37:30.998 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 22:37:30.998 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 22:37:31.128 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 22:37:31.158 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:37:31.588 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:37:31.618 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:37:31.618 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 22:37:31.618 -07 000000610 INF: =================== Cycle #66 ===================
17-03-17 22:37:31.988 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 10 R1 14
17-03-17 22:37:31.988 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 65. Bubbles during last 5000 ms interval: R1=14, R2=10, Total=24. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1040, R2=1067, Total=2107. Warn if over 250 bubbles per interval.
17-03-17 22:37:32.838 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 22:37:32.838 -07 000000610 INF: ReagentValve: Go to position 4 - PumpToFlowcell start
17-03-17 22:37:32.838 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 22:37:32.858 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 22:37:32.858 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 3 to 4. Moving 1 positions.
17-03-17 22:37:32.858 -07 000000610 INF: ReagentValve: Xmit +04\r
17-03-17 22:37:32.998 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 22:37:33.018 -07 000000610 INF: ReagentValve: Recv 00CD\r
17-03-17 22:37:33.018 -07 000000610 INF: ReagentValve: Move+ from 3 to 4 took 205 steps, expected 204. Error = 1 steps (0.5%)
17-03-17 22:37:33.068 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 22:37:33.088 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-17 22:37:33.088 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 22:37:33.188 -07 000000610 INF: =================== Cycle #66, Pumping Reagent CMS (4) ===================
17-03-17 22:37:33.188 -07 000000610 INF: LanePump: Pumping from 4, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 22:37:33.188 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:37:33.218 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 22:37:33.218 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 22:37:33.218 -07 000000610 INF: =================== Cycle #66, Pumping Reagent CMS (4), Aspirating port InputPort ===================
17-03-17 22:37:33.348 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 22:37:33.388 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:37:34.828 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:37:34.858 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:37:35.278 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:37:35.308 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:37:35.308 -07 000000610 INF: LanePump: Waited 1920 ms for pump motion to complete
17-03-17 22:37:35.308 -07 000000610 INF: =================== Cycle #66, Pumping Reagent CMS (4) ===================
17-03-17 22:37:35.438 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:37:35.468 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 22:37:35.468 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 22:37:35.598 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:37:35.628 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 22:37:35.628 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 22:37:35.628 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 22:37:35.758 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 22:37:35.788 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:37:36.008 -07 000000482 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 66, FrontChillerTemperature: 3.971733,
17-03-17 22:37:36.218 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:37:36.248 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:37:36.248 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 22:37:36.248 -07 000000610 INF: =================== Cycle #66 ===================
17-03-17 22:37:36.988 -07 000000475 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:37:36.988 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 65. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1040, R2=1067, Total=2107. Warn if over 250 bubbles per interval.
17-03-17 22:37:37.468 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 22:37:37.468 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 22:37:37.468 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 22:37:37.488 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-17 22:37:37.488 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 4 to 3. Moving 1 positions.
17-03-17 22:37:37.488 -07 000000610 INF: ReagentValve: Xmit -03\r
17-03-17 22:37:37.638 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 22:37:37.658 -07 000000610 INF: ReagentValve: Recv 00E1\r
17-03-17 22:37:37.658 -07 000000610 INF: ReagentValve: Move- from 4 to 3 took 225 steps, expected 204. Error = 21 steps (10.3%)
17-03-17 22:37:37.708 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 22:37:37.728 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 22:37:37.728 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 22:37:37.828 -07 000000610 INF: =================== Cycle #66, Pumping Reagent PR2 (3) ===================
17-03-17 22:37:37.828 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 22:37:37.828 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:37:37.858 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 22:37:37.858 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 22:37:37.858 -07 000000610 INF: =================== Cycle #66, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 22:37:37.988 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 22:37:38.028 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:37:38.898 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:37:38.928 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:37:38.928 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-17 22:37:38.928 -07 000000610 INF: =================== Cycle #66, Pumping Reagent PR2 (3) ===================
17-03-17 22:37:39.058 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:37:39.088 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 22:37:39.088 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 22:37:39.218 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:37:39.248 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 22:37:39.248 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 22:37:39.248 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 22:37:39.378 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 22:37:39.408 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:37:39.838 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:37:39.868 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:37:39.868 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 22:37:39.868 -07 000000610 INF: =================== Cycle #66 ===================
17-03-17 22:37:39.868 -07 000000551 INF: WaitCommand(10000) start
17-03-17 22:37:39.868 -07 000000541 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 22:37:39.868 -07 000000541 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 22:37:41.088 -07 000000541 INF: AsyncDelayTimer waited 1215ms
17-03-17 22:37:41.088 -07 000000541 INF: LanePump: Xmit /1?\r
17-03-17 22:37:41.118 -07 000000541 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 22:37:41.118 -07 000000541 INF: LanePump: Current Position of Pump is: 1110
17-03-17 22:37:41.248 -07 000000541 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 22:37:41.288 -07 000000541 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:37:41.378 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 66, FrontChillerTemperature: 3.994908,
17-03-17 22:37:41.988 -07 000000547 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:37:41.988 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 65. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1040, R2=1067, Total=2107. Warn if over 250 bubbles per interval.
17-03-17 22:37:42.818 -07 000000541 INF: LanePump: Xmit /1Q\r
17-03-17 22:37:42.848 -07 000000541 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:37:43.268 -07 000000541 INF: LanePump: Xmit /1Q\r
17-03-17 22:37:43.298 -07 000000541 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:37:43.298 -07 000000541 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-17 22:37:43.298 -07 000000541 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 22:37:43.298 -07 000000541 INF: ===================  ===================
17-03-17 22:37:46.748 -07 000000593 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 66, FrontChillerTemperature: 4.026244,
17-03-17 22:37:46.988 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:37:46.988 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 65. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1040, R2=1067, Total=2107. Warn if over 250 bubbles per interval.
17-03-17 22:37:49.878 -07 000000551 INF: WaitCommand(10000) end
17-03-17 22:37:49.878 -07 000000610 INF: =================== Cycle #66, Pumping Reagent PR2 (3) ===================
17-03-17 22:37:49.878 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 250 µL, calling command Pumping to Flow Cell #1
17-03-17 22:37:49.878 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:37:49.918 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 22:37:49.918 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 22:37:49.918 -07 000000610 INF: =================== Cycle #66, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 22:37:50.048 -07 000000610 INF: LanePump: Xmit /1V400IP1500R\r
17-03-17 22:37:50.088 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:37:51.988 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:37:51.988 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 65. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1040, R2=1067, Total=2107. Warn if over 250 bubbles per interval.
17-03-17 22:37:52.118 -07 000000608 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 66, FrontChillerTemperature: 4.016692,
17-03-17 22:37:56.218 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:37:56.248 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:37:56.668 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:37:56.698 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:37:56.988 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:37:56.988 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 65. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1040, R2=1067, Total=2107. Warn if over 250 bubbles per interval.
17-03-17 22:37:57.118 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:37:57.148 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:37:57.488 -07 000000458 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 66, FrontChillerTemperature: 4.019446,
17-03-17 22:37:57.568 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:37:57.598 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:37:58.018 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:37:58.048 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:37:58.048 -07 000000610 INF: LanePump: Waited 7959 ms for pump motion to complete
17-03-17 22:37:58.048 -07 000000610 INF: =================== Cycle #66, Pumping Reagent PR2 (3) ===================
17-03-17 22:37:58.178 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:37:58.208 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 22:37:58.208 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 22:37:58.338 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:37:58.368 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 22:37:58.368 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 22:37:58.368 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 22:37:58.498 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 22:37:58.528 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:37:58.958 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:37:58.988 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:37:58.988 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 22:37:58.988 -07 000000610 INF: =================== Cycle #66 ===================
17-03-17 22:38:00.208 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 22:38:00.208 -07 000000610 INF: ReagentValve: Go to position 1 - PumpToFlowcell start
17-03-17 22:38:00.208 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 22:38:00.228 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 22:38:00.228 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 1. Moving 2 positions.
17-03-17 22:38:00.228 -07 000000610 INF: ReagentValve: Xmit -01\r
17-03-17 22:38:00.438 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 22:38:00.458 -07 000000610 INF: ReagentValve: Recv 0198\r
17-03-17 22:38:00.458 -07 000000610 INF: ReagentValve: Move- from 3 to 1 took 408 steps, expected 408. Error = 0 steps (0.0%)
17-03-17 22:38:00.508 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 22:38:00.528 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-17 22:38:00.528 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 22:38:00.628 -07 000000610 INF: =================== Cycle #66, Pumping Reagent IMT (1) ===================
17-03-17 22:38:00.628 -07 000000610 INF: LanePump: Pumping from 1, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 22:38:00.628 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:38:00.658 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 22:38:00.658 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 22:38:00.658 -07 000000610 INF: =================== Cycle #66, Pumping Reagent IMT (1), Aspirating port InputPort ===================
17-03-17 22:38:00.788 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 22:38:00.828 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:38:01.988 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:38:01.988 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 65. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1040, R2=1067, Total=2107. Warn if over 250 bubbles per interval.
17-03-17 22:38:02.268 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:38:02.298 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:38:02.718 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:38:02.748 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:38:02.748 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-17 22:38:02.748 -07 000000610 INF: =================== Cycle #66, Pumping Reagent IMT (1) ===================
17-03-17 22:38:02.858 -07 000000482 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 66, FrontChillerTemperature: 4.012614,
17-03-17 22:38:02.878 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:38:02.908 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 22:38:02.908 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 22:38:03.038 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:38:03.068 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 22:38:03.068 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 22:38:03.068 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 22:38:03.198 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 22:38:03.228 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:38:03.658 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:38:03.688 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:38:03.688 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 22:38:03.688 -07 000000610 INF: =================== Cycle #66 ===================
17-03-17 22:38:04.908 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 22:38:04.908 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 22:38:04.908 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 22:38:04.928 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-17 22:38:04.928 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 1 to 3. Moving 2 positions.
17-03-17 22:38:04.928 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 22:38:05.158 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 22:38:05.178 -07 000000610 INF: ReagentValve: Recv 01AC\r
17-03-17 22:38:05.178 -07 000000610 INF: ReagentValve: Move+ from 1 to 3 took 428 steps, expected 408. Error = 20 steps (4.9%)
17-03-17 22:38:05.228 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 22:38:05.248 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 22:38:05.248 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 22:38:05.348 -07 000000610 INF: =================== Cycle #66, Pumping Reagent PR2 (3) ===================
17-03-17 22:38:05.348 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 22:38:05.348 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:38:05.378 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 22:38:05.378 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 22:38:05.378 -07 000000610 INF: =================== Cycle #66, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 22:38:05.508 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 22:38:05.548 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:38:06.418 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:38:06.448 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:38:06.448 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-17 22:38:06.448 -07 000000610 INF: =================== Cycle #66, Pumping Reagent PR2 (3) ===================
17-03-17 22:38:06.578 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:38:06.608 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 22:38:06.608 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 22:38:06.738 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:38:06.768 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 22:38:06.768 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 22:38:06.768 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 22:38:06.898 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 22:38:06.928 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:38:06.988 -07 000000623 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:38:06.988 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 65. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1040, R2=1067, Total=2107. Warn if over 250 bubbles per interval.
17-03-17 22:38:07.358 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:38:07.388 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:38:07.388 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 22:38:07.388 -07 000000610 INF: =================== Cycle #66 ===================
17-03-17 22:38:07.388 -07 000000610 INF: =================== Cycle #66, Flow Cell Temp 65° ===================
17-03-17 22:38:07.388 -07 000000610 INF: =================== Cycle #66, Flow Cell Temp 65°, FC temperature to 65° ===================
17-03-17 22:38:07.388 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 65000000\n [FlowCellTempControl]
17-03-17 22:38:07.388 -07 000000623 INF: FPGA: Recv TEC2TEMP 
17-03-17 22:38:07.398 -07 000000610 INF: FPGA: 'TEC2TEMP 0 65000000' command took 1 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:38:07.398 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 22:38:07.398 -07 000000458 INF: FPGA: Recv TEC2EN 
17-03-17 22:38:07.408 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:38:07.408 -07 000000610 INF: =================== Cycle #66, Flow Cell Temp 65° ===================
17-03-17 22:38:07.408 -07 000000610 INF: =================== Cycle #66 ===================
17-03-17 22:38:07.408 -07 000000610 INF: WaitCommand(30000) start
17-03-17 22:38:08.228 -07 000000551 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 66, FrontChillerTemperature: 4.012614,
17-03-17 22:38:11.988 -07 000000623 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:38:11.988 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 65. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1040, R2=1067, Total=2107. Warn if over 250 bubbles per interval.
17-03-17 22:38:13.598 -07 000000438 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 66, FrontChillerTemperature: 3.994908,
17-03-17 22:38:16.988 -07 000000547 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:38:16.988 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 65. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1040, R2=1067, Total=2107. Warn if over 250 bubbles per interval.
17-03-17 22:38:18.968 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 66, FrontChillerTemperature: 3.999021,
17-03-17 22:38:21.988 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:38:21.988 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 65. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1040, R2=1067, Total=2107. Warn if over 250 bubbles per interval.
17-03-17 22:38:24.338 -07 000000482 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 66, FrontChillerTemperature: 4.030322,
17-03-17 22:38:26.988 -07 000000593 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:38:26.988 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 65. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1040, R2=1067, Total=2107. Warn if over 250 bubbles per interval.
17-03-17 22:38:29.708 -07 000000475 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 66, FrontChillerTemperature: 4.031682,
17-03-17 22:38:31.988 -07 000000415 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:38:31.988 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 65. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1040, R2=1067, Total=2107. Warn if over 250 bubbles per interval.
17-03-17 22:38:35.078 -07 000000627 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 66, FrontChillerTemperature: 4.027603,
17-03-17 22:38:36.988 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:38:36.988 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 65. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1040, R2=1067, Total=2107. Warn if over 250 bubbles per interval.
17-03-17 22:38:37.418 -07 000000610 INF: WaitCommand(30000) end
17-03-17 22:38:37.418 -07 000000610 INF: =================== Cycle #66, Pumping Reagent PR2 (3) ===================
17-03-17 22:38:37.418 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 5 µL, calling command Pumping to Flow Cell #1
17-03-17 22:38:37.518 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:38:37.548 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 22:38:37.548 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 22:38:37.548 -07 000000610 INF: =================== Cycle #66, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 22:38:37.678 -07 000000610 INF: LanePump: Xmit /1V400IP30R\r
17-03-17 22:38:37.718 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:38:38.258 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:38:38.288 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:38:38.288 -07 000000610 INF: LanePump: Waited 569 ms for pump motion to complete
17-03-17 22:38:38.288 -07 000000610 INF: =================== Cycle #66, Pumping Reagent PR2 (3) ===================
17-03-17 22:38:38.418 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:38:38.448 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 22:38:38.448 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-17 22:38:38.578 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:38:38.608 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 22:38:38.608 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-17 22:38:38.608 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 22:38:38.738 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 22:38:38.768 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:38:39.198 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:38:39.228 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:38:39.228 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 22:38:39.228 -07 000000610 INF: =================== Cycle #66 ===================
17-03-17 22:38:39.228 -07 000000502 INF: WaitCommand(30000) start
17-03-17 22:38:39.228 -07 000000486 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 22:38:39.228 -07 000000486 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 22:38:40.448 -07 000000486 INF: AsyncDelayTimer waited 1215ms
17-03-17 22:38:40.448 -07 000000486 INF: LanePump: Xmit /1?\r
17-03-17 22:38:40.448 -07 000000475 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 66, FrontChillerTemperature: 4.023489,
17-03-17 22:38:40.478 -07 000000486 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 22:38:40.478 -07 000000486 INF: LanePump: Current Position of Pump is: 1920
17-03-17 22:38:40.608 -07 000000486 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 22:38:40.648 -07 000000486 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:38:41.988 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:38:41.988 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 65. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1040, R2=1067, Total=2107. Warn if over 250 bubbles per interval.
17-03-17 22:38:42.988 -07 000000486 INF: LanePump: Xmit /1Q\r
17-03-17 22:38:43.018 -07 000000486 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:38:43.438 -07 000000486 INF: LanePump: Xmit /1Q\r
17-03-17 22:38:43.468 -07 000000486 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:38:43.468 -07 000000486 INF: LanePump: Waited 2819 ms for pump motion to complete
17-03-17 22:38:43.468 -07 000000486 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 22:38:43.468 -07 000000486 INF: ===================  ===================
17-03-17 22:38:45.818 -07 000000458 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 66, FrontChillerTemperature: 3.973092,
17-03-17 22:38:46.988 -07 000000593 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:38:46.988 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 65. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1040, R2=1067, Total=2107. Warn if over 250 bubbles per interval.
17-03-17 22:38:51.188 -07 000000482 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 66, FrontChillerTemperature: 3.989471,
17-03-17 22:38:51.988 -07 000000593 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:38:51.988 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 65. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1040, R2=1067, Total=2107. Warn if over 250 bubbles per interval.
17-03-17 22:38:56.568 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 66, FrontChillerTemperature: 4.012614,
17-03-17 22:38:56.988 -07 000000541 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:38:56.988 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 65. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1040, R2=1067, Total=2107. Warn if over 250 bubbles per interval.
17-03-17 22:39:01.938 -07 000000438 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 66, FrontChillerTemperature: 3.981281,
17-03-17 22:39:01.988 -07 000000623 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:39:01.998 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 65. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1040, R2=1067, Total=2107. Warn if over 250 bubbles per interval.
17-03-17 22:39:06.998 -07 000000486 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:39:06.998 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 65. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1040, R2=1067, Total=2107. Warn if over 250 bubbles per interval.
17-03-17 22:39:07.298 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 66, FrontChillerTemperature: 4.004458,
17-03-17 22:39:09.238 -07 000000502 INF: WaitCommand(30000) end
17-03-17 22:39:09.238 -07 000000610 INF: =================== Cycle #66, Flow Cell Temp 22° ===================
17-03-17 22:39:09.238 -07 000000610 INF: =================== Cycle #66, Flow Cell Temp 22°, FC temperature to 22° ===================
17-03-17 22:39:09.238 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 22000000\n [FlowCellTempControl]
17-03-17 22:39:09.248 -07 000000608 INF: FPGA: Recv TEC2TEMP 
17-03-17 22:39:09.258 -07 000000610 INF: FPGA: 'TEC2TEMP 0 22000000' command took 1 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 22:39:09.258 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 22:39:09.258 -07 000000486 INF: FPGA: Recv TEC2EN 
17-03-17 22:39:09.268 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:39:09.268 -07 000000610 INF: =================== Cycle #66, Flow Cell Temp 22° ===================
17-03-17 22:39:09.268 -07 000000610 INF: =================== Cycle #66 ===================
17-03-17 22:39:09.268 -07 000000610 INF: =================== Cycle #66, Pumping Reagent PR2 (3) ===================
17-03-17 22:39:09.268 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-17 22:39:09.268 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:39:09.298 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 22:39:09.298 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 22:39:09.298 -07 000000610 INF: =================== Cycle #66, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 22:39:09.428 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-17 22:39:09.468 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:39:11.998 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 2 R1 1
17-03-17 22:39:11.998 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 65. Bubbles during last 5000 ms interval: R1=1, R2=2, Total=3. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1041, R2=1069, Total=2110. Warn if over 250 bubbles per interval.
17-03-17 22:39:12.598 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:39:12.628 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:39:12.678 -07 000000541 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 66, FrontChillerTemperature: 4.012614,
17-03-17 22:39:13.048 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:39:13.078 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:39:13.498 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:39:13.528 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:39:13.528 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-17 22:39:13.528 -07 000000610 INF: =================== Cycle #66, Pumping Reagent PR2 (3) ===================
17-03-17 22:39:13.658 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:39:13.688 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 22:39:13.688 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 22:39:13.818 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:39:13.848 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 22:39:13.848 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 22:39:13.848 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 22:39:13.978 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 22:39:14.008 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:39:14.438 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:39:14.468 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:39:14.468 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 22:39:14.468 -07 000000610 INF: =================== Cycle #66 ===================
17-03-17 22:39:15.688 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 22:39:15.688 -07 000000610 INF: ReagentValve: Go to position 2 - PumpToFlowcell start
17-03-17 22:39:15.688 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 22:39:15.708 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 22:39:15.708 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 2. Moving 1 positions.
17-03-17 22:39:15.708 -07 000000610 INF: ReagentValve: Xmit -02\r
17-03-17 22:39:15.858 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 22:39:15.878 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-17 22:39:15.878 -07 000000610 INF: ReagentValve: Move- from 3 to 2 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-17 22:39:15.928 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 22:39:15.948 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-17 22:39:15.948 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 22:39:16.048 -07 000000610 INF: =================== Cycle #66, Pumping Reagent USM (2) ===================
17-03-17 22:39:16.048 -07 000000610 INF: LanePump: Pumping from 2, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 22:39:16.048 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:39:16.078 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 22:39:16.078 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 22:39:16.078 -07 000000610 INF: =================== Cycle #66, Pumping Reagent USM (2), Aspirating port InputPort ===================
17-03-17 22:39:16.208 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 22:39:16.248 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:39:16.988 -07 000000458 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:39:16.988 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 65. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1041, R2=1069, Total=2110. Warn if over 250 bubbles per interval.
17-03-17 22:39:17.688 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:39:17.718 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:39:18.038 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 66, FrontChillerTemperature: 4.037119,
17-03-17 22:39:18.138 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:39:18.168 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:39:18.168 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-17 22:39:18.168 -07 000000610 INF: =================== Cycle #66, Pumping Reagent USM (2) ===================
17-03-17 22:39:18.298 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:39:18.328 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 22:39:18.328 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 22:39:18.458 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:39:18.488 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 22:39:18.488 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 22:39:18.488 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 22:39:18.618 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 22:39:18.648 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:39:19.078 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:39:19.108 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:39:19.108 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 22:39:19.108 -07 000000610 INF: =================== Cycle #66 ===================
17-03-17 22:39:20.328 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 22:39:20.328 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 22:39:20.328 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 22:39:20.348 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-17 22:39:20.348 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 2 to 3. Moving 1 positions.
17-03-17 22:39:20.348 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 22:39:20.498 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 22:39:20.518 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-17 22:39:20.518 -07 000000610 INF: ReagentValve: Move+ from 2 to 3 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-17 22:39:20.568 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 22:39:20.588 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 22:39:20.588 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 22:39:20.688 -07 000000610 INF: =================== Cycle #66, Pumping Reagent PR2 (3) ===================
17-03-17 22:39:20.688 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 22:39:20.688 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:39:20.718 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 22:39:20.718 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 22:39:20.718 -07 000000610 INF: =================== Cycle #66, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 22:39:20.848 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 22:39:20.888 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:39:21.758 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:39:21.788 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:39:21.788 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-17 22:39:21.788 -07 000000610 INF: =================== Cycle #66, Pumping Reagent PR2 (3) ===================
17-03-17 22:39:21.918 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:39:21.948 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 22:39:21.948 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 22:39:21.988 -07 000000458 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 1
17-03-17 22:39:21.988 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 65. Bubbles during last 5000 ms interval: R1=1, R2=0, Total=1. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1042, R2=1069, Total=2111. Warn if over 250 bubbles per interval.
17-03-17 22:39:22.078 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:39:22.108 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 22:39:22.108 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 22:39:22.108 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 22:39:22.238 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 22:39:22.268 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:39:22.698 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:39:22.728 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:39:22.728 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 22:39:22.728 -07 000000610 INF: =================== Cycle #66 ===================
17-03-17 22:39:22.728 -07 000000462 INF: WaitCommand(10000) start
17-03-17 22:39:22.728 -07 000000623 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 22:39:22.728 -07 000000623 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 22:39:23.408 -07 000000593 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 66, FrontChillerTemperature: 3.994908,
17-03-17 22:39:23.948 -07 000000623 INF: AsyncDelayTimer waited 1214ms
17-03-17 22:39:23.948 -07 000000623 INF: LanePump: Xmit /1?\r
17-03-17 22:39:23.978 -07 000000623 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 22:39:23.978 -07 000000623 INF: LanePump: Current Position of Pump is: 1110
17-03-17 22:39:24.108 -07 000000623 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 22:39:24.148 -07 000000623 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:39:25.678 -07 000000623 INF: LanePump: Xmit /1Q\r
17-03-17 22:39:25.708 -07 000000623 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:39:26.128 -07 000000623 INF: LanePump: Xmit /1Q\r
17-03-17 22:39:26.158 -07 000000623 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:39:26.158 -07 000000623 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-17 22:39:26.158 -07 000000623 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 22:39:26.158 -07 000000623 INF: ===================  ===================
17-03-17 22:39:26.988 -07 000000593 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:39:26.998 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 65. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1042, R2=1069, Total=2111. Warn if over 250 bubbles per interval.
17-03-17 22:39:28.778 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 66, FrontChillerTemperature: 4.000345,
17-03-17 22:39:31.988 -07 000000608 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 0
17-03-17 22:39:31.998 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 65. Bubbles during last 5000 ms interval: R1=0, R2=1, Total=1. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1042, R2=1070, Total=2112. Warn if over 250 bubbles per interval.
17-03-17 22:39:32.738 -07 000000462 INF: WaitCommand(10000) end
17-03-17 22:39:32.738 -07 000000610 INF: =================== Cycle #66, Imaging ===================
17-03-17 22:39:32.738 -07 000000610 INF: Imaging Cycle 66: ScanTilesCommand Cycle 66 time start.
17-03-17 22:39:32.738 -07 000000610 INF: ReagentValve: Go to position 24 (Plug) - Start of ScanTilesCommand
17-03-17 22:39:32.738 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 22:39:32.768 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 22:39:32.768 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 24. Moving 3 positions.
17-03-17 22:39:32.768 -07 000000610 INF: ReagentValve: Xmit -18\r
17-03-17 22:39:33.068 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 22:39:33.088 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-17 22:39:33.088 -07 000000610 INF: ReagentValve: Move- from 3 to 24 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-17 22:39:33.138 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 22:39:33.158 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-17 22:39:33.158 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:39:33.158 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:39:33.158 -07 000000486 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms start.
17-03-17 22:39:33.158 -07 000000486 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:39:33.158 -07 000000486 INF: FPGA: Xmit EXLED1ON\n [RedLED]
17-03-17 22:39:33.158 -07 000000608 INF: FPGA: Recv EXLED1ON 
17-03-17 22:39:33.168 -07 000000486 INF: FPGA: 'EXLED1ON' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 22:39:33.168 -07 000000486 INF: FPGA: Xmit EXLED1ADCR\n [RedLED]
17-03-17 22:39:33.168 -07 000000462 INF: FPGA: Recv EXLED1ADCR 23074
17-03-17 22:39:33.178 -07 000000486 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:39:33.178 -07 000000486 INF: RedLED: Using Red data: Photodiode ADC 23074 --> 7.4 mW (old method), or 204.6 mW (new method). Difference = 197.1 mW
17-03-17 22:39:33.178 -07 000000486 INF: FPGA: Xmit EXLED1OFF\n [RedLED]
17-03-17 22:39:33.178 -07 000000458 INF: FPGA: Recv EXLED1OFF 
17-03-17 22:39:33.188 -07 000000486 INF: FPGA: 'EXLED1OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:39:33.188 -07 000000486 INF: RedLED: LED was on for 19 ms
17-03-17 22:39:33.188 -07 000000486 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms end. Duration was 25 ms.
17-03-17 22:39:33.188 -07 000000486 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms start.
17-03-17 22:39:33.188 -07 000000486 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:39:33.188 -07 000000486 INF: FPGA: Xmit EXLED2ON\n [GreenLED]
17-03-17 22:39:33.188 -07 000000502 INF: FPGA: Recv EXLED2ON 
17-03-17 22:39:33.198 -07 000000486 INF: FPGA: 'EXLED2ON' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:39:33.198 -07 000000486 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-17 22:39:33.198 -07 000000462 INF: FPGA: Recv EXLED1ADCR 2103
17-03-17 22:39:33.208 -07 000000486 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:39:33.208 -07 000000486 INF: GreenLED: Using Green data: Photodiode ADC 2103 --> 0.9 mW (old method), or 182.7 mW (new method). Difference = 181.8 mW
17-03-17 22:39:33.208 -07 000000486 INF: FPGA: Xmit EXLED2OFF\n [GreenLED]
17-03-17 22:39:33.208 -07 000000502 INF: FPGA: Recv EXLED2OFF 
17-03-17 22:39:33.218 -07 000000486 INF: FPGA: 'EXLED2OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:39:33.218 -07 000000486 INF: GreenLED: LED was on for 19 ms
17-03-17 22:39:33.218 -07 000000486 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms end. Duration was 26 ms.
17-03-17 22:39:33.218 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-17 22:39:33.218 -07 000000593 INF: FPGA: Recv EMCUR 
17-03-17 22:39:33.228 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:39:33.228 -07 000000610 INF: FPGA: Xmit EMOUT 20 70\n [Compensator]
17-03-17 22:39:33.728 -07 000000593 INF: FPGA: Recv EMOUT
17-03-17 22:39:33.728 -07 000000610 INF: FPGA: 'EMOUT 20 70' command took 0 ms to send, 494 ms to get response, and 502 ms overall
17-03-17 22:39:33.728 -07 000000610 INF: FPGA: Xmit EMCUR 75\n [Compensator]
17-03-17 22:39:33.728 -07 000000593 INF: FPGA: Recv EMCUR 
17-03-17 22:39:33.738 -07 000000610 INF: FPGA: 'EMCUR 75' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 22:39:33.738 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 22:39:33.738 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 75.380859375, Z-Position -0.127595560155609. ------
17-03-17 22:39:33.738 -07 000000486 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:39:33.738 -07 000000458 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.17936 mm
17-03-17 22:39:33.738 -07 000000458 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:39:33.748 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:39:33.748 -07 000000486 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 22:39:33.748 -07 000000486 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:39:33.748 -07 000000593 INF: Z Motor: Entering MoveAbsStepped (DAC = 39180, sync = True, waitForSettling = False)
17-03-17 22:39:33.748 -07 000000593 INF: Z Motor: Moving to -0.179355 mm, started at -0.127596 mm, distance = -51.76 um
17-03-17 22:39:33.748 -07 000000576 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-17 22:39:33.748 -07 000000576 INF: Y Motor: Moving to 59.9126 mm, started at 75.3809 mm, delta = -15.4683 mm
17-03-17 22:39:33.758 -07 000000593 INF: FPGA: Xmit ZDACW 39180\n [Z Motor]
17-03-17 22:39:33.758 -07 000000502 INF: FPGA: Recv ZDACW
17-03-17 22:39:33.768 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:39:33.768 -07 000000593 INF: FPGA: 'ZDACW 39180' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-17 22:39:33.768 -07 000000608 INF: FPGA: Recv YRDPOS 154379
17-03-17 22:39:33.778 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-17 22:39:33.778 -07 000000576 INF: Y Motor: Encoder = 154379 = motor step 120608.6 = 75.3804 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:39:33.778 -07 000000593 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:39:33.778 -07 000000576 INF: Y Motor: Last commanded position = 75.3806 mm (120608.9 steps), delta from last commanded position = -15.4680 mm (-24748.8 steps). UsingTableMove = False
17-03-17 22:39:33.778 -07 000000462 INF: FPGA: Recv ZDACR 39180
17-03-17 22:39:33.778 -07 000000576 INF: Y Motor: Moving to 122701 encoder counts
17-03-17 22:39:33.788 -07 000000593 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:39:33.788 -07 000000593 INF: Z Motor: MoveAbsStepped took 37 ms (did NOT wait for settling yet))
17-03-17 22:39:33.788 -07 000000576 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-17 22:39:33.948 -07 000000608 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:39:33.948 -07 000000486 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-17 22:39:34.148 -07 000000593 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 66, FrontChillerTemperature: 4.001704,
17-03-17 22:39:35.468 -07 000000502 INF: FPGA: Recv YMVTO 122703 24776
17-03-17 22:39:35.468 -07 000000576 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1676 ms to get response, and 1693 ms overall
17-03-17 22:39:35.468 -07 000000576 INF: Y Motor: Position error before settling = 2 encoder counts (0.001 mm)
17-03-17 22:39:35.468 -07 000000576 INF: Y Motor: To move from 75.380 to 59.913 (-15.468 mm) should take 24748 steps, but required 24776 steps (15.485 mm). Slippage = 0.018 mm (0.00%).
17-03-17 22:39:35.468 -07 000000576 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1693 ms, distance = 15.468 mm, average velocity = 9.137 mm/sec
17-03-17 22:39:36.988 -07 000000486 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:39:36.998 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 65. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1042, R2=1070, Total=2112. Warn if over 250 bubbles per interval.
17-03-17 22:39:38.318 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:39:38.318 -07 000000593 INF: FPGA: Recv YRDPOS 122696
17-03-17 22:39:38.328 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:39:38.328 -07 000000576 INF: Y Motor: Encoder = 122696 = motor step 95856.3 = 59.9102 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:39:38.348 -07 000000576 INF: Y Motor: After move to 59.912609, error = -0.002453, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:39:38.348 -07 000000576 INF: Y Motor: Position error after settling = -5 encoder counts (-0.002 mm), Delta during settling = -7 counts (-0.003 mm)
17-03-17 22:39:38.348 -07 000000576 INF: Y Motor: Moved to 59.9102 after 4603 ms
17-03-17 22:39:38.348 -07 000000458 INF: Z Motor: EndOfMoveAbsStepped: target = -0.179355 mm (DAC = 39180)
17-03-17 22:39:38.348 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:39:38.358 -07 000000541 INF: FPGA: Recv ZSGSRD 37206
17-03-17 22:39:38.358 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-17 22:39:38.358 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:39:38.358 -07 000000462 INF: FPGA: Recv ZSGSRD 37214
17-03-17 22:39:38.368 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:39:38.368 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:39:38.368 -07 000000486 INF: FPGA: Recv ZSGSRD 37205
17-03-17 22:39:38.378 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:39:38.378 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:39:38.378 -07 000000593 INF: FPGA: Recv ZSGSRD 37206
17-03-17 22:39:38.388 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:39:38.388 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:39:38.388 -07 000000576 INF: FPGA: Recv ZSGSRD 37209
17-03-17 22:39:38.398 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:39:38.398 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:39:38.398 -07 000000593 INF: FPGA: Recv ZSGSRD 37208
17-03-17 22:39:38.408 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:39:38.408 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:39:38.408 -07 000000462 INF: FPGA: Recv ZSGSRD 37210
17-03-17 22:39:38.418 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:39:38.418 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:39:38.418 -07 000000576 INF: FPGA: Recv ZSGSRD 37205
17-03-17 22:39:38.428 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:39:38.428 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:39:38.428 -07 000000593 INF: FPGA: Recv ZSGSRD 37208
17-03-17 22:39:38.438 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:39:38.438 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:39:38.438 -07 000000576 INF: FPGA: Recv ZSGSRD 37210
17-03-17 22:39:38.448 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:39:38.448 -07 000000458 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:39:38.448 -07 000000486 INF: FPGA: Recv ZPIEZORD 33657
17-03-17 22:39:38.458 -07 000000458 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:39:38.458 -07 000000458 INF: Z Motor: Piezo is near 51.9 V (nominally 0 to 100 V), expect near 59.8 V, since DAC is at 5.978 V. Piezo Error = -7.9 V.
17-03-17 22:39:38.458 -07 000000458 INF: Z Motor: ReadAdcAverage: Commanded Z = -179.4 um, Read 10 ADC samples: Avg = 37208 (-178.5 uncal um), Error = 0.9 uncal um, Median = 37208 (-178.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 37205 (-178.4 uncal um), Max = 37214 (-178.5 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 22:39:38.458 -07 000000458 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37208, posNoise = 6, negNoise = 3
17-03-17 22:39:38.458 -07 000000458 INF: Z Motor: After move to -0.179355, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:39:38.458 -07 000000458 INF: Z Motor: Settle wait time = 4606 ms, measure time = 102 ms (allowed 150 ms), total time = 4708 ms
17-03-17 22:39:38.458 -07 000000458 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 22:39:38.508 -07 000000458 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4760 ms
17-03-17 22:39:38.508 -07 000000458 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:39:38.508 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:39:38.508 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:39:38.508 -07 000000458 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:39:38.508 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:39:38.508 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:39:38.508 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:39:38.518 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:39:38.518 -07 000000608 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-17 22:39:38.538 -07 000000608 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 23 ms.
17-03-17 22:39:38.538 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:39:38.538 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-17 22:39:38.538 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:39:38.558 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 22:39:38.558 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 42 ms.
17-03-17 22:39:38.558 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:39:38.598 -07 000000458 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:39:38.798 -07 000000593 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:39:38.798 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:39:38.798 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:39:38.808 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 22:39:38.838 -07 000000486 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:39:38.838 -07 000000608 INF: FPGA: Recv CAMSNAP
17-03-17 22:39:38.838 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 285 ms overall
17-03-17 22:39:38.928 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 22:39:38.928 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:39:38.928 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:39:38.928 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-17 22:39:39.038 -07 000000593 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:39:39.038 -07 000000486 INF: Image SNR check: start
17-03-17 22:39:39.038 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:39:39.048 -07 000000593 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:39:39.048 -07 000000593 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:39:39.048 -07 000000486 INF: Image SNR check: pass  [peak (Max-Min)=59.26]
17-03-17 22:39:39.048 -07 000000486 INF: Autofocus start
17-03-17 22:39:39.048 -07 000000486 INF: MeasureProfile start
17-03-17 22:39:39.058 -07 000000486 INF: MeasureProfile done
17-03-17 22:39:39.058 -07 000000486 INF: X=32  Z correction [um]=0.09220707
17-03-17 22:39:39.058 -07 000000486 INF: Autofocus finished
17-03-17 22:39:39.248 -07 000000502 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:39:39.248 -07 000000593 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:39:39.248 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.91015625, Z-position -0.179355437381777. ----------
17-03-17 22:39:39.248 -07 000000610 INF: Cycle	66	Tile	1	Exposure Settings		A	457	G	220	T	220	C	457
17-03-17 22:39:39.258 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37713, sync = True, waitForSettling = True)
17-03-17 22:39:39.258 -07 000000610 INF: Z Motor: Moving to -0.172639 mm, started at -0.179355 mm, distance = 6.72 um
17-03-17 22:39:39.258 -07 000000610 INF: FPGA: Xmit ZDACW 37713\n [Z Motor]
17-03-17 22:39:39.258 -07 000000502 INF: FPGA: Recv ZDACW
17-03-17 22:39:39.268 -07 000000610 INF: FPGA: 'ZDACW 37713' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:39:39.268 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:39:39.268 -07 000000486 INF: FPGA: Recv ZDACR 37713
17-03-17 22:39:39.278 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:39:39.278 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:39:39.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:39:39.428 -07 000000458 INF: FPGA: Recv ZSGSRD 36161
17-03-17 22:39:39.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:39:39.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:39:39.438 -07 000000541 INF: FPGA: Recv ZSGSRD 36164
17-03-17 22:39:39.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:39:39.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:39:39.448 -07 000000458 INF: FPGA: Recv ZSGSRD 36170
17-03-17 22:39:39.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:39:39.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:39:39.458 -07 000000486 INF: FPGA: Recv ZSGSRD 36158
17-03-17 22:39:39.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:39:39.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:39:39.468 -07 000000541 INF: FPGA: Recv ZSGSRD 36161
17-03-17 22:39:39.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:39:39.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:39:39.478 -07 000000502 INF: FPGA: Recv ZSGSRD 36165
17-03-17 22:39:39.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:39:39.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:39:39.488 -07 000000458 INF: FPGA: Recv ZSGSRD 36161
17-03-17 22:39:39.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:39:39.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:39:39.498 -07 000000486 INF: FPGA: Recv ZSGSRD 36164
17-03-17 22:39:39.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:39:39.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:39:39.518 -07 000000541 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 66, FrontChillerTemperature: 4.02213,
17-03-17 22:39:39.518 -07 000000541 INF: FPGA: Recv ZSGSRD 36166
17-03-17 22:39:39.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:39:39.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:39:39.548 -07 000000576 INF: FPGA: Recv ZSGSRD 36166
17-03-17 22:39:39.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:39:39.558 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:39:39.558 -07 000000502 INF: FPGA: Recv ZPIEZORD 32271
17-03-17 22:39:39.568 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:39:39.568 -07 000000610 INF: Z Motor: Piezo is near 48.9 V (nominally 0 to 100 V), expect near 57.5 V, since DAC is at 5.755 V. Piezo Error = -8.6 V.
17-03-17 22:39:39.568 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.6 um, Read 10 ADC samples: Avg = 36164 (-171.8 uncal um), Error = 0.9 uncal um, Median = 36164 (-171.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36158 (-171.7 uncal um), Max = 36170 (-171.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 22:39:39.568 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36164, posNoise = 6, negNoise = 6
17-03-17 22:39:39.568 -07 000000610 INF: Z Motor: After move to -0.172639, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:39:39.568 -07 000000610 INF: Z Motor: MoveAbsStepped took 311 ms)
17-03-17 22:39:39.568 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:39:39.568 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:39:39.568 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:39:39.568 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:39:39.568 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:39:39.568 -07 000000593 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:39:39.568 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:39:39.568 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:39:39.568 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:39:39.568 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:39:39.568 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:39:39.568 -07 000000608 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-17 22:39:39.568 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:39:39.568 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:39:39.588 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 13 ms.
17-03-17 22:39:39.588 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 18 ms.
17-03-17 22:39:39.588 -07 000000608 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 22 ms.
17-03-17 22:39:39.588 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:39:39.598 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:39:39.598 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:39:39.608 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 22:39:39.608 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 43 ms.
17-03-17 22:39:39.618 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 457 457 220 220 37890 150\n [Camera]
17-03-17 22:39:39.818 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:39:40.268 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 651
17-03-17 22:39:40.268 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 651
17-03-17 22:39:40.278 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:39:40.278 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 651
17-03-17 22:39:40.278 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 651
17-03-17 22:39:40.278 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:39:40.278 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:39:40.278 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-17 22:39:40.288 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:39:40.288 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 22:39:40.468 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37890 842
17-03-17 22:39:40.608 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning grn on 992
17-03-17 22:39:40.678 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 386 ms.
17-03-17 22:39:40.678 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 22:39:40.678 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:39:40.678 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 394 ms.
17-03-17 22:39:40.678 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 22:39:40.678 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:39:40.678 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:39:40.678 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:39:40.678 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-17 22:39:40.688 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-17 22:39:40.838 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1212
17-03-17 22:39:40.838 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1212
17-03-17 22:39:40.838 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:39:40.838 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1212
17-03-17 22:39:40.838 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1212
17-03-17 22:39:40.838 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:39:40.968 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:39:40.968 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 1439795928, 0x0, 391868352) start.
17-03-17 22:39:40.968 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:39:40.968 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 589594896, 0x0, 418435064) start.
17-03-17 22:39:41.028 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP 1405
17-03-17 22:39:41.028 -07 000000608 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:39:41.028 -07 000000610 INF: FPGA: 'CAMDBLSNAP 457 457 220 220 37890 150' command took 2 ms to send, 1402 ms to get response, and 1411 ms overall
17-03-17 22:39:41.028 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 22:39:41.028 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.91015625, Z-Position -0.172648559905778. ------
17-03-17 22:39:41.028 -07 000000541 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:39:41.028 -07 000000608 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.17869 mm
17-03-17 22:39:41.028 -07 000000608 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:39:41.028 -07 000000502 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-17 22:39:41.028 -07 000000502 INF: Y Motor: Moving to 60.7426 mm, started at 59.9102 mm, delta = 0.8325 mm
17-03-17 22:39:41.028 -07 000000576 INF: Z Motor: Entering MoveAbsStepped (DAC = 39036, sync = True, waitForSettling = False)
17-03-17 22:39:41.028 -07 000000576 INF: Z Motor: Moving to -0.178695 mm, started at -0.172649 mm, distance = -6.05 um
17-03-17 22:39:41.038 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:39:41.048 -07 000000576 INF: FPGA: Xmit ZDACW 39036\n [Z Motor]
17-03-17 22:39:41.368 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 1439795928, 0x0, 391868352) end. Duration was 401 ms.
17-03-17 22:39:41.368 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 22:39:41.368 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:39:41.368 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 589594896, 0x0, 418435064) end. Duration was 399 ms.
17-03-17 22:39:41.368 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 22:39:41.368 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:39:41.368 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:39:41.368 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 536 ms.
17-03-17 22:39:41.378 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 22:39:41.388 -07 000000458 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:39:41.388 -07 000000458 INF: FPGA: Recv YRDPOS 122696
17-03-17 22:39:41.388 -07 000000541 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 351 ms to get response, and 354 ms overall
17-03-17 22:39:41.388 -07 000000458 INF: FPGA: Recv ZDACW
17-03-17 22:39:41.388 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 547 ms.
17-03-17 22:39:41.388 -07 000000576 INF: FPGA: 'ZDACW 39036' command took 0 ms to send, 331 ms to get response, and 351 ms overall
17-03-17 22:39:41.388 -07 000000576 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:39:41.388 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 341 ms to get response, and 351 ms overall
17-03-17 22:39:41.388 -07 000000502 INF: Y Motor: Encoder = 122696 = motor step 95856.3 = 59.9102 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:39:41.388 -07 000000502 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:39:41.388 -07 000000502 INF: Y Motor: Moving 1332 steps2
17-03-17 22:39:41.388 -07 000000458 INF: FPGA: Recv ZDACR 39036
17-03-17 22:39:41.398 -07 000000576 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:39:41.398 -07 000000576 INF: Z Motor: MoveAbsStepped took 360 ms (did NOT wait for settling yet))
17-03-17 22:39:41.398 -07 000000541 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:39:41.408 -07 000000502 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:39:41.598 -07 000000623 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:39:41.598 -07 000000541 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 211 ms overall
17-03-17 22:39:41.778 -07 000000458 INF: FPGA: Recv YMVTILE
17-03-17 22:39:41.778 -07 000000502 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-17 22:39:41.818 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:39:41.818 -07 000000462 INF: FPGA: Recv YRDPOS 124380
17-03-17 22:39:41.828 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:39:41.828 -07 000000502 INF: Y Motor: Encoder = 124380 = motor step 97171.9 = 60.7324 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:39:41.828 -07 000000502 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-17 22:39:41.828 -07 000000502 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.832 mm, average velocity = 2.107 mm/sec
17-03-17 22:39:41.988 -07 000000623 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:39:41.998 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 65. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1042, R2=1070, Total=2112. Warn if over 250 bubbles per interval.
17-03-17 22:39:42.778 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:39:42.778 -07 000000576 INF: FPGA: Recv YRDPOS 124380
17-03-17 22:39:42.788 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:39:42.788 -07 000000502 INF: Y Motor: Encoder = 124380 = motor step 97171.9 = 60.7324 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:39:42.808 -07 000000502 INF: Y Motor: After move to 60.742607, error = -0.010185, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:39:42.808 -07 000000502 INF: Y Motor: Position error after settling (table move) = -21 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:39:42.808 -07 000000502 INF: Y Motor: Moved to 60.7324 after 1777 ms (table move)
17-03-17 22:39:42.808 -07 000000608 INF: Z Motor: EndOfMoveAbsStepped: target = -0.178695 mm (DAC = 39036)
17-03-17 22:39:42.818 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:39:42.818 -07 000000541 INF: FPGA: Recv ZSGSRD 37109
17-03-17 22:39:42.828 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:39:42.828 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:39:42.828 -07 000000502 INF: FPGA: Recv ZSGSRD 37111
17-03-17 22:39:42.838 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:39:42.838 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:39:42.838 -07 000000462 INF: FPGA: Recv ZSGSRD 37110
17-03-17 22:39:42.848 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:39:42.848 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:39:42.848 -07 000000593 INF: FPGA: Recv ZSGSRD 37111
17-03-17 22:39:42.858 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:39:42.858 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:39:42.858 -07 000000576 INF: FPGA: Recv ZSGSRD 37107
17-03-17 22:39:42.868 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:39:42.868 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:39:42.868 -07 000000593 INF: FPGA: Recv ZSGSRD 37106
17-03-17 22:39:42.878 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:39:42.878 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:39:42.878 -07 000000576 INF: FPGA: Recv ZSGSRD 37108
17-03-17 22:39:42.888 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:39:42.888 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:39:42.888 -07 000000593 INF: FPGA: Recv ZSGSRD 37098
17-03-17 22:39:42.898 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:39:42.898 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:39:42.898 -07 000000576 INF: FPGA: Recv ZSGSRD 37107
17-03-17 22:39:42.908 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:39:42.908 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:39:42.908 -07 000000593 INF: FPGA: Recv ZSGSRD 37110
17-03-17 22:39:42.918 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:39:42.918 -07 000000608 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:39:42.918 -07 000000576 INF: FPGA: Recv ZPIEZORD 33528
17-03-17 22:39:42.928 -07 000000608 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:39:42.928 -07 000000608 INF: Z Motor: Piezo is near 51.6 V (nominally 0 to 100 V), expect near 59.6 V, since DAC is at 5.957 V. Piezo Error = -7.9 V.
17-03-17 22:39:42.928 -07 000000608 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.7 um, Read 10 ADC samples: Avg = 37108 (-177.8 uncal um), Error = 0.9 uncal um, Median = 37108 (-177.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 37098 (-177.8 uncal um), Max = 37111 (-177.8 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-17 22:39:42.928 -07 000000608 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37108, posNoise = 3, negNoise = 10
17-03-17 22:39:42.928 -07 000000608 INF: Z Motor: After move to -0.178695, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:39:42.928 -07 000000608 INF: Z Motor: Settle wait time = 1780 ms, measure time = 110 ms (allowed 150 ms), total time = 1890 ms
17-03-17 22:39:42.928 -07 000000608 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-17 22:39:42.968 -07 000000608 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1932 ms
17-03-17 22:39:42.968 -07 000000608 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:39:42.968 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:39:42.968 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:39:42.968 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:39:42.968 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:39:42.968 -07 000000593 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:39:42.968 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:39:42.968 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:39:42.968 -07 000000593 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:39:42.978 -07 000000593 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:39:42.978 -07 000000593 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:39:42.988 -07 000000593 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 22:39:42.988 -07 000000593 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 22:39:42.988 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:39:43.038 -07 000000462 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:39:43.238 -07 000000502 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:39:43.238 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:39:43.238 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:39:43.238 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 22:39:43.278 -07 000000458 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:39:43.278 -07 000000623 INF: FPGA: Recv CAMSNAP
17-03-17 22:39:43.278 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 284 ms overall
17-03-17 22:39:43.358 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 123 ms.
17-03-17 22:39:43.358 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:39:43.358 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:39:43.368 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 127 ms.
17-03-17 22:39:43.378 -07 000000623 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:39:43.378 -07 000000462 INF: Autofocus start
17-03-17 22:39:43.378 -07 000000462 INF: MeasureProfile start
17-03-17 22:39:43.378 -07 000000458 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:39:43.388 -07 000000623 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:39:43.388 -07 000000623 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:39:43.388 -07 000000462 INF: MeasureProfile done
17-03-17 22:39:43.388 -07 000000462 INF: X=-16  Z correction [um]=-0.1496812
17-03-17 22:39:43.388 -07 000000462 INF: Autofocus finished
17-03-17 22:39:43.588 -07 000000502 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:39:43.588 -07 000000623 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:39:43.588 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.732421875, Z-position -0.178713016167601. ----------
17-03-17 22:39:43.598 -07 000000610 INF: Cycle	66	Tile	2	Exposure Settings		A	457	G	220	T	220	C	457
17-03-17 22:39:43.598 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37516, sync = True, waitForSettling = True)
17-03-17 22:39:43.598 -07 000000610 INF: Z Motor: Moving to -0.171737 mm, started at -0.178713 mm, distance = 6.98 um
17-03-17 22:39:43.598 -07 000000610 INF: FPGA: Xmit ZDACW 37516\n [Z Motor]
17-03-17 22:39:43.598 -07 000000502 INF: FPGA: Recv ZDACW
17-03-17 22:39:43.608 -07 000000610 INF: FPGA: 'ZDACW 37516' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:39:43.608 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:39:43.608 -07 000000623 INF: FPGA: Recv ZDACR 37516
17-03-17 22:39:43.618 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:39:43.618 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:39:43.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:39:43.768 -07 000000462 INF: FPGA: Recv ZSGSRD 36026
17-03-17 22:39:43.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:39:43.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:39:43.778 -07 000000593 INF: FPGA: Recv ZSGSRD 36029
17-03-17 22:39:43.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:39:43.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:39:43.788 -07 000000462 INF: FPGA: Recv ZSGSRD 36023
17-03-17 22:39:43.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:39:43.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:39:43.798 -07 000000593 INF: FPGA: Recv ZSGSRD 36021
17-03-17 22:39:43.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:39:43.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:39:43.808 -07 000000458 INF: FPGA: Recv ZSGSRD 36028
17-03-17 22:39:43.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:39:43.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:39:43.818 -07 000000608 INF: FPGA: Recv ZSGSRD 36025
17-03-17 22:39:43.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:39:43.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:39:43.828 -07 000000576 INF: FPGA: Recv ZSGSRD 36023
17-03-17 22:39:43.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:39:43.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:39:43.838 -07 000000623 INF: FPGA: Recv ZSGSRD 36022
17-03-17 22:39:43.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:39:43.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:39:43.848 -07 000000458 INF: FPGA: Recv ZSGSRD 36020
17-03-17 22:39:43.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:39:43.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:39:43.858 -07 000000623 INF: FPGA: Recv ZSGSRD 36028
17-03-17 22:39:43.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:39:43.868 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:39:43.868 -07 000000502 INF: FPGA: Recv ZPIEZORD 32058
17-03-17 22:39:43.878 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:39:43.878 -07 000000610 INF: Z Motor: Piezo is near 48.5 V (nominally 0 to 100 V), expect near 57.2 V, since DAC is at 5.725 V. Piezo Error = -8.8 V.
17-03-17 22:39:43.878 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.7 um, Read 10 ADC samples: Avg = 36024 (-170.9 uncal um), Error = 0.9 uncal um, Median = 36024 (-170.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 36020 (-170.8 uncal um), Max = 36029 (-170.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 22:39:43.878 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36024, posNoise = 5, negNoise = 4
17-03-17 22:39:43.878 -07 000000610 INF: Z Motor: After move to -0.171737, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:39:43.878 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 22:39:43.878 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:39:43.878 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:39:43.878 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:39:43.878 -07 000000458 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:39:43.878 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:39:43.878 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:39:43.878 -07 000000593 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:39:43.878 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:39:43.878 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:39:43.878 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:39:43.878 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:39:43.878 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:39:43.888 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:39:43.888 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:39:43.888 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:39:43.888 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:39:43.898 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 22:39:43.898 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 22:39:43.898 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 22:39:43.898 -07 000000593 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 22:39:43.908 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 457 457 220 220 37692 150\n [Camera]
17-03-17 22:39:44.108 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:39:44.558 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 649
17-03-17 22:39:44.558 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 649
17-03-17 22:39:44.568 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 649
17-03-17 22:39:44.568 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 649
17-03-17 22:39:44.568 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:39:44.568 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:39:44.568 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1475218192, 0x0, 391868352) start.
17-03-17 22:39:44.568 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:39:44.568 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:39:44.568 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-17 22:39:44.758 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37692 842
17-03-17 22:39:44.898 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP turning grn on 992
17-03-17 22:39:44.918 -07 000000486 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 66, FrontChillerTemperature: 4.009895,
17-03-17 22:39:44.958 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 388 ms.
17-03-17 22:39:44.958 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 22:39:44.958 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:39:44.958 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:39:44.958 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1475218192, 0x0, 391868352) end. Duration was 394 ms.
17-03-17 22:39:44.958 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 22:39:44.958 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:39:44.958 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:39:44.958 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 22:39:44.968 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 22:39:45.128 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1212
17-03-17 22:39:45.128 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1212
17-03-17 22:39:45.128 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:39:45.128 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:39:45.128 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start.
17-03-17 22:39:45.128 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1212
17-03-17 22:39:45.128 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1212
17-03-17 22:39:45.128 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:39:45.128 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:39:45.128 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) start.
17-03-17 22:39:45.318 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP 1405
17-03-17 22:39:45.318 -07 000000512 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:39:45.318 -07 000000610 INF: FPGA: 'CAMDBLSNAP 457 457 220 220 37692 150' command took 2 ms to send, 1402 ms to get response, and 1411 ms overall
17-03-17 22:39:45.318 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 22:39:45.318 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.732421875, Z-Position -0.171749170205932. ------
17-03-17 22:39:45.438 -07 000000458 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:39:45.438 -07 000000512 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.17821 mm
17-03-17 22:39:45.438 -07 000000512 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:39:45.438 -07 000000486 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-17 22:39:45.438 -07 000000486 INF: Y Motor: Moving to 61.5726 mm, started at 60.7324 mm, delta = 0.8402 mm
17-03-17 22:39:45.448 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:39:45.518 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 397 ms.
17-03-17 22:39:45.518 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) end. Duration was 394 ms.
17-03-17 22:39:45.518 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 22:39:45.518 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:39:45.518 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 22:39:45.518 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:39:45.528 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:39:45.528 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 22:39:45.528 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 22:39:45.528 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-17 22:39:45.538 -07 000000593 INF: Z Motor: Entering MoveAbsStepped (DAC = 38930, sync = True, waitForSettling = False)
17-03-17 22:39:45.538 -07 000000593 INF: Z Motor: Moving to -0.178210 mm, started at -0.171749 mm, distance = -6.46 um
17-03-17 22:39:45.538 -07 000000593 INF: FPGA: Xmit ZDACW 38930\n [Z Motor]
17-03-17 22:39:45.538 -07 000000478 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:39:45.548 -07 000000478 INF: FPGA: Recv YRDPOS 124381
17-03-17 22:39:45.548 -07 000000458 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 100 ms to get response, and 107 ms overall
17-03-17 22:39:45.548 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 90 ms to get response, and 104 ms overall
17-03-17 22:39:45.548 -07 000000486 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:39:45.548 -07 000000478 INF: FPGA: Recv ZDACW
17-03-17 22:39:45.548 -07 000000593 INF: FPGA: 'ZDACW 38930' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 22:39:45.548 -07 000000458 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:39:45.548 -07 000000486 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:39:45.548 -07 000000486 INF: Y Motor: Moving 1344 steps-21
17-03-17 22:39:45.558 -07 000000593 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:39:45.558 -07 000000478 INF: FPGA: Recv ZDACR 38930
17-03-17 22:39:45.568 -07 000000486 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:39:45.568 -07 000000593 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-17 22:39:45.568 -07 000000593 INF: Z Motor: MoveAbsStepped took 22 ms (did NOT wait for settling yet))
17-03-17 22:39:45.748 -07 000000593 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:39:45.748 -07 000000458 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 194 ms to get response, and 203 ms overall
17-03-17 22:39:45.938 -07 000000478 INF: FPGA: Recv YMVTILE
17-03-17 22:39:45.938 -07 000000486 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 392 ms overall
17-03-17 22:39:45.978 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:39:45.988 -07 000000458 INF: FPGA: Recv YRDPOS 126081
17-03-17 22:39:45.988 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 22:39:45.988 -07 000000486 INF: Y Motor: Encoder = 126081 = motor step 98500.8 = 61.5630 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:39:45.988 -07 000000486 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-17 22:39:45.988 -07 000000486 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 392 ms, distance = 0.840 mm, average velocity = 2.143 mm/sec
17-03-17 22:39:46.938 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:39:46.938 -07 000000593 INF: FPGA: Recv YRDPOS 126082
17-03-17 22:39:46.948 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:39:46.948 -07 000000486 INF: Y Motor: Encoder = 126082 = motor step 98501.6 = 61.5635 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:39:46.968 -07 000000486 INF: Y Motor: After move to 61.572609, error = -0.009132, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:39:46.968 -07 000000486 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 22:39:46.968 -07 000000486 INF: Y Motor: Moved to 61.5635 after 1530 ms (table move)
17-03-17 22:39:46.968 -07 000000512 INF: Z Motor: EndOfMoveAbsStepped: target = -0.178210 mm (DAC = 38930)
17-03-17 22:39:46.968 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:39:46.978 -07 000000502 INF: FPGA: Recv ZSGSRD 37034
17-03-17 22:39:46.978 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 22:39:46.978 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:39:46.978 -07 000000478 INF: FPGA: Recv ZSGSRD 37028
17-03-17 22:39:46.988 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:39:46.988 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:39:46.988 -07 000000486 INF: FPGA: Recv ZSGSRD 37027
17-03-17 22:39:46.998 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:39:46.998 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:39:46.998 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:39:46.998 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 65. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1042, R2=1070, Total=2112. Warn if over 250 bubbles per interval.
17-03-17 22:39:46.998 -07 000000502 INF: FPGA: Recv ZSGSRD 37037
17-03-17 22:39:47.008 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:39:47.008 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:39:47.008 -07 000000486 INF: FPGA: Recv ZSGSRD 37032
17-03-17 22:39:47.018 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:39:47.018 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:39:47.018 -07 000000462 INF: FPGA: Recv ZSGSRD 37039
17-03-17 22:39:47.028 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:39:47.028 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:39:47.028 -07 000000593 INF: FPGA: Recv ZSGSRD 37034
17-03-17 22:39:47.038 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:39:47.038 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:39:47.038 -07 000000478 INF: FPGA: Recv ZSGSRD 37033
17-03-17 22:39:47.048 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:39:47.048 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:39:47.048 -07 000000462 INF: FPGA: Recv ZSGSRD 37026
17-03-17 22:39:47.058 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:39:47.058 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:39:47.058 -07 000000478 INF: FPGA: Recv ZSGSRD 37026
17-03-17 22:39:47.068 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:39:47.068 -07 000000512 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:39:47.068 -07 000000593 INF: FPGA: Recv ZPIEZORD 33438
17-03-17 22:39:47.078 -07 000000512 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:39:47.078 -07 000000512 INF: Z Motor: Piezo is near 51.4 V (nominally 0 to 100 V), expect near 59.4 V, since DAC is at 5.940 V. Piezo Error = -8.0 V.
17-03-17 22:39:47.078 -07 000000512 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.2 um, Read 10 ADC samples: Avg = 37032 (-177.3 uncal um), Error = 0.9 uncal um, Median = 37032 (-177.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 37026 (-177.3 uncal um), Max = 37039 (-177.4 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 22:39:47.078 -07 000000512 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37032, posNoise = 7, negNoise = 6
17-03-17 22:39:47.078 -07 000000512 INF: Z Motor: After move to -0.178210, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:39:47.078 -07 000000512 INF: Z Motor: Settle wait time = 1430 ms, measure time = 103 ms (allowed 150 ms), total time = 1533 ms
17-03-17 22:39:47.078 -07 000000512 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 22:39:47.128 -07 000000512 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1687 ms
17-03-17 22:39:47.128 -07 000000512 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:39:47.128 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:39:47.128 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:39:47.128 -07 000000478 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:39:47.128 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:39:47.128 -07 000000593 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:39:47.128 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:39:47.128 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:39:47.128 -07 000000593 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:39:47.128 -07 000000593 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:39:47.128 -07 000000593 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:39:47.148 -07 000000593 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 22:39:47.148 -07 000000593 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 22:39:47.148 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:39:47.198 -07 000000486 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:39:47.388 -07 000000608 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:39:47.388 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:39:47.398 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:39:47.398 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 22:39:47.428 -07 000000458 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:39:47.438 -07 000000462 INF: FPGA: Recv CAMSNAP
17-03-17 22:39:47.438 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 284 ms overall
17-03-17 22:39:47.508 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 22:39:47.508 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:39:47.508 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 22:39:47.508 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 22:39:47.538 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:39:47.538 -07 000000458 INF: Autofocus start
17-03-17 22:39:47.538 -07 000000458 INF: MeasureProfile start
17-03-17 22:39:47.538 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:39:47.548 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:39:47.548 -07 000000608 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:39:47.548 -07 000000458 INF: MeasureProfile done
17-03-17 22:39:47.548 -07 000000458 INF: X=48  Z correction [um]=0.1739867
17-03-17 22:39:47.548 -07 000000458 INF: Autofocus finished
17-03-17 22:39:47.748 -07 000000462 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:39:47.748 -07 000000608 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:39:47.748 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.5634765625, Z-position -0.178224776044827. ----------
17-03-17 22:39:47.748 -07 000000610 INF: Cycle	66	Tile	3	Exposure Settings		A	457	G	220	T	220	C	457
17-03-17 22:39:47.758 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37480, sync = True, waitForSettling = True)
17-03-17 22:39:47.758 -07 000000610 INF: Z Motor: Moving to -0.171572 mm, started at -0.178225 mm, distance = 6.65 um
17-03-17 22:39:47.758 -07 000000610 INF: FPGA: Xmit ZDACW 37480\n [Z Motor]
17-03-17 22:39:47.758 -07 000000462 INF: FPGA: Recv ZDACW
17-03-17 22:39:47.768 -07 000000610 INF: FPGA: 'ZDACW 37480' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:39:47.768 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:39:47.768 -07 000000458 INF: FPGA: Recv ZDACR 37480
17-03-17 22:39:47.778 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:39:47.778 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:39:47.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:39:47.928 -07 000000608 INF: FPGA: Recv ZSGSRD 35997
17-03-17 22:39:47.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:39:47.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:39:47.938 -07 000000502 INF: FPGA: Recv ZSGSRD 35997
17-03-17 22:39:47.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:39:47.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:39:47.948 -07 000000512 INF: FPGA: Recv ZSGSRD 35997
17-03-17 22:39:47.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:39:47.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:39:47.958 -07 000000458 INF: FPGA: Recv ZSGSRD 35998
17-03-17 22:39:47.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:39:47.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:39:47.968 -07 000000462 INF: FPGA: Recv ZSGSRD 36002
17-03-17 22:39:47.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:39:47.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:39:47.978 -07 000000458 INF: FPGA: Recv ZSGSRD 36005
17-03-17 22:39:47.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:39:47.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:39:47.988 -07 000000478 INF: FPGA: Recv ZSGSRD 35999
17-03-17 22:39:47.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:39:47.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:39:47.998 -07 000000512 INF: FPGA: Recv ZSGSRD 35996
17-03-17 22:39:48.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:39:48.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:39:48.008 -07 000000486 INF: FPGA: Recv ZSGSRD 35996
17-03-17 22:39:48.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:39:48.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:39:48.018 -07 000000458 INF: FPGA: Recv ZSGSRD 36000
17-03-17 22:39:48.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:39:48.028 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:39:48.028 -07 000000462 INF: FPGA: Recv ZPIEZORD 32037
17-03-17 22:39:48.038 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:39:48.038 -07 000000610 INF: Z Motor: Piezo is near 48.4 V (nominally 0 to 100 V), expect near 57.2 V, since DAC is at 5.719 V. Piezo Error = -8.8 V.
17-03-17 22:39:48.038 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.6 um, Read 10 ADC samples: Avg = 35999 (-170.7 uncal um), Error = 0.9 uncal um, Median = 35998 (-170.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35996 (-170.7 uncal um), Max = 36005 (-170.7 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 22:39:48.038 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35999, posNoise = 6, negNoise = 3
17-03-17 22:39:48.038 -07 000000610 INF: Z Motor: After move to -0.171572, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:39:48.038 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 22:39:48.038 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:39:48.038 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:39:48.038 -07 000000458 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:39:48.038 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:39:48.038 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:39:48.038 -07 000000478 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:39:48.038 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:39:48.038 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:39:48.038 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 22:39:48.038 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:39:48.038 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:39:48.038 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:39:48.038 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:39:48.038 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:39:48.038 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 22:39:48.038 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:39:48.048 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 22:39:48.048 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 22:39:48.048 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 22:39:48.048 -07 000000478 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 22:39:48.058 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 457 457 220 220 37657 150\n [Camera]
17-03-17 22:39:48.258 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning red on 195
17-03-17 22:39:48.708 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 649
17-03-17 22:39:48.708 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 649
17-03-17 22:39:48.718 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:39:48.718 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 649
17-03-17 22:39:48.718 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 649
17-03-17 22:39:48.718 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:39:48.718 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:39:48.718 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-17 22:39:48.728 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:39:48.728 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-17 22:39:48.908 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37657 842
17-03-17 22:39:49.058 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP turning grn on 995
17-03-17 22:39:49.098 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 378 ms.
17-03-17 22:39:49.098 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-17 22:39:49.098 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:39:49.098 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:39:49.098 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 22:39:49.098 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 377 ms.
17-03-17 22:39:49.098 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-17 22:39:49.098 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:39:49.108 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:39:49.118 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 22:39:49.278 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1212
17-03-17 22:39:49.278 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1212
17-03-17 22:39:49.278 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:39:49.278 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1212
17-03-17 22:39:49.278 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1212
17-03-17 22:39:49.278 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:39:49.278 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 1439795928, 0x0, 391868352) start.
17-03-17 22:39:49.278 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:39:49.278 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:39:49.278 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1475218192, 0x0, 418435064) start.
17-03-17 22:39:49.468 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP 1404
17-03-17 22:39:49.468 -07 000000458 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:39:49.468 -07 000000610 INF: FPGA: 'CAMDBLSNAP 457 457 220 220 37657 150' command took 2 ms to send, 1404 ms to get response, and 1411 ms overall
17-03-17 22:39:49.468 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 22:39:49.468 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.5634765625, Z-Position -0.171588564902388. ------
17-03-17 22:39:49.478 -07 000000458 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:39:49.478 -07 000000486 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.17793 mm
17-03-17 22:39:49.478 -07 000000486 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:39:49.478 -07 000000502 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-17 22:39:49.478 -07 000000502 INF: Y Motor: Moving to 62.4026 mm, started at 61.5635 mm, delta = 0.8391 mm
17-03-17 22:39:49.488 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:39:49.668 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1475218192, 0x0, 418435064) end. Duration was 387 ms.
17-03-17 22:39:49.668 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 22:39:49.668 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:39:49.668 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:39:49.678 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 22:39:49.678 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 1439795928, 0x0, 391868352) end. Duration was 398 ms.
17-03-17 22:39:49.678 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 22:39:49.678 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:39:49.678 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:39:49.678 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 22:39:49.688 -07 000000512 INF: Z Motor: Entering MoveAbsStepped (DAC = 38868, sync = True, waitForSettling = False)
17-03-17 22:39:49.688 -07 000000512 INF: Z Motor: Moving to -0.177926 mm, started at -0.171589 mm, distance = -6.34 um
17-03-17 22:39:49.688 -07 000000512 INF: FPGA: Xmit ZDACW 38868\n [Z Motor]
17-03-17 22:39:49.688 -07 000000478 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:39:49.688 -07 000000478 INF: FPGA: Recv YRDPOS 126082
17-03-17 22:39:49.688 -07 000000478 INF: FPGA: Recv ZDACW
17-03-17 22:39:49.688 -07 000000458 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 208 ms to get response, and 215 ms overall
17-03-17 22:39:49.688 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 198 ms to get response, and 213 ms overall
17-03-17 22:39:49.688 -07 000000502 INF: Y Motor: Encoder = 126082 = motor step 98501.6 = 61.5635 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:39:49.698 -07 000000502 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:39:49.698 -07 000000502 INF: Y Motor: Moving 1343 steps-20
17-03-17 22:39:49.698 -07 000000512 INF: FPGA: 'ZDACW 38868' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:39:49.698 -07 000000458 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:39:49.708 -07 000000502 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:39:49.718 -07 000000512 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:39:49.718 -07 000000478 INF: FPGA: Recv ZDACR 38868
17-03-17 22:39:49.728 -07 000000512 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-17 22:39:49.728 -07 000000512 INF: Z Motor: MoveAbsStepped took 34 ms (did NOT wait for settling yet))
17-03-17 22:39:49.898 -07 000000478 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:39:49.898 -07 000000458 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 196 ms to get response, and 206 ms overall
17-03-17 22:39:50.078 -07 000000478 INF: FPGA: Recv YMVTILE
17-03-17 22:39:50.078 -07 000000502 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 385 ms overall
17-03-17 22:39:50.118 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:39:50.128 -07 000000512 INF: FPGA: Recv YRDPOS 127785
17-03-17 22:39:50.128 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:39:50.128 -07 000000502 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:39:50.128 -07 000000502 INF: Y Motor: Position error before settling (table move) = -16 encoder counts (-0.008 mm)
17-03-17 22:39:50.128 -07 000000502 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 386 ms, distance = 0.839 mm, average velocity = 2.174 mm/sec
17-03-17 22:39:50.278 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 66, FrontChillerTemperature: 4.008536,
17-03-17 22:39:51.078 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:39:51.078 -07 000000541 INF: FPGA: Recv YRDPOS 127785
17-03-17 22:39:51.088 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:39:51.088 -07 000000502 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:39:51.108 -07 000000502 INF: Y Motor: After move to 62.402607, error = -0.007587, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:39:51.108 -07 000000502 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:39:51.108 -07 000000502 INF: Y Motor: Moved to 62.3950 after 1630 ms (table move)
17-03-17 22:39:51.108 -07 000000486 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177926 mm (DAC = 38868)
17-03-17 22:39:51.108 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:39:51.118 -07 000000458 INF: FPGA: Recv ZSGSRD 36994
17-03-17 22:39:51.118 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 22:39:51.118 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:39:51.118 -07 000000512 INF: FPGA: Recv ZSGSRD 36987
17-03-17 22:39:51.128 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:39:51.128 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:39:51.128 -07 000000458 INF: FPGA: Recv ZSGSRD 36993
17-03-17 22:39:51.138 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:39:51.138 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:39:51.138 -07 000000462 INF: FPGA: Recv ZSGSRD 36993
17-03-17 22:39:51.148 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:39:51.148 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:39:51.148 -07 000000576 INF: FPGA: Recv ZSGSRD 36999
17-03-17 22:39:51.158 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:39:51.158 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:39:51.158 -07 000000462 INF: FPGA: Recv ZSGSRD 36993
17-03-17 22:39:51.168 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:39:51.168 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:39:51.168 -07 000000623 INF: FPGA: Recv ZSGSRD 36986
17-03-17 22:39:51.178 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:39:51.178 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:39:51.178 -07 000000576 INF: FPGA: Recv ZSGSRD 36984
17-03-17 22:39:51.188 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:39:51.188 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:39:51.188 -07 000000623 INF: FPGA: Recv ZSGSRD 36984
17-03-17 22:39:51.198 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:39:51.198 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:39:51.198 -07 000000502 INF: FPGA: Recv ZSGSRD 36989
17-03-17 22:39:51.208 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:39:51.208 -07 000000486 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:39:51.208 -07 000000623 INF: FPGA: Recv ZPIEZORD 33396
17-03-17 22:39:51.218 -07 000000486 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:39:51.218 -07 000000486 INF: Z Motor: Piezo is near 51.3 V (nominally 0 to 100 V), expect near 59.3 V, since DAC is at 5.931 V. Piezo Error = -8.0 V.
17-03-17 22:39:51.218 -07 000000486 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.9 um, Read 10 ADC samples: Avg = 36990 (-177.1 uncal um), Error = 0.9 uncal um, Median = 36991 (-177.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 36984 (-177.0 uncal um), Max = 36999 (-177.1 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 22:39:51.218 -07 000000486 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36990, posNoise = 9, negNoise = 6
17-03-17 22:39:51.218 -07 000000486 INF: Z Motor: After move to -0.177926, error = -0.000029, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:39:51.218 -07 000000486 INF: Z Motor: Settle wait time = 1422 ms, measure time = 103 ms (allowed 150 ms), total time = 1525 ms
17-03-17 22:39:51.218 -07 000000486 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 22:39:51.268 -07 000000486 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1786 ms
17-03-17 22:39:51.268 -07 000000486 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:39:51.268 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:39:51.268 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:39:51.268 -07 000000593 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:39:51.268 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:39:51.268 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:39:51.268 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:39:51.268 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 22:39:51.268 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:39:51.278 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 8 ms.
17-03-17 22:39:51.278 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:39:51.288 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 22:39:51.288 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 22:39:51.288 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:39:51.338 -07 000000486 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:39:51.538 -07 000000576 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:39:51.538 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:39:51.538 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:39:51.538 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 677954600, 0x0, 559484976) start.
17-03-17 22:39:51.578 -07 000000541 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:39:51.578 -07 000000502 INF: FPGA: Recv CAMSNAP
17-03-17 22:39:51.578 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 284 ms overall
17-03-17 22:39:51.658 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 677954600, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 22:39:51.658 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:39:51.658 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:39:51.658 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 22:39:51.678 -07 000000486 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:39:51.678 -07 000000512 INF: Autofocus start
17-03-17 22:39:51.678 -07 000000512 INF: MeasureProfile start
17-03-17 22:39:51.678 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:39:51.688 -07 000000486 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:39:51.688 -07 000000486 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:39:51.688 -07 000000512 INF: MeasureProfile done
17-03-17 22:39:51.688 -07 000000512 INF: X=0  Z correction [um]=-0.0713522
17-03-17 22:39:51.688 -07 000000512 INF: Autofocus finished
17-03-17 22:39:51.888 -07 000000593 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:39:51.888 -07 000000486 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:39:51.888 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.39501953125, Z-position -0.177954959134873. ----------
17-03-17 22:39:51.898 -07 000000610 INF: Cycle	66	Tile	4	Exposure Settings		A	457	G	220	T	220	C	457
17-03-17 22:39:51.898 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37365, sync = True, waitForSettling = True)
17-03-17 22:39:51.898 -07 000000610 INF: Z Motor: Moving to -0.171046 mm, started at -0.177955 mm, distance = 6.91 um
17-03-17 22:39:51.898 -07 000000610 INF: FPGA: Xmit ZDACW 37365\n [Z Motor]
17-03-17 22:39:51.898 -07 000000502 INF: FPGA: Recv ZDACW
17-03-17 22:39:51.908 -07 000000610 INF: FPGA: 'ZDACW 37365' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:39:51.908 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:39:51.908 -07 000000593 INF: FPGA: Recv ZDACR 37365
17-03-17 22:39:51.918 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:39:51.918 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:39:51.998 -07 000000486 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:39:51.998 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 65. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1042, R2=1070, Total=2112. Warn if over 250 bubbles per interval.
17-03-17 22:39:52.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:39:52.068 -07 000000541 INF: FPGA: Recv ZSGSRD 35913
17-03-17 22:39:52.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:39:52.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:39:52.078 -07 000000541 INF: FPGA: Recv ZSGSRD 35922
17-03-17 22:39:52.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:39:52.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:39:52.088 -07 000000541 INF: FPGA: Recv ZSGSRD 35915
17-03-17 22:39:52.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:39:52.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:39:52.098 -07 000000541 INF: FPGA: Recv ZSGSRD 35917
17-03-17 22:39:52.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:39:52.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:39:52.108 -07 000000541 INF: FPGA: Recv ZSGSRD 35917
17-03-17 22:39:52.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:39:52.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:39:52.118 -07 000000541 INF: FPGA: Recv ZSGSRD 35911
17-03-17 22:39:52.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:39:52.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:39:52.128 -07 000000541 INF: FPGA: Recv ZSGSRD 35921
17-03-17 22:39:52.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:39:52.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:39:52.138 -07 000000541 INF: FPGA: Recv ZSGSRD 35917
17-03-17 22:39:52.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:39:52.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:39:52.148 -07 000000541 INF: FPGA: Recv ZSGSRD 35915
17-03-17 22:39:52.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:39:52.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:39:52.158 -07 000000541 INF: FPGA: Recv ZSGSRD 35912
17-03-17 22:39:52.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:39:52.168 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:39:52.168 -07 000000541 INF: FPGA: Recv ZPIEZORD 31946
17-03-17 22:39:52.178 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:39:52.178 -07 000000610 INF: Z Motor: Piezo is near 48.2 V (nominally 0 to 100 V), expect near 57.0 V, since DAC is at 5.702 V. Piezo Error = -8.8 V.
17-03-17 22:39:52.178 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.0 um, Read 10 ADC samples: Avg = 35916 (-170.2 uncal um), Error = 0.9 uncal um, Median = 35916 (-170.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35911 (-170.1 uncal um), Max = 35922 (-170.2 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 22:39:52.178 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35916, posNoise = 6, negNoise = 5
17-03-17 22:39:52.178 -07 000000610 INF: Z Motor: After move to -0.171046, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:39:52.178 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 22:39:52.178 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:39:52.178 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:39:52.178 -07 000000486 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:39:52.178 -07 000000478 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:39:52.178 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:39:52.178 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:39:52.178 -07 000000458 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:39:52.178 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:39:52.178 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 22:39:52.178 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:39:52.178 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:39:52.178 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:39:52.178 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:39:52.188 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:39:52.188 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:39:52.188 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:39:52.188 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 22:39:52.188 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 22:39:52.188 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 22:39:52.198 -07 000000458 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 22:39:52.198 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 457 457 220 220 37542 150\n [Camera]
17-03-17 22:39:52.398 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:39:52.848 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 649
17-03-17 22:39:52.848 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 649
17-03-17 22:39:52.858 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:39:52.858 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:39:52.858 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 22:39:52.858 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 649
17-03-17 22:39:52.858 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 649
17-03-17 22:39:52.858 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:39:52.858 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:39:52.858 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 22:39:53.048 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37542 842
17-03-17 22:39:53.198 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning grn on 992
17-03-17 22:39:53.248 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 393 ms.
17-03-17 22:39:53.248 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 22:39:53.248 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:39:53.248 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:39:53.248 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 22:39:53.248 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 393 ms.
17-03-17 22:39:53.248 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 22:39:53.248 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:39:53.258 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:39:53.268 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-17 22:39:53.418 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1212
17-03-17 22:39:53.418 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1212
17-03-17 22:39:53.418 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:39:53.418 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:39:53.418 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-17 22:39:53.418 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1212
17-03-17 22:39:53.418 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1212
17-03-17 22:39:53.418 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:39:53.418 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:39:53.418 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 22:39:53.608 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP 1405
17-03-17 22:39:53.608 -07 000000608 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:39:53.608 -07 000000610 INF: FPGA: 'CAMDBLSNAP 457 457 220 220 37542 150' command took 2 ms to send, 1404 ms to get response, and 1411 ms overall
17-03-17 22:39:53.608 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 22:39:53.608 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.39501953125, Z-Position -0.171055355294621. ------
17-03-17 22:39:53.608 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:39:53.608 -07 000000458 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.17764 mm
17-03-17 22:39:53.608 -07 000000458 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:39:53.818 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 399 ms.
17-03-17 22:39:53.818 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 22:39:53.818 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:39:53.818 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 399 ms.
17-03-17 22:39:53.818 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 22:39:53.818 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:39:53.818 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:39:53.828 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 22:39:53.828 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-17 22:39:53.828 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-17 22:39:53.838 -07 000000512 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-17 22:39:53.838 -07 000000512 INF: Y Motor: Moving to 63.2326 mm, started at 62.3950 mm, delta = 0.8376 mm
17-03-17 22:39:53.838 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:39:53.838 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:39:53.838 -07 000000462 INF: FPGA: Recv YRDPOS 127785
17-03-17 22:39:53.838 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 226 ms to get response, and 227 ms overall
17-03-17 22:39:53.838 -07 000000462 INF: Z Motor: Entering MoveAbsStepped (DAC = 38806, sync = True, waitForSettling = False)
17-03-17 22:39:53.838 -07 000000462 INF: Z Motor: Moving to -0.177642 mm, started at -0.171055 mm, distance = -6.59 um
17-03-17 22:39:53.848 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:39:53.848 -07 000000512 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:39:53.848 -07 000000512 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:39:53.848 -07 000000512 INF: Y Motor: Moving 1340 steps-16
17-03-17 22:39:53.848 -07 000000608 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:39:53.858 -07 000000512 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:39:53.868 -07 000000462 INF: FPGA: Xmit ZDACW 38806\n [Z Motor]
17-03-17 22:39:54.728 -07 000000623 INF: FPGA: Recv ZDACW
17-03-17 22:39:54.728 -07 000000623 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:39:54.728 -07 000000623 INF: FPGA: Recv YMVTILE
17-03-17 22:39:54.728 -07 000000608 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 870 ms to get response, and 882 ms overall
17-03-17 22:39:54.728 -07 000000462 INF: FPGA: 'ZDACW 38806' command took 0 ms to send, 850 ms to get response, and 880 ms overall
17-03-17 22:39:54.728 -07 000000462 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:39:54.728 -07 000000512 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 860 ms to get response, and 880 ms overall
17-03-17 22:39:54.728 -07 000000608 INF: FPGA: Recv ZDACR 38806
17-03-17 22:39:54.738 -07 000000462 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:39:54.738 -07 000000462 INF: Z Motor: MoveAbsStepped took 891 ms (did NOT wait for settling yet))
17-03-17 22:39:54.768 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:39:54.768 -07 000000623 INF: FPGA: Recv YRDPOS 129482
17-03-17 22:39:54.778 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:39:54.778 -07 000000512 INF: Y Motor: Encoder = 129482 = motor step 101157.8 = 63.2236 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:39:54.778 -07 000000512 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-17 22:39:54.778 -07 000000512 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 881 ms, distance = 0.838 mm, average velocity = 0.951 mm/sec
17-03-17 22:39:55.648 -07 000000623 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 66, FrontChillerTemperature: 4.009895,
17-03-17 22:39:55.728 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:39:55.728 -07 000000623 INF: FPGA: Recv YRDPOS 129482
17-03-17 22:39:55.738 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:39:55.738 -07 000000512 INF: Y Motor: Encoder = 129482 = motor step 101157.8 = 63.2236 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:39:55.788 -07 000000512 INF: Y Motor: After move to 63.232609, error = -0.008976, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:39:55.788 -07 000000512 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:39:55.788 -07 000000512 INF: Y Motor: Moved to 63.2236 after 1953 ms (table move)
17-03-17 22:39:55.798 -07 000000458 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177642 mm (DAC = 38806)
17-03-17 22:39:55.798 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:39:55.798 -07 000000478 INF: FPGA: Recv ZSGSRD 36945
17-03-17 22:39:55.808 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:39:55.808 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:39:55.808 -07 000000512 INF: FPGA: Recv ZSGSRD 36948
17-03-17 22:39:55.818 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:39:55.818 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:39:55.818 -07 000000576 INF: FPGA: Recv ZSGSRD 36942
17-03-17 22:39:55.828 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:39:55.828 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:39:55.828 -07 000000593 INF: FPGA: Recv ZSGSRD 36941
17-03-17 22:39:55.838 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:39:55.838 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:39:55.838 -07 000000512 INF: FPGA: Recv ZSGSRD 36939
17-03-17 22:39:55.848 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:39:55.848 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:39:55.848 -07 000000576 INF: FPGA: Recv ZSGSRD 36943
17-03-17 22:39:55.858 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:39:55.858 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:39:55.858 -07 000000512 INF: FPGA: Recv ZSGSRD 36946
17-03-17 22:39:55.868 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:39:55.868 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:39:55.868 -07 000000478 INF: FPGA: Recv ZSGSRD 36942
17-03-17 22:39:55.878 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:39:55.878 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:39:55.878 -07 000000462 INF: FPGA: Recv ZSGSRD 36936
17-03-17 22:39:55.888 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:39:55.888 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:39:55.888 -07 000000576 INF: FPGA: Recv ZSGSRD 36946
17-03-17 22:39:55.898 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:39:55.898 -07 000000458 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:39:55.898 -07 000000623 INF: FPGA: Recv ZPIEZORD 33311
17-03-17 22:39:55.908 -07 000000458 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:39:55.908 -07 000000458 INF: Z Motor: Piezo is near 51.2 V (nominally 0 to 100 V), expect near 59.2 V, since DAC is at 5.921 V. Piezo Error = -8.1 V.
17-03-17 22:39:55.908 -07 000000458 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.6 um, Read 10 ADC samples: Avg = 36943 (-176.8 uncal um), Error = 0.9 uncal um, Median = 36942 (-176.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36936 (-176.7 uncal um), Max = 36948 (-176.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 22:39:55.908 -07 000000458 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36943, posNoise = 5, negNoise = 7
17-03-17 22:39:55.908 -07 000000458 INF: Z Motor: After move to -0.177642, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:39:55.908 -07 000000458 INF: Z Motor: Settle wait time = 1950 ms, measure time = 110 ms (allowed 150 ms), total time = 2060 ms
17-03-17 22:39:55.908 -07 000000458 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-17 22:39:55.948 -07 000000458 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2330 ms
17-03-17 22:39:55.948 -07 000000458 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:39:55.948 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:39:55.948 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:39:55.948 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:39:55.948 -07 000000623 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:39:55.948 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:39:55.948 -07 000000593 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:39:55.948 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 22:39:55.948 -07 000000623 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:39:55.958 -07 000000623 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-17 22:39:55.958 -07 000000623 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:39:55.958 -07 000000623 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 22:39:55.958 -07 000000623 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-17 22:39:55.988 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:39:56.028 -07 000000462 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:39:56.228 -07 000000512 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:39:56.228 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:39:56.228 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:39:56.228 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 22:39:56.268 -07 000000458 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:39:56.268 -07 000000478 INF: FPGA: Recv CAMSNAP
17-03-17 22:39:56.268 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 275 ms to get response, and 303 ms overall
17-03-17 22:39:56.348 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 22:39:56.348 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:39:56.348 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:39:56.348 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-17 22:39:56.368 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:39:56.368 -07 000000458 INF: Autofocus start
17-03-17 22:39:56.368 -07 000000458 INF: MeasureProfile start
17-03-17 22:39:56.378 -07 000000478 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:39:56.378 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 1 ms to send, 3 ms to get response, and 9 ms overall
17-03-17 22:39:56.378 -07 000000512 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:39:56.388 -07 000000458 INF: MeasureProfile done
17-03-17 22:39:56.388 -07 000000458 INF: X=16  Z correction [um]=0.01042744
17-03-17 22:39:56.388 -07 000000458 INF: Autofocus finished
17-03-17 22:39:56.578 -07 000000576 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:39:56.578 -07 000000512 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 196 ms to get response, and 202 ms overall
17-03-17 22:39:56.578 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.2236328125, Z-position -0.17765302116421. ----------
17-03-17 22:39:56.588 -07 000000610 INF: Cycle	66	Tile	5	Exposure Settings		A	457	G	220	T	220	C	457
17-03-17 22:39:56.588 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37321, sync = True, waitForSettling = True)
17-03-17 22:39:56.588 -07 000000610 INF: Z Motor: Moving to -0.170845 mm, started at -0.177653 mm, distance = 6.81 um
17-03-17 22:39:56.588 -07 000000610 INF: FPGA: Xmit ZDACW 37321\n [Z Motor]
17-03-17 22:39:56.588 -07 000000478 INF: FPGA: Recv ZDACW
17-03-17 22:39:56.598 -07 000000610 INF: FPGA: 'ZDACW 37321' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 22:39:56.598 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:39:56.598 -07 000000486 INF: FPGA: Recv ZDACR 37321
17-03-17 22:39:56.608 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:39:56.608 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:39:56.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:39:56.758 -07 000000458 INF: FPGA: Recv ZSGSRD 35879
17-03-17 22:39:56.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:39:56.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:39:56.768 -07 000000512 INF: FPGA: Recv ZSGSRD 35884
17-03-17 22:39:56.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:39:56.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:39:56.778 -07 000000593 INF: FPGA: Recv ZSGSRD 35887
17-03-17 22:39:56.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:39:56.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:39:56.788 -07 000000462 INF: FPGA: Recv ZSGSRD 35882
17-03-17 22:39:56.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:39:56.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:39:56.798 -07 000000458 INF: FPGA: Recv ZSGSRD 35889
17-03-17 22:39:56.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:39:56.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:39:56.808 -07 000000512 INF: FPGA: Recv ZSGSRD 35887
17-03-17 22:39:56.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:39:56.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:39:56.818 -07 000000478 INF: FPGA: Recv ZSGSRD 35891
17-03-17 22:39:56.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:39:56.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:39:56.828 -07 000000576 INF: FPGA: Recv ZSGSRD 35884
17-03-17 22:39:56.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:39:56.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:39:56.838 -07 000000623 INF: FPGA: Recv ZSGSRD 35881
17-03-17 22:39:56.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:39:56.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:39:56.848 -07 000000576 INF: FPGA: Recv ZSGSRD 35883
17-03-17 22:39:56.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:39:56.858 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:39:56.858 -07 000000478 INF: FPGA: Recv ZPIEZORD 31896
17-03-17 22:39:56.868 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:39:56.868 -07 000000610 INF: Z Motor: Piezo is near 48.1 V (nominally 0 to 100 V), expect near 56.9 V, since DAC is at 5.695 V. Piezo Error = -8.8 V.
17-03-17 22:39:56.868 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.8 um, Read 10 ADC samples: Avg = 35885 (-170.0 uncal um), Error = 0.9 uncal um, Median = 35884 (-170.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35879 (-169.9 uncal um), Max = 35891 (-170.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 22:39:56.868 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35885, posNoise = 6, negNoise = 6
17-03-17 22:39:56.868 -07 000000610 INF: Z Motor: After move to -0.170845, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:39:56.868 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-17 22:39:56.868 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:39:56.868 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:39:56.868 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:39:56.868 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:39:56.868 -07 000000486 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:39:56.868 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:39:56.868 -07 000000623 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:39:56.868 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:39:56.868 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:39:56.868 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:39:56.868 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-17 22:39:56.868 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:39:56.878 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:39:56.878 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:39:56.878 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:39:56.878 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:39:56.888 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 22:39:56.888 -07 000000623 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 22:39:56.888 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 22:39:56.888 -07 000000486 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 22:39:56.898 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 457 457 220 220 37498 150\n [Camera]
17-03-17 22:39:56.998 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:39:56.998 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 65. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1042, R2=1070, Total=2112. Warn if over 250 bubbles per interval.
17-03-17 22:39:57.088 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:39:57.548 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 649
17-03-17 22:39:57.548 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 649
17-03-17 22:39:57.548 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:39:57.558 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 649
17-03-17 22:39:57.558 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 649
17-03-17 22:39:57.558 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:39:57.558 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:39:57.558 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-17 22:39:57.558 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:39:57.558 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-17 22:39:57.748 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37498 842
17-03-17 22:39:57.888 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP turning grn on 992
17-03-17 22:39:57.938 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 380 ms.
17-03-17 22:39:57.938 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-17 22:39:57.938 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:39:57.948 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 389 ms.
17-03-17 22:39:57.948 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 22:39:57.948 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:39:57.948 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 22:39:57.948 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:39:57.948 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 22:39:57.958 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 22:39:58.118 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1212
17-03-17 22:39:58.118 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1212
17-03-17 22:39:58.118 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:39:58.118 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1212
17-03-17 22:39:58.118 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1212
17-03-17 22:39:58.118 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:39:58.128 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:39:58.128 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start.
17-03-17 22:39:58.128 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:39:58.128 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) start.
17-03-17 22:39:58.308 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP 1404
17-03-17 22:39:58.308 -07 000000576 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:39:58.308 -07 000000610 INF: FPGA: 'CAMDBLSNAP 457 457 220 220 37498 150' command took 2 ms to send, 1402 ms to get response, and 1412 ms overall
17-03-17 22:39:58.308 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 22:39:58.308 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.2236328125, Z-Position -0.170856204718227. ------
17-03-17 22:39:58.308 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:39:58.308 -07 000000593 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.17734 mm
17-03-17 22:39:58.308 -07 000000593 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:39:58.528 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 404 ms.
17-03-17 22:39:58.528 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 22:39:58.528 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:39:58.528 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) end. Duration was 403 ms.
17-03-17 22:39:58.528 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-17 22:39:58.528 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:39:58.538 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:39:58.648 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 533 ms.
17-03-17 22:39:58.648 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 117 ms.
17-03-17 22:39:58.658 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 538 ms.
17-03-17 22:39:58.658 -07 000000623 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-17 22:39:58.658 -07 000000623 INF: Y Motor: Moving to 64.0626 mm, started at 63.2236 mm, delta = 0.8390 mm
17-03-17 22:39:58.658 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:39:58.668 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:39:58.668 -07 000000462 INF: FPGA: Recv YRDPOS 129482
17-03-17 22:39:58.668 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 353 ms to get response, and 356 ms overall
17-03-17 22:39:58.668 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 3 ms to get response, and 6 ms overall
17-03-17 22:39:58.668 -07 000000623 INF: Y Motor: Encoder = 129482 = motor step 101157.8 = 63.2236 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:39:58.668 -07 000000623 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:39:58.668 -07 000000623 INF: Y Motor: Moving 1342 steps-18
17-03-17 22:39:58.668 -07 000000462 INF: Z Motor: Entering MoveAbsStepped (DAC = 38739, sync = True, waitForSettling = False)
17-03-17 22:39:58.668 -07 000000462 INF: Z Motor: Moving to -0.177336 mm, started at -0.170856 mm, distance = -6.48 um
17-03-17 22:39:58.668 -07 000000576 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:39:58.678 -07 000000623 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:39:58.688 -07 000000462 INF: FPGA: Xmit ZDACW 38739\n [Z Motor]
17-03-17 22:39:59.228 -07 000000608 INF: FPGA: Recv ZDACW
17-03-17 22:39:59.228 -07 000000608 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:39:59.228 -07 000000608 INF: FPGA: Recv YMVTILE
17-03-17 22:39:59.228 -07 000000576 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 556 ms to get response, and 562 ms overall
17-03-17 22:39:59.228 -07 000000623 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 546 ms to get response, and 562 ms overall
17-03-17 22:39:59.228 -07 000000462 INF: FPGA: 'ZDACW 38739' command took 0 ms to send, 536 ms to get response, and 561 ms overall
17-03-17 22:39:59.228 -07 000000462 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:39:59.228 -07 000000576 INF: FPGA: Recv ZDACR 38739
17-03-17 22:39:59.238 -07 000000462 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 22:39:59.238 -07 000000462 INF: Z Motor: MoveAbsStepped took 567 ms (did NOT wait for settling yet))
17-03-17 22:39:59.278 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:39:59.278 -07 000000462 INF: FPGA: Recv YRDPOS 131187
17-03-17 22:39:59.288 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:39:59.288 -07 000000623 INF: Y Motor: Encoder = 131187 = motor step 102489.8 = 64.0562 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:39:59.288 -07 000000623 INF: Y Motor: Position error before settling (table move) = -13 encoder counts (-0.006 mm)
17-03-17 22:39:59.288 -07 000000623 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 562 ms, distance = 0.839 mm, average velocity = 1.493 mm/sec
17-03-17 22:40:00.238 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:40:00.238 -07 000000462 INF: FPGA: Recv YRDPOS 131187
17-03-17 22:40:00.248 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:40:00.248 -07 000000623 INF: Y Motor: Encoder = 131187 = motor step 102489.8 = 64.0562 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:40:00.268 -07 000000623 INF: Y Motor: After move to 64.062607, error = -0.006454, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:40:00.268 -07 000000623 INF: Y Motor: Position error after settling (table move) = -13 encoder counts (-0.006 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:40:00.268 -07 000000623 INF: Y Motor: Moved to 64.0562 after 1607 ms (table move)
17-03-17 22:40:00.268 -07 000000593 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177336 mm (DAC = 38739)
17-03-17 22:40:00.268 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:00.278 -07 000000576 INF: FPGA: Recv ZSGSRD 36889
17-03-17 22:40:00.278 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 5 ms overall
17-03-17 22:40:00.278 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:00.278 -07 000000576 INF: FPGA: Recv ZSGSRD 36902
17-03-17 22:40:00.288 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:40:00.288 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:00.288 -07 000000576 INF: FPGA: Recv ZSGSRD 36899
17-03-17 22:40:00.298 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:00.298 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:00.298 -07 000000608 INF: FPGA: Recv ZSGSRD 36889
17-03-17 22:40:00.308 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:00.308 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:00.308 -07 000000458 INF: FPGA: Recv ZSGSRD 36880
17-03-17 22:40:00.318 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:00.318 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:00.318 -07 000000458 INF: FPGA: Recv ZSGSRD 36889
17-03-17 22:40:00.328 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:00.328 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:00.328 -07 000000576 INF: FPGA: Recv ZSGSRD 36896
17-03-17 22:40:00.338 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:00.338 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:00.338 -07 000000462 INF: FPGA: Recv ZSGSRD 36898
17-03-17 22:40:00.348 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:00.348 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:00.348 -07 000000458 INF: FPGA: Recv ZSGSRD 36889
17-03-17 22:40:00.358 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:00.358 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:00.358 -07 000000608 INF: FPGA: Recv ZSGSRD 36885
17-03-17 22:40:00.368 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:00.368 -07 000000593 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:40:00.368 -07 000000608 INF: FPGA: Recv ZPIEZORD 33274
17-03-17 22:40:00.378 -07 000000593 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:00.378 -07 000000593 INF: Z Motor: Piezo is near 51.1 V (nominally 0 to 100 V), expect near 59.1 V, since DAC is at 5.911 V. Piezo Error = -8.0 V.
17-03-17 22:40:00.378 -07 000000593 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.3 um, Read 10 ADC samples: Avg = 36892 (-176.4 uncal um), Error = 0.9 uncal um, Median = 36889 (-176.4 uncal um), StdDev = 7 (0.0 uncal um), Range = 22 (0.1 uncal um), Min = 36880 (-176.4 uncal um), Max = 36902 (-176.5 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 12 (0.1 uncal um)
17-03-17 22:40:00.378 -07 000000593 INF: Z Motor: ADC noise = 12, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36892, posNoise = 10, negNoise = 12
17-03-17 22:40:00.378 -07 000000593 INF: Z Motor: After move to -0.177336, error = 0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:40:00.378 -07 000000593 INF: Z Motor: Settle wait time = 1603 ms, measure time = 103 ms (allowed 150 ms), total time = 1706 ms
17-03-17 22:40:00.378 -07 000000593 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 22:40:00.428 -07 000000593 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2112 ms
17-03-17 22:40:00.428 -07 000000593 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:40:00.428 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:40:00.428 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:40:00.428 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:40:00.428 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:40:00.428 -07 000000458 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:40:00.428 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:40:00.428 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:40:00.428 -07 000000458 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:40:00.438 -07 000000458 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:40:00.438 -07 000000458 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:40:00.438 -07 000000458 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 22:40:00.438 -07 000000458 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-17 22:40:00.448 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:40:00.488 -07 000000623 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:40:00.688 -07 000000458 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:40:00.688 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:40:00.688 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:40:00.688 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 22:40:00.728 -07 000000486 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:40:00.728 -07 000000593 INF: FPGA: Recv CAMSNAP
17-03-17 22:40:00.728 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 284 ms overall
17-03-17 22:40:00.808 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 22:40:00.808 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:40:00.808 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:40:00.808 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 22:40:00.828 -07 000000593 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:40:00.828 -07 000000576 INF: Autofocus start
17-03-17 22:40:00.828 -07 000000576 INF: MeasureProfile start
17-03-17 22:40:00.828 -07 000000486 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:40:00.838 -07 000000593 INF: FPGA: 'FOCMRRCUR 80' command took 1 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:40:00.838 -07 000000593 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:40:00.838 -07 000000576 INF: MeasureProfile done
17-03-17 22:40:00.838 -07 000000576 INF: X=-16  Z correction [um]=-0.1496812
17-03-17 22:40:00.838 -07 000000576 INF: Autofocus finished
17-03-17 22:40:01.018 -07 000000458 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 66, FrontChillerTemperature: 3.999021,
17-03-17 22:40:01.038 -07 000000458 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:40:01.038 -07 000000593 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 204 ms overall
17-03-17 22:40:01.038 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.05615234375, Z-position -0.17732538634498. ----------
17-03-17 22:40:01.038 -07 000000610 INF: Cycle	66	Tile	6	Exposure Settings		A	457	G	220	T	220	C	457
17-03-17 22:40:01.048 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37219, sync = True, waitForSettling = True)
17-03-17 22:40:01.048 -07 000000610 INF: Z Motor: Moving to -0.170378 mm, started at -0.177325 mm, distance = 6.95 um
17-03-17 22:40:01.058 -07 000000610 INF: FPGA: Xmit ZDACW 37219\n [Z Motor]
17-03-17 22:40:01.058 -07 000000593 INF: FPGA: Recv ZDACW
17-03-17 22:40:01.068 -07 000000610 INF: FPGA: 'ZDACW 37219' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 22:40:01.068 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:40:01.068 -07 000000623 INF: FPGA: Recv ZDACR 37219
17-03-17 22:40:01.078 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:01.078 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:40:01.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:01.228 -07 000000541 INF: FPGA: Recv ZSGSRD 35811
17-03-17 22:40:01.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:01.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:01.238 -07 000000593 INF: FPGA: Recv ZSGSRD 35817
17-03-17 22:40:01.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:01.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:01.248 -07 000000623 INF: FPGA: Recv ZSGSRD 35814
17-03-17 22:40:01.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:01.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:01.258 -07 000000593 INF: FPGA: Recv ZSGSRD 35807
17-03-17 22:40:01.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:01.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:01.268 -07 000000541 INF: FPGA: Recv ZSGSRD 35818
17-03-17 22:40:01.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:01.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:01.278 -07 000000593 INF: FPGA: Recv ZSGSRD 35808
17-03-17 22:40:01.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:01.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:01.288 -07 000000623 INF: FPGA: Recv ZSGSRD 35818
17-03-17 22:40:01.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:01.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:01.298 -07 000000576 INF: FPGA: Recv ZSGSRD 35814
17-03-17 22:40:01.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:01.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:01.308 -07 000000541 INF: FPGA: Recv ZSGSRD 35812
17-03-17 22:40:01.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:01.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:01.318 -07 000000593 INF: FPGA: Recv ZSGSRD 35819
17-03-17 22:40:01.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:01.348 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:40:01.348 -07 000000486 INF: FPGA: Recv ZPIEZORD 31794
17-03-17 22:40:01.358 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:40:01.358 -07 000000610 INF: Z Motor: Piezo is near 47.9 V (nominally 0 to 100 V), expect near 56.8 V, since DAC is at 5.679 V. Piezo Error = -8.9 V.
17-03-17 22:40:01.358 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.4 um, Read 10 ADC samples: Avg = 35814 (-169.5 uncal um), Error = 0.9 uncal um, Median = 35814 (-169.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35807 (-169.5 uncal um), Max = 35819 (-169.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 22:40:01.358 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35814, posNoise = 5, negNoise = 7
17-03-17 22:40:01.358 -07 000000610 INF: Z Motor: After move to -0.170378, error = -0.000022, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:40:01.358 -07 000000610 INF: Z Motor: MoveAbsStepped took 308 ms)
17-03-17 22:40:01.358 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:40:01.358 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:40:01.358 -07 000000623 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:40:01.358 -07 000000541 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:40:01.358 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:40:01.358 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:40:01.358 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:40:01.358 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:40:01.358 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:40:01.358 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:40:01.358 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:40:01.358 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:40:01.368 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 22:40:01.368 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:40:01.368 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:40:01.368 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:40:01.378 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-17 22:40:01.378 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 22:40:01.378 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-17 22:40:01.378 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 22:40:01.388 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 457 457 220 220 37396 150\n [Camera]
17-03-17 22:40:01.588 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:40:01.998 -07 000000486 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:40:01.998 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 65. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1042, R2=1070, Total=2112. Warn if over 250 bubbles per interval.
17-03-17 22:40:02.038 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 649
17-03-17 22:40:02.038 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 649
17-03-17 22:40:02.038 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:40:02.048 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 649
17-03-17 22:40:02.048 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 649
17-03-17 22:40:02.048 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:40:02.048 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:40:02.048 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-17 22:40:02.048 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:40:02.048 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-17 22:40:02.238 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37396 842
17-03-17 22:40:02.378 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning grn on 992
17-03-17 22:40:02.438 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 394 ms.
17-03-17 22:40:02.438 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 22:40:02.438 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:40:02.448 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 394 ms.
17-03-17 22:40:02.448 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 22:40:02.448 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:40:02.448 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:40:02.448 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 22:40:02.448 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:40:02.458 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-17 22:40:02.608 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1212
17-03-17 22:40:02.608 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1212
17-03-17 22:40:02.608 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:40:02.608 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1212
17-03-17 22:40:02.608 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1212
17-03-17 22:40:02.608 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:40:02.608 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:40:02.608 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 656674232, 0x0, 418435064) start.
17-03-17 22:40:02.608 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:40:02.608 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start.
17-03-17 22:40:02.798 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP 1405
17-03-17 22:40:02.798 -07 000000478 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:40:02.798 -07 000000610 INF: FPGA: 'CAMDBLSNAP 457 457 220 220 37396 150' command took 2 ms to send, 1402 ms to get response, and 1413 ms overall
17-03-17 22:40:02.798 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 22:40:02.798 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.05615234375, Z-Position -0.170400085656162. ------
17-03-17 22:40:02.798 -07 000000486 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:40:02.798 -07 000000608 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.17679 mm
17-03-17 22:40:02.798 -07 000000608 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:40:02.798 -07 000000478 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-17 22:40:02.798 -07 000000478 INF: Y Motor: Moving to 64.8926 mm, started at 64.0562 mm, delta = 0.8365 mm
17-03-17 22:40:02.808 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:40:02.998 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 656674232, 0x0, 418435064) end. Duration was 385 ms.
17-03-17 22:40:02.998 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 22:40:02.998 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:40:02.998 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:40:02.998 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 392 ms.
17-03-17 22:40:02.998 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 22:40:02.998 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:40:03.008 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 22:40:03.008 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 22:40:03.008 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 22:40:03.018 -07 000000458 INF: Z Motor: Entering MoveAbsStepped (DAC = 38620, sync = True, waitForSettling = False)
17-03-17 22:40:03.018 -07 000000458 INF: Z Motor: Moving to -0.176791 mm, started at -0.170400 mm, distance = -6.39 um
17-03-17 22:40:03.018 -07 000000458 INF: FPGA: Xmit ZDACW 38620\n [Z Motor]
17-03-17 22:40:03.018 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:40:03.018 -07 000000462 INF: FPGA: Recv YRDPOS 131188
17-03-17 22:40:03.018 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 204 ms to get response, and 214 ms overall
17-03-17 22:40:03.018 -07 000000478 INF: Y Motor: Encoder = 131188 = motor step 102490.6 = 64.0566 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:40:03.018 -07 000000462 INF: FPGA: Recv ZDACW
17-03-17 22:40:03.018 -07 000000486 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 214 ms to get response, and 217 ms overall
17-03-17 22:40:03.018 -07 000000478 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:40:03.018 -07 000000478 INF: Y Motor: Moving 1338 steps-13
17-03-17 22:40:03.028 -07 000000458 INF: FPGA: 'ZDACW 38620' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:40:03.028 -07 000000478 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:40:03.038 -07 000000486 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:40:03.048 -07 000000458 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:40:03.048 -07 000000462 INF: FPGA: Recv ZDACR 38620
17-03-17 22:40:03.058 -07 000000458 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:40:03.058 -07 000000458 INF: Z Motor: MoveAbsStepped took 37 ms (did NOT wait for settling yet))
17-03-17 22:40:03.238 -07 000000458 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:40:03.238 -07 000000486 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 216 ms overall
17-03-17 22:40:03.398 -07 000000486 INF: FPGA: Recv YMVTILE
17-03-17 22:40:03.398 -07 000000478 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 378 ms overall
17-03-17 22:40:03.438 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:40:03.438 -07 000000486 INF: FPGA: Recv YRDPOS 132871
17-03-17 22:40:03.448 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:40:03.448 -07 000000478 INF: Y Motor: Encoder = 132871 = motor step 103805.5 = 64.8784 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:40:03.448 -07 000000478 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-17 22:40:03.448 -07 000000478 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.836 mm, average velocity = 2.213 mm/sec
17-03-17 22:40:04.398 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:40:04.398 -07 000000462 INF: FPGA: Recv YRDPOS 132871
17-03-17 22:40:04.408 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:40:04.408 -07 000000478 INF: Y Motor: Encoder = 132871 = motor step 103805.5 = 64.8784 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:40:04.428 -07 000000478 INF: Y Motor: After move to 64.892609, error = -0.014191, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:40:04.428 -07 000000478 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:40:04.428 -07 000000478 INF: Y Motor: Moved to 64.8784 after 1625 ms (table move)
17-03-17 22:40:04.438 -07 000000608 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176791 mm (DAC = 38620)
17-03-17 22:40:04.438 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:04.438 -07 000000478 INF: FPGA: Recv ZSGSRD 36803
17-03-17 22:40:04.448 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:04.448 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:04.448 -07 000000623 INF: FPGA: Recv ZSGSRD 36812
17-03-17 22:40:04.458 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:04.458 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:04.458 -07 000000462 INF: FPGA: Recv ZSGSRD 36811
17-03-17 22:40:04.468 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:04.468 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:04.468 -07 000000623 INF: FPGA: Recv ZSGSRD 36812
17-03-17 22:40:04.478 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:04.478 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:04.478 -07 000000576 INF: FPGA: Recv ZSGSRD 36810
17-03-17 22:40:04.488 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:04.488 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:04.488 -07 000000623 INF: FPGA: Recv ZSGSRD 36805
17-03-17 22:40:04.498 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:04.498 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:04.498 -07 000000576 INF: FPGA: Recv ZSGSRD 36811
17-03-17 22:40:04.508 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:04.508 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:04.508 -07 000000623 INF: FPGA: Recv ZSGSRD 36805
17-03-17 22:40:04.518 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:04.518 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:04.518 -07 000000576 INF: FPGA: Recv ZSGSRD 36802
17-03-17 22:40:04.528 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:04.528 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:04.528 -07 000000458 INF: FPGA: Recv ZSGSRD 36812
17-03-17 22:40:04.538 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:04.538 -07 000000608 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:40:04.538 -07 000000576 INF: FPGA: Recv ZPIEZORD 33174
17-03-17 22:40:04.548 -07 000000608 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:04.548 -07 000000608 INF: Z Motor: Piezo is near 50.9 V (nominally 0 to 100 V), expect near 58.9 V, since DAC is at 5.893 V. Piezo Error = -8.1 V.
17-03-17 22:40:04.548 -07 000000608 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.8 um, Read 10 ADC samples: Avg = 36808 (-175.9 uncal um), Error = 0.9 uncal um, Median = 36810 (-175.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 36802 (-175.9 uncal um), Max = 36812 (-175.9 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 22:40:04.548 -07 000000608 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36808, posNoise = 4, negNoise = 6
17-03-17 22:40:04.548 -07 000000608 INF: Z Motor: After move to -0.176791, error = 0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:40:04.548 -07 000000608 INF: Z Motor: Settle wait time = 1417 ms, measure time = 110 ms (allowed 150 ms), total time = 1527 ms
17-03-17 22:40:04.548 -07 000000608 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-17 22:40:04.588 -07 000000608 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1782 ms
17-03-17 22:40:04.588 -07 000000608 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:40:04.588 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:40:04.588 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:40:04.588 -07 000000486 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:40:04.588 -07 000000623 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:40:04.588 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:40:04.588 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:40:04.588 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:40:04.588 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:40:04.598 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:40:04.598 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:40:04.598 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 22:40:04.598 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 22:40:04.608 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:40:04.648 -07 000000608 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:40:04.848 -07 000000458 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:40:04.848 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:40:04.848 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:40:04.848 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1456670992, 0x0, 559484976) start.
17-03-17 22:40:04.888 -07 000000623 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:40:04.888 -07 000000458 INF: FPGA: Recv CAMSNAP
17-03-17 22:40:04.888 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 284 ms overall
17-03-17 22:40:04.968 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1456670992, 0x0, 559484976) end. Duration was 119 ms.
17-03-17 22:40:04.968 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:40:04.968 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 22:40:04.968 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 121 ms.
17-03-17 22:40:04.988 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:40:04.988 -07 000000478 INF: Autofocus start
17-03-17 22:40:04.988 -07 000000478 INF: MeasureProfile start
17-03-17 22:40:04.988 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:40:04.998 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 22:40:04.998 -07 000000576 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:40:04.998 -07 000000478 INF: MeasureProfile done
17-03-17 22:40:04.998 -07 000000478 INF: X=64  Z correction [um]=0.2557664
17-03-17 22:40:04.998 -07 000000478 INF: Autofocus finished
17-03-17 22:40:05.198 -07 000000486 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:40:05.198 -07 000000576 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:40:05.198 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87841796875, Z-position -0.176785752525072. ----------
17-03-17 22:40:05.198 -07 000000610 INF: Cycle	66	Tile	7	Exposure Settings		A	457	G	220	T	220	C	457
17-03-17 22:40:05.208 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37188, sync = True, waitForSettling = True)
17-03-17 22:40:05.208 -07 000000610 INF: Z Motor: Moving to -0.170236 mm, started at -0.176786 mm, distance = 6.55 um
17-03-17 22:40:05.208 -07 000000610 INF: FPGA: Xmit ZDACW 37188\n [Z Motor]
17-03-17 22:40:05.208 -07 000000623 INF: FPGA: Recv ZDACW
17-03-17 22:40:05.218 -07 000000610 INF: FPGA: 'ZDACW 37188' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:40:05.218 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:40:05.218 -07 000000458 INF: FPGA: Recv ZDACR 37188
17-03-17 22:40:05.228 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:05.228 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:40:05.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:05.378 -07 000000486 INF: FPGA: Recv ZSGSRD 35790
17-03-17 22:40:05.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:40:05.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:05.388 -07 000000462 INF: FPGA: Recv ZSGSRD 35793
17-03-17 22:40:05.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:05.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:05.398 -07 000000576 INF: FPGA: Recv ZSGSRD 35795
17-03-17 22:40:05.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:05.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:05.408 -07 000000478 INF: FPGA: Recv ZSGSRD 35785
17-03-17 22:40:05.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:05.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:05.418 -07 000000512 INF: FPGA: Recv ZSGSRD 35795
17-03-17 22:40:05.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:05.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:05.428 -07 000000478 INF: FPGA: Recv ZSGSRD 35796
17-03-17 22:40:05.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:05.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:05.438 -07 000000623 INF: FPGA: Recv ZSGSRD 35786
17-03-17 22:40:05.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:05.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:05.448 -07 000000478 INF: FPGA: Recv ZSGSRD 35789
17-03-17 22:40:05.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:05.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:05.458 -07 000000486 INF: FPGA: Recv ZSGSRD 35789
17-03-17 22:40:05.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:05.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:05.468 -07 000000502 INF: FPGA: Recv ZSGSRD 35790
17-03-17 22:40:05.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:05.478 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:40:05.478 -07 000000462 INF: FPGA: Recv ZPIEZORD 31783
17-03-17 22:40:05.488 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:05.488 -07 000000610 INF: Z Motor: Piezo is near 47.9 V (nominally 0 to 100 V), expect near 56.7 V, since DAC is at 5.675 V. Piezo Error = -8.8 V.
17-03-17 22:40:05.488 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.2 um, Read 10 ADC samples: Avg = 35791 (-169.4 uncal um), Error = 0.9 uncal um, Median = 35790 (-169.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35785 (-169.3 uncal um), Max = 35796 (-169.4 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 22:40:05.488 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35791, posNoise = 5, negNoise = 6
17-03-17 22:40:05.488 -07 000000610 INF: Z Motor: After move to -0.170236, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:40:05.488 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 22:40:05.488 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:40:05.488 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:40:05.488 -07 000000478 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:40:05.488 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:40:05.488 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:40:05.488 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:40:05.488 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:40:05.488 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:40:05.498 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 22:40:05.498 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:40:05.498 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:40:05.498 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:40:05.498 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 22:40:05.498 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:40:05.498 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 22:40:05.498 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:40:05.508 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 22:40:05.508 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 12 ms.
17-03-17 22:40:05.508 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 22:40:05.508 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 22:40:05.508 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 457 457 220 220 37365 150\n [Camera]
17-03-17 22:40:05.708 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:40:06.168 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 649
17-03-17 22:40:06.168 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 649
17-03-17 22:40:06.168 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:40:06.168 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:40:06.168 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 1475752376, 0x0, 391868352) start.
17-03-17 22:40:06.168 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 649
17-03-17 22:40:06.168 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 649
17-03-17 22:40:06.298 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:40:06.298 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:40:06.298 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-17 22:40:06.358 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37365 842
17-03-17 22:40:06.408 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 66, FrontChillerTemperature: 3.994908,
17-03-17 22:40:06.508 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning grn on 992
17-03-17 22:40:06.548 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 1475752376, 0x0, 391868352) end. Duration was 385 ms.
17-03-17 22:40:06.548 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 22:40:06.548 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:40:06.558 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:40:06.558 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 22:40:06.678 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 377 ms.
17-03-17 22:40:06.678 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-17 22:40:06.678 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:40:06.678 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 22:40:06.688 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 22:40:06.728 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1212
17-03-17 22:40:06.728 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1212
17-03-17 22:40:06.728 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:40:06.728 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1212
17-03-17 22:40:06.728 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1212
17-03-17 22:40:06.728 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:40:06.728 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 656674232, 0x0, 391868352) start.
17-03-17 22:40:06.728 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:40:06.728 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:40:06.728 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-17 22:40:06.918 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP 1404
17-03-17 22:40:06.918 -07 000000608 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:40:06.918 -07 000000610 INF: FPGA: 'CAMDBLSNAP 457 457 220 220 37365 150' command took 2 ms to send, 1407 ms to get response, and 1411 ms overall
17-03-17 22:40:06.918 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 22:40:06.918 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.87841796875, Z-Position -0.170252328776901. ------
17-03-17 22:40:06.928 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:40:06.928 -07 000000458 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.17678 mm
17-03-17 22:40:06.928 -07 000000458 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:40:06.928 -07 000000608 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-17 22:40:06.928 -07 000000608 INF: Y Motor: Moving to 65.7226 mm, started at 64.8784 mm, delta = 0.8442 mm
17-03-17 22:40:06.938 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:40:07.138 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 656674232, 0x0, 391868352) end. Duration was 405 ms.
17-03-17 22:40:07.138 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-17 22:40:07.138 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:40:07.138 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 405 ms.
17-03-17 22:40:07.138 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-17 22:40:07.138 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:40:07.138 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:40:07.138 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 413 ms.
17-03-17 22:40:07.138 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:40:07.148 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 417 ms.
17-03-17 22:40:07.158 -07 000000623 INF: Z Motor: Entering MoveAbsStepped (DAC = 38618, sync = True, waitForSettling = False)
17-03-17 22:40:07.158 -07 000000623 INF: Z Motor: Moving to -0.176782 mm, started at -0.170252 mm, distance = -6.53 um
17-03-17 22:40:07.158 -07 000000623 INF: FPGA: Xmit ZDACW 38618\n [Z Motor]
17-03-17 22:40:07.158 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:40:07.158 -07 000000576 INF: FPGA: Recv YRDPOS 132871
17-03-17 22:40:07.158 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:40:07.158 -07 000000576 INF: FPGA: Recv ZDACW
17-03-17 22:40:07.158 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 216 ms to get response, and 228 ms overall
17-03-17 22:40:07.158 -07 000000608 INF: Y Motor: Encoder = 132871 = motor step 103805.5 = 64.8784 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:40:07.158 -07 000000608 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:40:07.158 -07 000000608 INF: Y Motor: Moving 1351 steps-29
17-03-17 22:40:07.158 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 65. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1042, R2=1070, Total=2112. Warn if over 250 bubbles per interval.
17-03-17 22:40:07.158 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 226 ms to get response, and 230 ms overall
17-03-17 22:40:07.168 -07 000000623 INF: FPGA: 'ZDACW 38618' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:07.168 -07 000000623 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:40:07.168 -07 000000576 INF: FPGA: Recv ZDACR 38618
17-03-17 22:40:07.178 -07 000000608 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:40:07.178 -07 000000623 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:07.178 -07 000000623 INF: Z Motor: MoveAbsStepped took 20 ms (did NOT wait for settling yet))
17-03-17 22:40:07.188 -07 000000512 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:40:07.388 -07 000000623 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:40:07.388 -07 000000512 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 225 ms overall
17-03-17 22:40:07.548 -07 000000623 INF: FPGA: Recv YMVTILE
17-03-17 22:40:07.548 -07 000000608 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 392 ms overall
17-03-17 22:40:07.588 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:40:07.598 -07 000000512 INF: FPGA: Recv YRDPOS 134581
17-03-17 22:40:07.598 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 22:40:07.598 -07 000000608 INF: Y Motor: Encoder = 134581 = motor step 105141.4 = 65.7134 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:40:07.598 -07 000000608 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-17 22:40:07.598 -07 000000608 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 393 ms, distance = 0.844 mm, average velocity = 2.148 mm/sec
17-03-17 22:40:08.548 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:40:08.548 -07 000000512 INF: FPGA: Recv YRDPOS 134581
17-03-17 22:40:08.558 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:08.558 -07 000000608 INF: Y Motor: Encoder = 134581 = motor step 105141.4 = 65.7134 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:40:08.588 -07 000000608 INF: Y Motor: After move to 65.722610, error = -0.009232, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:40:08.588 -07 000000608 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:40:08.588 -07 000000608 INF: Y Motor: Moved to 65.7134 after 1653 ms (table move)
17-03-17 22:40:08.588 -07 000000458 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176782 mm (DAC = 38618)
17-03-17 22:40:08.588 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:08.588 -07 000000512 INF: FPGA: Recv ZSGSRD 36811
17-03-17 22:40:08.598 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 22:40:08.598 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:08.598 -07 000000576 INF: FPGA: Recv ZSGSRD 36813
17-03-17 22:40:08.608 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:08.608 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:08.608 -07 000000623 INF: FPGA: Recv ZSGSRD 36804
17-03-17 22:40:08.618 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:08.618 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:08.618 -07 000000623 INF: FPGA: Recv ZSGSRD 36811
17-03-17 22:40:08.628 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:08.628 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:08.628 -07 000000576 INF: FPGA: Recv ZSGSRD 36804
17-03-17 22:40:08.638 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:08.638 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:08.638 -07 000000512 INF: FPGA: Recv ZSGSRD 36808
17-03-17 22:40:08.648 -07 000000458 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:08.648 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:08.648 -07 000000576 INF: FPGA: Recv ZSGSRD 36810
17-03-17 22:40:08.658 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:08.658 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:08.658 -07 000000608 INF: FPGA: Recv ZSGSRD 36817
17-03-17 22:40:08.668 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:08.668 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:08.668 -07 000000512 INF: FPGA: Recv ZSGSRD 36816
17-03-17 22:40:08.678 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:08.678 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:08.678 -07 000000576 INF: FPGA: Recv ZSGSRD 36803
17-03-17 22:40:08.688 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:08.688 -07 000000458 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:40:08.688 -07 000000512 INF: FPGA: Recv ZPIEZORD 33168
17-03-17 22:40:08.698 -07 000000458 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:08.698 -07 000000458 INF: Z Motor: Piezo is near 50.9 V (nominally 0 to 100 V), expect near 58.9 V, since DAC is at 5.893 V. Piezo Error = -8.1 V.
17-03-17 22:40:08.698 -07 000000458 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.8 um, Read 10 ADC samples: Avg = 36810 (-175.9 uncal um), Error = 0.9 uncal um, Median = 36810 (-175.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36803 (-175.9 uncal um), Max = 36817 (-176.0 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 22:40:08.698 -07 000000458 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36810, posNoise = 7, negNoise = 7
17-03-17 22:40:08.698 -07 000000458 INF: Z Motor: After move to -0.176782, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:40:08.698 -07 000000458 INF: Z Motor: Settle wait time = 1434 ms, measure time = 106 ms (allowed 150 ms), total time = 1540 ms
17-03-17 22:40:08.698 -07 000000458 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 22:40:08.748 -07 000000458 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1814 ms
17-03-17 22:40:08.748 -07 000000458 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:40:08.748 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:40:08.748 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:40:08.748 -07 000000623 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:40:08.748 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:40:08.748 -07 000000458 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:40:08.748 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:40:08.758 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 22:40:08.758 -07 000000458 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:40:08.758 -07 000000458 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 22:40:08.758 -07 000000458 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:40:08.768 -07 000000458 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 22:40:08.768 -07 000000458 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-17 22:40:08.768 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:40:08.808 -07 000000593 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:40:09.008 -07 000000501 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:40:09.008 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:40:09.018 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:40:09.018 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1389170736, 0x0, 559484976) start.
17-03-17 22:40:09.048 -07 000000462 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:40:09.048 -07 000000593 INF: FPGA: Recv CAMSNAP
17-03-17 22:40:09.048 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 284 ms overall
17-03-17 22:40:09.128 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1389170736, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 22:40:09.128 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:40:09.128 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:40:09.128 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 22:40:09.148 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:40:09.148 -07 000000501 INF: Autofocus start
17-03-17 22:40:09.148 -07 000000501 INF: MeasureProfile start
17-03-17 22:40:09.148 -07 000000593 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:40:09.158 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:40:09.158 -07 000000512 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:40:09.158 -07 000000501 INF: MeasureProfile done
17-03-17 22:40:09.158 -07 000000501 INF: X=0  Z correction [um]=-0.0713522
17-03-17 22:40:09.158 -07 000000501 INF: Autofocus finished
17-03-17 22:40:09.358 -07 000000623 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:40:09.358 -07 000000512 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:40:09.358 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.71337890625, Z-position -0.176798600949356. ----------
17-03-17 22:40:09.358 -07 000000610 INF: Cycle	66	Tile	8	Exposure Settings		A	457	G	220	T	220	C	457
17-03-17 22:40:09.368 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37115, sync = True, waitForSettling = True)
17-03-17 22:40:09.368 -07 000000610 INF: Z Motor: Moving to -0.169902 mm, started at -0.176799 mm, distance = 6.90 um
17-03-17 22:40:09.368 -07 000000610 INF: FPGA: Xmit ZDACW 37115\n [Z Motor]
17-03-17 22:40:09.368 -07 000000608 INF: FPGA: Recv ZDACW
17-03-17 22:40:09.378 -07 000000610 INF: FPGA: 'ZDACW 37115' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:40:09.378 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:40:09.378 -07 000000541 INF: FPGA: Recv ZDACR 37115
17-03-17 22:40:09.388 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:09.388 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:40:09.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:09.538 -07 000000608 INF: FPGA: Recv ZSGSRD 35735
17-03-17 22:40:09.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:40:09.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:09.548 -07 000000541 INF: FPGA: Recv ZSGSRD 35740
17-03-17 22:40:09.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:09.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:09.558 -07 000000462 INF: FPGA: Recv ZSGSRD 35736
17-03-17 22:40:09.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:09.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:09.568 -07 000000541 INF: FPGA: Recv ZSGSRD 35736
17-03-17 22:40:09.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:09.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:09.578 -07 000000462 INF: FPGA: Recv ZSGSRD 35736
17-03-17 22:40:09.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:09.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:09.588 -07 000000541 INF: FPGA: Recv ZSGSRD 35740
17-03-17 22:40:09.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:09.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:09.598 -07 000000541 INF: FPGA: Recv ZSGSRD 35740
17-03-17 22:40:09.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:09.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:09.608 -07 000000541 INF: FPGA: Recv ZSGSRD 35736
17-03-17 22:40:09.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:09.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:09.618 -07 000000608 INF: FPGA: Recv ZSGSRD 35737
17-03-17 22:40:09.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:09.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:09.628 -07 000000541 INF: FPGA: Recv ZSGSRD 35740
17-03-17 22:40:09.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:09.638 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:40:09.638 -07 000000478 INF: FPGA: Recv ZPIEZORD 31715
17-03-17 22:40:09.648 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:09.648 -07 000000610 INF: Z Motor: Piezo is near 47.8 V (nominally 0 to 100 V), expect near 56.6 V, since DAC is at 5.663 V. Piezo Error = -8.9 V.
17-03-17 22:40:09.648 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.9 um, Read 10 ADC samples: Avg = 35738 (-169.0 uncal um), Error = 0.9 uncal um, Median = 35736 (-169.0 uncal um), StdDev = 2 (0.0 uncal um), Range = 5 (0.0 uncal um), Min = 35735 (-169.0 uncal um), Max = 35740 (-169.1 uncal um), Pos Noise = 2 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 22:40:09.648 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35738, posNoise = 2, negNoise = 3
17-03-17 22:40:09.648 -07 000000610 INF: Z Motor: After move to -0.169902, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:40:09.648 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 22:40:09.648 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:40:09.648 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:40:09.648 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:40:09.648 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:40:09.648 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:40:09.648 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:40:09.648 -07 000000623 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:40:09.648 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:40:09.648 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:40:09.648 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:40:09.648 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:40:09.648 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:40:09.658 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 22:40:09.658 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:40:09.658 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:40:09.658 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:40:09.668 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 22:40:09.668 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 22:40:09.668 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 22:40:09.668 -07 000000623 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 22:40:09.668 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 457 457 220 220 37292 150\n [Camera]
17-03-17 22:40:09.868 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:40:10.328 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 649
17-03-17 22:40:10.328 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 649
17-03-17 22:40:10.328 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:40:10.328 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:40:10.328 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start.
17-03-17 22:40:10.328 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 649
17-03-17 22:40:10.328 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 649
17-03-17 22:40:10.328 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:40:10.448 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:40:10.448 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-17 22:40:10.518 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37292 842
17-03-17 22:40:10.668 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning grn on 992
17-03-17 22:40:10.718 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 397 ms.
17-03-17 22:40:10.718 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 22:40:10.728 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:40:10.728 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:40:10.728 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 22:40:10.838 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 395 ms.
17-03-17 22:40:10.838 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 22:40:10.838 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:40:10.848 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 22:40:10.848 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 522 ms.
17-03-17 22:40:10.888 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1212
17-03-17 22:40:10.888 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1212
17-03-17 22:40:10.888 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:40:10.888 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1212
17-03-17 22:40:10.888 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1212
17-03-17 22:40:10.888 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:40:10.888 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:40:10.888 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 656674232, 0x0, 418435064) start.
17-03-17 22:40:10.898 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:40:10.898 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-17 22:40:11.078 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP 1406
17-03-17 22:40:11.078 -07 000000576 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:40:11.078 -07 000000610 INF: FPGA: 'CAMDBLSNAP 457 457 220 220 37292 150' command took 2 ms to send, 1406 ms to get response, and 1413 ms overall
17-03-17 22:40:11.078 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 22:40:11.078 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.71337890625, Z-Position -0.169911845533388. ------
17-03-17 22:40:11.088 -07 000000478 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:40:11.088 -07 000000593 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.17632 mm
17-03-17 22:40:11.088 -07 000000593 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:40:11.088 -07 000000541 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:40:11.088 -07 000000462 INF: Z Motor: Entering MoveAbsStepped (DAC = 38516, sync = True, waitForSettling = False)
17-03-17 22:40:11.088 -07 000000462 INF: Z Motor: Moving to -0.176315 mm, started at -0.169912 mm, distance = -6.40 um
17-03-17 22:40:11.088 -07 000000501 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-17 22:40:11.088 -07 000000501 INF: Y Motor: Moving to 66.5526 mm, started at 65.7134 mm, delta = 0.8392 mm
17-03-17 22:40:11.098 -07 000000478 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:40:11.098 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:40:11.098 -07 000000502 INF: FPGA: Recv YRDPOS 134582
17-03-17 22:40:11.108 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 22:40:11.108 -07 000000501 INF: Y Motor: Encoder = 134582 = motor step 105142.2 = 65.7139 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:40:11.108 -07 000000462 INF: FPGA: Xmit ZDACW 38516\n [Z Motor]
17-03-17 22:40:11.108 -07 000000623 INF: FPGA: Recv ZDACW
17-03-17 22:40:11.108 -07 000000501 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:40:11.108 -07 000000501 INF: Y Motor: Moving 1342 steps-19
17-03-17 22:40:11.118 -07 000000462 INF: FPGA: 'ZDACW 38516' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-17 22:40:11.118 -07 000000478 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:40:11.128 -07 000000501 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:40:11.138 -07 000000462 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:40:11.138 -07 000000576 INF: FPGA: Recv ZDACR 38516
17-03-17 22:40:11.148 -07 000000462 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:40:11.148 -07 000000462 INF: Z Motor: MoveAbsStepped took 51 ms (did NOT wait for settling yet))
17-03-17 22:40:11.278 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 656674232, 0x0, 418435064) end. Duration was 382 ms.
17-03-17 22:40:11.278 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-17 22:40:11.278 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:40:11.278 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 22:40:11.288 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 22:40:11.288 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 393 ms.
17-03-17 22:40:11.288 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 22:40:11.288 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:40:11.298 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:40:11.298 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 22:40:11.318 -07 000000502 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:40:11.318 -07 000000478 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-17 22:40:11.498 -07 000000438 INF: FPGA: Recv YMVTILE
17-03-17 22:40:11.498 -07 000000501 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 392 ms overall
17-03-17 22:40:11.538 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:40:11.548 -07 000000512 INF: FPGA: Recv YRDPOS 136271
17-03-17 22:40:11.548 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:40:11.548 -07 000000501 INF: Y Motor: Encoder = 136271 = motor step 106461.7 = 66.5386 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:40:11.548 -07 000000501 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-17 22:40:11.548 -07 000000501 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 392 ms, distance = 0.839 mm, average velocity = 2.141 mm/sec
17-03-17 22:40:11.768 -07 000000458 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 66, FrontChillerTemperature: 3.993549,
17-03-17 22:40:11.998 -07 000000458 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:40:11.998 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 65. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1042, R2=1070, Total=2112. Warn if over 250 bubbles per interval.
17-03-17 22:40:12.498 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:40:12.498 -07 000000502 INF: FPGA: Recv YRDPOS 136271
17-03-17 22:40:12.508 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:40:12.508 -07 000000501 INF: Y Motor: Encoder = 136271 = motor step 106461.7 = 66.5386 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:40:12.528 -07 000000501 INF: Y Motor: After move to 66.552605, error = -0.014030, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:40:12.528 -07 000000501 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:40:12.528 -07 000000501 INF: Y Motor: Moved to 66.5386 after 1438 ms (table move)
17-03-17 22:40:12.538 -07 000000593 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176315 mm (DAC = 38516)
17-03-17 22:40:12.538 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:12.538 -07 000000501 INF: FPGA: Recv ZSGSRD 36734
17-03-17 22:40:12.548 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:40:12.548 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:12.548 -07 000000623 INF: FPGA: Recv ZSGSRD 36736
17-03-17 22:40:12.558 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:12.558 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:12.558 -07 000000458 INF: FPGA: Recv ZSGSRD 36734
17-03-17 22:40:12.568 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:12.568 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:12.568 -07 000000623 INF: FPGA: Recv ZSGSRD 36738
17-03-17 22:40:12.578 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:12.578 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:12.578 -07 000000502 INF: FPGA: Recv ZSGSRD 36727
17-03-17 22:40:12.588 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:12.588 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:12.588 -07 000000501 INF: FPGA: Recv ZSGSRD 36727
17-03-17 22:40:12.598 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:12.598 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:12.598 -07 000000415 INF: FPGA: Recv ZSGSRD 36733
17-03-17 22:40:12.608 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:12.608 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:12.608 -07 000000458 INF: FPGA: Recv ZSGSRD 36730
17-03-17 22:40:12.618 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:12.618 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:12.618 -07 000000623 INF: FPGA: Recv ZSGSRD 36734
17-03-17 22:40:12.628 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:12.628 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:12.628 -07 000000623 INF: FPGA: Recv ZSGSRD 36739
17-03-17 22:40:12.638 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:12.638 -07 000000593 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:40:12.638 -07 000000415 INF: FPGA: Recv ZPIEZORD 33054
17-03-17 22:40:12.648 -07 000000593 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:12.648 -07 000000593 INF: Z Motor: Piezo is near 50.6 V (nominally 0 to 100 V), expect near 58.8 V, since DAC is at 5.877 V. Piezo Error = -8.2 V.
17-03-17 22:40:12.648 -07 000000593 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.3 um, Read 10 ADC samples: Avg = 36733 (-175.4 uncal um), Error = 0.9 uncal um, Median = 36734 (-175.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36727 (-175.4 uncal um), Max = 36739 (-175.5 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 22:40:12.648 -07 000000593 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36733, posNoise = 6, negNoise = 6
17-03-17 22:40:12.648 -07 000000593 INF: Z Motor: After move to -0.176315, error = 0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:40:12.648 -07 000000593 INF: Z Motor: Settle wait time = 1441 ms, measure time = 111 ms (allowed 150 ms), total time = 1552 ms
17-03-17 22:40:12.648 -07 000000593 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-17 22:40:12.688 -07 000000593 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1597 ms
17-03-17 22:40:12.688 -07 000000593 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:40:12.688 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:40:12.688 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:40:12.688 -07 000000415 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:40:12.688 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:40:12.688 -07 000000593 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:40:12.688 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:40:12.688 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:40:12.688 -07 000000593 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:40:12.688 -07 000000593 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:40:12.688 -07 000000593 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:40:12.708 -07 000000593 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 22:40:12.708 -07 000000593 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 22:40:12.708 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:40:12.758 -07 000000502 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:40:12.948 -07 000000415 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:40:12.948 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:40:12.958 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:40:12.958 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1389170736, 0x0, 559484976) start.
17-03-17 22:40:12.988 -07 000000458 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:40:12.998 -07 000000502 INF: FPGA: Recv CAMSNAP
17-03-17 22:40:12.998 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 284 ms overall
17-03-17 22:40:13.068 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1389170736, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 22:40:13.068 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:40:13.068 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 22:40:13.068 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 22:40:13.098 -07 000000458 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:40:13.098 -07 000000501 INF: Autofocus start
17-03-17 22:40:13.098 -07 000000501 INF: MeasureProfile start
17-03-17 22:40:13.098 -07 000000415 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:40:13.108 -07 000000458 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:40:13.108 -07 000000458 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:40:13.108 -07 000000501 INF: MeasureProfile done
17-03-17 22:40:13.108 -07 000000501 INF: X=0  Z correction [um]=-0.0713522
17-03-17 22:40:13.108 -07 000000501 INF: Autofocus finished
17-03-17 22:40:13.308 -07 000000608 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:40:13.308 -07 000000458 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:40:13.308 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.53857421875, Z-position -0.17630393661444. ----------
17-03-17 22:40:13.308 -07 000000610 INF: Cycle	66	Tile	9	Exposure Settings		A	457	G	220	T	220	C	457
17-03-17 22:40:13.318 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37013, sync = True, waitForSettling = True)
17-03-17 22:40:13.318 -07 000000610 INF: Z Motor: Moving to -0.169435 mm, started at -0.176304 mm, distance = 6.87 um
17-03-17 22:40:13.318 -07 000000610 INF: FPGA: Xmit ZDACW 37013\n [Z Motor]
17-03-17 22:40:13.318 -07 000000438 INF: FPGA: Recv ZDACW
17-03-17 22:40:13.328 -07 000000610 INF: FPGA: 'ZDACW 37013' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:13.328 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:40:13.328 -07 000000576 INF: FPGA: Recv ZDACR 37013
17-03-17 22:40:13.338 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:13.338 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:40:13.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:13.488 -07 000000501 INF: FPGA: Recv ZSGSRD 35665
17-03-17 22:40:13.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:40:13.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:13.498 -07 000000458 INF: FPGA: Recv ZSGSRD 35662
17-03-17 22:40:13.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:13.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:13.508 -07 000000501 INF: FPGA: Recv ZSGSRD 35665
17-03-17 22:40:13.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:13.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:13.518 -07 000000458 INF: FPGA: Recv ZSGSRD 35668
17-03-17 22:40:13.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:13.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:13.528 -07 000000593 INF: FPGA: Recv ZSGSRD 35663
17-03-17 22:40:13.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:13.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:13.538 -07 000000501 INF: FPGA: Recv ZSGSRD 35667
17-03-17 22:40:13.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:13.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:13.548 -07 000000593 INF: FPGA: Recv ZSGSRD 35663
17-03-17 22:40:13.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:13.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:13.558 -07 000000608 INF: FPGA: Recv ZSGSRD 35668
17-03-17 22:40:13.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:13.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:13.568 -07 000000458 INF: FPGA: Recv ZSGSRD 35665
17-03-17 22:40:13.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:13.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:13.578 -07 000000608 INF: FPGA: Recv ZSGSRD 35658
17-03-17 22:40:13.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:13.588 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:40:13.588 -07 000000458 INF: FPGA: Recv ZPIEZORD 31629
17-03-17 22:40:13.598 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:13.598 -07 000000610 INF: Z Motor: Piezo is near 47.6 V (nominally 0 to 100 V), expect near 56.5 V, since DAC is at 5.648 V. Piezo Error = -8.9 V.
17-03-17 22:40:13.598 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.4 um, Read 10 ADC samples: Avg = 35664 (-168.6 uncal um), Error = 0.9 uncal um, Median = 35665 (-168.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35658 (-168.5 uncal um), Max = 35668 (-168.6 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 22:40:13.598 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35664, posNoise = 4, negNoise = 6
17-03-17 22:40:13.598 -07 000000610 INF: Z Motor: After move to -0.169435, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:40:13.598 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 22:40:13.598 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:40:13.598 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:40:13.598 -07 000000415 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:40:13.598 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:40:13.598 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:40:13.598 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:40:13.598 -07 000000623 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:40:13.598 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:40:13.598 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 22:40:13.598 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:40:13.598 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:40:13.598 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:40:13.608 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:40:13.608 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:40:13.608 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 22:40:13.608 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:40:13.618 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 12 ms.
17-03-17 22:40:13.618 -07 000000623 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 22:40:13.618 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-17 22:40:13.618 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 22:40:13.618 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 457 457 220 220 37190 150\n [Camera]
17-03-17 22:40:13.818 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:40:14.278 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 649
17-03-17 22:40:14.278 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 649
17-03-17 22:40:14.278 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:40:14.278 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:40:14.278 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 1448606536, 0x0, 391868352) start.
17-03-17 22:40:14.278 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 649
17-03-17 22:40:14.278 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 649
17-03-17 22:40:14.288 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:40:14.288 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:40:14.288 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 1484028800, 0x0, 418435064) start.
17-03-17 22:40:14.468 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37190 842
17-03-17 22:40:14.618 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning grn on 992
17-03-17 22:40:14.668 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 1484028800, 0x0, 418435064) end. Duration was 381 ms.
17-03-17 22:40:14.668 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-17 22:40:14.668 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:40:14.668 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 1448606536, 0x0, 391868352) end. Duration was 384 ms.
17-03-17 22:40:14.668 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 22:40:14.668 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:40:14.668 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 22:40:14.668 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 22:40:14.668 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 22:40:14.678 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 22:40:14.838 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1212
17-03-17 22:40:14.838 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1212
17-03-17 22:40:14.838 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:40:14.948 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1212
17-03-17 22:40:14.958 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1212
17-03-17 22:40:14.958 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:40:14.958 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:40:14.958 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) start.
17-03-17 22:40:14.958 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:40:14.958 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) start.
17-03-17 22:40:15.028 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP 1405
17-03-17 22:40:15.028 -07 000000593 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:40:15.028 -07 000000610 INF: FPGA: 'CAMDBLSNAP 457 457 220 220 37190 150' command took 2 ms to send, 1409 ms to get response, and 1412 ms overall
17-03-17 22:40:15.038 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 22:40:15.038 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.53857421875, Z-Position -0.169436453834898. ------
17-03-17 22:40:15.038 -07 000000623 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:40:15.038 -07 000000438 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.17626 mm
17-03-17 22:40:15.038 -07 000000438 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:40:15.038 -07 000000608 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-17 22:40:15.038 -07 000000593 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:40:15.038 -07 000000608 INF: Y Motor: Moving to 67.3826 mm, started at 66.5386 mm, delta = 0.8440 mm
17-03-17 22:40:15.038 -07 000000501 INF: Z Motor: Entering MoveAbsStepped (DAC = 38504, sync = True, waitForSettling = False)
17-03-17 22:40:15.038 -07 000000501 INF: Z Motor: Moving to -0.176260 mm, started at -0.169436 mm, distance = -6.82 um
17-03-17 22:40:15.048 -07 000000623 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 22:40:15.048 -07 000000501 INF: FPGA: Xmit ZDACW 38504\n [Z Motor]
17-03-17 22:40:15.048 -07 000000593 INF: FPGA: Recv ZDACW
17-03-17 22:40:15.058 -07 000000501 INF: FPGA: 'ZDACW 38504' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:40:15.058 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:40:15.058 -07 000000486 INF: FPGA: Recv YRDPOS 136272
17-03-17 22:40:15.068 -07 000000623 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:40:15.068 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 20 ms overall
17-03-17 22:40:15.068 -07 000000608 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:40:15.068 -07 000000608 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:40:15.068 -07 000000608 INF: Y Motor: Moving 1350 steps-29
17-03-17 22:40:15.078 -07 000000501 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:40:15.078 -07 000000415 INF: FPGA: Recv ZDACR 38504
17-03-17 22:40:15.088 -07 000000501 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:40:15.088 -07 000000501 INF: Z Motor: MoveAbsStepped took 40 ms (did NOT wait for settling yet))
17-03-17 22:40:15.088 -07 000000608 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:40:15.268 -07 000000462 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:40:15.268 -07 000000623 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 22:40:15.358 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) end. Duration was 395 ms.
17-03-17 22:40:15.358 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 22:40:15.358 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:40:15.358 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) end. Duration was 399 ms.
17-03-17 22:40:15.358 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 22:40:15.358 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:40:15.358 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:40:15.358 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:40:15.358 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 517 ms.
17-03-17 22:40:15.368 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-17 22:40:15.468 -07 000000486 INF: FPGA: Recv YMVTILE
17-03-17 22:40:15.468 -07 000000608 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 392 ms overall
17-03-17 22:40:15.498 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:40:15.508 -07 000000541 INF: FPGA: Recv YRDPOS 137977
17-03-17 22:40:15.508 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 22:40:15.508 -07 000000608 INF: Y Motor: Encoder = 137977 = motor step 107794.5 = 67.3716 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:40:15.508 -07 000000608 INF: Y Motor: Position error before settling (table move) = -23 encoder counts (-0.011 mm)
17-03-17 22:40:15.508 -07 000000608 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 393 ms, distance = 0.844 mm, average velocity = 2.148 mm/sec
17-03-17 22:40:16.458 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:40:16.458 -07 000000541 INF: FPGA: Recv YRDPOS 137977
17-03-17 22:40:16.468 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:40:16.468 -07 000000608 INF: Y Motor: Encoder = 137977 = motor step 107794.5 = 67.3716 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:40:16.488 -07 000000608 INF: Y Motor: After move to 67.382607, error = -0.011024, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:40:16.488 -07 000000608 INF: Y Motor: Position error after settling (table move) = -23 encoder counts (-0.011 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:40:16.488 -07 000000608 INF: Y Motor: Moved to 67.3716 after 1446 ms (table move)
17-03-17 22:40:16.488 -07 000000438 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176260 mm (DAC = 38504)
17-03-17 22:40:16.488 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:16.498 -07 000000502 INF: FPGA: Recv ZSGSRD 36734
17-03-17 22:40:16.498 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 22:40:16.498 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:16.498 -07 000000623 INF: FPGA: Recv ZSGSRD 36723
17-03-17 22:40:16.508 -07 000000438 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:40:16.508 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:16.508 -07 000000623 INF: FPGA: Recv ZSGSRD 36728
17-03-17 22:40:16.518 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:16.518 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:16.518 -07 000000623 INF: FPGA: Recv ZSGSRD 36731
17-03-17 22:40:16.528 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:16.528 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:16.528 -07 000000502 INF: FPGA: Recv ZSGSRD 36730
17-03-17 22:40:16.538 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:16.538 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:16.538 -07 000000502 INF: FPGA: Recv ZSGSRD 36727
17-03-17 22:40:16.548 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:16.548 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:16.548 -07 000000502 INF: FPGA: Recv ZSGSRD 36726
17-03-17 22:40:16.558 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:16.558 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:16.558 -07 000000502 INF: FPGA: Recv ZSGSRD 36722
17-03-17 22:40:16.568 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:16.568 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:16.568 -07 000000458 INF: FPGA: Recv ZSGSRD 36724
17-03-17 22:40:16.578 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:16.578 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:16.578 -07 000000458 INF: FPGA: Recv ZSGSRD 36728
17-03-17 22:40:16.588 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:16.588 -07 000000438 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:40:16.588 -07 000000623 INF: FPGA: Recv ZPIEZORD 33042
17-03-17 22:40:16.598 -07 000000438 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:16.598 -07 000000438 INF: Z Motor: Piezo is near 50.6 V (nominally 0 to 100 V), expect near 58.8 V, since DAC is at 5.875 V. Piezo Error = -8.2 V.
17-03-17 22:40:16.598 -07 000000438 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.3 um, Read 10 ADC samples: Avg = 36727 (-175.4 uncal um), Error = 0.9 uncal um, Median = 36728 (-175.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36722 (-175.3 uncal um), Max = 36734 (-175.4 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 22:40:16.598 -07 000000438 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36727, posNoise = 7, negNoise = 5
17-03-17 22:40:16.598 -07 000000438 INF: Z Motor: After move to -0.176260, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:40:16.598 -07 000000438 INF: Z Motor: Settle wait time = 1448 ms, measure time = 102 ms (allowed 150 ms), total time = 1550 ms
17-03-17 22:40:16.598 -07 000000438 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 22:40:16.648 -07 000000438 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1604 ms
17-03-17 22:40:16.648 -07 000000438 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:40:16.648 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:40:16.648 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:40:16.648 -07 000000415 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:40:16.648 -07 000000623 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:40:16.648 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:40:16.648 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:40:16.648 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:40:16.648 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:40:16.658 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 22:40:16.658 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:40:16.668 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 22:40:16.668 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-17 22:40:16.668 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:40:16.718 -07 000000501 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:40:16.918 -07 000000501 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:40:16.918 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:40:16.918 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:40:16.918 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1389170736, 0x0, 559484976) start.
17-03-17 22:40:16.958 -07 000000501 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:40:16.958 -07 000000576 INF: FPGA: Recv CAMSNAP
17-03-17 22:40:16.958 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 284 ms overall
17-03-17 22:40:16.998 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:40:17.038 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1389170736, 0x0, 559484976) end. Duration was 124 ms.
17-03-17 22:40:17.038 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:40:17.038 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:40:17.038 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 127 ms.
17-03-17 22:40:17.048 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 65. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1042, R2=1070, Total=2112. Warn if over 250 bubbles per interval.
17-03-17 22:40:17.058 -07 000000438 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:40:17.058 -07 000000501 INF: Autofocus start
17-03-17 22:40:17.058 -07 000000501 INF: MeasureProfile start
17-03-17 22:40:17.068 -07 000000623 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:40:17.068 -07 000000438 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 6 ms overall
17-03-17 22:40:17.068 -07 000000438 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:40:17.068 -07 000000501 INF: MeasureProfile done
17-03-17 22:40:17.068 -07 000000501 INF: X=0  Z correction [um]=-0.0713522
17-03-17 22:40:17.068 -07 000000501 INF: Autofocus finished
17-03-17 22:40:17.138 -07 000000623 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 66, FrontChillerTemperature: 4.000345,
17-03-17 22:40:17.268 -07 000000501 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:40:17.268 -07 000000438 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-17 22:40:17.268 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.37158203125, Z-position -0.17626539134159. ----------
17-03-17 22:40:17.278 -07 000000610 INF: Cycle	66	Tile	10	Exposure Settings		A	457	G	220	T	220	C	457
17-03-17 22:40:17.278 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37001, sync = True, waitForSettling = True)
17-03-17 22:40:17.278 -07 000000610 INF: Z Motor: Moving to -0.169380 mm, started at -0.176265 mm, distance = 6.89 um
17-03-17 22:40:17.278 -07 000000610 INF: FPGA: Xmit ZDACW 37001\n [Z Motor]
17-03-17 22:40:17.278 -07 000000438 INF: FPGA: Recv ZDACW
17-03-17 22:40:17.288 -07 000000610 INF: FPGA: 'ZDACW 37001' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:40:17.288 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:40:17.288 -07 000000501 INF: FPGA: Recv ZDACR 37001
17-03-17 22:40:17.298 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:17.298 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:40:17.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:17.458 -07 000000502 INF: FPGA: Recv ZSGSRD 35658
17-03-17 22:40:17.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:40:17.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:17.468 -07 000000438 INF: FPGA: Recv ZSGSRD 35657
17-03-17 22:40:17.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:17.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:17.488 -07 000000623 INF: FPGA: Recv ZSGSRD 35655
17-03-17 22:40:17.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:40:17.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:17.498 -07 000000438 INF: FPGA: Recv ZSGSRD 35656
17-03-17 22:40:17.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:17.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:17.518 -07 000000576 INF: FPGA: Recv ZSGSRD 35658
17-03-17 22:40:17.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:40:17.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:17.528 -07 000000415 INF: FPGA: Recv ZSGSRD 35655
17-03-17 22:40:17.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:17.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:17.548 -07 000000576 INF: FPGA: Recv ZSGSRD 35657
17-03-17 22:40:17.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:40:17.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:17.558 -07 000000415 INF: FPGA: Recv ZSGSRD 35651
17-03-17 22:40:17.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:17.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:17.578 -07 000000623 INF: FPGA: Recv ZSGSRD 35663
17-03-17 22:40:17.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:40:17.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:17.588 -07 000000576 INF: FPGA: Recv ZSGSRD 35655
17-03-17 22:40:17.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:17.598 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:40:17.598 -07 000000623 INF: FPGA: Recv ZPIEZORD 31627
17-03-17 22:40:17.608 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:17.608 -07 000000610 INF: Z Motor: Piezo is near 47.6 V (nominally 0 to 100 V), expect near 56.5 V, since DAC is at 5.646 V. Piezo Error = -8.9 V.
17-03-17 22:40:17.608 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.4 um, Read 10 ADC samples: Avg = 35656 (-168.5 uncal um), Error = 0.9 uncal um, Median = 35656 (-168.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35651 (-168.5 uncal um), Max = 35663 (-168.6 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 22:40:17.608 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35656, posNoise = 7, negNoise = 5
17-03-17 22:40:17.608 -07 000000610 INF: Z Motor: After move to -0.169380, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:40:17.608 -07 000000610 INF: Z Motor: MoveAbsStepped took 328 ms)
17-03-17 22:40:17.608 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:40:17.608 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:40:17.608 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:40:17.608 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:40:17.608 -07 000000415 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:40:17.608 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:40:17.608 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:40:17.608 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:40:17.608 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:40:17.608 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:40:17.608 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:40:17.608 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:40:17.618 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:40:17.618 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:40:17.618 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:40:17.618 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:40:17.618 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 22:40:17.618 -07 000000415 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 22:40:17.628 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 22:40:17.628 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 22:40:17.628 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 457 457 220 220 37178 150\n [Camera]
17-03-17 22:40:17.828 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:40:18.288 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 649
17-03-17 22:40:18.288 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 649
17-03-17 22:40:18.288 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:40:18.288 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 649
17-03-17 22:40:18.288 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 649
17-03-17 22:40:18.288 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:40:18.288 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1082280040, 0x0, 391868352) start.
17-03-17 22:40:18.288 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:40:18.288 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:40:18.288 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 656674232, 0x0, 418435064) start.
17-03-17 22:40:18.478 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37178 842
17-03-17 22:40:18.628 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning grn on 992
17-03-17 22:40:18.668 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1082280040, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 22:40:18.668 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 22:40:18.668 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:40:18.678 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 656674232, 0x0, 418435064) end. Duration was 384 ms.
17-03-17 22:40:18.678 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:40:18.678 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 22:40:18.678 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-17 22:40:18.678 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:40:18.678 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:40:18.688 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 22:40:18.848 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1212
17-03-17 22:40:18.848 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1212
17-03-17 22:40:18.848 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:40:18.968 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1212
17-03-17 22:40:18.968 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1212
17-03-17 22:40:18.968 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:40:18.968 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:40:18.968 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 1444201232, 0x0, 391868352) start.
17-03-17 22:40:18.968 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:40:18.968 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) start.
17-03-17 22:40:19.038 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP 1405
17-03-17 22:40:19.038 -07 000000501 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:40:19.038 -07 000000610 INF: FPGA: 'CAMDBLSNAP 457 457 220 220 37178 150' command took 2 ms to send, 1404 ms to get response, and 1412 ms overall
17-03-17 22:40:19.038 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 22:40:19.038 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.37158203125, Z-Position -0.169385060137764. ------
17-03-17 22:40:19.038 -07 000000438 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:40:19.038 -07 000000415 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.17567 mm
17-03-17 22:40:19.038 -07 000000415 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:40:19.048 -07 000000512 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-17 22:40:19.048 -07 000000512 INF: Y Motor: Moving to 68.2126 mm, started at 67.3716 mm, delta = 0.8410 mm
17-03-17 22:40:19.048 -07 000000501 INF: Z Motor: Entering MoveAbsStepped (DAC = 38376, sync = True, waitForSettling = False)
17-03-17 22:40:19.048 -07 000000501 INF: Z Motor: Moving to -0.175674 mm, started at -0.169385 mm, distance = -6.29 um
17-03-17 22:40:19.048 -07 000000593 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:40:19.048 -07 000000438 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 3 ms to get response, and 4 ms overall
17-03-17 22:40:19.048 -07 000000501 INF: FPGA: Xmit ZDACW 38376\n [Z Motor]
17-03-17 22:40:19.048 -07 000000593 INF: FPGA: Recv ZDACW
17-03-17 22:40:19.058 -07 000000501 INF: FPGA: 'ZDACW 38376' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:40:19.058 -07 000000501 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:40:19.058 -07 000000593 INF: FPGA: Recv ZDACR 38376
17-03-17 22:40:19.068 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:40:19.068 -07 000000501 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:19.068 -07 000000501 INF: Z Motor: MoveAbsStepped took 17 ms (did NOT wait for settling yet))
17-03-17 22:40:19.068 -07 000000593 INF: FPGA: Recv YRDPOS 137977
17-03-17 22:40:19.078 -07 000000438 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:40:19.078 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-17 22:40:19.078 -07 000000512 INF: Y Motor: Encoder = 137977 = motor step 107794.5 = 67.3716 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:40:19.078 -07 000000512 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:40:19.078 -07 000000512 INF: Y Motor: Moving 1346 steps-23
17-03-17 22:40:19.088 -07 000000512 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:40:19.278 -07 000000541 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:40:19.278 -07 000000438 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 228 ms overall
17-03-17 22:40:19.358 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) end. Duration was 385 ms.
17-03-17 22:40:19.358 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-17 22:40:19.358 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:40:19.358 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 1444201232, 0x0, 391868352) end. Duration was 391 ms.
17-03-17 22:40:19.358 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 22:40:19.358 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:40:19.358 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:40:19.358 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:40:19.358 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 515 ms.
17-03-17 22:40:19.368 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 22:40:19.468 -07 000000541 INF: FPGA: Recv YMVTILE
17-03-17 22:40:19.468 -07 000000512 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 390 ms overall
17-03-17 22:40:19.518 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:40:19.518 -07 000000593 INF: FPGA: Recv YRDPOS 139683
17-03-17 22:40:19.528 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:40:19.528 -07 000000512 INF: Y Motor: Encoder = 139683 = motor step 109127.3 = 68.2046 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:40:19.528 -07 000000512 INF: Y Motor: Position error before settling (table move) = -16 encoder counts (-0.008 mm)
17-03-17 22:40:19.528 -07 000000512 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 390 ms, distance = 0.841 mm, average velocity = 2.156 mm/sec
17-03-17 22:40:20.478 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:40:20.478 -07 000000462 INF: FPGA: Recv YRDPOS 139684
17-03-17 22:40:20.488 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:40:20.488 -07 000000512 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:40:20.508 -07 000000512 INF: Y Motor: After move to 68.212608, error = -0.007530, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:40:20.508 -07 000000512 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 22:40:20.508 -07 000000512 INF: Y Motor: Moved to 68.2051 after 1461 ms (table move)
17-03-17 22:40:20.508 -07 000000415 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175674 mm (DAC = 38376)
17-03-17 22:40:20.508 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:20.518 -07 000000458 INF: FPGA: Recv ZSGSRD 36634
17-03-17 22:40:20.518 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 22:40:20.518 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:20.518 -07 000000512 INF: FPGA: Recv ZSGSRD 36637
17-03-17 22:40:20.528 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:20.528 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:20.528 -07 000000502 INF: FPGA: Recv ZSGSRD 36640
17-03-17 22:40:20.538 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:20.538 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:20.538 -07 000000576 INF: FPGA: Recv ZSGSRD 36632
17-03-17 22:40:20.548 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:20.548 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:20.548 -07 000000459 INF: FPGA: Recv ZSGSRD 36628
17-03-17 22:40:20.558 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:20.558 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:20.558 -07 000000512 INF: FPGA: Recv ZSGSRD 36636
17-03-17 22:40:20.568 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:20.568 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:20.568 -07 000000459 INF: FPGA: Recv ZSGSRD 36633
17-03-17 22:40:20.578 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:20.578 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:20.578 -07 000000501 INF: FPGA: Recv ZSGSRD 36644
17-03-17 22:40:20.588 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:20.588 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:20.588 -07 000000459 INF: FPGA: Recv ZSGSRD 36642
17-03-17 22:40:20.598 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:20.598 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:20.598 -07 000000478 INF: FPGA: Recv ZSGSRD 36632
17-03-17 22:40:20.608 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:20.608 -07 000000415 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:40:20.608 -07 000000459 INF: FPGA: Recv ZPIEZORD 32936
17-03-17 22:40:20.618 -07 000000415 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:20.618 -07 000000415 INF: Z Motor: Piezo is near 50.4 V (nominally 0 to 100 V), expect near 58.6 V, since DAC is at 5.856 V. Piezo Error = -8.2 V.
17-03-17 22:40:20.618 -07 000000415 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.7 um, Read 10 ADC samples: Avg = 36636 (-174.8 uncal um), Error = 0.9 uncal um, Median = 36635 (-174.8 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 36628 (-174.7 uncal um), Max = 36644 (-174.8 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 22:40:20.618 -07 000000415 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36636, posNoise = 8, negNoise = 8
17-03-17 22:40:20.618 -07 000000415 INF: Z Motor: After move to -0.175674, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:40:20.618 -07 000000415 INF: Z Motor: Settle wait time = 1464 ms, measure time = 104 ms (allowed 150 ms), total time = 1568 ms
17-03-17 22:40:20.618 -07 000000415 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 22:40:20.668 -07 000000415 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1620 ms
17-03-17 22:40:20.668 -07 000000415 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:40:20.668 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:40:20.668 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:40:20.668 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:40:20.668 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:40:20.668 -07 000000459 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:40:20.668 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:40:20.668 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:40:20.668 -07 000000459 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:40:20.678 -07 000000459 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 22:40:20.678 -07 000000459 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:40:20.688 -07 000000459 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 22:40:20.688 -07 000000459 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 22:40:20.688 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:40:20.738 -07 000000541 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:40:20.938 -07 000000478 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:40:20.938 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:40:20.938 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:40:20.938 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1389170736, 0x0, 559484976) start.
17-03-17 22:40:20.968 -07 000000458 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:40:20.978 -07 000000512 INF: FPGA: Recv CAMSNAP
17-03-17 22:40:20.978 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 284 ms overall
17-03-17 22:40:21.048 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1389170736, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 22:40:21.048 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:40:21.048 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:40:21.048 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 22:40:21.078 -07 000000415 INF: Autofocus start
17-03-17 22:40:21.078 -07 000000415 INF: MeasureProfile start
17-03-17 22:40:21.078 -07 000000478 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:40:21.078 -07 000000459 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:40:21.088 -07 000000478 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:40:21.088 -07 000000478 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:40:21.088 -07 000000415 INF: MeasureProfile done
17-03-17 22:40:21.088 -07 000000415 INF: X=48  Z correction [um]=0.1739867
17-03-17 22:40:21.088 -07 000000415 INF: Autofocus finished
17-03-17 22:40:21.288 -07 000000593 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:40:21.288 -07 000000478 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:40:21.288 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.205078125, Z-position -0.175680788036689. ----------
17-03-17 22:40:21.288 -07 000000610 INF: Cycle	66	Tile	11	Exposure Settings		A	457	G	220	T	220	C	457
17-03-17 22:40:21.298 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36926, sync = True, waitForSettling = True)
17-03-17 22:40:21.298 -07 000000610 INF: Z Motor: Moving to -0.169036 mm, started at -0.175681 mm, distance = 6.64 um
17-03-17 22:40:21.298 -07 000000610 INF: FPGA: Xmit ZDACW 36926\n [Z Motor]
17-03-17 22:40:21.298 -07 000000415 INF: FPGA: Recv ZDACW
17-03-17 22:40:21.308 -07 000000610 INF: FPGA: 'ZDACW 36926' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:21.308 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:40:21.308 -07 000000502 INF: FPGA: Recv ZDACR 36926
17-03-17 22:40:21.318 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:21.318 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:40:21.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:21.468 -07 000000415 INF: FPGA: Recv ZSGSRD 35607
17-03-17 22:40:21.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:40:21.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:21.478 -07 000000502 INF: FPGA: Recv ZSGSRD 35601
17-03-17 22:40:21.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:21.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:21.488 -07 000000593 INF: FPGA: Recv ZSGSRD 35603
17-03-17 22:40:21.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:21.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:21.498 -07 000000478 INF: FPGA: Recv ZSGSRD 35601
17-03-17 22:40:21.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:21.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:21.508 -07 000000478 INF: FPGA: Recv ZSGSRD 35605
17-03-17 22:40:21.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:40:21.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:21.518 -07 000000502 INF: FPGA: Recv ZSGSRD 35610
17-03-17 22:40:21.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:21.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:21.528 -07 000000478 INF: FPGA: Recv ZSGSRD 35604
17-03-17 22:40:21.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:21.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:21.538 -07 000000593 INF: FPGA: Recv ZSGSRD 35598
17-03-17 22:40:21.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:21.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:21.548 -07 000000541 INF: FPGA: Recv ZSGSRD 35603
17-03-17 22:40:21.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:21.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:21.558 -07 000000502 INF: FPGA: Recv ZSGSRD 35602
17-03-17 22:40:21.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:21.568 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:40:21.568 -07 000000541 INF: FPGA: Recv ZPIEZORD 31546
17-03-17 22:40:21.578 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:21.578 -07 000000610 INF: Z Motor: Piezo is near 47.4 V (nominally 0 to 100 V), expect near 56.3 V, since DAC is at 5.635 V. Piezo Error = -9.0 V.
17-03-17 22:40:21.578 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.0 um, Read 10 ADC samples: Avg = 35603 (-168.2 uncal um), Error = 0.9 uncal um, Median = 35603 (-168.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35598 (-168.1 uncal um), Max = 35610 (-168.2 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 22:40:21.578 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35603, posNoise = 7, negNoise = 5
17-03-17 22:40:21.578 -07 000000610 INF: Z Motor: After move to -0.169036, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:40:21.578 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 22:40:21.578 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:40:21.578 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:40:21.578 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:40:21.578 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:40:21.578 -07 000000593 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:40:21.578 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:40:21.578 -07 000000541 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:40:21.578 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:40:21.578 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 22:40:21.578 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:40:21.578 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:40:21.578 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:40:21.588 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:40:21.588 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:40:21.588 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:40:21.588 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:40:21.598 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 22:40:21.598 -07 000000593 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 22:40:21.598 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 22:40:21.598 -07 000000541 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 22:40:21.598 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 457 457 220 220 37103 150\n [Camera]
17-03-17 22:40:21.798 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:40:21.998 -07 000000478 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:40:21.998 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 65. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1042, R2=1070, Total=2112. Warn if over 250 bubbles per interval.
17-03-17 22:40:22.258 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 649
17-03-17 22:40:22.258 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 649
17-03-17 22:40:22.258 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:40:22.258 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:40:22.258 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1479623496, 0x0, 391868352) start.
17-03-17 22:40:22.258 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 649
17-03-17 22:40:22.258 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 649
17-03-17 22:40:22.258 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:40:22.258 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:40:22.258 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-17 22:40:22.448 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37103 842
17-03-17 22:40:22.508 -07 000000478 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 66, FrontChillerTemperature: 3.993549,
17-03-17 22:40:22.598 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP turning grn on 992
17-03-17 22:40:22.638 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1479623496, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 22:40:22.638 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 22:40:22.638 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:40:22.638 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 22:40:22.638 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-17 22:40:22.638 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:40:22.638 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:40:22.638 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 22:40:22.638 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:40:22.648 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 22:40:22.818 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1212
17-03-17 22:40:22.818 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1212
17-03-17 22:40:22.818 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:40:22.818 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:40:22.818 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start.
17-03-17 22:40:22.818 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1212
17-03-17 22:40:22.818 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1212
17-03-17 22:40:22.818 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:40:22.818 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:40:22.818 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) start.
17-03-17 22:40:23.008 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP 1405
17-03-17 22:40:23.008 -07 000000486 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:40:23.008 -07 000000610 INF: FPGA: 'CAMDBLSNAP 457 457 220 220 37103 150' command took 2 ms to send, 1406 ms to get response, and 1412 ms overall
17-03-17 22:40:23.008 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 22:40:23.008 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.205078125, Z-Position -0.16904457689425. ------
17-03-17 22:40:23.018 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:40:23.018 -07 000000502 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.17567 mm
17-03-17 22:40:23.018 -07 000000502 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:40:23.018 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:40:23.018 -07 000000486 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-17 22:40:23.018 -07 000000486 INF: Y Motor: Moving to 69.0426 mm, started at 68.2051 mm, delta = 0.8375 mm
17-03-17 22:40:23.018 -07 000000512 INF: Z Motor: Entering MoveAbsStepped (DAC = 38375, sync = True, waitForSettling = False)
17-03-17 22:40:23.018 -07 000000512 INF: Z Motor: Moving to -0.175669 mm, started at -0.169045 mm, distance = -6.62 um
17-03-17 22:40:23.028 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:40:23.028 -07 000000512 INF: FPGA: Xmit ZDACW 38375\n [Z Motor]
17-03-17 22:40:23.028 -07 000000458 INF: FPGA: Recv ZDACW
17-03-17 22:40:23.038 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:40:23.038 -07 000000512 INF: FPGA: 'ZDACW 38375' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 22:40:23.038 -07 000000593 INF: FPGA: Recv YRDPOS 139684
17-03-17 22:40:23.048 -07 000000462 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:40:23.048 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-17 22:40:23.048 -07 000000486 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:40:23.048 -07 000000486 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:40:23.048 -07 000000486 INF: Y Motor: Moving 1340 steps-16
17-03-17 22:40:23.058 -07 000000512 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:40:23.058 -07 000000593 INF: FPGA: Recv ZDACR 38375
17-03-17 22:40:23.068 -07 000000486 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:40:23.068 -07 000000512 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:40:23.068 -07 000000512 INF: Z Motor: MoveAbsStepped took 43 ms (did NOT wait for settling yet))
17-03-17 22:40:23.218 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 397 ms.
17-03-17 22:40:23.218 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 22:40:23.218 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:40:23.218 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 22:40:23.218 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 22:40:23.248 -07 000000608 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:40:23.248 -07 000000462 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 223 ms overall
17-03-17 22:40:23.328 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) end. Duration was 501 ms.
17-03-17 22:40:23.328 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 502 ms.
17-03-17 22:40:23.328 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:40:23.328 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:40:23.328 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 511 ms.
17-03-17 22:40:23.438 -07 000000458 INF: FPGA: Recv YMVTILE
17-03-17 22:40:23.438 -07 000000486 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-17 22:40:23.488 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:40:23.488 -07 000000458 INF: FPGA: Recv YRDPOS 141367
17-03-17 22:40:23.498 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:23.498 -07 000000486 INF: Y Motor: Encoder = 141367 = motor step 110443.0 = 69.0269 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:40:23.498 -07 000000486 INF: Y Motor: Position error before settling (table move) = -32 encoder counts (-0.016 mm)
17-03-17 22:40:23.498 -07 000000486 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.838 mm, average velocity = 2.110 mm/sec
17-03-17 22:40:24.448 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:40:24.448 -07 000000458 INF: FPGA: Recv YRDPOS 141367
17-03-17 22:40:24.458 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:40:24.458 -07 000000486 INF: Y Motor: Encoder = 141367 = motor step 110443.0 = 69.0269 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:40:24.478 -07 000000486 INF: Y Motor: After move to 69.042610, error = -0.015755, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:40:24.478 -07 000000486 INF: Y Motor: Position error after settling (table move) = -32 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:40:24.478 -07 000000486 INF: Y Motor: Moved to 69.0269 after 1459 ms (table move)
17-03-17 22:40:24.478 -07 000000502 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175669 mm (DAC = 38375)
17-03-17 22:40:24.478 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:24.488 -07 000000512 INF: FPGA: Recv ZSGSRD 36640
17-03-17 22:40:24.488 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-17 22:40:24.488 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:24.488 -07 000000458 INF: FPGA: Recv ZSGSRD 36637
17-03-17 22:40:24.498 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:40:24.498 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:24.498 -07 000000512 INF: FPGA: Recv ZSGSRD 36639
17-03-17 22:40:24.508 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:24.508 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:24.508 -07 000000486 INF: FPGA: Recv ZSGSRD 36637
17-03-17 22:40:24.518 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:24.518 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:24.518 -07 000000462 INF: FPGA: Recv ZSGSRD 36636
17-03-17 22:40:24.528 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:24.528 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:24.528 -07 000000458 INF: FPGA: Recv ZSGSRD 36632
17-03-17 22:40:24.538 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:24.538 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:24.538 -07 000000512 INF: FPGA: Recv ZSGSRD 36634
17-03-17 22:40:24.548 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:24.548 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:24.548 -07 000000576 INF: FPGA: Recv ZSGSRD 36632
17-03-17 22:40:24.558 -07 000000502 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:24.558 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:24.558 -07 000000415 INF: FPGA: Recv ZSGSRD 36634
17-03-17 22:40:24.568 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:24.568 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:24.568 -07 000000576 INF: FPGA: Recv ZSGSRD 36644
17-03-17 22:40:24.578 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:24.578 -07 000000502 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:40:24.578 -07 000000593 INF: FPGA: Recv ZPIEZORD 32947
17-03-17 22:40:24.588 -07 000000502 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:24.588 -07 000000502 INF: Z Motor: Piezo is near 50.4 V (nominally 0 to 100 V), expect near 58.6 V, since DAC is at 5.856 V. Piezo Error = -8.2 V.
17-03-17 22:40:24.588 -07 000000502 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.7 um, Read 10 ADC samples: Avg = 36636 (-174.8 uncal um), Error = 0.9 uncal um, Median = 36636 (-174.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36632 (-174.8 uncal um), Max = 36644 (-174.8 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 22:40:24.588 -07 000000502 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36636, posNoise = 8, negNoise = 4
17-03-17 22:40:24.588 -07 000000502 INF: Z Motor: After move to -0.175669, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:40:24.588 -07 000000502 INF: Z Motor: Settle wait time = 1462 ms, measure time = 101 ms (allowed 150 ms), total time = 1563 ms
17-03-17 22:40:24.588 -07 000000502 INF: Z Motor: Waiting extra 49 ms after reading position to reach expected total of 150 ms
17-03-17 22:40:24.638 -07 000000502 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1617 ms
17-03-17 22:40:24.638 -07 000000502 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:40:24.638 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:40:24.638 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:40:24.638 -07 000000458 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:40:24.638 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:40:24.638 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:40:24.638 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:40:24.638 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:40:24.638 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:40:24.648 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:40:24.648 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:40:24.658 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 22:40:24.658 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 19 ms.
17-03-17 22:40:24.658 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:40:24.708 -07 000000478 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:40:24.908 -07 000000512 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:40:24.908 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:40:24.908 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:40:24.908 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 22:40:24.948 -07 000000459 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:40:24.948 -07 000000502 INF: FPGA: Recv CAMSNAP
17-03-17 22:40:24.948 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 284 ms to get response, and 286 ms overall
17-03-17 22:40:25.038 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 22:40:25.038 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:40:25.038 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:40:25.038 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-17 22:40:25.048 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:40:25.048 -07 000000576 INF: Autofocus start
17-03-17 22:40:25.048 -07 000000576 INF: MeasureProfile start
17-03-17 22:40:25.048 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:40:25.058 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:40:25.058 -07 000000608 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:40:25.058 -07 000000576 INF: MeasureProfile done
17-03-17 22:40:25.058 -07 000000576 INF: X=32  Z correction [um]=0.09220707
17-03-17 22:40:25.058 -07 000000576 INF: Autofocus finished
17-03-17 22:40:25.258 -07 000000478 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:40:25.258 -07 000000608 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:40:25.258 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02685546875, Z-position -0.175680788036689. ----------
17-03-17 22:40:25.258 -07 000000610 INF: Cycle	66	Tile	12	Exposure Settings		A	457	G	220	T	220	C	457
17-03-17 22:40:25.268 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36907, sync = True, waitForSettling = True)
17-03-17 22:40:25.268 -07 000000610 INF: Z Motor: Moving to -0.168949 mm, started at -0.175681 mm, distance = 6.73 um
17-03-17 22:40:25.268 -07 000000610 INF: FPGA: Xmit ZDACW 36907\n [Z Motor]
17-03-17 22:40:25.268 -07 000000593 INF: FPGA: Recv ZDACW
17-03-17 22:40:25.278 -07 000000610 INF: FPGA: 'ZDACW 36907' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:25.278 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:40:25.278 -07 000000608 INF: FPGA: Recv ZDACR 36907
17-03-17 22:40:25.288 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:40:25.288 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:40:25.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:25.438 -07 000000415 INF: FPGA: Recv ZSGSRD 35592
17-03-17 22:40:25.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:40:25.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:25.448 -07 000000486 INF: FPGA: Recv ZSGSRD 35587
17-03-17 22:40:25.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:25.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:25.458 -07 000000415 INF: FPGA: Recv ZSGSRD 35588
17-03-17 22:40:25.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:25.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:25.468 -07 000000608 INF: FPGA: Recv ZSGSRD 35592
17-03-17 22:40:25.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:25.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:25.478 -07 000000576 INF: FPGA: Recv ZSGSRD 35591
17-03-17 22:40:25.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:25.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:25.488 -07 000000415 INF: FPGA: Recv ZSGSRD 35586
17-03-17 22:40:25.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:25.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:25.498 -07 000000576 INF: FPGA: Recv ZSGSRD 35588
17-03-17 22:40:25.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:25.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:25.508 -07 000000512 INF: FPGA: Recv ZSGSRD 35589
17-03-17 22:40:25.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:25.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:25.518 -07 000000415 INF: FPGA: Recv ZSGSRD 35586
17-03-17 22:40:25.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:25.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:25.528 -07 000000512 INF: FPGA: Recv ZSGSRD 35591
17-03-17 22:40:25.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:25.538 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:40:25.538 -07 000000608 INF: FPGA: Recv ZPIEZORD 31506
17-03-17 22:40:25.548 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:25.548 -07 000000610 INF: Z Motor: Piezo is near 47.3 V (nominally 0 to 100 V), expect near 56.3 V, since DAC is at 5.632 V. Piezo Error = -9.0 V.
17-03-17 22:40:25.548 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.9 um, Read 10 ADC samples: Avg = 35589 (-168.1 uncal um), Error = 0.9 uncal um, Median = 35588 (-168.1 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 35586 (-168.1 uncal um), Max = 35592 (-168.1 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 22:40:25.548 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35589, posNoise = 3, negNoise = 3
17-03-17 22:40:25.548 -07 000000610 INF: Z Motor: After move to -0.168949, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:40:25.548 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 22:40:25.548 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:40:25.548 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:40:25.548 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:40:25.548 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:40:25.548 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:40:25.548 -07 000000458 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:40:25.548 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:40:25.548 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:40:25.548 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:40:25.548 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:40:25.548 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:40:25.548 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:40:25.548 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 22:40:25.548 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:40:25.558 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 5 ms.
17-03-17 22:40:25.558 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:40:25.558 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 22:40:25.558 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 22:40:25.568 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 22:40:25.568 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 22:40:25.568 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 457 457 220 220 37084 150\n [Camera]
17-03-17 22:40:25.768 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning red on 193
17-03-17 22:40:26.228 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 649
17-03-17 22:40:26.228 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 649
17-03-17 22:40:26.228 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:40:26.228 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 649
17-03-17 22:40:26.228 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 649
17-03-17 22:40:26.228 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:40:26.228 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:40:26.228 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-17 22:40:26.238 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:40:26.238 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-17 22:40:26.418 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37084 842
17-03-17 22:40:26.568 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP turning grn on 993
17-03-17 22:40:26.608 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 22:40:26.608 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 22:40:26.608 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:40:26.618 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 22:40:26.618 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-17 22:40:26.618 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:40:26.618 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:40:26.618 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 22:40:26.618 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:40:26.628 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 22:40:26.788 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1212
17-03-17 22:40:26.788 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1212
17-03-17 22:40:26.788 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:40:26.788 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1212
17-03-17 22:40:26.788 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1212
17-03-17 22:40:26.788 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:40:26.788 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:40:26.788 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 1475218192, 0x0, 418435064) start.
17-03-17 22:40:26.788 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:40:26.788 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 1439795928, 0x0, 391868352) start.
17-03-17 22:40:26.978 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP 1405
17-03-17 22:40:26.978 -07 000000512 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:40:26.978 -07 000000610 INF: FPGA: 'CAMDBLSNAP 457 457 220 220 37084 150' command took 2 ms to send, 1406 ms to get response, and 1412 ms overall
17-03-17 22:40:26.978 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 22:40:26.978 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.02685546875, Z-Position -0.168954637924266. ------
17-03-17 22:40:26.988 -07 000000415 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:40:26.988 -07 000000512 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.17524 mm
17-03-17 22:40:26.988 -07 000000512 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:40:26.988 -07 000000478 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-17 22:40:26.988 -07 000000576 INF: Z Motor: Entering MoveAbsStepped (DAC = 38281, sync = True, waitForSettling = False)
17-03-17 22:40:26.988 -07 000000576 INF: Z Motor: Moving to -0.175239 mm, started at -0.168955 mm, distance = -6.28 um
17-03-17 22:40:26.988 -07 000000478 INF: Y Motor: Moving to 69.8726 mm, started at 69.0269 mm, delta = 0.8458 mm
17-03-17 22:40:26.998 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:40:27.008 -07 000000576 INF: FPGA: Xmit ZDACW 38281\n [Z Motor]
17-03-17 22:40:27.168 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 1475218192, 0x0, 418435064) end. Duration was 377 ms.
17-03-17 22:40:27.168 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-17 22:40:27.168 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:40:27.178 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 1439795928, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 22:40:27.178 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 22:40:27.178 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:40:27.178 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:40:27.178 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 22:40:27.178 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 22:40:27.188 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 22:40:27.258 -07 000000458 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:40:27.258 -07 000000458 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:40:27.258 -07 000000458 INF: FPGA: Recv YRDPOS 141368
17-03-17 22:40:27.258 -07 000000458 INF: FPGA: Recv ZDACW
17-03-17 22:40:27.258 -07 000000576 INF: FPGA: 'ZDACW 38281' command took 0 ms to send, 243 ms to get response, and 267 ms overall
17-03-17 22:40:27.258 -07 000000576 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:40:27.258 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 253 ms to get response, and 267 ms overall
17-03-17 22:40:27.258 -07 000000478 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:40:27.258 -07 000000415 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 262 ms to get response, and 270 ms overall
17-03-17 22:40:27.258 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 65. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1042, R2=1070, Total=2112. Warn if over 250 bubbles per interval.
17-03-17 22:40:27.258 -07 000000608 INF: FPGA: Recv ZDACR 38281
17-03-17 22:40:27.258 -07 000000478 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:40:27.258 -07 000000478 INF: Y Motor: Moving 1352 steps-32
17-03-17 22:40:27.268 -07 000000576 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:40:27.268 -07 000000576 INF: Z Motor: MoveAbsStepped took 274 ms (did NOT wait for settling yet))
17-03-17 22:40:27.268 -07 000000478 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:40:27.278 -07 000000415 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:40:27.478 -07 000000608 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:40:27.478 -07 000000415 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 217 ms overall
17-03-17 22:40:27.638 -07 000000415 INF: FPGA: Recv YMVTILE
17-03-17 22:40:27.638 -07 000000478 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 381 ms overall
17-03-17 22:40:27.688 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:40:27.688 -07 000000458 INF: FPGA: Recv YRDPOS 143079
17-03-17 22:40:27.698 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:27.698 -07 000000478 INF: Y Motor: Encoder = 143079 = motor step 111780.5 = 69.8628 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:40:27.698 -07 000000478 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-17 22:40:27.698 -07 000000478 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 381 ms, distance = 0.846 mm, average velocity = 2.220 mm/sec
17-03-17 22:40:27.868 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 66, FrontChillerTemperature: 3.979922,
17-03-17 22:40:28.648 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:40:28.648 -07 000000608 INF: FPGA: Recv YRDPOS 143079
17-03-17 22:40:28.658 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:40:28.658 -07 000000478 INF: Y Motor: Encoder = 143079 = motor step 111780.5 = 69.8628 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:40:28.678 -07 000000478 INF: Y Motor: After move to 69.872612, error = -0.009819, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:40:28.678 -07 000000478 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:40:28.678 -07 000000478 INF: Y Motor: Moved to 69.8628 after 1690 ms (table move)
17-03-17 22:40:28.678 -07 000000512 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175239 mm (DAC = 38281)
17-03-17 22:40:28.678 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:28.688 -07 000000458 INF: FPGA: Recv ZSGSRD 36578
17-03-17 22:40:28.688 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-17 22:40:28.688 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:28.688 -07 000000478 INF: FPGA: Recv ZSGSRD 36569
17-03-17 22:40:28.698 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:40:28.698 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:28.698 -07 000000415 INF: FPGA: Recv ZSGSRD 36574
17-03-17 22:40:28.708 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:28.708 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:28.708 -07 000000608 INF: FPGA: Recv ZSGSRD 36568
17-03-17 22:40:28.718 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:28.718 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:28.718 -07 000000415 INF: FPGA: Recv ZSGSRD 36566
17-03-17 22:40:28.728 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:28.728 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:28.728 -07 000000608 INF: FPGA: Recv ZSGSRD 36562
17-03-17 22:40:28.738 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:28.738 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:28.738 -07 000000415 INF: FPGA: Recv ZSGSRD 36568
17-03-17 22:40:28.748 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:28.748 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:28.748 -07 000000623 INF: FPGA: Recv ZSGSRD 36569
17-03-17 22:40:28.758 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:28.758 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:28.758 -07 000000415 INF: FPGA: Recv ZSGSRD 36569
17-03-17 22:40:28.768 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:28.768 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:28.768 -07 000000438 INF: FPGA: Recv ZSGSRD 36567
17-03-17 22:40:28.778 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:28.778 -07 000000512 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:40:28.778 -07 000000415 INF: FPGA: Recv ZPIEZORD 32857
17-03-17 22:40:28.788 -07 000000512 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:28.788 -07 000000512 INF: Z Motor: Piezo is near 50.2 V (nominally 0 to 100 V), expect near 58.4 V, since DAC is at 5.841 V. Piezo Error = -8.2 V.
17-03-17 22:40:28.788 -07 000000512 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.2 um, Read 10 ADC samples: Avg = 36569 (-174.4 uncal um), Error = 0.9 uncal um, Median = 36568 (-174.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 36562 (-174.3 uncal um), Max = 36578 (-174.4 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 22:40:28.788 -07 000000512 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36569, posNoise = 9, negNoise = 7
17-03-17 22:40:28.788 -07 000000512 INF: Z Motor: After move to -0.175239, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:40:28.788 -07 000000512 INF: Z Motor: Settle wait time = 1694 ms, measure time = 101 ms (allowed 150 ms), total time = 1795 ms
17-03-17 22:40:28.788 -07 000000512 INF: Z Motor: Waiting extra 49 ms after reading position to reach expected total of 150 ms
17-03-17 22:40:28.838 -07 000000512 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1847 ms
17-03-17 22:40:28.838 -07 000000512 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:40:28.838 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:40:28.838 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:40:28.838 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:40:28.838 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:40:28.838 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:40:28.838 -07 000000415 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:40:28.838 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:40:28.838 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:40:28.848 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:40:28.848 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:40:28.858 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 22:40:28.858 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-17 22:40:28.858 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:40:28.898 -07 000000608 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:40:29.098 -07 000000478 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:40:29.098 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:40:29.108 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:40:29.108 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 677954600, 0x0, 559484976) start.
17-03-17 22:40:29.138 -07 000000415 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:40:29.138 -07 000000438 INF: FPGA: Recv CAMSNAP
17-03-17 22:40:29.138 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 284 ms overall
17-03-17 22:40:29.218 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 677954600, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 22:40:29.218 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:40:29.218 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:40:29.218 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 22:40:29.238 -07 000000438 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:40:29.238 -07 000000415 INF: Autofocus start
17-03-17 22:40:29.238 -07 000000415 INF: MeasureProfile start
17-03-17 22:40:29.238 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:40:29.248 -07 000000438 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:40:29.248 -07 000000438 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:40:29.248 -07 000000415 INF: MeasureProfile done
17-03-17 22:40:29.248 -07 000000415 INF: X=32  Z correction [um]=0.09220707
17-03-17 22:40:29.248 -07 000000415 INF: Autofocus finished
17-03-17 22:40:29.448 -07 000000576 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:40:29.448 -07 000000438 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:40:29.448 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86279296875, Z-position -0.175250365823191. ----------
17-03-17 22:40:29.458 -07 000000610 INF: Cycle	66	Tile	13	Exposure Settings		A	457	G	220	T	220	C	457
17-03-17 22:40:29.458 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36814, sync = True, waitForSettling = True)
17-03-17 22:40:29.458 -07 000000610 INF: Z Motor: Moving to -0.168524 mm, started at -0.175250 mm, distance = 6.73 um
17-03-17 22:40:29.458 -07 000000610 INF: FPGA: Xmit ZDACW 36814\n [Z Motor]
17-03-17 22:40:29.458 -07 000000512 INF: FPGA: Recv ZDACW
17-03-17 22:40:29.468 -07 000000610 INF: FPGA: 'ZDACW 36814' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:40:29.468 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:40:29.468 -07 000000478 INF: FPGA: Recv ZDACR 36814
17-03-17 22:40:29.478 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:29.478 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:40:29.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:29.628 -07 000000608 INF: FPGA: Recv ZSGSRD 35525
17-03-17 22:40:29.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:40:29.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:29.638 -07 000000576 INF: FPGA: Recv ZSGSRD 35523
17-03-17 22:40:29.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:29.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:29.648 -07 000000438 INF: FPGA: Recv ZSGSRD 35522
17-03-17 22:40:29.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:29.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:29.658 -07 000000458 INF: FPGA: Recv ZSGSRD 35520
17-03-17 22:40:29.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:29.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:29.668 -07 000000608 INF: FPGA: Recv ZSGSRD 35525
17-03-17 22:40:29.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:29.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:29.678 -07 000000576 INF: FPGA: Recv ZSGSRD 35524
17-03-17 22:40:29.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:29.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:29.688 -07 000000608 INF: FPGA: Recv ZSGSRD 35527
17-03-17 22:40:29.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:29.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:29.698 -07 000000458 INF: FPGA: Recv ZSGSRD 35530
17-03-17 22:40:29.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:29.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:29.708 -07 000000608 INF: FPGA: Recv ZSGSRD 35523
17-03-17 22:40:29.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:29.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:29.718 -07 000000478 INF: FPGA: Recv ZSGSRD 35521
17-03-17 22:40:29.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:29.728 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:40:29.728 -07 000000415 INF: FPGA: Recv ZPIEZORD 31450
17-03-17 22:40:29.738 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:29.738 -07 000000610 INF: Z Motor: Piezo is near 47.2 V (nominally 0 to 100 V), expect near 56.2 V, since DAC is at 5.617 V. Piezo Error = -9.0 V.
17-03-17 22:40:29.738 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.5 um, Read 10 ADC samples: Avg = 35524 (-167.7 uncal um), Error = 0.9 uncal um, Median = 35524 (-167.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35520 (-167.6 uncal um), Max = 35530 (-167.7 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 22:40:29.738 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35524, posNoise = 6, negNoise = 4
17-03-17 22:40:29.738 -07 000000610 INF: Z Motor: After move to -0.168524, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:40:29.738 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 22:40:29.738 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:40:29.738 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:40:29.738 -07 000000415 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:40:29.738 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:40:29.738 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:40:29.738 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:40:29.738 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:40:29.738 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:40:29.738 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:40:29.738 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:40:29.738 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 22:40:29.738 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:40:29.748 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 22:40:29.748 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:40:29.748 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:40:29.748 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:40:29.748 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 22:40:29.748 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 12 ms.
17-03-17 22:40:29.758 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 22:40:29.758 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 22:40:29.758 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 457 457 220 220 36990 150\n [Camera]
17-03-17 22:40:29.958 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:40:30.408 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 649
17-03-17 22:40:30.408 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 649
17-03-17 22:40:30.418 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:40:30.418 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:40:30.418 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 22:40:30.418 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 649
17-03-17 22:40:30.418 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 649
17-03-17 22:40:30.418 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:40:30.418 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:40:30.418 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 22:40:30.608 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36990 842
17-03-17 22:40:30.758 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP turning grn on 992
17-03-17 22:40:30.798 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 383 ms.
17-03-17 22:40:30.798 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 22:40:30.798 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:40:30.798 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 22:40:30.798 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 22:40:30.798 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:40:30.798 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:40:30.798 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 22:40:30.798 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:40:30.808 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 22:40:30.978 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1212
17-03-17 22:40:30.978 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1212
17-03-17 22:40:30.978 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:40:30.978 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:40:30.978 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-17 22:40:30.978 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1212
17-03-17 22:40:30.978 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1212
17-03-17 22:40:30.978 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:40:30.978 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:40:30.978 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 22:40:31.168 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP 1406
17-03-17 22:40:31.168 -07 000000438 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:40:31.168 -07 000000610 INF: FPGA: 'CAMDBLSNAP 457 457 220 220 36990 150' command took 2 ms to send, 1406 ms to get response, and 1413 ms overall
17-03-17 22:40:31.168 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 22:40:31.168 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.86279296875, Z-Position -0.168537064135051. ------
17-03-17 22:40:31.178 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:40:31.178 -07 000000438 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.17492 mm
17-03-17 22:40:31.178 -07 000000438 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:40:31.288 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:40:31.288 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 117 ms overall
17-03-17 22:40:31.288 -07 000000512 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:40:31.298 -07 000000576 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-17 22:40:31.298 -07 000000576 INF: Y Motor: Moving to 70.7026 mm, started at 69.8628 mm, delta = 0.8398 mm
17-03-17 22:40:31.298 -07 000000478 INF: Z Motor: Entering MoveAbsStepped (DAC = 38211, sync = True, waitForSettling = False)
17-03-17 22:40:31.298 -07 000000478 INF: Z Motor: Moving to -0.174919 mm, started at -0.168537 mm, distance = -6.38 um
17-03-17 22:40:31.298 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:40:31.308 -07 000000478 INF: FPGA: Xmit ZDACW 38211\n [Z Motor]
17-03-17 22:40:31.378 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 397 ms.
17-03-17 22:40:31.378 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 22:40:31.378 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:40:31.378 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 397 ms.
17-03-17 22:40:31.378 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 22:40:31.378 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:40:31.378 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:40:31.378 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 22:40:31.378 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 22:40:31.388 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-17 22:40:31.388 -07 000000415 INF: FPGA: Recv YRDPOS 143080
17-03-17 22:40:31.388 -07 000000415 INF: FPGA: Recv ZDACW
17-03-17 22:40:31.388 -07 000000478 INF: FPGA: 'ZDACW 38211' command took 0 ms to send, 78 ms to get response, and 96 ms overall
17-03-17 22:40:31.388 -07 000000478 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:40:31.388 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 88 ms to get response, and 96 ms overall
17-03-17 22:40:31.388 -07 000000576 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:40:31.398 -07 000000415 INF: FPGA: Recv ZDACR 38211
17-03-17 22:40:31.398 -07 000000478 INF: FPGA: 'ZDACR' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 22:40:31.398 -07 000000478 INF: Z Motor: MoveAbsStepped took 99 ms (did NOT wait for settling yet))
17-03-17 22:40:31.398 -07 000000576 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:40:31.398 -07 000000576 INF: Y Motor: Moving 1343 steps-20
17-03-17 22:40:31.398 -07 000000576 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:40:31.498 -07 000000478 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:40:31.498 -07 000000512 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 202 ms to get response, and 202 ms overall
17-03-17 22:40:31.778 -07 000000478 INF: FPGA: Recv YMVTILE
17-03-17 22:40:31.778 -07 000000576 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 378 ms overall
17-03-17 22:40:31.818 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:40:31.818 -07 000000478 INF: FPGA: Recv YRDPOS 144769
17-03-17 22:40:31.828 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:40:31.828 -07 000000576 INF: Y Motor: Encoder = 144769 = motor step 113100.8 = 70.6880 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:40:31.828 -07 000000576 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-17 22:40:31.828 -07 000000576 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.840 mm, average velocity = 2.222 mm/sec
17-03-17 22:40:31.998 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:40:31.998 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 65. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1042, R2=1070, Total=2112. Warn if over 250 bubbles per interval.
17-03-17 22:40:32.778 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:40:32.778 -07 000000478 INF: FPGA: Recv YRDPOS 144769
17-03-17 22:40:32.788 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:32.788 -07 000000576 INF: Y Motor: Encoder = 144769 = motor step 113100.8 = 70.6880 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:40:32.808 -07 000000576 INF: Y Motor: After move to 70.702606, error = -0.014618, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:40:32.808 -07 000000576 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:40:32.808 -07 000000576 INF: Y Motor: Moved to 70.6880 after 1513 ms (table move)
17-03-17 22:40:32.808 -07 000000438 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174919 mm (DAC = 38211)
17-03-17 22:40:32.818 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:32.818 -07 000000415 INF: FPGA: Recv ZSGSRD 36519
17-03-17 22:40:32.828 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:40:32.828 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:32.828 -07 000000415 INF: FPGA: Recv ZSGSRD 36521
17-03-17 22:40:32.838 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:32.838 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:32.838 -07 000000608 INF: FPGA: Recv ZSGSRD 36516
17-03-17 22:40:32.848 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:32.848 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:32.848 -07 000000512 INF: FPGA: Recv ZSGSRD 36525
17-03-17 22:40:32.858 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:32.858 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:32.858 -07 000000576 INF: FPGA: Recv ZSGSRD 36526
17-03-17 22:40:32.868 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:32.868 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:32.868 -07 000000512 INF: FPGA: Recv ZSGSRD 36516
17-03-17 22:40:32.878 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:32.878 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:32.878 -07 000000512 INF: FPGA: Recv ZSGSRD 36517
17-03-17 22:40:32.888 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:32.888 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:32.888 -07 000000512 INF: FPGA: Recv ZSGSRD 36508
17-03-17 22:40:32.898 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:32.898 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:32.898 -07 000000512 INF: FPGA: Recv ZSGSRD 36526
17-03-17 22:40:32.908 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:32.918 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:32.918 -07 000000608 INF: FPGA: Recv ZSGSRD 36511
17-03-17 22:40:32.928 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:40:32.928 -07 000000438 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:40:32.928 -07 000000415 INF: FPGA: Recv ZPIEZORD 32849
17-03-17 22:40:32.938 -07 000000438 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:32.938 -07 000000438 INF: Z Motor: Piezo is near 50.2 V (nominally 0 to 100 V), expect near 58.3 V, since DAC is at 5.831 V. Piezo Error = -8.1 V.
17-03-17 22:40:32.938 -07 000000438 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.9 um, Read 10 ADC samples: Avg = 36518 (-174.0 uncal um), Error = 0.9 uncal um, Median = 36518 (-174.0 uncal um), StdDev = 6 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 36508 (-174.0 uncal um), Max = 36526 (-174.1 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-17 22:40:32.938 -07 000000438 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36518, posNoise = 8, negNoise = 10
17-03-17 22:40:32.938 -07 000000438 INF: Z Motor: After move to -0.174919, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:40:32.938 -07 000000438 INF: Z Motor: Settle wait time = 1517 ms, measure time = 122 ms (allowed 150 ms), total time = 1639 ms
17-03-17 22:40:32.938 -07 000000438 INF: Z Motor: Waiting extra 28 ms after reading position to reach expected total of 150 ms
17-03-17 22:40:32.968 -07 000000438 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1787 ms
17-03-17 22:40:32.968 -07 000000438 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:40:32.968 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:40:32.968 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:40:32.968 -07 000000478 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:40:32.968 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:40:32.968 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:40:32.968 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:40:32.968 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 22:40:32.968 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:40:32.978 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:40:32.978 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:40:32.978 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 22:40:32.978 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 22:40:32.978 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:40:33.028 -07 000000576 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:40:33.228 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 66, FrontChillerTemperature: 3.999021,
17-03-17 22:40:33.228 -07 000000438 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:40:33.228 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:40:33.228 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:40:33.228 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 22:40:33.268 -07 000000608 INF: FPGA: Recv @CAMSNAP 282
17-03-17 22:40:33.268 -07 000000608 INF: FPGA: Recv CAMSNAP
17-03-17 22:40:33.268 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 287 ms overall
17-03-17 22:40:33.348 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 117 ms.
17-03-17 22:40:33.348 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:40:33.348 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 22:40:33.348 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 120 ms.
17-03-17 22:40:33.368 -07 000000576 INF: Autofocus start
17-03-17 22:40:33.368 -07 000000576 INF: MeasureProfile start
17-03-17 22:40:33.368 -07 000000438 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:40:33.368 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:40:33.378 -07 000000438 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:40:33.378 -07 000000438 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:40:33.378 -07 000000576 INF: MeasureProfile done
17-03-17 22:40:33.378 -07 000000576 INF: X=0  Z correction [um]=-0.0713522
17-03-17 22:40:33.378 -07 000000576 INF: Autofocus finished
17-03-17 22:40:33.578 -07 000000415 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:40:33.578 -07 000000438 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:40:33.578 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.68798828125, Z-position -0.174922731003962. ----------
17-03-17 22:40:33.578 -07 000000610 INF: Cycle	66	Tile	14	Exposure Settings		A	457	G	220	T	220	C	457
17-03-17 22:40:33.588 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36708, sync = True, waitForSettling = True)
17-03-17 22:40:33.588 -07 000000610 INF: Z Motor: Moving to -0.168038 mm, started at -0.174923 mm, distance = 6.88 um
17-03-17 22:40:33.588 -07 000000610 INF: FPGA: Xmit ZDACW 36708\n [Z Motor]
17-03-17 22:40:33.588 -07 000000512 INF: FPGA: Recv ZDACW
17-03-17 22:40:33.598 -07 000000610 INF: FPGA: 'ZDACW 36708' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:40:33.598 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:40:33.598 -07 000000593 INF: FPGA: Recv ZDACR 36708
17-03-17 22:40:33.608 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:33.608 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:40:33.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:33.758 -07 000000415 INF: FPGA: Recv ZSGSRD 35447
17-03-17 22:40:33.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:33.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:33.768 -07 000000478 INF: FPGA: Recv ZSGSRD 35452
17-03-17 22:40:33.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:33.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:33.778 -07 000000415 INF: FPGA: Recv ZSGSRD 35454
17-03-17 22:40:33.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:33.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:33.788 -07 000000478 INF: FPGA: Recv ZSGSRD 35443
17-03-17 22:40:33.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:33.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:33.798 -07 000000608 INF: FPGA: Recv ZSGSRD 35452
17-03-17 22:40:33.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:33.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:33.808 -07 000000576 INF: FPGA: Recv ZSGSRD 35451
17-03-17 22:40:33.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:33.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:33.818 -07 000000502 INF: FPGA: Recv ZSGSRD 35444
17-03-17 22:40:33.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:33.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:33.828 -07 000000478 INF: FPGA: Recv ZSGSRD 35448
17-03-17 22:40:33.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:33.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:33.838 -07 000000438 INF: FPGA: Recv ZSGSRD 35448
17-03-17 22:40:33.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:33.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:33.848 -07 000000576 INF: FPGA: Recv ZSGSRD 35444
17-03-17 22:40:33.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:33.858 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:40:33.858 -07 000000608 INF: FPGA: Recv ZPIEZORD 31374
17-03-17 22:40:33.868 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:33.868 -07 000000610 INF: Z Motor: Piezo is near 47.0 V (nominally 0 to 100 V), expect near 56.0 V, since DAC is at 5.601 V. Piezo Error = -9.0 V.
17-03-17 22:40:33.868 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.0 um, Read 10 ADC samples: Avg = 35448 (-167.2 uncal um), Error = 0.9 uncal um, Median = 35448 (-167.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35443 (-167.1 uncal um), Max = 35454 (-167.2 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 22:40:33.868 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35448, posNoise = 6, negNoise = 5
17-03-17 22:40:33.868 -07 000000610 INF: Z Motor: After move to -0.168038, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:40:33.868 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 22:40:33.868 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:40:33.868 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:40:33.868 -07 000000478 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:40:33.868 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:40:33.868 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:40:33.868 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:40:33.868 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 22:40:33.868 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:40:33.868 -07 000000593 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:40:33.868 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:40:33.868 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 22:40:33.868 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:40:33.878 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:40:33.878 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:40:33.878 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 22:40:33.878 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:40:33.888 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 22:40:33.888 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 22:40:33.888 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 22:40:33.888 -07 000000593 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 22:40:33.888 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 457 457 220 220 36885 150\n [Camera]
17-03-17 22:40:34.088 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning red on 193
17-03-17 22:40:34.548 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 649
17-03-17 22:40:34.548 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 649
17-03-17 22:40:34.548 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:40:34.548 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 649
17-03-17 22:40:34.548 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 649
17-03-17 22:40:34.548 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:40:34.548 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:40:34.548 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-17 22:40:34.548 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:40:34.548 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-17 22:40:34.738 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36885 842
17-03-17 22:40:34.888 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP turning grn on 993
17-03-17 22:40:34.938 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 388 ms.
17-03-17 22:40:34.938 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 22:40:34.938 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:40:34.948 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 393 ms.
17-03-17 22:40:34.948 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 22:40:34.948 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:40:34.948 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:40:34.948 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:40:34.948 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 22:40:34.948 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-17 22:40:35.108 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1212
17-03-17 22:40:35.108 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1212
17-03-17 22:40:35.108 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:40:35.108 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1212
17-03-17 22:40:35.108 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1212
17-03-17 22:40:35.108 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:40:35.118 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:40:35.118 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start.
17-03-17 22:40:35.118 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:40:35.118 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) start.
17-03-17 22:40:35.298 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP 1405
17-03-17 22:40:35.298 -07 000000502 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:40:35.298 -07 000000610 INF: FPGA: 'CAMDBLSNAP 457 457 220 220 36885 150' command took 2 ms to send, 1405 ms to get response, and 1412 ms overall
17-03-17 22:40:35.298 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 22:40:35.298 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.68798828125, Z-Position -0.168048824012277. ------
17-03-17 22:40:35.418 -07 000000478 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:40:35.418 -07 000000593 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.17441 mm
17-03-17 22:40:35.418 -07 000000593 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:40:35.428 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:40:35.428 -07 000000478 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 22:40:35.428 -07 000000415 INF: Z Motor: Entering MoveAbsStepped (DAC = 38100, sync = True, waitForSettling = False)
17-03-17 22:40:35.428 -07 000000415 INF: Z Motor: Moving to -0.174411 mm, started at -0.168049 mm, distance = -6.36 um
17-03-17 22:40:35.428 -07 000000478 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:40:35.428 -07 000000576 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-17 22:40:35.428 -07 000000576 INF: Y Motor: Moving to 71.5326 mm, started at 70.6880 mm, delta = 0.8446 mm
17-03-17 22:40:35.438 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:40:35.438 -07 000000486 INF: FPGA: Recv YRDPOS 144770
17-03-17 22:40:35.448 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-17 22:40:35.448 -07 000000415 INF: FPGA: Xmit ZDACW 38100\n [Z Motor]
17-03-17 22:40:35.448 -07 000000576 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:40:35.448 -07 000000608 INF: FPGA: Recv ZDACW
17-03-17 22:40:35.448 -07 000000576 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:40:35.448 -07 000000576 INF: Y Motor: Moving 1351 steps-30
17-03-17 22:40:35.458 -07 000000415 INF: FPGA: 'ZDACW 38100' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-17 22:40:35.458 -07 000000415 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:40:35.458 -07 000000486 INF: FPGA: Recv ZDACR 38100
17-03-17 22:40:35.468 -07 000000415 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:35.468 -07 000000415 INF: Z Motor: MoveAbsStepped took 38 ms (did NOT wait for settling yet))
17-03-17 22:40:35.468 -07 000000576 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:40:35.518 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) end. Duration was 396 ms.
17-03-17 22:40:35.518 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 22:40:35.518 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:40:35.518 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 398 ms.
17-03-17 22:40:35.518 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 22:40:35.518 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:40:35.518 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:40:35.518 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:40:35.518 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 415 ms.
17-03-17 22:40:35.528 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 418 ms.
17-03-17 22:40:35.628 -07 000000415 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:40:35.628 -07 000000478 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-17 22:40:35.848 -07 000000478 INF: FPGA: Recv YMVTILE
17-03-17 22:40:35.848 -07 000000576 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 396 ms overall
17-03-17 22:40:35.888 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:40:35.888 -07 000000459 INF: FPGA: Recv YRDPOS 146470
17-03-17 22:40:35.898 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:35.898 -07 000000576 INF: Y Motor: Encoder = 146470 = motor step 114429.7 = 71.5186 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:40:35.898 -07 000000576 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-17 22:40:35.898 -07 000000576 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 396 ms, distance = 0.845 mm, average velocity = 2.133 mm/sec
17-03-17 22:40:36.848 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:40:36.848 -07 000000459 INF: FPGA: Recv YRDPOS 146470
17-03-17 22:40:36.858 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:40:36.858 -07 000000576 INF: Y Motor: Encoder = 146470 = motor step 114429.7 = 71.5186 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:40:36.878 -07 000000576 INF: Y Motor: After move to 71.532608, error = -0.014053, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:40:36.878 -07 000000576 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:40:36.878 -07 000000576 INF: Y Motor: Moved to 71.5186 after 1455 ms (table move)
17-03-17 22:40:36.888 -07 000000593 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174411 mm (DAC = 38100)
17-03-17 22:40:36.888 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:36.888 -07 000000486 INF: FPGA: Recv ZSGSRD 36445
17-03-17 22:40:36.898 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:40:36.898 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:36.898 -07 000000512 INF: FPGA: Recv ZSGSRD 36442
17-03-17 22:40:36.908 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:36.908 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:36.908 -07 000000462 INF: FPGA: Recv ZSGSRD 36439
17-03-17 22:40:36.918 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:36.918 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:36.918 -07 000000576 INF: FPGA: Recv ZSGSRD 36435
17-03-17 22:40:36.928 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:36.928 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:36.928 -07 000000486 INF: FPGA: Recv ZSGSRD 36438
17-03-17 22:40:36.938 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:36.938 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:36.938 -07 000000512 INF: FPGA: Recv ZSGSRD 36441
17-03-17 22:40:36.948 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:36.948 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:36.948 -07 000000459 INF: FPGA: Recv ZSGSRD 36443
17-03-17 22:40:36.958 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:36.958 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:36.958 -07 000000486 INF: FPGA: Recv ZSGSRD 36438
17-03-17 22:40:36.968 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:36.968 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:36.968 -07 000000462 INF: FPGA: Recv ZSGSRD 36440
17-03-17 22:40:36.978 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:36.978 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:36.978 -07 000000459 INF: FPGA: Recv ZSGSRD 36438
17-03-17 22:40:36.988 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:36.988 -07 000000593 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:40:36.988 -07 000000512 INF: FPGA: Recv ZPIEZORD 32724
17-03-17 22:40:36.998 -07 000000593 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:36.998 -07 000000593 INF: Z Motor: Piezo is near 49.9 V (nominally 0 to 100 V), expect near 58.1 V, since DAC is at 5.814 V. Piezo Error = -8.2 V.
17-03-17 22:40:36.998 -07 000000593 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.4 um, Read 10 ADC samples: Avg = 36440 (-173.5 uncal um), Error = 0.9 uncal um, Median = 36440 (-173.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 36435 (-173.5 uncal um), Max = 36445 (-173.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 22:40:36.998 -07 000000593 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36440, posNoise = 5, negNoise = 5
17-03-17 22:40:36.998 -07 000000593 INF: Z Motor: After move to -0.174411, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:40:36.998 -07 000000593 INF: Z Motor: Settle wait time = 1459 ms, measure time = 109 ms (allowed 150 ms), total time = 1568 ms
17-03-17 22:40:36.998 -07 000000593 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-17 22:40:36.998 -07 000000486 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:40:36.998 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 65. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1042, R2=1070, Total=2112. Warn if over 250 bubbles per interval.
17-03-17 22:40:37.048 -07 000000593 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1621 ms
17-03-17 22:40:37.048 -07 000000593 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:40:37.048 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:40:37.048 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:40:37.048 -07 000000486 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:40:37.048 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:40:37.048 -07 000000459 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:40:37.048 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:40:37.048 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 22:40:37.048 -07 000000459 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:40:37.058 -07 000000459 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:40:37.058 -07 000000459 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:40:37.058 -07 000000459 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 22:40:37.058 -07 000000459 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 22:40:37.068 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:40:37.108 -07 000000462 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:40:37.308 -07 000000512 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:40:37.308 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:40:37.318 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:40:37.318 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 22:40:37.348 -07 000000576 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:40:37.348 -07 000000512 INF: FPGA: Recv CAMSNAP
17-03-17 22:40:37.348 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 287 ms overall
17-03-17 22:40:37.428 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 22:40:37.428 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:40:37.428 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:40:37.428 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 116 ms.
17-03-17 22:40:37.448 -07 000000459 INF: Autofocus start
17-03-17 22:40:37.448 -07 000000459 INF: MeasureProfile start
17-03-17 22:40:37.448 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:40:37.448 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:40:37.458 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:40:37.458 -07 000000576 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:40:37.458 -07 000000459 INF: MeasureProfile done
17-03-17 22:40:37.458 -07 000000459 INF: X=-16  Z correction [um]=-0.1496812
17-03-17 22:40:37.458 -07 000000459 INF: Autofocus finished
17-03-17 22:40:37.658 -07 000000459 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:40:37.658 -07 000000576 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:40:37.658 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.5185546875, Z-position -0.174421642456904. ----------
17-03-17 22:40:37.658 -07 000000610 INF: Cycle	66	Tile	15	Exposure Settings		A	457	G	220	T	220	C	457
17-03-17 22:40:37.668 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36580, sync = True, waitForSettling = True)
17-03-17 22:40:37.668 -07 000000610 INF: Z Motor: Moving to -0.167453 mm, started at -0.174422 mm, distance = 6.97 um
17-03-17 22:40:37.668 -07 000000610 INF: FPGA: Xmit ZDACW 36580\n [Z Motor]
17-03-17 22:40:37.668 -07 000000459 INF: FPGA: Recv ZDACW
17-03-17 22:40:37.678 -07 000000610 INF: FPGA: 'ZDACW 36580' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:40:37.678 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:40:37.678 -07 000000486 INF: FPGA: Recv ZDACR 36580
17-03-17 22:40:37.688 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:37.688 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:40:37.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:37.838 -07 000000459 INF: FPGA: Recv ZSGSRD 35357
17-03-17 22:40:37.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:40:37.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:37.848 -07 000000576 INF: FPGA: Recv ZSGSRD 35358
17-03-17 22:40:37.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:37.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:37.858 -07 000000512 INF: FPGA: Recv ZSGSRD 35359
17-03-17 22:40:37.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:37.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:37.868 -07 000000576 INF: FPGA: Recv ZSGSRD 35354
17-03-17 22:40:37.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:37.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:37.878 -07 000000512 INF: FPGA: Recv ZSGSRD 35358
17-03-17 22:40:37.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:37.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:37.888 -07 000000462 INF: FPGA: Recv ZSGSRD 35356
17-03-17 22:40:37.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:37.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:37.898 -07 000000512 INF: FPGA: Recv ZSGSRD 35362
17-03-17 22:40:37.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:37.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:37.908 -07 000000459 INF: FPGA: Recv ZSGSRD 35352
17-03-17 22:40:37.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:37.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:37.918 -07 000000512 INF: FPGA: Recv ZSGSRD 35356
17-03-17 22:40:37.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:37.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:37.928 -07 000000459 INF: FPGA: Recv ZSGSRD 35358
17-03-17 22:40:37.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:37.938 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:40:37.938 -07 000000462 INF: FPGA: Recv ZPIEZORD 31254
17-03-17 22:40:37.948 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:37.948 -07 000000610 INF: Z Motor: Piezo is near 46.8 V (nominally 0 to 100 V), expect near 55.8 V, since DAC is at 5.582 V. Piezo Error = -9.1 V.
17-03-17 22:40:37.948 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.5 um, Read 10 ADC samples: Avg = 35357 (-166.6 uncal um), Error = 0.9 uncal um, Median = 35358 (-166.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35352 (-166.6 uncal um), Max = 35362 (-166.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 22:40:37.948 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35357, posNoise = 5, negNoise = 5
17-03-17 22:40:37.948 -07 000000610 INF: Z Motor: After move to -0.167453, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:40:37.948 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 22:40:37.948 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:40:37.948 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:40:37.948 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:40:37.948 -07 000000486 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:40:37.948 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:40:37.948 -07 000000593 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:40:37.948 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 22:40:37.948 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:40:37.948 -07 000000459 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:40:37.948 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:40:37.948 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 22:40:37.948 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:40:37.958 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:40:37.958 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:40:37.958 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:40:37.958 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:40:37.968 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 22:40:37.968 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 22:40:37.968 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 22:40:37.968 -07 000000459 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 22:40:37.978 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 457 457 220 220 36757 150\n [Camera]
17-03-17 22:40:38.178 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:40:38.588 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 66, FrontChillerTemperature: 3.978563,
17-03-17 22:40:38.628 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 649
17-03-17 22:40:38.638 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 649
17-03-17 22:40:38.638 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:40:38.638 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 649
17-03-17 22:40:38.638 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 649
17-03-17 22:40:38.638 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:40:38.638 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:40:38.638 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-17 22:40:38.638 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:40:38.638 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-17 22:40:38.828 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36757 842
17-03-17 22:40:38.978 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP turning grn on 992
17-03-17 22:40:39.028 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 389 ms.
17-03-17 22:40:39.028 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 22:40:39.028 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:40:39.028 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:40:39.028 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 22:40:39.028 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 389 ms.
17-03-17 22:40:39.028 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 22:40:39.028 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:40:39.038 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:40:39.038 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-17 22:40:39.198 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1212
17-03-17 22:40:39.198 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1212
17-03-17 22:40:39.198 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:40:39.198 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:40:39.198 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 656674232, 0x0, 391868352) start.
17-03-17 22:40:39.198 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1212
17-03-17 22:40:39.198 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1212
17-03-17 22:40:39.198 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:40:39.198 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:40:39.198 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 1456670992, 0x0, 418435064) start.
17-03-17 22:40:39.388 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP 1405
17-03-17 22:40:39.388 -07 000000486 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:40:39.388 -07 000000610 INF: FPGA: 'CAMDBLSNAP 457 457 220 220 36757 150' command took 2 ms to send, 1405 ms to get response, and 1412 ms overall
17-03-17 22:40:39.388 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 22:40:39.388 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.5185546875, Z-Position -0.167464220707377. ------
17-03-17 22:40:39.398 -07 000000593 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:40:39.398 -07 000000486 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.17381 mm
17-03-17 22:40:39.398 -07 000000486 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:40:39.398 -07 000000462 INF: Z Motor: Entering MoveAbsStepped (DAC = 37968, sync = True, waitForSettling = False)
17-03-17 22:40:39.398 -07 000000462 INF: Z Motor: Moving to -0.173806 mm, started at -0.167464 mm, distance = -6.34 um
17-03-17 22:40:39.398 -07 000000512 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-17 22:40:39.398 -07 000000512 INF: Y Motor: Moving to 72.3626 mm, started at 71.5186 mm, delta = 0.8441 mm
17-03-17 22:40:39.398 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:40:39.408 -07 000000593 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:40:39.408 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:40:39.408 -07 000000501 INF: FPGA: Recv YRDPOS 146470
17-03-17 22:40:39.418 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 22:40:39.418 -07 000000512 INF: Y Motor: Encoder = 146470 = motor step 114429.7 = 71.5186 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:40:39.418 -07 000000512 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:40:39.418 -07 000000512 INF: Y Motor: Moving 1350 steps-29
17-03-17 22:40:39.418 -07 000000462 INF: FPGA: Xmit ZDACW 37968\n [Z Motor]
17-03-17 22:40:39.418 -07 000000576 INF: FPGA: Recv ZDACW
17-03-17 22:40:39.428 -07 000000593 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:40:39.428 -07 000000462 INF: FPGA: 'ZDACW 37968' command took 1 ms to send, 0 ms to get response, and 23 ms overall
17-03-17 22:40:39.438 -07 000000512 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:40:39.448 -07 000000462 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:40:39.448 -07 000000501 INF: FPGA: Recv ZDACR 37968
17-03-17 22:40:39.458 -07 000000462 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:40:39.458 -07 000000462 INF: Z Motor: MoveAbsStepped took 53 ms (did NOT wait for settling yet))
17-03-17 22:40:39.598 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 656674232, 0x0, 391868352) end. Duration was 400 ms.
17-03-17 22:40:39.598 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 22:40:39.598 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:40:39.598 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 1456670992, 0x0, 418435064) end. Duration was 401 ms.
17-03-17 22:40:39.598 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 22:40:39.598 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:40:39.608 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:40:39.608 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 9 ms.
17-03-17 22:40:39.608 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-17 22:40:39.608 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-17 22:40:39.628 -07 000000459 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:40:39.628 -07 000000593 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 22:40:39.808 -07 000000541 INF: FPGA: Recv YMVTILE
17-03-17 22:40:39.808 -07 000000512 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 22:40:39.848 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:40:39.858 -07 000000462 INF: FPGA: Recv YRDPOS 148171
17-03-17 22:40:39.858 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 22:40:39.858 -07 000000512 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:40:39.858 -07 000000512 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 22:40:39.858 -07 000000512 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.844 mm, average velocity = 2.126 mm/sec
17-03-17 22:40:40.808 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:40:40.808 -07 000000541 INF: FPGA: Recv YRDPOS 148171
17-03-17 22:40:40.818 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:40.818 -07 000000512 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:40:40.838 -07 000000512 INF: Y Motor: After move to 72.362610, error = -0.013489, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:40:40.838 -07 000000512 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:40:40.838 -07 000000512 INF: Y Motor: Moved to 72.3491 after 1439 ms (table move)
17-03-17 22:40:40.838 -07 000000486 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173806 mm (DAC = 37968)
17-03-17 22:40:40.838 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:40.848 -07 000000512 INF: FPGA: Recv ZSGSRD 36345
17-03-17 22:40:40.848 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-17 22:40:40.848 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:40.848 -07 000000512 INF: FPGA: Recv ZSGSRD 36348
17-03-17 22:40:40.858 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:40:40.858 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:40.858 -07 000000623 INF: FPGA: Recv ZSGSRD 36347
17-03-17 22:40:40.868 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:40.868 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:40.868 -07 000000459 INF: FPGA: Recv ZSGSRD 36345
17-03-17 22:40:40.878 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:40.878 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:40.878 -07 000000623 INF: FPGA: Recv ZSGSRD 36346
17-03-17 22:40:40.888 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:40.888 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:40.888 -07 000000459 INF: FPGA: Recv ZSGSRD 36345
17-03-17 22:40:40.898 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:40.898 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:40.898 -07 000000459 INF: FPGA: Recv ZSGSRD 36348
17-03-17 22:40:40.908 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:40.908 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:40.908 -07 000000512 INF: FPGA: Recv ZSGSRD 36347
17-03-17 22:40:40.918 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:40.918 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:40.918 -07 000000459 INF: FPGA: Recv ZSGSRD 36341
17-03-17 22:40:40.928 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:40.928 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:40.928 -07 000000512 INF: FPGA: Recv ZSGSRD 36343
17-03-17 22:40:40.938 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:40.938 -07 000000486 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:40:40.938 -07 000000459 INF: FPGA: Recv ZPIEZORD 32613
17-03-17 22:40:40.948 -07 000000486 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:40.948 -07 000000486 INF: Z Motor: Piezo is near 49.7 V (nominally 0 to 100 V), expect near 57.9 V, since DAC is at 5.794 V. Piezo Error = -8.3 V.
17-03-17 22:40:40.948 -07 000000486 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.8 um, Read 10 ADC samples: Avg = 36346 (-172.9 uncal um), Error = 0.9 uncal um, Median = 36346 (-172.9 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 36341 (-172.9 uncal um), Max = 36348 (-172.9 uncal um), Pos Noise = 2 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 22:40:40.948 -07 000000486 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36346, posNoise = 2, negNoise = 5
17-03-17 22:40:40.948 -07 000000486 INF: Z Motor: After move to -0.173806, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:40:40.948 -07 000000486 INF: Z Motor: Settle wait time = 1442 ms, measure time = 102 ms (allowed 150 ms), total time = 1544 ms
17-03-17 22:40:40.948 -07 000000486 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 22:40:40.998 -07 000000486 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1596 ms
17-03-17 22:40:40.998 -07 000000486 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:40:40.998 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:40:40.998 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:40:40.998 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:40:40.998 -07 000000623 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:40:40.998 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:40:41.008 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:40:41.008 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:40:41.008 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:40:41.008 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:40:41.008 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:40:41.018 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 22:40:41.018 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 22:40:41.018 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:40:41.068 -07 000000623 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:40:41.258 -07 000000462 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:40:41.258 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:40:41.268 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:40:41.268 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1492093256, 0x0, 559484976) start.
17-03-17 22:40:41.298 -07 000000459 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:40:41.298 -07 000000512 INF: FPGA: Recv CAMSNAP
17-03-17 22:40:41.308 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 285 ms overall
17-03-17 22:40:41.378 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1492093256, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 22:40:41.378 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:40:41.378 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 22:40:41.378 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-17 22:40:41.408 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:40:41.408 -07 000000486 INF: Autofocus start
17-03-17 22:40:41.408 -07 000000486 INF: MeasureProfile start
17-03-17 22:40:41.408 -07 000000623 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:40:41.418 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:40:41.418 -07 000000462 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:40:41.418 -07 000000486 INF: MeasureProfile done
17-03-17 22:40:41.418 -07 000000486 INF: X=16  Z correction [um]=0.01042744
17-03-17 22:40:41.418 -07 000000486 INF: Autofocus finished
17-03-17 22:40:41.618 -07 000000512 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:40:41.618 -07 000000462 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:40:41.618 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.34912109375, Z-position -0.173817766515579. ----------
17-03-17 22:40:41.618 -07 000000610 INF: Cycle	66	Tile	16	Exposure Settings		A	457	G	220	T	220	C	457
17-03-17 22:40:41.628 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36483, sync = True, waitForSettling = True)
17-03-17 22:40:41.628 -07 000000610 INF: Z Motor: Moving to -0.167008 mm, started at -0.173818 mm, distance = 6.81 um
17-03-17 22:40:41.628 -07 000000610 INF: FPGA: Xmit ZDACW 36483\n [Z Motor]
17-03-17 22:40:41.628 -07 000000459 INF: FPGA: Recv ZDACW
17-03-17 22:40:41.638 -07 000000610 INF: FPGA: 'ZDACW 36483' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:40:41.638 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:40:41.638 -07 000000486 INF: FPGA: Recv ZDACR 36483
17-03-17 22:40:41.648 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:41.648 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:40:41.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:41.798 -07 000000462 INF: FPGA: Recv ZSGSRD 35293
17-03-17 22:40:41.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:40:41.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:41.808 -07 000000459 INF: FPGA: Recv ZSGSRD 35290
17-03-17 22:40:41.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:41.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:41.818 -07 000000623 INF: FPGA: Recv ZSGSRD 35287
17-03-17 22:40:41.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:41.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:41.828 -07 000000459 INF: FPGA: Recv ZSGSRD 35284
17-03-17 22:40:41.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:41.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:41.838 -07 000000512 INF: FPGA: Recv ZSGSRD 35285
17-03-17 22:40:41.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:41.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:41.848 -07 000000459 INF: FPGA: Recv ZSGSRD 35292
17-03-17 22:40:41.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:41.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:41.858 -07 000000512 INF: FPGA: Recv ZSGSRD 35283
17-03-17 22:40:41.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:41.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:41.868 -07 000000486 INF: FPGA: Recv ZSGSRD 35294
17-03-17 22:40:41.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:41.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:41.878 -07 000000623 INF: FPGA: Recv ZSGSRD 35287
17-03-17 22:40:41.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:41.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:41.888 -07 000000459 INF: FPGA: Recv ZSGSRD 35291
17-03-17 22:40:41.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:41.898 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:40:41.898 -07 000000512 INF: FPGA: Recv ZPIEZORD 31199
17-03-17 22:40:41.908 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:41.908 -07 000000610 INF: Z Motor: Piezo is near 46.6 V (nominally 0 to 100 V), expect near 55.7 V, since DAC is at 5.567 V. Piezo Error = -9.0 V.
17-03-17 22:40:41.908 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.0 um, Read 10 ADC samples: Avg = 35289 (-166.2 uncal um), Error = 0.8 uncal um, Median = 35288 (-166.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35283 (-166.1 uncal um), Max = 35294 (-166.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 22:40:41.908 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35289, posNoise = 5, negNoise = 6
17-03-17 22:40:41.908 -07 000000610 INF: Z Motor: After move to -0.167008, error = -0.000019, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:40:41.908 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 22:40:41.908 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:40:41.908 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:40:41.908 -07 000000459 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:40:41.908 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:40:41.908 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:40:41.908 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:40:41.908 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:40:41.908 -07 000000486 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:40:41.908 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:40:41.908 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:40:41.908 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:40:41.908 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:40:41.918 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 22:40:41.918 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:40:41.918 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 22:40:41.918 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:40:41.928 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 22:40:41.928 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 22:40:41.928 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 22:40:41.928 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 22:40:41.928 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 457 457 220 220 36660 150\n [Camera]
17-03-17 22:40:41.998 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:40:41.998 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 65. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1042, R2=1070, Total=2112. Warn if over 250 bubbles per interval.
17-03-17 22:40:42.128 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:40:42.588 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 649
17-03-17 22:40:42.588 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 649
17-03-17 22:40:42.588 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:40:42.588 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:40:42.588 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 22:40:42.588 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 649
17-03-17 22:40:42.588 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 649
17-03-17 22:40:42.588 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:40:42.588 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:40:42.588 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 22:40:42.778 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36660 842
17-03-17 22:40:42.928 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning grn on 992
17-03-17 22:40:42.988 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 401 ms.
17-03-17 22:40:42.988 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 22:40:42.988 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:40:42.988 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:40:42.988 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 22:40:42.988 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 402 ms.
17-03-17 22:40:42.988 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 22:40:42.988 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:40:42.998 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:40:43.008 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-17 22:40:43.148 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1212
17-03-17 22:40:43.148 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1212
17-03-17 22:40:43.148 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:40:43.148 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:40:43.148 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-17 22:40:43.148 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1212
17-03-17 22:40:43.148 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1212
17-03-17 22:40:43.148 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:40:43.148 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:40:43.148 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 22:40:43.338 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP 1404
17-03-17 22:40:43.338 -07 000000478 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:40:43.338 -07 000000610 INF: FPGA: 'CAMDBLSNAP 457 457 220 220 36660 150' command took 2 ms to send, 1405 ms to get response, and 1412 ms overall
17-03-17 22:40:43.338 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 22:40:43.338 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.34912109375, Z-Position -0.167027374281737. ------
17-03-17 22:40:43.458 -07 000000462 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.17346 mm
17-03-17 22:40:43.458 -07 000000462 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:40:43.458 -07 000000486 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:40:43.468 -07 000000502 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-17 22:40:43.468 -07 000000502 INF: Y Motor: Moving to 73.1926 mm, started at 72.3491 mm, delta = 0.8435 mm
17-03-17 22:40:43.468 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:40:43.468 -07 000000478 INF: Z Motor: Entering MoveAbsStepped (DAC = 37892, sync = True, waitForSettling = False)
17-03-17 22:40:43.468 -07 000000478 INF: Z Motor: Moving to -0.173458 mm, started at -0.167027 mm, distance = -6.43 um
17-03-17 22:40:43.468 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:40:43.468 -07 000000486 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 22:40:43.468 -07 000000438 INF: FPGA: Recv YRDPOS 148172
17-03-17 22:40:43.478 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:43.478 -07 000000478 INF: FPGA: Xmit ZDACW 37892\n [Z Motor]
17-03-17 22:40:43.478 -07 000000502 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:40:43.478 -07 000000438 INF: FPGA: Recv ZDACW
17-03-17 22:40:43.478 -07 000000502 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:40:43.478 -07 000000502 INF: Y Motor: Moving 1349 steps-28
17-03-17 22:40:43.488 -07 000000478 INF: FPGA: 'ZDACW 37892' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-17 22:40:43.488 -07 000000486 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:40:43.498 -07 000000502 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:40:43.508 -07 000000478 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:40:43.508 -07 000000512 INF: FPGA: Recv ZDACR 37892
17-03-17 22:40:43.518 -07 000000478 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:40:43.518 -07 000000478 INF: Z Motor: MoveAbsStepped took 48 ms (did NOT wait for settling yet))
17-03-17 22:40:43.548 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 400 ms.
17-03-17 22:40:43.548 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 22:40:43.548 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:40:43.548 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 398 ms.
17-03-17 22:40:43.548 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 22:40:43.548 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:40:43.548 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:40:43.558 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 22:40:43.558 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-17 22:40:43.558 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-17 22:40:43.688 -07 000000512 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:40:43.688 -07 000000486 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 222 ms overall
17-03-17 22:40:43.878 -07 000000608 INF: FPGA: Recv YMVTILE
17-03-17 22:40:43.878 -07 000000502 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 395 ms overall
17-03-17 22:40:43.908 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:40:43.918 -07 000000593 INF: FPGA: Recv YRDPOS 149863
17-03-17 22:40:43.928 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:40:43.928 -07 000000502 INF: Y Motor: Encoder = 149863 = motor step 117080.5 = 73.1753 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:40:43.928 -07 000000502 INF: Y Motor: Position error before settling (table move) = -35 encoder counts (-0.017 mm)
17-03-17 22:40:43.928 -07 000000502 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.843 mm, average velocity = 2.135 mm/sec
17-03-17 22:40:43.948 -07 000000593 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 66, FrontChillerTemperature: 3.969015,
17-03-17 22:40:44.878 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:40:44.878 -07 000000478 INF: FPGA: Recv YRDPOS 149864
17-03-17 22:40:44.888 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:40:44.888 -07 000000502 INF: Y Motor: Encoder = 149864 = motor step 117081.3 = 73.1758 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:40:44.908 -07 000000502 INF: Y Motor: After move to 73.192604, error = -0.016823, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:40:44.908 -07 000000502 INF: Y Motor: Position error after settling (table move) = -34 encoder counts (-0.017 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 22:40:44.908 -07 000000502 INF: Y Motor: Moved to 73.1758 after 1445 ms (table move)
17-03-17 22:40:44.908 -07 000000462 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173458 mm (DAC = 37892)
17-03-17 22:40:44.908 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:44.918 -07 000000593 INF: FPGA: Recv ZSGSRD 36297
17-03-17 22:40:44.918 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 22:40:44.918 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:44.918 -07 000000593 INF: FPGA: Recv ZSGSRD 36289
17-03-17 22:40:44.928 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:40:44.928 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:44.928 -07 000000459 INF: FPGA: Recv ZSGSRD 36294
17-03-17 22:40:44.938 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:44.938 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:44.938 -07 000000459 INF: FPGA: Recv ZSGSRD 36294
17-03-17 22:40:44.948 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:44.948 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:44.948 -07 000000459 INF: FPGA: Recv ZSGSRD 36297
17-03-17 22:40:44.958 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:44.958 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:44.958 -07 000000593 INF: FPGA: Recv ZSGSRD 36297
17-03-17 22:40:44.968 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:44.968 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:44.968 -07 000000502 INF: FPGA: Recv ZSGSRD 36290
17-03-17 22:40:44.978 -07 000000462 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:44.978 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:44.978 -07 000000502 INF: FPGA: Recv ZSGSRD 36294
17-03-17 22:40:44.988 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:44.988 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:44.988 -07 000000459 INF: FPGA: Recv ZSGSRD 36289
17-03-17 22:40:44.998 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:44.998 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:44.998 -07 000000459 INF: FPGA: Recv ZSGSRD 36289
17-03-17 22:40:45.008 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:45.008 -07 000000462 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:40:45.008 -07 000000512 INF: FPGA: Recv ZPIEZORD 32543
17-03-17 22:40:45.018 -07 000000462 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:45.018 -07 000000462 INF: Z Motor: Piezo is near 49.5 V (nominally 0 to 100 V), expect near 57.8 V, since DAC is at 5.782 V. Piezo Error = -8.3 V.
17-03-17 22:40:45.018 -07 000000462 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.5 um, Read 10 ADC samples: Avg = 36293 (-172.6 uncal um), Error = 0.9 uncal um, Median = 36294 (-172.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 36289 (-172.6 uncal um), Max = 36297 (-172.6 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 22:40:45.018 -07 000000462 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36293, posNoise = 4, negNoise = 4
17-03-17 22:40:45.018 -07 000000462 INF: Z Motor: After move to -0.173458, error = -0.000019, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:40:45.018 -07 000000462 INF: Z Motor: Settle wait time = 1447 ms, measure time = 102 ms (allowed 150 ms), total time = 1549 ms
17-03-17 22:40:45.018 -07 000000462 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 22:40:45.068 -07 000000462 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1602 ms
17-03-17 22:40:45.068 -07 000000462 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:40:45.068 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:40:45.068 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:40:45.068 -07 000000478 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:40:45.068 -07 000000623 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:40:45.068 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:40:45.068 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:40:45.068 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 22:40:45.068 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:40:45.078 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-17 22:40:45.078 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:40:45.078 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 22:40:45.078 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-17 22:40:45.088 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:40:45.128 -07 000000512 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:40:45.328 -07 000000501 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:40:45.328 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:40:45.328 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:40:45.328 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 22:40:45.368 -07 000000459 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:40:45.368 -07 000000608 INF: FPGA: Recv CAMSNAP
17-03-17 22:40:45.368 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 284 ms overall
17-03-17 22:40:45.448 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 22:40:45.448 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:40:45.448 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:40:45.448 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-17 22:40:45.468 -07 000000438 INF: Autofocus start
17-03-17 22:40:45.468 -07 000000438 INF: MeasureProfile start
17-03-17 22:40:45.468 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:40:45.468 -07 000000623 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:40:45.478 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:40:45.478 -07 000000462 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:40:45.478 -07 000000438 INF: MeasureProfile done
17-03-17 22:40:45.478 -07 000000438 INF: X=0  Z correction [um]=-0.0713522
17-03-17 22:40:45.478 -07 000000438 INF: Autofocus finished
17-03-17 22:40:45.678 -07 000000438 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:40:45.678 -07 000000462 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:40:45.678 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.17578125, Z-position -0.173477283272065. ----------
17-03-17 22:40:45.678 -07 000000610 INF: Cycle	66	Tile	17	Exposure Settings		A	457	G	220	T	220	C	457
17-03-17 22:40:45.688 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36389, sync = True, waitForSettling = True)
17-03-17 22:40:45.688 -07 000000610 INF: Z Motor: Moving to -0.166578 mm, started at -0.173477 mm, distance = 6.90 um
17-03-17 22:40:45.688 -07 000000610 INF: FPGA: Xmit ZDACW 36389\n [Z Motor]
17-03-17 22:40:45.688 -07 000000593 INF: FPGA: Recv ZDACW
17-03-17 22:40:45.698 -07 000000610 INF: FPGA: 'ZDACW 36389' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:45.698 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:40:45.698 -07 000000623 INF: FPGA: Recv ZDACR 36389
17-03-17 22:40:45.708 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:45.708 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:40:45.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:45.858 -07 000000462 INF: FPGA: Recv ZSGSRD 35218
17-03-17 22:40:45.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:45.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:45.868 -07 000000593 INF: FPGA: Recv ZSGSRD 35221
17-03-17 22:40:45.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:45.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:45.878 -07 000000623 INF: FPGA: Recv ZSGSRD 35224
17-03-17 22:40:45.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:45.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:45.888 -07 000000593 INF: FPGA: Recv ZSGSRD 35219
17-03-17 22:40:45.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:45.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:45.898 -07 000000623 INF: FPGA: Recv ZSGSRD 35224
17-03-17 22:40:45.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:45.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:45.908 -07 000000438 INF: FPGA: Recv ZSGSRD 35224
17-03-17 22:40:45.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:45.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:45.918 -07 000000462 INF: FPGA: Recv ZSGSRD 35216
17-03-17 22:40:45.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:45.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:45.928 -07 000000593 INF: FPGA: Recv ZSGSRD 35221
17-03-17 22:40:45.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:45.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:45.938 -07 000000438 INF: FPGA: Recv ZSGSRD 35215
17-03-17 22:40:45.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:45.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:45.948 -07 000000623 INF: FPGA: Recv ZSGSRD 35222
17-03-17 22:40:45.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:45.958 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:40:45.958 -07 000000462 INF: FPGA: Recv ZPIEZORD 31105
17-03-17 22:40:45.968 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:45.968 -07 000000610 INF: Z Motor: Piezo is near 46.4 V (nominally 0 to 100 V), expect near 55.5 V, since DAC is at 5.553 V. Piezo Error = -9.1 V.
17-03-17 22:40:45.968 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.6 um, Read 10 ADC samples: Avg = 35220 (-165.7 uncal um), Error = 0.9 uncal um, Median = 35221 (-165.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35215 (-165.7 uncal um), Max = 35224 (-165.7 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 22:40:45.968 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35220, posNoise = 4, negNoise = 5
17-03-17 22:40:45.968 -07 000000610 INF: Z Motor: After move to -0.166578, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:40:45.968 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 22:40:45.968 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:40:45.968 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:40:45.968 -07 000000623 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:40:45.968 -07 000000593 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:40:45.968 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:40:45.968 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:40:45.968 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 22:40:45.968 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:40:45.968 -07 000000623 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:40:45.968 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:40:45.968 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:40:45.978 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:40:45.978 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:40:45.978 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:40:45.978 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 22:40:45.978 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:40:45.988 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 22:40:45.988 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 22:40:45.988 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 22:40:45.988 -07 000000623 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms.
17-03-17 22:40:45.988 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 457 457 220 220 36566 150\n [Camera]
17-03-17 22:40:46.188 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:40:46.648 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 649
17-03-17 22:40:46.648 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 649
17-03-17 22:40:46.648 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:40:46.648 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 649
17-03-17 22:40:46.648 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 649
17-03-17 22:40:46.648 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:40:46.648 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:40:46.648 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-17 22:40:46.658 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:40:46.658 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-17 22:40:46.838 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36566 842
17-03-17 22:40:46.988 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP turning grn on 993
17-03-17 22:40:46.998 -07 000000593 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:40:46.998 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 65. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1042, R2=1070, Total=2112. Warn if over 250 bubbles per interval.
17-03-17 22:40:47.028 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 378 ms.
17-03-17 22:40:47.028 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-17 22:40:47.028 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:40:47.028 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 376 ms.
17-03-17 22:40:47.028 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-17 22:40:47.038 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:40:47.038 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:40:47.038 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 22:40:47.038 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:40:47.048 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 22:40:47.208 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1212
17-03-17 22:40:47.208 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1212
17-03-17 22:40:47.208 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:40:47.218 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1212
17-03-17 22:40:47.218 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1212
17-03-17 22:40:47.218 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:40:47.218 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:40:47.218 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start.
17-03-17 22:40:47.228 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:40:47.228 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 22:40:47.398 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP 1405
17-03-17 22:40:47.398 -07 000000462 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:40:47.398 -07 000000610 INF: FPGA: 'CAMDBLSNAP 457 457 220 220 36566 150' command took 2 ms to send, 1409 ms to get response, and 1412 ms overall
17-03-17 22:40:47.408 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 22:40:47.408 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.17578125, Z-Position -0.166584103643956. ------
17-03-17 22:40:47.408 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:40:47.408 -07 000000502 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.17305 mm
17-03-17 22:40:47.408 -07 000000502 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:40:47.408 -07 000000462 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-17 22:40:47.408 -07 000000462 INF: Y Motor: Moving to 74.0226 mm, started at 73.1758 mm, delta = 0.8468 mm
17-03-17 22:40:47.408 -07 000000623 INF: Z Motor: Entering MoveAbsStepped (DAC = 37803, sync = True, waitForSettling = False)
17-03-17 22:40:47.408 -07 000000623 INF: Z Motor: Moving to -0.173051 mm, started at -0.166584 mm, distance = -6.47 um
17-03-17 22:40:47.408 -07 000000486 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:40:47.418 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:40:47.418 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 22:40:47.418 -07 000000486 INF: FPGA: Recv YRDPOS 149864
17-03-17 22:40:47.428 -07 000000623 INF: FPGA: Xmit ZDACW 37803\n [Z Motor]
17-03-17 22:40:47.428 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 22:40:47.428 -07 000000462 INF: Y Motor: Encoder = 149864 = motor step 117081.3 = 73.1758 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:40:47.428 -07 000000462 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:40:47.428 -07 000000462 INF: Y Motor: Moving 1355 steps-35
17-03-17 22:40:47.428 -07 000000593 INF: FPGA: Recv ZDACW
17-03-17 22:40:47.438 -07 000000576 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:40:47.438 -07 000000623 INF: FPGA: 'ZDACW 37803' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-17 22:40:47.558 -07 000000462 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:40:47.568 -07 000000623 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:40:47.568 -07 000000608 INF: FPGA: Recv ZDACR 37803
17-03-17 22:40:47.578 -07 000000623 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-17 22:40:47.578 -07 000000623 INF: Z Motor: MoveAbsStepped took 162 ms (did NOT wait for settling yet))
17-03-17 22:40:47.608 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 380 ms.
17-03-17 22:40:47.608 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-17 22:40:47.608 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:40:47.608 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 388 ms.
17-03-17 22:40:47.608 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 22:40:47.608 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:40:47.608 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:40:47.618 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:40:47.618 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 22:40:47.618 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 22:40:47.638 -07 000000593 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:40:47.638 -07 000000576 INF: FPGA: 'FOCMRRFOC' command took 115 ms to send, 82 ms to get response, and 222 ms overall
17-03-17 22:40:47.928 -07 000000458 INF: FPGA: Recv YMVTILE
17-03-17 22:40:47.928 -07 000000462 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 507 ms overall
17-03-17 22:40:47.968 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:40:47.968 -07 000000501 INF: FPGA: Recv YRDPOS 151567
17-03-17 22:40:47.978 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:40:47.978 -07 000000462 INF: Y Motor: Encoder = 151567 = motor step 118411.7 = 74.0073 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:40:47.978 -07 000000462 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-17 22:40:47.978 -07 000000462 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 507 ms, distance = 0.847 mm, average velocity = 1.670 mm/sec
17-03-17 22:40:48.928 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:40:48.928 -07 000000593 INF: FPGA: Recv YRDPOS 151568
17-03-17 22:40:48.938 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:48.938 -07 000000462 INF: Y Motor: Encoder = 151568 = motor step 118412.5 = 74.0078 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:40:48.948 -07 000000462 INF: Y Motor: After move to 74.022606, error = -0.014793, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:40:48.948 -07 000000462 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 22:40:48.948 -07 000000462 INF: Y Motor: Moved to 74.0078 after 1541 ms (table move)
17-03-17 22:40:48.958 -07 000000502 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173051 mm (DAC = 37803)
17-03-17 22:40:48.958 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:48.958 -07 000000458 INF: FPGA: Recv ZSGSRD 36226
17-03-17 22:40:48.968 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:40:48.968 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:48.968 -07 000000501 INF: FPGA: Recv ZSGSRD 36226
17-03-17 22:40:48.978 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:48.978 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:48.978 -07 000000458 INF: FPGA: Recv ZSGSRD 36232
17-03-17 22:40:48.988 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:48.998 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:48.998 -07 000000415 INF: FPGA: Recv ZSGSRD 36232
17-03-17 22:40:49.008 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:40:49.008 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:49.008 -07 000000458 INF: FPGA: Recv ZSGSRD 36226
17-03-17 22:40:49.018 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:49.018 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:49.018 -07 000000458 INF: FPGA: Recv ZSGSRD 36220
17-03-17 22:40:49.028 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:49.028 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:49.028 -07 000000458 INF: FPGA: Recv ZSGSRD 36230
17-03-17 22:40:49.038 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:49.038 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:49.038 -07 000000458 INF: FPGA: Recv ZSGSRD 36228
17-03-17 22:40:49.048 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:49.048 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:49.048 -07 000000541 INF: FPGA: Recv ZSGSRD 36232
17-03-17 22:40:49.058 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:49.058 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:49.058 -07 000000462 INF: FPGA: Recv ZSGSRD 36230
17-03-17 22:40:49.068 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:40:49.068 -07 000000502 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:40:49.068 -07 000000462 INF: FPGA: Recv ZPIEZORD 32475
17-03-17 22:40:49.078 -07 000000502 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:49.078 -07 000000502 INF: Z Motor: Piezo is near 49.4 V (nominally 0 to 100 V), expect near 57.7 V, since DAC is at 5.768 V. Piezo Error = -8.3 V.
17-03-17 22:40:49.078 -07 000000502 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.1 um, Read 10 ADC samples: Avg = 36228 (-172.2 uncal um), Error = 0.9 uncal um, Median = 36229 (-172.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36220 (-172.1 uncal um), Max = 36232 (-172.2 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 22:40:49.078 -07 000000502 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36228, posNoise = 4, negNoise = 8
17-03-17 22:40:49.078 -07 000000502 INF: Z Motor: After move to -0.173051, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:40:49.078 -07 000000502 INF: Z Motor: Settle wait time = 1543 ms, measure time = 119 ms (allowed 150 ms), total time = 1662 ms
17-03-17 22:40:49.078 -07 000000502 INF: Z Motor: Waiting extra 31 ms after reading position to reach expected total of 150 ms
17-03-17 22:40:49.118 -07 000000502 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1704 ms
17-03-17 22:40:49.118 -07 000000502 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:40:49.118 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:40:49.118 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:40:49.118 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:40:49.118 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:40:49.118 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:40:49.118 -07 000000458 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:40:49.118 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:40:49.118 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:40:49.128 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:40:49.128 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:40:49.128 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 22:40:49.128 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 22:40:49.138 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:40:49.178 -07 000000623 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:40:49.308 -07 000000459 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 66, FrontChillerTemperature: 3.981281,
17-03-17 22:40:49.378 -07 000000459 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:40:49.378 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:40:49.378 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:40:49.378 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 22:40:49.418 -07 000000623 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:40:49.418 -07 000000593 INF: FPGA: Recv CAMSNAP
17-03-17 22:40:49.418 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 285 ms overall
17-03-17 22:40:49.498 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 119 ms.
17-03-17 22:40:49.498 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:40:49.508 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 22:40:49.508 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 123 ms.
17-03-17 22:40:49.518 -07 000000486 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:40:49.518 -07 000000501 INF: Autofocus start
17-03-17 22:40:49.518 -07 000000501 INF: MeasureProfile start
17-03-17 22:40:49.518 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:40:49.528 -07 000000486 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:40:49.528 -07 000000486 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:40:49.538 -07 000000501 INF: MeasureProfile done
17-03-17 22:40:49.538 -07 000000501 INF: X=16  Z correction [um]=0.01042744
17-03-17 22:40:49.538 -07 000000501 INF: Autofocus finished
17-03-17 22:40:49.728 -07 000000462 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:40:49.728 -07 000000486 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-17 22:40:49.728 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.0078125, Z-position -0.173059709482851. ----------
17-03-17 22:40:49.728 -07 000000610 INF: Cycle	66	Tile	18	Exposure Settings		A	457	G	220	T	220	C	457
17-03-17 22:40:49.738 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36318, sync = True, waitForSettling = True)
17-03-17 22:40:49.738 -07 000000610 INF: Z Motor: Moving to -0.166253 mm, started at -0.173060 mm, distance = 6.81 um
17-03-17 22:40:49.758 -07 000000610 INF: FPGA: Xmit ZDACW 36318\n [Z Motor]
17-03-17 22:40:49.758 -07 000000486 INF: FPGA: Recv ZDACW
17-03-17 22:40:49.768 -07 000000610 INF: FPGA: 'ZDACW 36318' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-17 22:40:49.768 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:40:49.768 -07 000000462 INF: FPGA: Recv ZDACR 36318
17-03-17 22:40:49.778 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:49.778 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:40:49.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:49.928 -07 000000486 INF: FPGA: Recv ZSGSRD 35172
17-03-17 22:40:49.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:40:49.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:49.938 -07 000000462 INF: FPGA: Recv ZSGSRD 35177
17-03-17 22:40:49.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:49.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:49.948 -07 000000462 INF: FPGA: Recv ZSGSRD 35173
17-03-17 22:40:49.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:49.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:49.958 -07 000000462 INF: FPGA: Recv ZSGSRD 35175
17-03-17 22:40:49.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:49.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:49.968 -07 000000462 INF: FPGA: Recv ZSGSRD 35173
17-03-17 22:40:49.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:49.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:49.978 -07 000000462 INF: FPGA: Recv ZSGSRD 35171
17-03-17 22:40:49.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:49.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:49.988 -07 000000462 INF: FPGA: Recv ZSGSRD 35165
17-03-17 22:40:49.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:49.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:49.998 -07 000000462 INF: FPGA: Recv ZSGSRD 35169
17-03-17 22:40:50.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:50.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:50.008 -07 000000462 INF: FPGA: Recv ZSGSRD 35169
17-03-17 22:40:50.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:50.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:50.018 -07 000000462 INF: FPGA: Recv ZSGSRD 35173
17-03-17 22:40:50.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:50.028 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:40:50.028 -07 000000462 INF: FPGA: Recv ZPIEZORD 31063
17-03-17 22:40:50.038 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 1 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:40:50.038 -07 000000610 INF: Z Motor: Piezo is near 46.4 V (nominally 0 to 100 V), expect near 55.4 V, since DAC is at 5.542 V. Piezo Error = -9.1 V.
17-03-17 22:40:50.038 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.3 um, Read 10 ADC samples: Avg = 35172 (-165.4 uncal um), Error = 0.8 uncal um, Median = 35172 (-165.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35165 (-165.4 uncal um), Max = 35177 (-165.4 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 22:40:50.038 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35172, posNoise = 5, negNoise = 7
17-03-17 22:40:50.038 -07 000000610 INF: Z Motor: After move to -0.166253, error = -0.000023, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:40:50.038 -07 000000610 INF: Z Motor: MoveAbsStepped took 301 ms)
17-03-17 22:40:50.038 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:40:50.038 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:40:50.038 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:40:50.048 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:40:50.048 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:40:50.048 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:40:50.048 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:40:50.048 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:40:50.058 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:40:50.058 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:40:50.068 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 22:40:50.068 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 18 ms.
17-03-17 22:40:50.068 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:40:50.068 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:40:50.068 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 22:40:50.068 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:40:50.078 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 22:40:50.078 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:40:50.078 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 22:40:50.078 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 12 ms.
17-03-17 22:40:50.088 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 457 457 220 220 36494 150\n [Camera]
17-03-17 22:40:50.288 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:40:50.738 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 649
17-03-17 22:40:50.738 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 649
17-03-17 22:40:50.738 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:40:50.748 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 649
17-03-17 22:40:50.748 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 649
17-03-17 22:40:50.748 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:40:50.748 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:40:50.748 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-17 22:40:50.748 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:40:50.748 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-17 22:40:50.938 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36494 842
17-03-17 22:40:51.088 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning grn on 992
17-03-17 22:40:51.138 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 389 ms.
17-03-17 22:40:51.138 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 22:40:51.138 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:40:51.138 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 393 ms.
17-03-17 22:40:51.138 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 22:40:51.138 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:40:51.148 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:40:51.148 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:40:51.148 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 22:40:51.148 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-17 22:40:51.308 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1212
17-03-17 22:40:51.308 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1212
17-03-17 22:40:51.308 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:40:51.308 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:40:51.308 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 656674232, 0x0, 391868352) start.
17-03-17 22:40:51.308 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1212
17-03-17 22:40:51.308 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1212
17-03-17 22:40:51.308 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:40:51.308 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:40:51.308 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1439795928, 0x0, 418435064) start.
17-03-17 22:40:51.498 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP 1405
17-03-17 22:40:51.498 -07 000000576 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:40:51.498 -07 000000610 INF: FPGA: 'CAMDBLSNAP 457 457 220 220 36494 150' command took 2 ms to send, 1403 ms to get response, and 1412 ms overall
17-03-17 22:40:51.498 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 22:40:51.498 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.0078125, Z-Position -0.166275741461151. ------
17-03-17 22:40:51.498 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:40:51.498 -07 000000438 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.17267 mm
17-03-17 22:40:51.498 -07 000000438 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:40:51.508 -07 000000608 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-17 22:40:51.508 -07 000000608 INF: Y Motor: Moving to 74.8526 mm, started at 74.0078 mm, delta = 0.8448 mm
17-03-17 22:40:51.508 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:40:51.508 -07 000000576 INF: Z Motor: Entering MoveAbsStepped (DAC = 37720, sync = True, waitForSettling = False)
17-03-17 22:40:51.508 -07 000000576 INF: Z Motor: Moving to -0.172671 mm, started at -0.166276 mm, distance = -6.40 um
17-03-17 22:40:51.508 -07 000000415 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:40:51.508 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 22:40:51.508 -07 000000623 INF: FPGA: Recv YRDPOS 151568
17-03-17 22:40:51.518 -07 000000501 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:40:51.518 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:51.518 -07 000000608 INF: Y Motor: Encoder = 151568 = motor step 118412.5 = 74.0078 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:40:51.518 -07 000000608 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:40:51.518 -07 000000608 INF: Y Motor: Moving 1352 steps-31
17-03-17 22:40:51.528 -07 000000576 INF: FPGA: Xmit ZDACW 37720\n [Z Motor]
17-03-17 22:40:51.528 -07 000000512 INF: FPGA: Recv ZDACW
17-03-17 22:40:51.538 -07 000000576 INF: FPGA: 'ZDACW 37720' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-17 22:40:51.538 -07 000000608 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:40:51.548 -07 000000576 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:40:51.548 -07 000000623 INF: FPGA: Recv ZDACR 37720
17-03-17 22:40:51.558 -07 000000576 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:40:51.558 -07 000000576 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-17 22:40:51.708 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 656674232, 0x0, 391868352) end. Duration was 401 ms.
17-03-17 22:40:51.708 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 22:40:51.708 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:40:51.708 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1439795928, 0x0, 418435064) end. Duration was 400 ms.
17-03-17 22:40:51.708 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 22:40:51.708 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:40:51.718 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:40:51.718 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-17 22:40:51.718 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:40:51.718 -07 000000415 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:40:51.718 -07 000000501 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 210 ms overall
17-03-17 22:40:51.718 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-17 22:40:51.908 -07 000000512 INF: FPGA: Recv YMVTILE
17-03-17 22:40:51.908 -07 000000608 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-17 22:40:51.938 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:40:51.938 -07 000000501 INF: FPGA: Recv YRDPOS 153255
17-03-17 22:40:51.948 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:40:51.948 -07 000000608 INF: Y Motor: Encoder = 153255 = motor step 119730.5 = 74.8315 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:40:51.948 -07 000000608 INF: Y Motor: Position error before settling (table move) = -43 encoder counts (-0.021 mm)
17-03-17 22:40:51.948 -07 000000608 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.845 mm, average velocity = 2.139 mm/sec
17-03-17 22:40:51.998 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:40:51.998 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 65. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1042, R2=1070, Total=2112. Warn if over 250 bubbles per interval.
17-03-17 22:40:52.898 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:40:52.898 -07 000000415 INF: FPGA: Recv YRDPOS 153255
17-03-17 22:40:52.908 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:40:52.908 -07 000000608 INF: Y Motor: Encoder = 153255 = motor step 119730.5 = 74.8315 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:40:52.918 -07 000000608 INF: Y Motor: After move to 74.852608, error = -0.021065, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:40:52.918 -07 000000608 INF: Y Motor: Position error after settling (table move) = -43 encoder counts (-0.021 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:40:52.918 -07 000000608 INF: Y Motor: Moved to 74.8315 after 1415 ms (table move)
17-03-17 22:40:52.928 -07 000000438 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172671 mm (DAC = 37720)
17-03-17 22:40:52.928 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:52.928 -07 000000415 INF: FPGA: Recv ZSGSRD 36166
17-03-17 22:40:52.938 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:52.938 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:52.938 -07 000000501 INF: FPGA: Recv ZSGSRD 36167
17-03-17 22:40:52.948 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:52.948 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:52.948 -07 000000623 INF: FPGA: Recv ZSGSRD 36166
17-03-17 22:40:52.958 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:52.958 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:52.958 -07 000000462 INF: FPGA: Recv ZSGSRD 36166
17-03-17 22:40:52.968 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:52.968 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:52.968 -07 000000623 INF: FPGA: Recv ZSGSRD 36170
17-03-17 22:40:52.978 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:52.978 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:52.978 -07 000000502 INF: FPGA: Recv ZSGSRD 36175
17-03-17 22:40:52.988 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:52.988 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:52.988 -07 000000623 INF: FPGA: Recv ZSGSRD 36178
17-03-17 22:40:52.998 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:52.998 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:52.998 -07 000000462 INF: FPGA: Recv ZSGSRD 36167
17-03-17 22:40:53.008 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:53.008 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:53.008 -07 000000623 INF: FPGA: Recv ZSGSRD 36164
17-03-17 22:40:53.018 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:53.018 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:53.018 -07 000000415 INF: FPGA: Recv ZSGSRD 36165
17-03-17 22:40:53.028 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:53.028 -07 000000438 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:40:53.938 -07 000000593 INF: FPGA: Recv ZPIEZORD 32381
17-03-17 22:40:53.938 -07 000000438 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 900 ms to get response, and 910 ms overall
17-03-17 22:40:53.938 -07 000000438 INF: Z Motor: Piezo is near 49.2 V (nominally 0 to 100 V), expect near 57.6 V, since DAC is at 5.756 V. Piezo Error = -8.4 V.
17-03-17 22:40:53.938 -07 000000438 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.7 um, Read 10 ADC samples: Avg = 36168 (-171.8 uncal um), Error = 0.9 uncal um, Median = 36166 (-171.8 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36164 (-171.8 uncal um), Max = 36178 (-171.9 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 22:40:53.938 -07 000000438 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36168, posNoise = 10, negNoise = 4
17-03-17 22:40:53.938 -07 000000438 INF: Z Motor: After move to -0.172671, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:40:53.938 -07 000000438 INF: Z Motor: Settle wait time = 1418 ms, measure time = 1011 ms (allowed 150 ms), total time = 2429 ms
17-03-17 22:40:53.938 -07 000000438 INF: Z Motor: Warning: Actual position measuring time = 1011 ms, longer than max expected time of 150 ms
17-03-17 22:40:53.938 -07 000000438 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2433 ms
17-03-17 22:40:53.938 -07 000000438 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:40:53.938 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:40:53.938 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:40:53.938 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:40:53.938 -07 000000593 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:40:53.948 -07 000000415 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:40:53.948 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:40:53.948 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:40:53.948 -07 000000415 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:40:53.948 -07 000000415 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:40:53.948 -07 000000415 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:40:53.958 -07 000000415 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 22:40:53.958 -07 000000415 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 22:40:53.958 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:40:53.998 -07 000000541 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:40:54.198 -07 000000415 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:40:54.198 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:40:54.198 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:40:54.198 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1475218192, 0x0, 559484976) start.
17-03-17 22:40:54.238 -07 000000541 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:40:54.238 -07 000000512 INF: FPGA: Recv CAMSNAP
17-03-17 22:40:54.238 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 284 ms overall
17-03-17 22:40:54.328 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1475218192, 0x0, 559484976) end. Duration was 121 ms.
17-03-17 22:40:54.328 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:40:54.328 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 22:40:54.328 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 123 ms.
17-03-17 22:40:54.438 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:40:54.438 -07 000000593 INF: Autofocus start
17-03-17 22:40:54.438 -07 000000593 INF: MeasureProfile start
17-03-17 22:40:54.438 -07 000000541 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:40:54.448 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 22:40:54.448 -07 000000502 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:40:54.448 -07 000000593 INF: MeasureProfile done
17-03-17 22:40:54.448 -07 000000593 INF: X=16  Z correction [um]=0.01042744
17-03-17 22:40:54.448 -07 000000593 INF: Autofocus finished
17-03-17 22:40:54.648 -07 000000512 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:40:54.648 -07 000000502 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:40:54.648 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83154296875, Z-position -0.172674256754345. ----------
17-03-17 22:40:54.648 -07 000000610 INF: Cycle	66	Tile	19	Exposure Settings		A	457	G	220	T	220	C	457
17-03-17 22:40:54.658 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36235, sync = True, waitForSettling = True)
17-03-17 22:40:54.658 -07 000000610 INF: Z Motor: Moving to -0.165873 mm, started at -0.172674 mm, distance = 6.80 um
17-03-17 22:40:54.668 -07 000000610 INF: FPGA: Xmit ZDACW 36235\n [Z Motor]
17-03-17 22:40:54.668 -07 000000593 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 66, FrontChillerTemperature: 4.016692,
17-03-17 22:40:54.668 -07 000000512 INF: FPGA: Recv ZDACW
17-03-17 22:40:54.678 -07 000000610 INF: FPGA: 'ZDACW 36235' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-17 22:40:54.688 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:40:54.688 -07 000000512 INF: FPGA: Recv ZDACR 36235
17-03-17 22:40:54.698 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:40:54.698 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:40:54.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:54.848 -07 000000501 INF: FPGA: Recv ZSGSRD 35110
17-03-17 22:40:54.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:40:54.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:54.858 -07 000000593 INF: FPGA: Recv ZSGSRD 35108
17-03-17 22:40:54.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:54.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:54.868 -07 000000502 INF: FPGA: Recv ZSGSRD 35115
17-03-17 22:40:54.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:54.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:54.878 -07 000000438 INF: FPGA: Recv ZSGSRD 35110
17-03-17 22:40:54.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:54.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:54.888 -07 000000608 INF: FPGA: Recv ZSGSRD 35109
17-03-17 22:40:54.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:54.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:54.898 -07 000000593 INF: FPGA: Recv ZSGSRD 35113
17-03-17 22:40:54.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:54.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:54.908 -07 000000502 INF: FPGA: Recv ZSGSRD 35110
17-03-17 22:40:54.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:54.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:54.918 -07 000000462 INF: FPGA: Recv ZSGSRD 35111
17-03-17 22:40:54.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:54.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:54.928 -07 000000415 INF: FPGA: Recv ZSGSRD 35109
17-03-17 22:40:54.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:54.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:40:54.938 -07 000000501 INF: FPGA: Recv ZSGSRD 35107
17-03-17 22:40:54.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:54.948 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:40:54.948 -07 000000608 INF: FPGA: Recv ZPIEZORD 30967
17-03-17 22:40:54.958 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:54.958 -07 000000610 INF: Z Motor: Piezo is near 46.2 V (nominally 0 to 100 V), expect near 55.3 V, since DAC is at 5.529 V. Piezo Error = -9.1 V.
17-03-17 22:40:54.958 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -165.9 um, Read 10 ADC samples: Avg = 35110 (-165.0 uncal um), Error = 0.9 uncal um, Median = 35110 (-165.0 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35107 (-165.0 uncal um), Max = 35115 (-165.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 22:40:54.958 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35110, posNoise = 5, negNoise = 3
17-03-17 22:40:54.958 -07 000000610 INF: Z Motor: After move to -0.165873, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:40:54.958 -07 000000610 INF: Z Motor: MoveAbsStepped took 298 ms)
17-03-17 22:40:54.958 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:40:54.958 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:40:54.958 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:40:54.958 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:40:54.958 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:40:54.958 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:40:54.958 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:40:54.958 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:40:54.958 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:40:54.958 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:40:54.958 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:40:54.958 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:40:54.968 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:40:54.968 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:40:54.968 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:40:54.968 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:40:54.978 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 22:40:54.978 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 22:40:54.978 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 22:40:54.978 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 22:40:54.978 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 457 457 220 220 36412 150\n [Camera]
17-03-17 22:40:55.178 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning red on 194
17-03-17 22:40:55.638 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 649
17-03-17 22:40:55.638 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 649
17-03-17 22:40:55.638 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:40:55.638 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:40:55.638 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 1165594328, 0x0, 391868352) start.
17-03-17 22:40:55.638 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 649
17-03-17 22:40:55.638 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 649
17-03-17 22:40:55.638 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:40:55.638 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:40:55.638 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 22:40:55.828 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36412 842
17-03-17 22:40:55.978 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning grn on 994
17-03-17 22:40:56.038 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 1165594328, 0x0, 391868352) end. Duration was 399 ms.
17-03-17 22:40:56.038 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 22:40:56.038 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:40:56.038 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 400 ms.
17-03-17 22:40:56.038 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 22:40:56.038 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:40:56.038 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:40:56.038 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 22:40:56.038 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:40:56.048 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-17 22:40:56.198 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1212
17-03-17 22:40:56.198 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1212
17-03-17 22:40:56.198 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:40:56.198 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:40:56.198 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-17 22:40:56.198 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1212
17-03-17 22:40:56.198 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1212
17-03-17 22:40:56.198 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:40:56.198 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:40:56.198 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 22:40:56.398 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP 1409
17-03-17 22:40:56.398 -07 000000462 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:40:56.398 -07 000000610 INF: FPGA: 'CAMDBLSNAP 457 457 220 220 36412 150' command took 2 ms to send, 1410 ms to get response, and 1416 ms overall
17-03-17 22:40:56.598 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 403 ms.
17-03-17 22:40:56.598 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 22:40:56.598 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:40:56.608 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 403 ms.
17-03-17 22:40:56.608 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-17 22:40:56.608 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:40:56.608 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:40:56.608 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 22:40:56.608 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-17 22:40:56.608 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-17 22:40:56.618 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-17 22:40:56.658 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 42 ms.
17-03-17 22:40:56.658 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-17 22:40:56.698 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 43 ms.
17-03-17 22:40:56.698 -07 000000610 INF: Move compensator for Bottom-surface imaging.
17-03-17 22:40:56.698 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-17 22:40:56.828 -07 000000501 INF: FPGA: Recv EMCUR 
17-03-17 22:40:56.828 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 132 ms overall
17-03-17 22:40:56.828 -07 000000610 INF: FPGA: Xmit EMIN 20 40\n [Compensator]
17-03-17 22:40:56.998 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:40:56.998 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 65. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1042, R2=1070, Total=2112. Warn if over 250 bubbles per interval.
17-03-17 22:40:57.338 -07 000000501 INF: FPGA: Recv EMIN
17-03-17 22:40:57.338 -07 000000610 INF: FPGA: 'EMIN 20 40' command took 0 ms to send, 500 ms to get response, and 502 ms overall
17-03-17 22:40:57.338 -07 000000610 INF: FPGA: Xmit EMCUR 60\n [Compensator]
17-03-17 22:40:57.338 -07 000000593 INF: FPGA: Recv EMCUR 
17-03-17 22:40:57.348 -07 000000610 INF: FPGA: 'EMCUR 60' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:40:57.348 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 22:40:57.348 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 74.83154296875, Z-Position -0.165877440308362. ------
17-03-17 22:40:57.348 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:40:57.348 -07 000000415 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.14030 mm
17-03-17 22:40:57.348 -07 000000415 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:40:57.358 -07 000000593 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:40:57.358 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 22:40:57.358 -07 000000502 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-17 22:40:57.358 -07 000000502 INF: Y Motor: Moving to 59.9126 mm, started at 74.8315 mm, delta = -14.9189 mm
17-03-17 22:40:57.358 -07 000000501 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:40:57.358 -07 000000478 INF: Z Motor: Entering MoveAbsStepped (DAC = 30648, sync = True, waitForSettling = False)
17-03-17 22:40:57.358 -07 000000478 INF: Z Motor: Moving to -0.140298 mm, started at -0.165877 mm, distance = 25.58 um
17-03-17 22:40:57.368 -07 000000478 INF: FPGA: Xmit ZDACW 30648\n [Z Motor]
17-03-17 22:40:57.368 -07 000000608 INF: FPGA: Recv ZDACW
17-03-17 22:40:57.378 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:40:57.378 -07 000000478 INF: FPGA: 'ZDACW 30648' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-17 22:40:57.378 -07 000000459 INF: FPGA: Recv YRDPOS 153257
17-03-17 22:40:57.388 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-17 22:40:57.388 -07 000000502 INF: Y Motor: Encoder = 153257 = motor step 119732.0 = 74.8325 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:40:57.388 -07 000000478 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:40:57.388 -07 000000608 INF: FPGA: Recv ZDACR 30648
17-03-17 22:40:57.388 -07 000000502 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = -14.9400 mm (-23904.0 steps). UsingTableMove = False
17-03-17 22:40:57.388 -07 000000502 INF: Y Motor: Moving to 122701 encoder counts
17-03-17 22:40:57.398 -07 000000478 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:40:57.398 -07 000000502 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-17 22:40:57.398 -07 000000478 INF: Z Motor: MoveAbsStepped took 37 ms (did NOT wait for settling yet))
17-03-17 22:40:57.558 -07 000000438 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:40:57.558 -07 000000501 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 203 ms overall
17-03-17 22:40:59.018 -07 000000501 INF: FPGA: Recv YMVTO 122702 23904
17-03-17 22:40:59.018 -07 000000502 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1618 ms to get response, and 1632 ms overall
17-03-17 22:40:59.018 -07 000000502 INF: Y Motor: Position error before settling = 1 encoder counts (0.000 mm)
17-03-17 22:40:59.018 -07 000000502 INF: Y Motor: To move from 74.833 to 59.913 (-14.919 mm) should take 23872 steps, but required 23904 steps (14.940 mm). Slippage = 0.020 mm (0.00%).
17-03-17 22:40:59.018 -07 000000502 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1633 ms, distance = 14.919 mm, average velocity = 9.136 mm/sec
17-03-17 22:41:00.048 -07 000000593 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 66, FrontChillerTemperature: 4.037119,
17-03-17 22:41:01.868 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:41:01.868 -07 000000593 INF: FPGA: Recv YRDPOS 122697
17-03-17 22:41:01.878 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:41:01.878 -07 000000502 INF: Y Motor: Encoder = 122697 = motor step 95857.0 = 59.9106 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:41:01.908 -07 000000502 INF: Y Motor: After move to 59.912609, error = -0.001965, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:41:01.908 -07 000000502 INF: Y Motor: Position error after settling = -4 encoder counts (-0.002 mm), Delta during settling = -5 counts (-0.002 mm)
17-03-17 22:41:01.908 -07 000000502 INF: Y Motor: Moved to 59.9106 after 4551 ms
17-03-17 22:41:01.908 -07 000000415 INF: Z Motor: EndOfMoveAbsStepped: target = -0.140298 mm (DAC = 30648)
17-03-17 22:41:01.908 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:01.908 -07 000000608 INF: FPGA: Recv ZSGSRD 31134
17-03-17 22:41:01.918 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:41:01.918 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:01.918 -07 000000608 INF: FPGA: Recv ZSGSRD 31130
17-03-17 22:41:01.928 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:01.928 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:01.928 -07 000000512 INF: FPGA: Recv ZSGSRD 31127
17-03-17 22:41:01.938 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:01.938 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:01.938 -07 000000462 INF: FPGA: Recv ZSGSRD 31129
17-03-17 22:41:01.948 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:01.948 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:01.948 -07 000000462 INF: FPGA: Recv ZSGSRD 31126
17-03-17 22:41:01.958 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:01.958 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:01.958 -07 000000502 INF: FPGA: Recv ZSGSRD 31130
17-03-17 22:41:01.968 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:01.968 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:01.968 -07 000000502 INF: FPGA: Recv ZSGSRD 31128
17-03-17 22:41:01.978 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:01.978 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:01.978 -07 000000593 INF: FPGA: Recv ZSGSRD 31125
17-03-17 22:41:01.988 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:01.988 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:01.988 -07 000000459 INF: FPGA: Recv ZSGSRD 31132
17-03-17 22:41:01.998 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:01.998 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:01.998 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:41:01.998 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 65. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1042, R2=1070, Total=2112. Warn if over 250 bubbles per interval.
17-03-17 22:41:01.998 -07 000000438 INF: FPGA: Recv ZSGSRD 31134
17-03-17 22:41:02.008 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:02.008 -07 000000415 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:41:02.008 -07 000000462 INF: FPGA: Recv ZPIEZORD 26757
17-03-17 22:41:02.018 -07 000000415 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:02.018 -07 000000415 INF: Z Motor: Piezo is near 37.2 V (nominally 0 to 100 V), expect near 46.8 V, since DAC is at 4.677 V. Piezo Error = -9.6 V.
17-03-17 22:41:02.018 -07 000000415 INF: Z Motor: ReadAdcAverage: Commanded Z = -140.3 um, Read 10 ADC samples: Avg = 31130 (-139.5 uncal um), Error = 0.8 uncal um, Median = 31130 (-139.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 31125 (-139.5 uncal um), Max = 31134 (-139.5 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 22:41:02.018 -07 000000415 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31130, posNoise = 4, negNoise = 5
17-03-17 22:41:02.018 -07 000000415 INF: Z Motor: After move to -0.140298, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:41:02.018 -07 000000415 INF: Z Motor: Settle wait time = 4553 ms, measure time = 105 ms (allowed 150 ms), total time = 4658 ms
17-03-17 22:41:02.018 -07 000000415 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 22:41:02.068 -07 000000415 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4711 ms
17-03-17 22:41:02.068 -07 000000415 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:41:02.068 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:41:02.068 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:41:02.068 -07 000000415 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:41:02.068 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:41:02.068 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:41:02.068 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:41:02.068 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:41:02.068 -07 000000438 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-17 22:41:02.098 -07 000000438 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 23 ms.
17-03-17 22:41:02.098 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:41:02.098 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-17 22:41:02.098 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:41:02.108 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 22:41:02.108 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 42 ms.
17-03-17 22:41:02.118 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:41:02.158 -07 000000415 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:41:02.358 -07 000000438 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:41:02.358 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:41:02.358 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:41:02.358 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 22:41:02.398 -07 000000438 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:41:02.398 -07 000000459 INF: FPGA: Recv CAMSNAP
17-03-17 22:41:02.398 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 284 ms overall
17-03-17 22:41:02.478 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 22:41:02.478 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:41:02.478 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:41:02.478 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-17 22:41:02.498 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:41:02.498 -07 000000415 INF: Image SNR check: start
17-03-17 22:41:02.498 -07 000000459 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:41:02.508 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 22:41:02.508 -07 000000462 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:41:02.508 -07 000000415 INF: Image SNR check: pass  [peak (Max-Min)=53.38]
17-03-17 22:41:02.508 -07 000000415 INF: Autofocus start
17-03-17 22:41:02.508 -07 000000415 INF: MeasureProfile start
17-03-17 22:41:02.518 -07 000000415 INF: MeasureProfile done
17-03-17 22:41:02.528 -07 000000415 INF: X=16  Z correction [um]=0.0530179
17-03-17 22:41:02.528 -07 000000415 INF: Autofocus finished
17-03-17 22:41:02.708 -07 000000415 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:41:02.708 -07 000000462 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:41:02.708 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.91064453125, Z-position -0.140309075984154. ----------
17-03-17 22:41:02.708 -07 000000610 INF: Cycle	66	Tile	1	Exposure Settings		A	457	G	220	T	220	C	457
17-03-17 22:41:02.718 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 29172, sync = True, waitForSettling = True)
17-03-17 22:41:02.718 -07 000000610 INF: Z Motor: Moving to -0.133541 mm, started at -0.140309 mm, distance = 6.77 um
17-03-17 22:41:02.718 -07 000000610 INF: FPGA: Xmit ZDACW 29172\n [Z Motor]
17-03-17 22:41:02.718 -07 000000459 INF: FPGA: Recv ZDACW
17-03-17 22:41:02.728 -07 000000610 INF: FPGA: 'ZDACW 29172' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:41:02.728 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:41:02.728 -07 000000462 INF: FPGA: Recv ZDACR 29172
17-03-17 22:41:02.738 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:02.738 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:41:02.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:02.888 -07 000000438 INF: FPGA: Recv ZSGSRD 30081
17-03-17 22:41:02.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:02.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:02.898 -07 000000459 INF: FPGA: Recv ZSGSRD 30076
17-03-17 22:41:02.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:02.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:02.908 -07 000000459 INF: FPGA: Recv ZSGSRD 30071
17-03-17 22:41:02.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:02.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:02.918 -07 000000415 INF: FPGA: Recv ZSGSRD 30076
17-03-17 22:41:02.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:02.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:02.928 -07 000000438 INF: FPGA: Recv ZSGSRD 30082
17-03-17 22:41:02.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:02.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:02.938 -07 000000415 INF: FPGA: Recv ZSGSRD 30076
17-03-17 22:41:02.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:02.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:02.948 -07 000000415 INF: FPGA: Recv ZSGSRD 30077
17-03-17 22:41:02.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:02.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:02.958 -07 000000438 INF: FPGA: Recv ZSGSRD 30076
17-03-17 22:41:02.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:02.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:02.968 -07 000000415 INF: FPGA: Recv ZSGSRD 30077
17-03-17 22:41:02.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:02.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:02.978 -07 000000415 INF: FPGA: Recv ZSGSRD 30069
17-03-17 22:41:02.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:02.988 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:41:02.988 -07 000000459 INF: FPGA: Recv ZPIEZORD 25625
17-03-17 22:41:02.998 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:02.998 -07 000000610 INF: Z Motor: Piezo is near 34.7 V (nominally 0 to 100 V), expect near 44.5 V, since DAC is at 4.451 V. Piezo Error = -9.8 V.
17-03-17 22:41:02.998 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.5 um, Read 10 ADC samples: Avg = 30076 (-132.8 uncal um), Error = 0.8 uncal um, Median = 30076 (-132.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30069 (-132.7 uncal um), Max = 30082 (-132.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 22:41:02.998 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30076, posNoise = 6, negNoise = 7
17-03-17 22:41:02.998 -07 000000610 INF: Z Motor: After move to -0.133541, error = 0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:41:02.998 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 22:41:02.998 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:41:02.998 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:41:02.998 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:41:02.998 -07 000000415 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:41:02.998 -07 000000459 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:41:02.998 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:41:02.998 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:41:02.998 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:41:03.008 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:41:03.008 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:41:03.008 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:41:03.008 -07 000000438 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-17 22:41:03.008 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 22:41:03.008 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:41:03.018 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 22:41:03.018 -07 000000459 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 22:41:03.028 -07 000000438 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 20 ms.
17-03-17 22:41:03.028 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:41:03.028 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 22:41:03.028 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:41:03.038 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 22:41:03.038 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 32 ms.
17-03-17 22:41:03.038 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 457 457 220 220 29348 150\n [Camera]
17-03-17 22:41:03.238 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:41:03.698 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 649
17-03-17 22:41:03.698 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 649
17-03-17 22:41:03.698 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:41:03.698 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 649
17-03-17 22:41:03.698 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 649
17-03-17 22:41:03.698 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:41:03.708 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:41:03.708 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-17 22:41:03.708 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:41:03.708 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 1439795928, 0x0, 418435064) start.
17-03-17 22:41:03.888 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29348 842
17-03-17 22:41:04.038 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning grn on 992
17-03-17 22:41:04.078 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 373 ms.
17-03-17 22:41:04.078 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-17 22:41:04.078 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:41:04.078 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 1439795928, 0x0, 418435064) end. Duration was 366 ms.
17-03-17 22:41:04.078 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 367 ms.
17-03-17 22:41:04.078 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:41:04.078 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:41:04.078 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 22:41:04.078 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:41:04.088 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 22:41:04.258 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1212
17-03-17 22:41:04.258 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1212
17-03-17 22:41:04.258 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:41:04.258 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1212
17-03-17 22:41:04.258 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1212
17-03-17 22:41:04.258 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:41:04.258 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 656674232, 0x0, 391868352) start.
17-03-17 22:41:04.258 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:41:04.378 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:41:04.378 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-17 22:41:04.448 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP 1405
17-03-17 22:41:04.448 -07 000000478 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:41:04.448 -07 000000610 INF: FPGA: 'CAMDBLSNAP 457 457 220 220 29348 150' command took 2 ms to send, 1407 ms to get response, and 1412 ms overall
17-03-17 22:41:04.448 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 22:41:04.448 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.91064453125, Z-Position -0.133537956386738. ------
17-03-17 22:41:04.458 -07 000000458 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:41:04.458 -07 000000415 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.13973 mm
17-03-17 22:41:04.458 -07 000000415 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:41:04.458 -07 000000623 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-17 22:41:04.458 -07 000000623 INF: Y Motor: Moving to 60.7426 mm, started at 59.9106 mm, delta = 0.8320 mm
17-03-17 22:41:04.458 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:41:04.458 -07 000000478 INF: Z Motor: Entering MoveAbsStepped (DAC = 30524, sync = True, waitForSettling = False)
17-03-17 22:41:04.458 -07 000000478 INF: Z Motor: Moving to -0.139730 mm, started at -0.133538 mm, distance = -6.19 um
17-03-17 22:41:04.468 -07 000000458 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:41:04.468 -07 000000458 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:41:04.478 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:41:04.478 -07 000000438 INF: FPGA: Recv YRDPOS 122697
17-03-17 22:41:04.488 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-17 22:41:04.488 -07 000000478 INF: FPGA: Xmit ZDACW 30524\n [Z Motor]
17-03-17 22:41:04.488 -07 000000623 INF: Y Motor: Encoder = 122697 = motor step 95857.0 = 59.9106 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:41:04.488 -07 000000623 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:41:04.488 -07 000000623 INF: Y Motor: Moving 1331 steps1
17-03-17 22:41:04.488 -07 000000459 INF: FPGA: Recv ZDACW
17-03-17 22:41:04.498 -07 000000478 INF: FPGA: 'ZDACW 30524' command took 0 ms to send, 0 ms to get response, and 33 ms overall
17-03-17 22:41:04.498 -07 000000478 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:41:04.498 -07 000000512 INF: FPGA: Recv ZDACR 30524
17-03-17 22:41:04.508 -07 000000623 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:41:04.508 -07 000000478 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:04.508 -07 000000478 INF: Z Motor: MoveAbsStepped took 44 ms (did NOT wait for settling yet))
17-03-17 22:41:04.658 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 656674232, 0x0, 391868352) end. Duration was 395 ms.
17-03-17 22:41:04.658 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 22:41:04.658 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:41:04.658 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:41:04.658 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 22:41:04.668 -07 000000502 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:41:04.668 -07 000000458 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:41:04.768 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 388 ms.
17-03-17 22:41:04.768 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 22:41:04.768 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:41:04.768 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 22:41:04.778 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 513 ms.
17-03-17 22:41:04.878 -07 000000438 INF: FPGA: Recv YMVTILE
17-03-17 22:41:04.878 -07 000000623 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 22:41:04.908 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:41:04.918 -07 000000512 INF: FPGA: Recv YRDPOS 124380
17-03-17 22:41:04.928 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:41:04.928 -07 000000623 INF: Y Motor: Encoder = 124380 = motor step 97171.9 = 60.7324 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:41:04.928 -07 000000623 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-17 22:41:04.928 -07 000000623 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.832 mm, average velocity = 2.096 mm/sec
17-03-17 22:41:05.408 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 66, FrontChillerTemperature: 4.041198,
17-03-17 22:41:05.878 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:41:05.878 -07 000000478 INF: FPGA: Recv YRDPOS 124381
17-03-17 22:41:05.888 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:05.888 -07 000000623 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:41:05.908 -07 000000623 INF: Y Motor: After move to 60.742607, error = -0.009697, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:41:05.908 -07 000000623 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 22:41:05.908 -07 000000623 INF: Y Motor: Moved to 60.7329 after 1451 ms (table move)
17-03-17 22:41:05.918 -07 000000415 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139730 mm (DAC = 30524)
17-03-17 22:41:05.918 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:05.918 -07 000000623 INF: FPGA: Recv ZSGSRD 31051
17-03-17 22:41:05.928 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:05.928 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:06.728 -07 000000512 INF: FPGA: Recv ZSGSRD 31040
17-03-17 22:41:06.728 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 790 ms to get response, and 800 ms overall
17-03-17 22:41:06.728 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:06.728 -07 000000502 INF: FPGA: Recv ZSGSRD 31051
17-03-17 22:41:06.738 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:06.738 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:06.738 -07 000000512 INF: FPGA: Recv ZSGSRD 31037
17-03-17 22:41:06.748 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:06.748 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:06.748 -07 000000478 INF: FPGA: Recv ZSGSRD 31039
17-03-17 22:41:06.758 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:06.758 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:06.758 -07 000000512 INF: FPGA: Recv ZSGSRD 31039
17-03-17 22:41:06.768 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:06.768 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:06.768 -07 000000623 INF: FPGA: Recv ZSGSRD 31042
17-03-17 22:41:06.778 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:06.778 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:06.778 -07 000000512 INF: FPGA: Recv ZSGSRD 31031
17-03-17 22:41:06.788 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:06.788 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:06.788 -07 000000501 INF: FPGA: Recv ZSGSRD 31039
17-03-17 22:41:06.798 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:06.798 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:06.798 -07 000000486 INF: FPGA: Recv ZSGSRD 31042
17-03-17 22:41:06.808 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:06.808 -07 000000415 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:41:06.808 -07 000000478 INF: FPGA: Recv ZPIEZORD 26924
17-03-17 22:41:06.818 -07 000000415 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:06.818 -07 000000415 INF: Z Motor: Piezo is near 37.5 V (nominally 0 to 100 V), expect near 46.6 V, since DAC is at 4.658 V. Piezo Error = -9.1 V.
17-03-17 22:41:06.818 -07 000000415 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.7 um, Read 10 ADC samples: Avg = 31041 (-138.9 uncal um), Error = 0.8 uncal um, Median = 31040 (-138.9 uncal um), StdDev = 6 (0.0 uncal um), Range = 20 (0.1 uncal um), Min = 31031 (-138.9 uncal um), Max = 31051 (-139.0 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-17 22:41:06.818 -07 000000415 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31041, posNoise = 10, negNoise = 10
17-03-17 22:41:06.818 -07 000000415 INF: Z Motor: After move to -0.139730, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:41:06.818 -07 000000415 INF: Z Motor: Settle wait time = 1453 ms, measure time = 901 ms (allowed 150 ms), total time = 2354 ms
17-03-17 22:41:06.818 -07 000000415 INF: Z Motor: Warning: Actual position measuring time = 901 ms, longer than max expected time of 150 ms
17-03-17 22:41:06.818 -07 000000415 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2357 ms
17-03-17 22:41:06.818 -07 000000415 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:41:06.818 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:41:06.818 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:41:06.818 -07 000000623 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:41:06.818 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:41:06.818 -07 000000593 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:41:06.818 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:41:06.828 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:41:06.828 -07 000000593 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:41:06.828 -07 000000593 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:41:06.828 -07 000000593 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:41:06.838 -07 000000593 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 22:41:06.838 -07 000000593 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 22:41:06.838 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:41:06.888 -07 000000502 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:41:06.998 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:41:06.998 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 65. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1042, R2=1070, Total=2112. Warn if over 250 bubbles per interval.
17-03-17 22:41:07.088 -07 000000501 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:41:07.088 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:41:07.088 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:41:07.088 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610341080, 0x0, 559484976) start.
17-03-17 22:41:07.128 -07 000000512 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:41:07.128 -07 000000502 INF: FPGA: Recv CAMSNAP
17-03-17 22:41:07.128 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 285 ms overall
17-03-17 22:41:07.218 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610341080, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 22:41:07.218 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:41:07.218 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:41:07.218 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 22:41:07.228 -07 000000415 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:41:07.228 -07 000000501 INF: Autofocus start
17-03-17 22:41:07.228 -07 000000501 INF: MeasureProfile start
17-03-17 22:41:07.228 -07 000000593 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:41:07.238 -07 000000415 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:41:07.238 -07 000000415 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:41:07.238 -07 000000501 INF: MeasureProfile done
17-03-17 22:41:07.238 -07 000000501 INF: X=16  Z correction [um]=0.0530179
17-03-17 22:41:07.238 -07 000000501 INF: Autofocus finished
17-03-17 22:41:07.438 -07 000000502 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:41:07.438 -07 000000415 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:41:07.438 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.73291015625, Z-position -0.139737321103537. ----------
17-03-17 22:41:07.438 -07 000000610 INF: Cycle	66	Tile	2	Exposure Settings		A	457	G	220	T	220	C	457
17-03-17 22:41:07.448 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 29048, sync = True, waitForSettling = True)
17-03-17 22:41:07.448 -07 000000610 INF: Z Motor: Moving to -0.132973 mm, started at -0.139737 mm, distance = 6.76 um
17-03-17 22:41:07.448 -07 000000610 INF: FPGA: Xmit ZDACW 29048\n [Z Motor]
17-03-17 22:41:07.448 -07 000000502 INF: FPGA: Recv ZDACW
17-03-17 22:41:07.458 -07 000000610 INF: FPGA: 'ZDACW 29048' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:07.458 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:41:07.458 -07 000000478 INF: FPGA: Recv ZDACR 29048
17-03-17 22:41:07.468 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:07.468 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:41:07.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:07.618 -07 000000501 INF: FPGA: Recv ZSGSRD 29991
17-03-17 22:41:07.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:41:07.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:07.628 -07 000000623 INF: FPGA: Recv ZSGSRD 29989
17-03-17 22:41:07.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:07.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:07.638 -07 000000478 INF: FPGA: Recv ZSGSRD 29989
17-03-17 22:41:07.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:07.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:07.648 -07 000000501 INF: FPGA: Recv ZSGSRD 29991
17-03-17 22:41:07.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:07.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:07.658 -07 000000478 INF: FPGA: Recv ZSGSRD 29988
17-03-17 22:41:07.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:07.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:07.668 -07 000000623 INF: FPGA: Recv ZSGSRD 29986
17-03-17 22:41:07.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:07.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:07.678 -07 000000415 INF: FPGA: Recv ZSGSRD 29988
17-03-17 22:41:07.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:41:07.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:07.688 -07 000000501 INF: FPGA: Recv ZSGSRD 29992
17-03-17 22:41:07.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:07.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:07.698 -07 000000415 INF: FPGA: Recv ZSGSRD 29990
17-03-17 22:41:07.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:07.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:07.708 -07 000000623 INF: FPGA: Recv ZSGSRD 29987
17-03-17 22:41:07.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:07.718 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:41:07.718 -07 000000478 INF: FPGA: Recv ZPIEZORD 25569
17-03-17 22:41:07.728 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:07.728 -07 000000610 INF: Z Motor: Piezo is near 34.6 V (nominally 0 to 100 V), expect near 44.3 V, since DAC is at 4.432 V. Piezo Error = -9.7 V.
17-03-17 22:41:07.728 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.0 um, Read 10 ADC samples: Avg = 29989 (-132.2 uncal um), Error = 0.8 uncal um, Median = 29989 (-132.2 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 29986 (-132.2 uncal um), Max = 29992 (-132.2 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 22:41:07.728 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29989, posNoise = 3, negNoise = 3
17-03-17 22:41:07.728 -07 000000610 INF: Z Motor: After move to -0.132973, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:41:07.728 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 22:41:07.728 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:41:07.728 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:41:07.728 -07 000000486 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:41:07.728 -07 000000458 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:41:07.728 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:41:07.728 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:41:07.728 -07 000000593 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:41:07.728 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:41:07.728 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:41:07.728 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:41:07.728 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:41:07.728 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:41:07.728 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:41:07.738 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:41:07.738 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:41:07.738 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:41:07.748 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 22:41:07.748 -07 000000593 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 22:41:07.748 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 22:41:07.748 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 22:41:07.748 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 457 457 220 220 29225 150\n [Camera]
17-03-17 22:41:07.948 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:41:08.408 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 649
17-03-17 22:41:08.408 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 649
17-03-17 22:41:08.408 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:41:08.408 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 649
17-03-17 22:41:08.418 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 649
17-03-17 22:41:08.418 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:41:08.418 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:41:08.418 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-17 22:41:08.418 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:41:08.418 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1439795928, 0x0, 391868352) start.
17-03-17 22:41:08.598 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29225 842
17-03-17 22:41:08.748 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP turning grn on 992
17-03-17 22:41:08.808 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1439795928, 0x0, 391868352) end. Duration was 397 ms.
17-03-17 22:41:08.808 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 22:41:08.808 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:41:08.818 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:41:08.818 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 22:41:08.818 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 401 ms.
17-03-17 22:41:08.818 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 22:41:08.818 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:41:08.818 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:41:08.828 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-17 22:41:08.968 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1212
17-03-17 22:41:08.978 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1212
17-03-17 22:41:08.978 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:41:08.978 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:41:08.978 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start.
17-03-17 22:41:08.978 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1212
17-03-17 22:41:08.978 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1212
17-03-17 22:41:08.978 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:41:08.978 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:41:08.978 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) start.
17-03-17 22:41:09.168 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP 1404
17-03-17 22:41:09.168 -07 000000458 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:41:09.168 -07 000000610 INF: FPGA: 'CAMDBLSNAP 457 457 220 220 29225 150' command took 2 ms to send, 1401 ms to get response, and 1411 ms overall
17-03-17 22:41:09.168 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 22:41:09.168 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.73291015625, Z-Position -0.132979049930404. ------
17-03-17 22:41:09.168 -07 000000478 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:41:09.168 -07 000000623 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.13963 mm
17-03-17 22:41:09.168 -07 000000623 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:41:09.178 -07 000000512 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-17 22:41:09.178 -07 000000512 INF: Y Motor: Moving to 61.5726 mm, started at 60.7329 mm, delta = 0.8397 mm
17-03-17 22:41:09.178 -07 000000458 INF: Z Motor: Entering MoveAbsStepped (DAC = 30502, sync = True, waitForSettling = False)
17-03-17 22:41:09.178 -07 000000458 INF: Z Motor: Moving to -0.139629 mm, started at -0.132979 mm, distance = -6.65 um
17-03-17 22:41:09.178 -07 000000486 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:41:09.178 -07 000000478 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 22:41:09.178 -07 000000458 INF: FPGA: Xmit ZDACW 30502\n [Z Motor]
17-03-17 22:41:09.178 -07 000000486 INF: FPGA: Recv ZDACW
17-03-17 22:41:09.188 -07 000000458 INF: FPGA: 'ZDACW 30502' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:41:09.188 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:41:09.188 -07 000000415 INF: FPGA: Recv YRDPOS 124381
17-03-17 22:41:09.198 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-17 22:41:09.198 -07 000000478 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:41:09.198 -07 000000512 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:41:09.198 -07 000000512 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:41:09.198 -07 000000512 INF: Y Motor: Moving 1344 steps-21
17-03-17 22:41:09.208 -07 000000458 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:41:09.208 -07 000000415 INF: FPGA: Recv ZDACR 30502
17-03-17 22:41:09.218 -07 000000512 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:41:09.218 -07 000000458 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:41:09.218 -07 000000458 INF: Z Motor: MoveAbsStepped took 37 ms (did NOT wait for settling yet))
17-03-17 22:41:09.378 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) end. Duration was 399 ms.
17-03-17 22:41:09.378 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 401 ms.
17-03-17 22:41:09.378 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 22:41:09.378 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:41:09.378 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 22:41:09.378 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:41:09.388 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 22:41:09.388 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:41:09.388 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-17 22:41:09.388 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-17 22:41:09.398 -07 000000458 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:41:09.398 -07 000000478 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 219 ms overall
17-03-17 22:41:09.598 -07 000000462 INF: FPGA: Recv YMVTILE
17-03-17 22:41:09.598 -07 000000512 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 400 ms overall
17-03-17 22:41:09.638 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:41:09.638 -07 000000478 INF: FPGA: Recv YRDPOS 126082
17-03-17 22:41:09.648 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:09.648 -07 000000512 INF: Y Motor: Encoder = 126082 = motor step 98501.6 = 61.5635 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:41:09.648 -07 000000512 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-17 22:41:09.648 -07 000000512 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 400 ms, distance = 0.840 mm, average velocity = 2.099 mm/sec
17-03-17 22:41:10.598 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:41:10.598 -07 000000486 INF: FPGA: Recv YRDPOS 126082
17-03-17 22:41:10.608 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:41:10.608 -07 000000512 INF: Y Motor: Encoder = 126082 = motor step 98501.6 = 61.5635 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:41:10.628 -07 000000512 INF: Y Motor: After move to 61.572609, error = -0.009132, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:41:10.628 -07 000000512 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:41:10.628 -07 000000512 INF: Y Motor: Moved to 61.5635 after 1455 ms (table move)
17-03-17 22:41:10.638 -07 000000623 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139629 mm (DAC = 30502)
17-03-17 22:41:10.638 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:10.638 -07 000000593 INF: FPGA: Recv ZSGSRD 31026
17-03-17 22:41:10.648 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:10.648 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:10.648 -07 000000512 INF: FPGA: Recv ZSGSRD 31035
17-03-17 22:41:10.658 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:10.658 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:10.658 -07 000000501 INF: FPGA: Recv ZSGSRD 31032
17-03-17 22:41:10.668 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:10.668 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:10.668 -07 000000502 INF: FPGA: Recv ZSGSRD 31031
17-03-17 22:41:10.678 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:10.678 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:10.678 -07 000000501 INF: FPGA: Recv ZSGSRD 31030
17-03-17 22:41:10.688 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:10.688 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:10.688 -07 000000512 INF: FPGA: Recv ZSGSRD 31021
17-03-17 22:41:10.698 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:10.698 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:10.698 -07 000000458 INF: FPGA: Recv ZSGSRD 31018
17-03-17 22:41:10.708 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:10.708 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:10.708 -07 000000458 INF: FPGA: Recv ZSGSRD 31020
17-03-17 22:41:10.718 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:41:10.718 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:10.718 -07 000000458 INF: FPGA: Recv ZSGSRD 31024
17-03-17 22:41:10.728 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:10.728 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:10.728 -07 000000458 INF: FPGA: Recv ZSGSRD 31035
17-03-17 22:41:10.738 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:10.738 -07 000000623 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:41:10.738 -07 000000458 INF: FPGA: Recv ZPIEZORD 27004
17-03-17 22:41:10.748 -07 000000623 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:10.748 -07 000000623 INF: Z Motor: Piezo is near 37.7 V (nominally 0 to 100 V), expect near 46.5 V, since DAC is at 4.654 V. Piezo Error = -8.9 V.
17-03-17 22:41:10.748 -07 000000623 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.6 um, Read 10 ADC samples: Avg = 31027 (-138.8 uncal um), Error = 0.8 uncal um, Median = 31028 (-138.9 uncal um), StdDev = 6 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 31018 (-138.8 uncal um), Max = 31035 (-138.9 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 22:41:10.748 -07 000000623 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31027, posNoise = 8, negNoise = 9
17-03-17 22:41:10.748 -07 000000623 INF: Z Motor: After move to -0.139629, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:41:10.748 -07 000000623 INF: Z Motor: Settle wait time = 1458 ms, measure time = 110 ms (allowed 150 ms), total time = 1568 ms
17-03-17 22:41:10.748 -07 000000623 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-17 22:41:10.768 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 66, FrontChillerTemperature: 4.019446,
17-03-17 22:41:10.788 -07 000000623 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1610 ms
17-03-17 22:41:10.788 -07 000000623 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:41:10.788 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:41:10.788 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:41:10.788 -07 000000458 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:41:10.788 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:41:10.788 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:41:10.788 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:41:10.788 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 22:41:10.788 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:41:10.788 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:41:10.788 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:41:10.798 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 22:41:10.798 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 22:41:10.808 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:41:10.848 -07 000000512 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:41:11.048 -07 000000608 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:41:11.048 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:41:11.048 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:41:11.048 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1492093256, 0x0, 559484976) start.
17-03-17 22:41:11.088 -07 000000623 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:41:11.088 -07 000000608 INF: FPGA: Recv CAMSNAP
17-03-17 22:41:11.088 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 285 ms overall
17-03-17 22:41:11.168 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1492093256, 0x0, 559484976) end. Duration was 117 ms.
17-03-17 22:41:11.168 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:41:11.168 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 22:41:11.168 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-17 22:41:11.188 -07 000000593 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:41:11.188 -07 000000486 INF: Autofocus start
17-03-17 22:41:11.188 -07 000000486 INF: MeasureProfile start
17-03-17 22:41:11.188 -07 000000415 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:41:11.198 -07 000000593 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:41:11.198 -07 000000593 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:41:11.208 -07 000000486 INF: MeasureProfile done
17-03-17 22:41:11.208 -07 000000486 INF: X=-16  Z correction [um]=-0.08128808
17-03-17 22:41:11.208 -07 000000486 INF: Autofocus finished
17-03-17 22:41:11.398 -07 000000512 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:41:11.398 -07 000000593 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:41:11.398 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.5634765625, Z-position -0.139647382133552. ----------
17-03-17 22:41:11.408 -07 000000610 INF: Cycle	66	Tile	3	Exposure Settings		A	457	G	220	T	220	C	457
17-03-17 22:41:11.408 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28997, sync = True, waitForSettling = True)
17-03-17 22:41:11.408 -07 000000610 INF: Z Motor: Moving to -0.132740 mm, started at -0.139647 mm, distance = 6.91 um
17-03-17 22:41:11.408 -07 000000610 INF: FPGA: Xmit ZDACW 28997\n [Z Motor]
17-03-17 22:41:11.408 -07 000000502 INF: FPGA: Recv ZDACW
17-03-17 22:41:11.418 -07 000000610 INF: FPGA: 'ZDACW 28997' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:41:11.418 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:41:11.418 -07 000000593 INF: FPGA: Recv ZDACR 28997
17-03-17 22:41:11.428 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:11.428 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:41:11.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:11.578 -07 000000415 INF: FPGA: Recv ZSGSRD 29955
17-03-17 22:41:11.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:41:11.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:11.588 -07 000000478 INF: FPGA: Recv ZSGSRD 29958
17-03-17 22:41:11.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:11.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:11.598 -07 000000608 INF: FPGA: Recv ZSGSRD 29946
17-03-17 22:41:11.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:11.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:11.608 -07 000000478 INF: FPGA: Recv ZSGSRD 29950
17-03-17 22:41:11.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:11.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:11.618 -07 000000608 INF: FPGA: Recv ZSGSRD 29954
17-03-17 22:41:11.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:11.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:11.628 -07 000000593 INF: FPGA: Recv ZSGSRD 29953
17-03-17 22:41:11.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:11.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:11.638 -07 000000608 INF: FPGA: Recv ZSGSRD 29953
17-03-17 22:41:11.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:11.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:11.648 -07 000000486 INF: FPGA: Recv ZSGSRD 29953
17-03-17 22:41:11.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:11.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:11.658 -07 000000608 INF: FPGA: Recv ZSGSRD 29958
17-03-17 22:41:11.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:11.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:11.668 -07 000000438 INF: FPGA: Recv ZSGSRD 29956
17-03-17 22:41:11.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:11.678 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:41:11.678 -07 000000458 INF: FPGA: Recv ZPIEZORD 25590
17-03-17 22:41:11.688 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:11.688 -07 000000610 INF: Z Motor: Piezo is near 34.7 V (nominally 0 to 100 V), expect near 44.2 V, since DAC is at 4.425 V. Piezo Error = -9.6 V.
17-03-17 22:41:11.688 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.7 um, Read 10 ADC samples: Avg = 29954 (-132.0 uncal um), Error = 0.8 uncal um, Median = 29954 (-132.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29946 (-131.9 uncal um), Max = 29958 (-132.0 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 22:41:11.688 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29954, posNoise = 4, negNoise = 8
17-03-17 22:41:11.688 -07 000000610 INF: Z Motor: After move to -0.132740, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:41:11.688 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 22:41:11.688 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:41:11.688 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:41:11.688 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:41:11.688 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:41:11.688 -07 000000593 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:41:11.688 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:41:11.688 -07 000000458 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:41:11.688 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:41:11.688 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:41:11.688 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:41:11.688 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:41:11.688 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:41:11.698 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:41:11.698 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:41:11.698 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:41:11.698 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:41:11.698 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 22:41:11.698 -07 000000458 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 22:41:11.708 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 22:41:11.708 -07 000000593 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 22:41:11.708 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 457 457 220 220 29174 150\n [Camera]
17-03-17 22:41:11.908 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:41:11.998 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:41:11.998 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 65. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1042, R2=1070, Total=2112. Warn if over 250 bubbles per interval.
17-03-17 22:41:12.358 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 649
17-03-17 22:41:12.358 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 649
17-03-17 22:41:12.368 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:41:12.368 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:41:12.368 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 22:41:12.368 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 649
17-03-17 22:41:12.368 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 649
17-03-17 22:41:12.368 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:41:12.368 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:41:12.368 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 22:41:12.558 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29174 842
17-03-17 22:41:12.708 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning grn on 992
17-03-17 22:41:12.758 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 398 ms.
17-03-17 22:41:12.758 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 22:41:12.758 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:41:12.768 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:41:12.768 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 22:41:12.768 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 401 ms.
17-03-17 22:41:12.768 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 22:41:12.768 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:41:12.768 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:41:12.778 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-17 22:41:12.928 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1212
17-03-17 22:41:12.928 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1212
17-03-17 22:41:12.928 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:41:12.928 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:41:12.928 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-17 22:41:12.928 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1212
17-03-17 22:41:12.928 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1212
17-03-17 22:41:12.928 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:41:12.928 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:41:12.928 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 22:41:13.118 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP 1405
17-03-17 22:41:13.118 -07 000000438 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:41:13.118 -07 000000610 INF: FPGA: 'CAMDBLSNAP 457 457 220 220 29174 150' command took 2 ms to send, 1404 ms to get response, and 1411 ms overall
17-03-17 22:41:13.118 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 22:41:13.118 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.5634765625, Z-Position -0.132754202505443. ------
17-03-17 22:41:13.118 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:41:13.118 -07 000000512 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.13914 mm
17-03-17 22:41:13.118 -07 000000512 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:41:13.128 -07 000000438 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-17 22:41:13.128 -07 000000438 INF: Y Motor: Moving to 62.4026 mm, started at 61.5635 mm, delta = 0.8391 mm
17-03-17 22:41:13.128 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:41:13.328 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 403 ms.
17-03-17 22:41:13.328 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 22:41:13.328 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:41:13.338 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 402 ms.
17-03-17 22:41:13.338 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-17 22:41:13.338 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:41:13.338 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:41:13.338 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 22:41:13.338 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-17 22:41:13.348 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-17 22:41:13.348 -07 000000593 INF: Z Motor: Entering MoveAbsStepped (DAC = 30394, sync = True, waitForSettling = False)
17-03-17 22:41:13.348 -07 000000593 INF: Z Motor: Moving to -0.139135 mm, started at -0.132754 mm, distance = -6.38 um
17-03-17 22:41:13.348 -07 000000593 INF: FPGA: Xmit ZDACW 30394\n [Z Motor]
17-03-17 22:41:13.358 -07 000000478 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:41:13.358 -07 000000478 INF: FPGA: Recv YRDPOS 126082
17-03-17 22:41:13.358 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 230 ms to get response, and 231 ms overall
17-03-17 22:41:13.358 -07 000000478 INF: FPGA: Recv ZDACW
17-03-17 22:41:13.358 -07 000000593 INF: FPGA: 'ZDACW 30394' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 22:41:13.358 -07 000000593 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:41:13.358 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 220 ms to get response, and 228 ms overall
17-03-17 22:41:13.358 -07 000000438 INF: Y Motor: Encoder = 126082 = motor step 98501.6 = 61.5635 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:41:13.358 -07 000000438 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:41:13.358 -07 000000438 INF: Y Motor: Moving 1343 steps-19
17-03-17 22:41:13.358 -07 000000478 INF: FPGA: Recv ZDACR 30394
17-03-17 22:41:13.368 -07 000000593 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:41:13.368 -07 000000593 INF: Z Motor: MoveAbsStepped took 13 ms (did NOT wait for settling yet))
17-03-17 22:41:13.368 -07 000000608 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:41:13.378 -07 000000438 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:41:13.568 -07 000000478 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:41:13.568 -07 000000608 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 211 ms overall
17-03-17 22:41:13.748 -07 000000593 INF: FPGA: Recv YMVTILE
17-03-17 22:41:13.748 -07 000000438 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-17 22:41:13.788 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:41:13.798 -07 000000608 INF: FPGA: Recv YRDPOS 127785
17-03-17 22:41:13.798 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 4 ms overall
17-03-17 22:41:13.798 -07 000000438 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:41:13.798 -07 000000438 INF: Y Motor: Position error before settling (table move) = -16 encoder counts (-0.008 mm)
17-03-17 22:41:13.798 -07 000000438 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 396 ms, distance = 0.839 mm, average velocity = 2.119 mm/sec
17-03-17 22:41:14.748 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:41:14.748 -07 000000478 INF: FPGA: Recv YRDPOS 127785
17-03-17 22:41:14.758 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:41:14.758 -07 000000438 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:41:14.778 -07 000000438 INF: Y Motor: After move to 62.402607, error = -0.007587, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:41:14.778 -07 000000438 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:41:14.778 -07 000000438 INF: Y Motor: Moved to 62.3950 after 1653 ms (table move)
17-03-17 22:41:14.778 -07 000000512 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139135 mm (DAC = 30394)
17-03-17 22:41:14.778 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:14.788 -07 000000438 INF: FPGA: Recv ZSGSRD 30958
17-03-17 22:41:14.788 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 22:41:14.788 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:14.788 -07 000000593 INF: FPGA: Recv ZSGSRD 30942
17-03-17 22:41:14.798 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:41:14.798 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:14.798 -07 000000608 INF: FPGA: Recv ZSGSRD 30950
17-03-17 22:41:14.808 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:14.808 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:14.808 -07 000000593 INF: FPGA: Recv ZSGSRD 30957
17-03-17 22:41:14.818 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:14.818 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:14.818 -07 000000478 INF: FPGA: Recv ZSGSRD 30951
17-03-17 22:41:14.828 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:14.828 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:14.828 -07 000000576 INF: FPGA: Recv ZSGSRD 30947
17-03-17 22:41:14.838 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:14.838 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:14.838 -07 000000438 INF: FPGA: Recv ZSGSRD 30946
17-03-17 22:41:14.848 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:14.848 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:14.848 -07 000000593 INF: FPGA: Recv ZSGSRD 30947
17-03-17 22:41:14.858 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:14.858 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:14.858 -07 000000593 INF: FPGA: Recv ZSGSRD 30954
17-03-17 22:41:14.868 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:14.868 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:14.868 -07 000000576 INF: FPGA: Recv ZSGSRD 30951
17-03-17 22:41:14.878 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:14.878 -07 000000512 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:41:14.878 -07 000000478 INF: FPGA: Recv ZPIEZORD 26924
17-03-17 22:41:14.888 -07 000000512 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:14.888 -07 000000512 INF: Z Motor: Piezo is near 37.5 V (nominally 0 to 100 V), expect near 46.4 V, since DAC is at 4.638 V. Piezo Error = -8.9 V.
17-03-17 22:41:14.888 -07 000000512 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.1 um, Read 10 ADC samples: Avg = 30950 (-138.4 uncal um), Error = 0.8 uncal um, Median = 30950 (-138.4 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 30942 (-138.3 uncal um), Max = 30958 (-138.4 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 22:41:14.888 -07 000000512 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30950, posNoise = 8, negNoise = 8
17-03-17 22:41:14.888 -07 000000512 INF: Z Motor: After move to -0.139135, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:41:14.888 -07 000000512 INF: Z Motor: Settle wait time = 1430 ms, measure time = 103 ms (allowed 150 ms), total time = 1533 ms
17-03-17 22:41:14.888 -07 000000512 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 22:41:14.938 -07 000000512 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1811 ms
17-03-17 22:41:14.938 -07 000000512 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:41:14.938 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:41:14.938 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:41:14.938 -07 000000593 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:41:14.938 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:41:14.938 -07 000000459 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:41:14.938 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:41:14.938 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 22:41:14.938 -07 000000459 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:41:14.938 -07 000000459 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:41:14.948 -07 000000459 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:41:14.958 -07 000000459 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 22:41:14.958 -07 000000459 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 22:41:14.958 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:41:15.008 -07 000000459 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:41:15.208 -07 000000438 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:41:15.208 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:41:15.208 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:41:15.208 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1511174640, 0x0, 559484976) start.
17-03-17 22:41:15.248 -07 000000593 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:41:15.248 -07 000000576 INF: FPGA: Recv CAMSNAP
17-03-17 22:41:15.248 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 285 ms overall
17-03-17 22:41:15.328 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1511174640, 0x0, 559484976) end. Duration was 125 ms.
17-03-17 22:41:15.328 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:41:15.328 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 22:41:15.328 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 127 ms.
17-03-17 22:41:15.348 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:41:15.348 -07 000000512 INF: Autofocus start
17-03-17 22:41:15.348 -07 000000512 INF: MeasureProfile start
17-03-17 22:41:15.348 -07 000000478 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:41:15.358 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:41:15.358 -07 000000608 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:41:15.358 -07 000000512 INF: MeasureProfile done
17-03-17 22:41:15.358 -07 000000512 INF: X=0  Z correction [um]=-0.02394831
17-03-17 22:41:15.358 -07 000000512 INF: Autofocus finished
17-03-17 22:41:15.558 -07 000000459 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:41:15.558 -07 000000608 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:41:15.558 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.39501953125, Z-position -0.139152717798637. ----------
17-03-17 22:41:15.558 -07 000000610 INF: Cycle	66	Tile	4	Exposure Settings		A	457	G	220	T	220	C	457
17-03-17 22:41:15.568 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28902, sync = True, waitForSettling = True)
17-03-17 22:41:15.568 -07 000000610 INF: Z Motor: Moving to -0.132305 mm, started at -0.139153 mm, distance = 6.85 um
17-03-17 22:41:15.568 -07 000000610 INF: FPGA: Xmit ZDACW 28902\n [Z Motor]
17-03-17 22:41:15.568 -07 000000459 INF: FPGA: Recv ZDACW
17-03-17 22:41:15.578 -07 000000610 INF: FPGA: 'ZDACW 28902' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:15.578 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:41:15.578 -07 000000512 INF: FPGA: Recv ZDACR 28902
17-03-17 22:41:15.588 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:15.588 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:41:15.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:15.738 -07 000000438 INF: FPGA: Recv ZSGSRD 29885
17-03-17 22:41:15.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:41:15.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:15.748 -07 000000478 INF: FPGA: Recv ZSGSRD 29884
17-03-17 22:41:15.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:15.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:15.758 -07 000000608 INF: FPGA: Recv ZSGSRD 29885
17-03-17 22:41:15.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:15.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:15.768 -07 000000623 INF: FPGA: Recv ZSGSRD 29883
17-03-17 22:41:15.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:15.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:15.778 -07 000000438 INF: FPGA: Recv ZSGSRD 29886
17-03-17 22:41:15.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:15.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:15.788 -07 000000512 INF: FPGA: Recv ZSGSRD 29886
17-03-17 22:41:15.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:15.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:15.798 -07 000000623 INF: FPGA: Recv ZSGSRD 29879
17-03-17 22:41:15.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:15.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:15.818 -07 000000576 INF: FPGA: Recv ZSGSRD 29891
17-03-17 22:41:15.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:41:15.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:15.828 -07 000000623 INF: FPGA: Recv ZSGSRD 29880
17-03-17 22:41:15.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:15.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:15.838 -07 000000576 INF: FPGA: Recv ZSGSRD 29883
17-03-17 22:41:15.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:15.848 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:41:15.848 -07 000000512 INF: FPGA: Recv ZPIEZORD 25526
17-03-17 22:41:15.858 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:15.858 -07 000000610 INF: Z Motor: Piezo is near 34.5 V (nominally 0 to 100 V), expect near 44.1 V, since DAC is at 4.410 V. Piezo Error = -9.6 V.
17-03-17 22:41:15.858 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.3 um, Read 10 ADC samples: Avg = 29884 (-131.5 uncal um), Error = 0.8 uncal um, Median = 29884 (-131.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29879 (-131.5 uncal um), Max = 29891 (-131.6 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 22:41:15.858 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29884, posNoise = 7, negNoise = 5
17-03-17 22:41:15.858 -07 000000610 INF: Z Motor: After move to -0.132305, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:41:15.858 -07 000000610 INF: Z Motor: MoveAbsStepped took 290 ms)
17-03-17 22:41:15.858 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:41:15.858 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:41:15.858 -07 000000478 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:41:15.858 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:41:15.858 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:41:15.858 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:41:15.858 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:41:15.858 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:41:15.858 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 22:41:15.858 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:41:15.858 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 22:41:15.858 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:41:15.858 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:41:15.858 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:41:15.868 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:41:15.868 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:41:15.868 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 22:41:15.868 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 22:41:15.878 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 22:41:15.878 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 22:41:15.878 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 457 457 220 220 29078 150\n [Camera]
17-03-17 22:41:16.078 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:41:16.128 -07 000000438 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 66, FrontChillerTemperature: 4.000345,
17-03-17 22:41:16.538 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 649
17-03-17 22:41:16.538 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 649
17-03-17 22:41:16.538 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:41:16.538 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:41:16.538 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start.
17-03-17 22:41:16.538 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 649
17-03-17 22:41:16.538 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 649
17-03-17 22:41:16.538 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:41:16.538 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:41:16.538 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) start.
17-03-17 22:41:16.728 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29078 842
17-03-17 22:41:16.878 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning grn on 992
17-03-17 22:41:16.908 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 22:41:16.908 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-17 22:41:16.908 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:41:16.918 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 22:41:16.918 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-17 22:41:16.918 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:41:16.918 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:41:16.918 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 22:41:16.918 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:41:16.928 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 22:41:16.998 -07 000000593 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:41:16.998 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 65. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1042, R2=1070, Total=2112. Warn if over 250 bubbles per interval.
17-03-17 22:41:17.098 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1214
17-03-17 22:41:17.098 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1214
17-03-17 22:41:17.098 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:41:17.098 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:41:17.098 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-17 22:41:17.098 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1214
17-03-17 22:41:17.098 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1214
17-03-17 22:41:17.098 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:41:17.098 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:41:17.098 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-17 22:41:17.288 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP 1404
17-03-17 22:41:17.288 -07 000000576 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:41:17.288 -07 000000610 INF: FPGA: 'CAMDBLSNAP 457 457 220 220 29078 150' command took 2 ms to send, 1405 ms to get response, and 1412 ms overall
17-03-17 22:41:17.288 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 22:41:17.288 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.39501953125, Z-Position -0.132304507655519. ------
17-03-17 22:41:17.298 -07 000000593 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.13905 mm
17-03-17 22:41:17.298 -07 000000593 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:41:17.298 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:41:17.488 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 386 ms.
17-03-17 22:41:17.488 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 22:41:17.488 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:41:17.488 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 392 ms.
17-03-17 22:41:17.488 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 22:41:17.488 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:41:17.488 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:41:17.498 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 22:41:17.498 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 22:41:17.498 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 22:41:17.508 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:41:17.638 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 207 ms to get response, and 217 ms overall
17-03-17 22:41:17.638 -07 000000576 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:41:17.638 -07 000000623 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-17 22:41:17.638 -07 000000623 INF: Y Motor: Moving to 63.2326 mm, started at 62.3950 mm, delta = 0.8376 mm
17-03-17 22:41:17.638 -07 000000608 INF: Z Motor: Entering MoveAbsStepped (DAC = 30375, sync = True, waitForSettling = False)
17-03-17 22:41:17.638 -07 000000608 INF: Z Motor: Moving to -0.139048 mm, started at -0.132305 mm, distance = -6.74 um
17-03-17 22:41:17.648 -07 000000608 INF: FPGA: Xmit ZDACW 30375\n [Z Motor]
17-03-17 22:41:17.658 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:41:18.228 -07 000000541 INF: FPGA: Recv ZDACW
17-03-17 22:41:18.228 -07 000000541 INF: FPGA: Recv YRDPOS 127785
17-03-17 22:41:18.228 -07 000000541 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:41:18.228 -07 000000576 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 580 ms to get response, and 583 ms overall
17-03-17 22:41:18.228 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 560 ms to get response, and 582 ms overall
17-03-17 22:41:18.228 -07 000000623 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:41:18.228 -07 000000623 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:41:18.228 -07 000000623 INF: Y Motor: Moving 1340 steps-16
17-03-17 22:41:18.228 -07 000000608 INF: FPGA: 'ZDACW 30375' command took 0 ms to send, 570 ms to get response, and 581 ms overall
17-03-17 22:41:18.228 -07 000000623 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:41:18.238 -07 000000608 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:41:18.238 -07 000000576 INF: FPGA: Recv ZDACR 30375
17-03-17 22:41:18.248 -07 000000608 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-17 22:41:18.248 -07 000000608 INF: Z Motor: MoveAbsStepped took 601 ms (did NOT wait for settling yet))
17-03-17 22:41:18.608 -07 000000541 INF: FPGA: Recv YMVTILE
17-03-17 22:41:18.608 -07 000000623 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 378 ms overall
17-03-17 22:41:18.638 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:41:18.648 -07 000000608 INF: FPGA: Recv YRDPOS 129482
17-03-17 22:41:18.648 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 22:41:18.648 -07 000000623 INF: Y Motor: Encoder = 129482 = motor step 101157.8 = 63.2236 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:41:18.648 -07 000000623 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-17 22:41:18.648 -07 000000623 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.838 mm, average velocity = 2.216 mm/sec
17-03-17 22:41:19.598 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:41:19.598 -07 000000608 INF: FPGA: Recv YRDPOS 129482
17-03-17 22:41:19.608 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:19.608 -07 000000623 INF: Y Motor: Encoder = 129482 = motor step 101157.8 = 63.2236 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:41:19.628 -07 000000623 INF: Y Motor: After move to 63.232609, error = -0.008976, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:41:19.628 -07 000000623 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:41:19.628 -07 000000623 INF: Y Motor: Moved to 63.2236 after 1988 ms (table move)
17-03-17 22:41:19.638 -07 000000593 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139048 mm (DAC = 30375)
17-03-17 22:41:19.638 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:19.638 -07 000000541 INF: FPGA: Recv ZSGSRD 30942
17-03-17 22:41:19.648 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:19.648 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:19.648 -07 000000608 INF: FPGA: Recv ZSGSRD 30940
17-03-17 22:41:19.658 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:19.658 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:19.658 -07 000000608 INF: FPGA: Recv ZSGSRD 30939
17-03-17 22:41:19.668 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:19.668 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:19.668 -07 000000576 INF: FPGA: Recv ZSGSRD 30927
17-03-17 22:41:19.678 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:19.678 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:19.678 -07 000000608 INF: FPGA: Recv ZSGSRD 30925
17-03-17 22:41:19.688 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:19.688 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:19.688 -07 000000576 INF: FPGA: Recv ZSGSRD 30934
17-03-17 22:41:19.698 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:41:19.698 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:19.698 -07 000000541 INF: FPGA: Recv ZSGSRD 30931
17-03-17 22:41:19.708 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:19.708 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:19.708 -07 000000623 INF: FPGA: Recv ZSGSRD 30938
17-03-17 22:41:19.718 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:19.718 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:19.718 -07 000000462 INF: FPGA: Recv ZSGSRD 30933
17-03-17 22:41:19.728 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:19.728 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:19.728 -07 000000623 INF: FPGA: Recv ZSGSRD 30938
17-03-17 22:41:19.738 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:19.738 -07 000000593 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:41:19.738 -07 000000462 INF: FPGA: Recv ZPIEZORD 26962
17-03-17 22:41:19.748 -07 000000593 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:19.748 -07 000000593 INF: Z Motor: Piezo is near 37.6 V (nominally 0 to 100 V), expect near 46.3 V, since DAC is at 4.635 V. Piezo Error = -8.8 V.
17-03-17 22:41:19.748 -07 000000593 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.0 um, Read 10 ADC samples: Avg = 30935 (-138.3 uncal um), Error = 0.8 uncal um, Median = 30936 (-138.3 uncal um), StdDev = 6 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 30925 (-138.2 uncal um), Max = 30942 (-138.3 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-17 22:41:19.748 -07 000000593 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30935, posNoise = 7, negNoise = 10
17-03-17 22:41:19.748 -07 000000593 INF: Z Motor: After move to -0.139048, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:41:19.748 -07 000000593 INF: Z Motor: Settle wait time = 1991 ms, measure time = 110 ms (allowed 150 ms), total time = 2101 ms
17-03-17 22:41:19.748 -07 000000593 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-17 22:41:19.788 -07 000000593 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2489 ms
17-03-17 22:41:19.788 -07 000000593 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:41:19.788 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:41:19.788 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:41:19.788 -07 000000623 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:41:19.788 -07 000000541 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:41:19.788 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:41:19.788 -07 000000415 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:41:19.788 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 22:41:19.788 -07 000000541 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:41:19.798 -07 000000541 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-17 22:41:19.798 -07 000000541 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:41:19.808 -07 000000541 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 22:41:19.808 -07 000000541 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-17 22:41:19.818 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:41:19.858 -07 000000462 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:41:20.058 -07 000000608 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:41:20.058 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:41:20.058 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:41:20.068 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 22:41:20.098 -07 000000415 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:41:20.098 -07 000000462 INF: FPGA: Recv CAMSNAP
17-03-17 22:41:20.098 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 285 ms overall
17-03-17 22:41:20.178 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 117 ms.
17-03-17 22:41:20.178 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:41:20.188 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:41:20.188 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 120 ms.
17-03-17 22:41:20.198 -07 000000593 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:41:20.198 -07 000000415 INF: Autofocus start
17-03-17 22:41:20.198 -07 000000415 INF: MeasureProfile start
17-03-17 22:41:20.198 -07 000000623 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:41:20.208 -07 000000593 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:41:20.208 -07 000000593 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:41:20.218 -07 000000415 INF: MeasureProfile done
17-03-17 22:41:20.218 -07 000000415 INF: X=7  Z correction [um]=0.009724405
17-03-17 22:41:20.218 -07 000000415 INF: Autofocus finished
17-03-17 22:41:20.408 -07 000000462 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:41:20.408 -07 000000593 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:41:20.408 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.2236328125, Z-position -0.13905635461651. ----------
17-03-17 22:41:20.408 -07 000000610 INF: Cycle	66	Tile	5	Exposure Settings		A	457	G	220	T	220	C	457
17-03-17 22:41:20.418 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28890, sync = True, waitForSettling = True)
17-03-17 22:41:20.418 -07 000000610 INF: Z Motor: Moving to -0.132250 mm, started at -0.139056 mm, distance = 6.81 um
17-03-17 22:41:20.418 -07 000000610 INF: FPGA: Xmit ZDACW 28890\n [Z Motor]
17-03-17 22:41:20.418 -07 000000608 INF: FPGA: Recv ZDACW
17-03-17 22:41:20.428 -07 000000610 INF: FPGA: 'ZDACW 28890' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:41:20.428 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:41:20.428 -07 000000415 INF: FPGA: Recv ZDACR 28890
17-03-17 22:41:20.438 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:20.438 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:41:20.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:20.588 -07 000000608 INF: FPGA: Recv ZSGSRD 29882
17-03-17 22:41:20.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:41:20.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:20.598 -07 000000502 INF: FPGA: Recv ZSGSRD 29872
17-03-17 22:41:20.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:20.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:20.608 -07 000000608 INF: FPGA: Recv ZSGSRD 29877
17-03-17 22:41:20.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:20.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:20.618 -07 000000502 INF: FPGA: Recv ZSGSRD 29876
17-03-17 22:41:20.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:20.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:20.628 -07 000000541 INF: FPGA: Recv ZSGSRD 29873
17-03-17 22:41:20.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:20.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:20.638 -07 000000608 INF: FPGA: Recv ZSGSRD 29874
17-03-17 22:41:20.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:20.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:20.648 -07 000000541 INF: FPGA: Recv ZSGSRD 29874
17-03-17 22:41:20.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:20.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:20.658 -07 000000501 INF: FPGA: Recv ZSGSRD 29881
17-03-17 22:41:20.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:20.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:20.668 -07 000000502 INF: FPGA: Recv ZSGSRD 29880
17-03-17 22:41:20.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:20.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:20.678 -07 000000608 INF: FPGA: Recv ZSGSRD 29875
17-03-17 22:41:20.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:20.688 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:41:20.688 -07 000000502 INF: FPGA: Recv ZPIEZORD 25555
17-03-17 22:41:20.698 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:20.698 -07 000000610 INF: Z Motor: Piezo is near 34.6 V (nominally 0 to 100 V), expect near 44.1 V, since DAC is at 4.408 V. Piezo Error = -9.5 V.
17-03-17 22:41:20.698 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.2 um, Read 10 ADC samples: Avg = 29876 (-131.5 uncal um), Error = 0.8 uncal um, Median = 29876 (-131.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29872 (-131.4 uncal um), Max = 29882 (-131.5 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 22:41:20.698 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29876, posNoise = 6, negNoise = 4
17-03-17 22:41:20.698 -07 000000610 INF: Z Motor: After move to -0.132250, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:41:20.698 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 22:41:20.698 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:41:20.698 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:41:20.698 -07 000000415 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:41:20.698 -07 000000593 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:41:20.698 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:41:20.698 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:41:20.698 -07 000000486 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:41:20.698 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:41:20.698 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:41:20.698 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:41:20.698 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:41:20.698 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:41:20.708 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:41:20.708 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:41:20.708 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:41:20.708 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:41:20.708 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 22:41:20.718 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 22:41:20.718 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 22:41:20.718 -07 000000486 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 22:41:20.718 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 457 457 220 220 29067 150\n [Camera]
17-03-17 22:41:20.918 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:41:21.378 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 649
17-03-17 22:41:21.378 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 649
17-03-17 22:41:21.378 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:41:21.378 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 649
17-03-17 22:41:21.378 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 649
17-03-17 22:41:21.378 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:41:21.378 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:41:21.378 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-17 22:41:21.388 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:41:21.388 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 22:41:21.488 -07 000000415 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 66, FrontChillerTemperature: 4.001704,
17-03-17 22:41:21.568 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29067 842
17-03-17 22:41:21.718 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning grn on 992
17-03-17 22:41:21.758 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 22:41:21.758 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-17 22:41:21.758 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:41:21.758 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 382 ms.
17-03-17 22:41:21.758 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 22:41:21.758 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:41:21.768 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:41:21.768 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 22:41:21.768 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 22:41:21.778 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 22:41:21.938 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1212
17-03-17 22:41:21.938 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1212
17-03-17 22:41:21.938 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:41:21.938 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1212
17-03-17 22:41:21.938 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1212
17-03-17 22:41:21.938 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:41:22.058 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:41:22.058 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-17 22:41:22.058 -07 000000608 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:41:22.058 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 65. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1042, R2=1070, Total=2112. Warn if over 250 bubbles per interval.
17-03-17 22:41:22.058 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:41:22.058 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-17 22:41:22.128 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP 1405
17-03-17 22:41:22.128 -07 000000576 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:41:22.128 -07 000000610 INF: FPGA: 'CAMDBLSNAP 457 457 220 220 29067 150' command took 2 ms to send, 1406 ms to get response, and 1412 ms overall
17-03-17 22:41:22.128 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 22:41:22.128 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.2236328125, Z-Position -0.132253113958385. ------
17-03-17 22:41:22.138 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:41:22.138 -07 000000458 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.13867 mm
17-03-17 22:41:22.138 -07 000000458 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:41:22.138 -07 000000576 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-17 22:41:22.138 -07 000000576 INF: Y Motor: Moving to 64.0626 mm, started at 63.2236 mm, delta = 0.8390 mm
17-03-17 22:41:22.148 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:41:22.458 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 399 ms.
17-03-17 22:41:22.458 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 22:41:22.458 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:41:22.458 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 401 ms.
17-03-17 22:41:22.458 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-17 22:41:22.458 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:41:22.468 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:41:22.468 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 525 ms.
17-03-17 22:41:22.468 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:41:22.468 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 529 ms.
17-03-17 22:41:22.478 -07 000000512 INF: Z Motor: Entering MoveAbsStepped (DAC = 30292, sync = True, waitForSettling = False)
17-03-17 22:41:22.478 -07 000000512 INF: Z Motor: Moving to -0.138668 mm, started at -0.132253 mm, distance = -6.41 um
17-03-17 22:41:22.478 -07 000000512 INF: FPGA: Xmit ZDACW 30292\n [Z Motor]
17-03-17 22:41:22.478 -07 000000593 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:41:22.478 -07 000000593 INF: FPGA: Recv YRDPOS 129482
17-03-17 22:41:22.478 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 337 ms to get response, and 345 ms overall
17-03-17 22:41:22.478 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 327 ms to get response, and 342 ms overall
17-03-17 22:41:22.478 -07 000000576 INF: Y Motor: Encoder = 129482 = motor step 101157.8 = 63.2236 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:41:22.478 -07 000000576 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:41:22.478 -07 000000576 INF: Y Motor: Moving 1342 steps-18
17-03-17 22:41:22.478 -07 000000593 INF: FPGA: Recv ZDACW
17-03-17 22:41:22.488 -07 000000512 INF: FPGA: 'ZDACW 30292' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 22:41:22.488 -07 000000608 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:41:22.498 -07 000000576 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:41:22.508 -07 000000512 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:41:22.508 -07 000000593 INF: FPGA: Recv ZDACR 30292
17-03-17 22:41:22.518 -07 000000512 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:41:22.518 -07 000000512 INF: Z Motor: MoveAbsStepped took 36 ms (did NOT wait for settling yet))
17-03-17 22:41:22.688 -07 000000593 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:41:22.688 -07 000000608 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 204 ms overall
17-03-17 22:41:22.868 -07 000000593 INF: FPGA: Recv YMVTILE
17-03-17 22:41:22.878 -07 000000576 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 391 ms overall
17-03-17 22:41:22.908 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:41:22.918 -07 000000512 INF: FPGA: Recv YRDPOS 131187
17-03-17 22:41:22.918 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 22:41:22.918 -07 000000576 INF: Y Motor: Encoder = 131187 = motor step 102489.8 = 64.0562 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:41:22.918 -07 000000576 INF: Y Motor: Position error before settling (table move) = -13 encoder counts (-0.006 mm)
17-03-17 22:41:22.918 -07 000000576 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 391 ms, distance = 0.839 mm, average velocity = 2.146 mm/sec
17-03-17 22:41:23.868 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:41:23.868 -07 000000512 INF: FPGA: Recv YRDPOS 131188
17-03-17 22:41:23.878 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:41:23.878 -07 000000576 INF: Y Motor: Encoder = 131188 = motor step 102490.6 = 64.0566 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:41:23.898 -07 000000576 INF: Y Motor: After move to 64.062607, error = -0.005966, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:41:23.898 -07 000000576 INF: Y Motor: Position error after settling (table move) = -12 encoder counts (-0.006 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 22:41:23.898 -07 000000576 INF: Y Motor: Moved to 64.0566 after 1758 ms (table move)
17-03-17 22:41:23.898 -07 000000458 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138668 mm (DAC = 30292)
17-03-17 22:41:23.898 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:23.908 -07 000000576 INF: FPGA: Recv ZSGSRD 30869
17-03-17 22:41:23.908 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 22:41:23.908 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:23.908 -07 000000576 INF: FPGA: Recv ZSGSRD 30881
17-03-17 22:41:23.918 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:23.918 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:23.918 -07 000000576 INF: FPGA: Recv ZSGSRD 30877
17-03-17 22:41:23.928 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:23.928 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:23.928 -07 000000512 INF: FPGA: Recv ZSGSRD 30881
17-03-17 22:41:23.938 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:23.938 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:23.938 -07 000000593 INF: FPGA: Recv ZSGSRD 30867
17-03-17 22:41:23.948 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:23.948 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:23.948 -07 000000576 INF: FPGA: Recv ZSGSRD 30871
17-03-17 22:41:23.958 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:23.958 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:23.958 -07 000000593 INF: FPGA: Recv ZSGSRD 30879
17-03-17 22:41:23.968 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:23.968 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:23.968 -07 000000608 INF: FPGA: Recv ZSGSRD 30876
17-03-17 22:41:23.978 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:23.978 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:23.978 -07 000000593 INF: FPGA: Recv ZSGSRD 30886
17-03-17 22:41:23.988 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:23.988 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:23.988 -07 000000608 INF: FPGA: Recv ZSGSRD 30873
17-03-17 22:41:23.998 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:23.998 -07 000000458 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:41:23.998 -07 000000576 INF: FPGA: Recv ZPIEZORD 26828
17-03-17 22:41:24.008 -07 000000458 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:24.008 -07 000000458 INF: Z Motor: Piezo is near 37.3 V (nominally 0 to 100 V), expect near 46.2 V, since DAC is at 4.622 V. Piezo Error = -8.9 V.
17-03-17 22:41:24.008 -07 000000458 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.7 um, Read 10 ADC samples: Avg = 30876 (-137.9 uncal um), Error = 0.8 uncal um, Median = 30876 (-137.9 uncal um), StdDev = 6 (0.0 uncal um), Range = 19 (0.1 uncal um), Min = 30867 (-137.8 uncal um), Max = 30886 (-137.9 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 22:41:24.008 -07 000000458 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30876, posNoise = 10, negNoise = 9
17-03-17 22:41:24.008 -07 000000458 INF: Z Motor: After move to -0.138668, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:41:24.008 -07 000000458 INF: Z Motor: Settle wait time = 1423 ms, measure time = 105 ms (allowed 150 ms), total time = 1528 ms
17-03-17 22:41:24.008 -07 000000458 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 22:41:24.058 -07 000000458 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1917 ms
17-03-17 22:41:24.058 -07 000000458 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:41:24.058 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:41:24.058 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:41:24.058 -07 000000593 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:41:24.058 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:41:24.058 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:41:24.058 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:41:24.058 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:41:24.058 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:41:24.068 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:41:24.068 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:41:24.068 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 22:41:24.068 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 22:41:24.078 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:41:24.118 -07 000000608 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:41:24.318 -07 000000576 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:41:24.318 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:41:24.318 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:41:24.328 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 606469960, 0x0, 559484976) start.
17-03-17 22:41:24.358 -07 000000576 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:41:24.358 -07 000000458 INF: FPGA: Recv CAMSNAP
17-03-17 22:41:24.358 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 285 ms overall
17-03-17 22:41:24.438 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 606469960, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 22:41:24.438 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:41:24.438 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:41:24.438 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 116 ms.
17-03-17 22:41:24.458 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:41:24.458 -07 000000593 INF: Autofocus start
17-03-17 22:41:24.458 -07 000000593 INF: MeasureProfile start
17-03-17 22:41:24.458 -07 000000478 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:41:24.468 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:41:24.468 -07 000000512 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:41:24.468 -07 000000593 INF: MeasureProfile done
17-03-17 22:41:24.468 -07 000000593 INF: X=14  Z correction [um]=0.04339712
17-03-17 22:41:24.468 -07 000000593 INF: Autofocus finished
17-03-17 22:41:24.668 -07 000000593 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:41:24.668 -07 000000512 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:41:24.668 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.056640625, Z-position -0.138677326100146. ----------
17-03-17 22:41:24.668 -07 000000610 INF: Cycle	66	Tile	6	Exposure Settings		A	457	G	220	T	220	C	457
17-03-17 22:41:24.678 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28814, sync = True, waitForSettling = True)
17-03-17 22:41:24.678 -07 000000610 INF: Z Motor: Moving to -0.131902 mm, started at -0.138677 mm, distance = 6.78 um
17-03-17 22:41:24.678 -07 000000610 INF: FPGA: Xmit ZDACW 28814\n [Z Motor]
17-03-17 22:41:24.678 -07 000000438 INF: FPGA: Recv ZDACW
17-03-17 22:41:24.688 -07 000000610 INF: FPGA: 'ZDACW 28814' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:24.688 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:41:24.688 -07 000000478 INF: FPGA: Recv ZDACR 28814
17-03-17 22:41:24.698 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:24.698 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:41:24.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:24.848 -07 000000459 INF: FPGA: Recv ZSGSRD 29823
17-03-17 22:41:24.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:41:24.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:24.858 -07 000000512 INF: FPGA: Recv ZSGSRD 29824
17-03-17 22:41:24.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:24.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:24.868 -07 000000478 INF: FPGA: Recv ZSGSRD 29821
17-03-17 22:41:24.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:24.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:24.878 -07 000000608 INF: FPGA: Recv ZSGSRD 29822
17-03-17 22:41:24.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:24.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:24.888 -07 000000459 INF: FPGA: Recv ZSGSRD 29823
17-03-17 22:41:24.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:24.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:24.898 -07 000000608 INF: FPGA: Recv ZSGSRD 29821
17-03-17 22:41:24.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:24.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:24.908 -07 000000459 INF: FPGA: Recv ZSGSRD 29820
17-03-17 22:41:24.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:24.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:24.918 -07 000000458 INF: FPGA: Recv ZSGSRD 29824
17-03-17 22:41:24.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:24.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:24.928 -07 000000478 INF: FPGA: Recv ZSGSRD 29820
17-03-17 22:41:24.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:24.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:24.938 -07 000000438 INF: FPGA: Recv ZSGSRD 29826
17-03-17 22:41:24.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:24.948 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:41:24.948 -07 000000459 INF: FPGA: Recv ZPIEZORD 25501
17-03-17 22:41:24.958 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:24.958 -07 000000610 INF: Z Motor: Piezo is near 34.5 V (nominally 0 to 100 V), expect near 44.0 V, since DAC is at 4.397 V. Piezo Error = -9.5 V.
17-03-17 22:41:24.958 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.9 um, Read 10 ADC samples: Avg = 29822 (-131.1 uncal um), Error = 0.8 uncal um, Median = 29822 (-131.1 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 29820 (-131.1 uncal um), Max = 29826 (-131.1 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 2 (0.0 uncal um)
17-03-17 22:41:24.958 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29822, posNoise = 4, negNoise = 2
17-03-17 22:41:24.958 -07 000000610 INF: Z Motor: After move to -0.131902, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:41:24.958 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 22:41:24.958 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:41:24.958 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:41:24.958 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:41:24.958 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:41:24.958 -07 000000458 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:41:24.958 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:41:24.958 -07 000000478 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:41:24.958 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:41:24.958 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 22:41:24.958 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:41:24.958 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:41:24.958 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:41:24.958 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:41:24.968 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:41:24.968 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:41:24.968 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:41:24.968 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 22:41:24.978 -07 000000458 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 22:41:24.978 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-17 22:41:24.978 -07 000000478 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 22:41:24.978 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 457 457 220 220 28991 150\n [Camera]
17-03-17 22:41:25.178 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:41:25.638 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 649
17-03-17 22:41:25.638 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 649
17-03-17 22:41:25.638 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:41:25.638 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 649
17-03-17 22:41:25.638 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 649
17-03-17 22:41:25.638 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:41:25.638 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:41:25.638 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 656674232, 0x0, 418435064) start.
17-03-17 22:41:25.638 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:41:25.638 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 22:41:25.828 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28991 842
17-03-17 22:41:25.978 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP turning grn on 992
17-03-17 22:41:26.038 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 395 ms.
17-03-17 22:41:26.038 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 22:41:26.038 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:41:26.038 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 656674232, 0x0, 418435064) end. Duration was 397 ms.
17-03-17 22:41:26.038 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 22:41:26.038 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:41:26.038 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:41:26.038 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 22:41:26.038 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:41:26.048 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-17 22:41:26.198 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1214
17-03-17 22:41:26.198 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1214
17-03-17 22:41:26.198 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:41:26.208 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:41:26.208 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 1439795928, 0x0, 391868352) start.
17-03-17 22:41:26.208 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1214
17-03-17 22:41:26.208 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1214
17-03-17 22:41:26.208 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:41:26.208 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:41:26.208 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 1475218192, 0x0, 418435064) start.
17-03-17 22:41:26.388 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP 1405
17-03-17 22:41:26.388 -07 000000593 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:41:26.388 -07 000000610 INF: FPGA: 'CAMDBLSNAP 457 457 220 220 28991 150' command took 2 ms to send, 1407 ms to get response, and 1413 ms overall
17-03-17 22:41:26.398 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 22:41:26.398 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.056640625, Z-Position -0.13190620650273. ------
17-03-17 22:41:26.398 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:41:26.398 -07 000000608 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.13852 mm
17-03-17 22:41:26.398 -07 000000608 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:41:26.398 -07 000000458 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-17 22:41:26.398 -07 000000458 INF: Y Motor: Moving to 64.8926 mm, started at 64.0566 mm, delta = 0.8360 mm
17-03-17 22:41:26.398 -07 000000512 INF: Z Motor: Entering MoveAbsStepped (DAC = 30260, sync = True, waitForSettling = False)
17-03-17 22:41:26.398 -07 000000512 INF: Z Motor: Moving to -0.138521 mm, started at -0.131906 mm, distance = -6.62 um
17-03-17 22:41:26.398 -07 000000415 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:41:26.408 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 22:41:26.408 -07 000000576 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:41:26.418 -07 000000512 INF: FPGA: Xmit ZDACW 30260\n [Z Motor]
17-03-17 22:41:26.418 -07 000000502 INF: FPGA: Recv ZDACW
17-03-17 22:41:26.428 -07 000000458 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:41:26.428 -07 000000512 INF: FPGA: 'ZDACW 30260' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-17 22:41:26.428 -07 000000502 INF: FPGA: Recv YRDPOS 131188
17-03-17 22:41:26.438 -07 000000458 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 32 ms overall
17-03-17 22:41:26.438 -07 000000458 INF: Y Motor: Encoder = 131188 = motor step 102490.6 = 64.0566 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:41:26.438 -07 000000458 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:41:26.438 -07 000000458 INF: Y Motor: Moving 1338 steps-13
17-03-17 22:41:26.438 -07 000000512 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:41:26.438 -07 000000478 INF: FPGA: Recv ZDACR 30260
17-03-17 22:41:26.448 -07 000000512 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:41:26.448 -07 000000512 INF: Z Motor: MoveAbsStepped took 42 ms (did NOT wait for settling yet))
17-03-17 22:41:26.448 -07 000000458 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:41:26.598 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 1475218192, 0x0, 418435064) end. Duration was 393 ms.
17-03-17 22:41:26.598 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 22:41:26.598 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:41:26.598 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 1439795928, 0x0, 391868352) end. Duration was 398 ms.
17-03-17 22:41:26.598 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 22:41:26.598 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:41:26.598 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:41:26.608 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:41:26.608 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 22:41:26.608 -07 000000512 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:41:26.608 -07 000000576 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 203 ms overall
17-03-17 22:41:26.608 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-17 22:41:26.818 -07 000000415 INF: FPGA: Recv YMVTILE
17-03-17 22:41:26.818 -07 000000458 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-17 22:41:26.848 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 66, FrontChillerTemperature: 3.994908,
17-03-17 22:41:26.888 -07 000000458 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:41:26.888 -07 000000541 INF: FPGA: Recv YRDPOS 132871
17-03-17 22:41:26.898 -07 000000458 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:41:26.898 -07 000000458 INF: Y Motor: Encoder = 132871 = motor step 103805.5 = 64.8784 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:41:26.898 -07 000000458 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-17 22:41:26.898 -07 000000458 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.836 mm, average velocity = 2.155 mm/sec
17-03-17 22:41:26.998 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:41:26.998 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 65. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1042, R2=1070, Total=2112. Warn if over 250 bubbles per interval.
17-03-17 22:41:27.848 -07 000000458 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:41:27.848 -07 000000576 INF: FPGA: Recv YRDPOS 132871
17-03-17 22:41:27.858 -07 000000458 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:27.858 -07 000000458 INF: Y Motor: Encoder = 132871 = motor step 103805.5 = 64.8784 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:41:27.878 -07 000000458 INF: Y Motor: After move to 64.892609, error = -0.014191, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:41:27.878 -07 000000458 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:41:27.878 -07 000000458 INF: Y Motor: Moved to 64.8784 after 1477 ms (table move)
17-03-17 22:41:27.878 -07 000000608 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138521 mm (DAC = 30260)
17-03-17 22:41:27.878 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:27.888 -07 000000438 INF: FPGA: Recv ZSGSRD 30859
17-03-17 22:41:27.888 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 22:41:27.888 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:27.888 -07 000000576 INF: FPGA: Recv ZSGSRD 30852
17-03-17 22:41:27.898 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:41:27.898 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:27.898 -07 000000438 INF: FPGA: Recv ZSGSRD 30852
17-03-17 22:41:27.908 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:27.908 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:27.908 -07 000000459 INF: FPGA: Recv ZSGSRD 30857
17-03-17 22:41:27.918 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:27.918 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:27.918 -07 000000459 INF: FPGA: Recv ZSGSRD 30847
17-03-17 22:41:27.928 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:27.928 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:27.928 -07 000000576 INF: FPGA: Recv ZSGSRD 30853
17-03-17 22:41:27.938 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:27.938 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:27.938 -07 000000438 INF: FPGA: Recv ZSGSRD 30854
17-03-17 22:41:27.948 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:27.948 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:27.948 -07 000000576 INF: FPGA: Recv ZSGSRD 30845
17-03-17 22:41:27.958 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:27.958 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:27.958 -07 000000459 INF: FPGA: Recv ZSGSRD 30859
17-03-17 22:41:27.968 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:27.968 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:27.968 -07 000000576 INF: FPGA: Recv ZSGSRD 30858
17-03-17 22:41:27.978 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:27.978 -07 000000608 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:41:27.978 -07 000000459 INF: FPGA: Recv ZPIEZORD 26834
17-03-17 22:41:27.988 -07 000000608 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:27.988 -07 000000608 INF: Z Motor: Piezo is near 37.3 V (nominally 0 to 100 V), expect near 46.2 V, since DAC is at 4.617 V. Piezo Error = -8.8 V.
17-03-17 22:41:27.988 -07 000000608 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.5 um, Read 10 ADC samples: Avg = 30854 (-137.7 uncal um), Error = 0.8 uncal um, Median = 30854 (-137.7 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30845 (-137.7 uncal um), Max = 30859 (-137.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 22:41:27.988 -07 000000608 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30854, posNoise = 5, negNoise = 9
17-03-17 22:41:27.988 -07 000000608 INF: Z Motor: After move to -0.138521, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:41:27.988 -07 000000608 INF: Z Motor: Settle wait time = 1481 ms, measure time = 102 ms (allowed 150 ms), total time = 1583 ms
17-03-17 22:41:27.988 -07 000000608 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 22:41:28.038 -07 000000608 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1635 ms
17-03-17 22:41:28.038 -07 000000608 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:41:28.038 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:41:28.038 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:41:28.038 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:41:28.038 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:41:28.038 -07 000000458 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:41:28.048 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:41:28.048 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 22:41:28.048 -07 000000458 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:41:28.048 -07 000000458 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:41:28.048 -07 000000458 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:41:28.058 -07 000000458 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 22:41:28.058 -07 000000458 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 22:41:28.058 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:41:28.098 -07 000000438 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:41:28.298 -07 000000576 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:41:28.298 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:41:28.298 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:41:28.298 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 22:41:28.338 -07 000000576 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:41:28.338 -07 000000458 INF: FPGA: Recv CAMSNAP
17-03-17 22:41:28.338 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 284 ms overall
17-03-17 22:41:28.418 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 22:41:28.418 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:41:28.418 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:41:28.418 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 22:41:28.438 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:41:28.438 -07 000000608 INF: Autofocus start
17-03-17 22:41:28.438 -07 000000608 INF: MeasureProfile start
17-03-17 22:41:28.438 -07 000000459 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:41:28.448 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 22:41:28.448 -07 000000576 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:41:28.448 -07 000000608 INF: MeasureProfile done
17-03-17 22:41:28.448 -07 000000608 INF: X=0  Z correction [um]=-0.02394831
17-03-17 22:41:28.448 -07 000000608 INF: Autofocus finished
17-03-17 22:41:28.648 -07 000000608 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:41:28.648 -07 000000576 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:41:28.658 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87841796875, Z-position -0.138535993433028. ----------
17-03-17 22:41:28.658 -07 000000610 INF: Cycle	66	Tile	7	Exposure Settings		A	457	G	220	T	220	C	457
17-03-17 22:41:28.658 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28767, sync = True, waitForSettling = True)
17-03-17 22:41:28.658 -07 000000610 INF: Z Motor: Moving to -0.131687 mm, started at -0.138536 mm, distance = 6.85 um
17-03-17 22:41:28.658 -07 000000610 INF: FPGA: Xmit ZDACW 28767\n [Z Motor]
17-03-17 22:41:28.658 -07 000000576 INF: FPGA: Recv ZDACW
17-03-17 22:41:28.668 -07 000000610 INF: FPGA: 'ZDACW 28767' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:41:28.668 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:41:28.668 -07 000000459 INF: FPGA: Recv ZDACR 28767
17-03-17 22:41:28.678 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:28.678 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:41:28.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:28.828 -07 000000576 INF: FPGA: Recv ZSGSRD 29791
17-03-17 22:41:28.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:41:28.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:28.838 -07 000000438 INF: FPGA: Recv ZSGSRD 29787
17-03-17 22:41:28.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:28.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:28.848 -07 000000576 INF: FPGA: Recv ZSGSRD 29788
17-03-17 22:41:28.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:28.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:28.858 -07 000000623 INF: FPGA: Recv ZSGSRD 29784
17-03-17 22:41:28.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:28.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:28.868 -07 000000608 INF: FPGA: Recv ZSGSRD 29793
17-03-17 22:41:28.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:28.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:28.878 -07 000000623 INF: FPGA: Recv ZSGSRD 29791
17-03-17 22:41:28.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:28.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:28.888 -07 000000458 INF: FPGA: Recv ZSGSRD 29788
17-03-17 22:41:28.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:28.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:28.898 -07 000000459 INF: FPGA: Recv ZSGSRD 29789
17-03-17 22:41:28.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:28.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:28.908 -07 000000458 INF: FPGA: Recv ZSGSRD 29781
17-03-17 22:41:28.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:28.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:28.918 -07 000000459 INF: FPGA: Recv ZSGSRD 29792
17-03-17 22:41:28.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:28.928 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:41:28.928 -07 000000608 INF: FPGA: Recv ZPIEZORD 25476
17-03-17 22:41:28.938 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:28.938 -07 000000610 INF: Z Motor: Piezo is near 34.4 V (nominally 0 to 100 V), expect near 43.9 V, since DAC is at 4.390 V. Piezo Error = -9.5 V.
17-03-17 22:41:28.938 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.7 um, Read 10 ADC samples: Avg = 29788 (-130.9 uncal um), Error = 0.8 uncal um, Median = 29788 (-130.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29781 (-130.9 uncal um), Max = 29793 (-130.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 22:41:28.938 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29788, posNoise = 5, negNoise = 7
17-03-17 22:41:28.938 -07 000000610 INF: Z Motor: After move to -0.131687, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:41:28.938 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-17 22:41:28.938 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:41:28.938 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:41:28.938 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:41:28.938 -07 000000623 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:41:28.938 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:41:28.938 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:41:28.938 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:41:28.938 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:41:28.938 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 22:41:28.938 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:41:28.938 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:41:28.938 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:41:28.948 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:41:28.948 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:41:28.948 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:41:28.948 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:41:28.958 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 22:41:28.958 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 22:41:28.958 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 22:41:28.958 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 22:41:28.958 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 457 457 220 220 28944 150\n [Camera]
17-03-17 22:41:29.158 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:41:29.618 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 649
17-03-17 22:41:29.618 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 649
17-03-17 22:41:29.618 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:41:29.618 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:41:29.618 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-17 22:41:29.618 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 649
17-03-17 22:41:29.618 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 649
17-03-17 22:41:29.618 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:41:29.618 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:41:29.618 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-17 22:41:29.808 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28944 842
17-03-17 22:41:29.958 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning grn on 992
17-03-17 22:41:29.998 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 383 ms.
17-03-17 22:41:29.998 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 387 ms.
17-03-17 22:41:29.998 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 22:41:29.998 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:41:29.998 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-17 22:41:30.008 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:41:30.008 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:41:30.008 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 22:41:30.008 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:41:30.018 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 22:41:30.178 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1212
17-03-17 22:41:30.178 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1212
17-03-17 22:41:30.178 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:41:30.178 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:41:30.178 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) start.
17-03-17 22:41:30.178 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1212
17-03-17 22:41:30.178 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1212
17-03-17 22:41:30.178 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:41:30.178 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:41:30.178 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 22:41:30.368 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP 1405
17-03-17 22:41:30.368 -07 000000501 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:41:30.368 -07 000000610 INF: FPGA: 'CAMDBLSNAP 457 457 220 220 28944 150' command took 2 ms to send, 1405 ms to get response, and 1412 ms overall
17-03-17 22:41:30.368 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 22:41:30.368 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.87841796875, Z-Position -0.13168778328991. ------
17-03-17 22:41:30.378 -07 000000438 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:41:30.378 -07 000000623 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.13824 mm
17-03-17 22:41:30.378 -07 000000623 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:41:30.378 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:41:30.378 -07 000000502 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-17 22:41:30.378 -07 000000502 INF: Y Motor: Moving to 65.7226 mm, started at 64.8784 mm, delta = 0.8442 mm
17-03-17 22:41:30.378 -07 000000608 INF: Z Motor: Entering MoveAbsStepped (DAC = 30198, sync = True, waitForSettling = False)
17-03-17 22:41:30.378 -07 000000608 INF: Z Motor: Moving to -0.138238 mm, started at -0.131688 mm, distance = -6.55 um
17-03-17 22:41:30.388 -07 000000438 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:30.388 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:41:30.388 -07 000000459 INF: FPGA: Recv YRDPOS 132872
17-03-17 22:41:30.398 -07 000000608 INF: FPGA: Xmit ZDACW 30198\n [Z Motor]
17-03-17 22:41:30.398 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 22:41:30.398 -07 000000502 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:41:30.398 -07 000000502 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:41:30.398 -07 000000502 INF: Y Motor: Moving 1350 steps-29
17-03-17 22:41:30.398 -07 000000459 INF: FPGA: Recv ZDACW
17-03-17 22:41:30.408 -07 000000608 INF: FPGA: 'ZDACW 30198' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-17 22:41:30.408 -07 000000438 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:41:30.418 -07 000000502 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:41:30.428 -07 000000608 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:41:30.428 -07 000000458 INF: FPGA: Recv ZDACR 30198
17-03-17 22:41:30.438 -07 000000608 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:41:30.438 -07 000000608 INF: Z Motor: MoveAbsStepped took 52 ms (did NOT wait for settling yet))
17-03-17 22:41:30.578 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) end. Duration was 401 ms.
17-03-17 22:41:30.578 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 22:41:30.578 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:41:30.578 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 401 ms.
17-03-17 22:41:30.578 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 22:41:30.578 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:41:30.588 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:41:30.588 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 22:41:30.588 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-17 22:41:30.588 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-17 22:41:30.608 -07 000000415 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:41:30.608 -07 000000438 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 22:41:30.788 -07 000000415 INF: FPGA: Recv YMVTILE
17-03-17 22:41:30.788 -07 000000502 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 392 ms overall
17-03-17 22:41:30.828 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:41:30.838 -07 000000459 INF: FPGA: Recv YRDPOS 134581
17-03-17 22:41:30.838 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 22:41:30.838 -07 000000502 INF: Y Motor: Encoder = 134581 = motor step 105141.4 = 65.7134 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:41:30.838 -07 000000502 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-17 22:41:30.838 -07 000000502 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 393 ms, distance = 0.844 mm, average velocity = 2.148 mm/sec
17-03-17 22:41:31.788 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:41:31.788 -07 000000415 INF: FPGA: Recv YRDPOS 134582
17-03-17 22:41:31.798 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:41:31.798 -07 000000502 INF: Y Motor: Encoder = 134582 = motor step 105142.2 = 65.7139 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:41:31.818 -07 000000502 INF: Y Motor: After move to 65.722610, error = -0.008743, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:41:31.818 -07 000000502 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 22:41:31.818 -07 000000502 INF: Y Motor: Moved to 65.7139 after 1443 ms (table move)
17-03-17 22:41:31.828 -07 000000623 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138238 mm (DAC = 30198)
17-03-17 22:41:31.828 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:31.828 -07 000000502 INF: FPGA: Recv ZSGSRD 30808
17-03-17 22:41:31.838 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:41:31.838 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:31.838 -07 000000502 INF: FPGA: Recv ZSGSRD 30806
17-03-17 22:41:31.848 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:31.848 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:31.848 -07 000000502 INF: FPGA: Recv ZSGSRD 30812
17-03-17 22:41:31.858 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:31.858 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:31.858 -07 000000502 INF: FPGA: Recv ZSGSRD 30813
17-03-17 22:41:31.868 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:31.868 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:31.868 -07 000000502 INF: FPGA: Recv ZSGSRD 30811
17-03-17 22:41:31.878 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:31.878 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:31.878 -07 000000438 INF: FPGA: Recv ZSGSRD 30806
17-03-17 22:41:31.888 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:31.898 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:31.898 -07 000000486 INF: FPGA: Recv ZSGSRD 30811
17-03-17 22:41:31.908 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:41:31.908 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:31.908 -07 000000486 INF: FPGA: Recv ZSGSRD 30806
17-03-17 22:41:31.918 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:31.918 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:31.918 -07 000000478 INF: FPGA: Recv ZSGSRD 30811
17-03-17 22:41:31.928 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:31.928 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:31.928 -07 000000458 INF: FPGA: Recv ZSGSRD 30815
17-03-17 22:41:31.938 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:31.938 -07 000000623 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:41:31.938 -07 000000486 INF: FPGA: Recv ZPIEZORD 26820
17-03-17 22:41:31.948 -07 000000623 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:31.948 -07 000000623 INF: Z Motor: Piezo is near 37.3 V (nominally 0 to 100 V), expect near 46.1 V, since DAC is at 4.608 V. Piezo Error = -8.8 V.
17-03-17 22:41:31.948 -07 000000623 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.2 um, Read 10 ADC samples: Avg = 30810 (-137.5 uncal um), Error = 0.8 uncal um, Median = 30811 (-137.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 30806 (-137.4 uncal um), Max = 30815 (-137.5 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 22:41:31.948 -07 000000623 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30810, posNoise = 5, negNoise = 4
17-03-17 22:41:31.948 -07 000000623 INF: Z Motor: After move to -0.138238, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:41:31.948 -07 000000623 INF: Z Motor: Settle wait time = 1445 ms, measure time = 118 ms (allowed 150 ms), total time = 1563 ms
17-03-17 22:41:31.948 -07 000000623 INF: Z Motor: Waiting extra 32 ms after reading position to reach expected total of 150 ms
17-03-17 22:41:31.988 -07 000000623 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1609 ms
17-03-17 22:41:31.988 -07 000000623 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:41:31.988 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:41:31.988 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:41:31.988 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:41:31.988 -07 000000486 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:41:31.988 -07 000000459 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:41:31.988 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:41:31.998 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:41:31.998 -07 000000459 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:41:31.998 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:41:31.998 -07 000000459 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:41:31.998 -07 000000459 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:41:31.998 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 65. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1042, R2=1070, Total=2112. Warn if over 250 bubbles per interval.
17-03-17 22:41:32.008 -07 000000459 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 22:41:32.008 -07 000000459 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 22:41:32.008 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:41:32.058 -07 000000478 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:41:32.208 -07 000000459 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 66, FrontChillerTemperature: 3.989471,
17-03-17 22:41:32.258 -07 000000608 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:41:32.258 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:41:32.258 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:41:32.258 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2270629648, 0x0, 559484976) start.
17-03-17 22:41:32.298 -07 000000459 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:41:32.298 -07 000000459 INF: FPGA: Recv CAMSNAP
17-03-17 22:41:32.298 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 287 ms overall
17-03-17 22:41:32.388 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2270629648, 0x0, 559484976) end. Duration was 128 ms.
17-03-17 22:41:32.388 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:41:32.388 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 22:41:32.388 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-17 22:41:32.398 -07 000000608 INF: Autofocus start
17-03-17 22:41:32.398 -07 000000608 INF: MeasureProfile start
17-03-17 22:41:32.398 -07 000000415 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:41:32.398 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:41:32.408 -07 000000415 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:41:32.408 -07 000000415 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:41:32.408 -07 000000608 INF: MeasureProfile done
17-03-17 22:41:32.408 -07 000000608 INF: X=16  Z correction [um]=0.0530179
17-03-17 22:41:32.408 -07 000000608 INF: Autofocus finished
17-03-17 22:41:32.608 -07 000000478 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:41:32.608 -07 000000415 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 202 ms overall
17-03-17 22:41:32.608 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.7138671875, Z-position -0.13825332809879. ----------
17-03-17 22:41:32.618 -07 000000610 INF: Cycle	66	Tile	8	Exposure Settings		A	457	G	220	T	220	C	457
17-03-17 22:41:32.618 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28722, sync = True, waitForSettling = True)
17-03-17 22:41:32.618 -07 000000610 INF: Z Motor: Moving to -0.131481 mm, started at -0.138253 mm, distance = 6.77 um
17-03-17 22:41:32.618 -07 000000610 INF: FPGA: Xmit ZDACW 28722\n [Z Motor]
17-03-17 22:41:32.618 -07 000000459 INF: FPGA: Recv ZDACW
17-03-17 22:41:32.628 -07 000000610 INF: FPGA: 'ZDACW 28722' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:41:32.628 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:41:32.628 -07 000000478 INF: FPGA: Recv ZDACR 28722
17-03-17 22:41:32.638 -07 000000610 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:32.638 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:41:32.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:32.788 -07 000000478 INF: FPGA: Recv ZSGSRD 29760
17-03-17 22:41:32.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:41:32.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:32.808 -07 000000478 INF: FPGA: Recv ZSGSRD 29758
17-03-17 22:41:32.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:41:32.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:32.818 -07 000000608 INF: FPGA: Recv ZSGSRD 29756
17-03-17 22:41:32.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:32.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:32.828 -07 000000459 INF: FPGA: Recv ZSGSRD 29757
17-03-17 22:41:32.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:32.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:32.838 -07 000000415 INF: FPGA: Recv ZSGSRD 29754
17-03-17 22:41:32.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:32.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:32.848 -07 000000459 INF: FPGA: Recv ZSGSRD 29756
17-03-17 22:41:32.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:32.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:32.858 -07 000000478 INF: FPGA: Recv ZSGSRD 29757
17-03-17 22:41:32.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:32.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:32.868 -07 000000459 INF: FPGA: Recv ZSGSRD 29764
17-03-17 22:41:32.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:32.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:32.878 -07 000000608 INF: FPGA: Recv ZSGSRD 29755
17-03-17 22:41:32.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:32.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:32.888 -07 000000459 INF: FPGA: Recv ZSGSRD 29757
17-03-17 22:41:32.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:32.898 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:41:32.898 -07 000000478 INF: FPGA: Recv ZPIEZORD 25414
17-03-17 22:41:32.908 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:32.908 -07 000000610 INF: Z Motor: Piezo is near 34.3 V (nominally 0 to 100 V), expect near 43.8 V, since DAC is at 4.383 V. Piezo Error = -9.5 V.
17-03-17 22:41:32.908 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.5 um, Read 10 ADC samples: Avg = 29757 (-130.7 uncal um), Error = 0.8 uncal um, Median = 29757 (-130.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29754 (-130.7 uncal um), Max = 29764 (-130.8 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 22:41:32.908 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29757, posNoise = 7, negNoise = 3
17-03-17 22:41:32.908 -07 000000610 INF: Z Motor: After move to -0.131481, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:41:32.908 -07 000000610 INF: Z Motor: MoveAbsStepped took 288 ms)
17-03-17 22:41:32.908 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:41:32.908 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:41:32.908 -07 000000459 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:41:32.908 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:41:32.908 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:41:32.908 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:41:32.908 -07 000000478 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:41:32.908 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:41:32.908 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:41:32.908 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:41:32.908 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 22:41:32.908 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:41:32.908 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 22:41:32.908 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:41:32.918 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 22:41:32.918 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:41:32.918 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 22:41:32.918 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 12 ms.
17-03-17 22:41:32.928 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 22:41:32.928 -07 000000478 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 22:41:32.928 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 457 457 220 220 28899 150\n [Camera]
17-03-17 22:41:33.128 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:41:33.588 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 649
17-03-17 22:41:33.588 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 649
17-03-17 22:41:33.588 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:41:33.588 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:41:33.588 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start.
17-03-17 22:41:33.588 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 649
17-03-17 22:41:33.588 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 649
17-03-17 22:41:33.588 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:41:33.588 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:41:33.588 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) start.
17-03-17 22:41:33.778 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28899 842
17-03-17 22:41:33.928 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning grn on 992
17-03-17 22:41:33.968 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 22:41:33.968 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 22:41:33.968 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:41:33.968 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 382 ms.
17-03-17 22:41:33.968 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 22:41:33.968 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:41:33.978 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:41:33.978 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:41:33.978 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 22:41:33.978 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 22:41:34.148 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1212
17-03-17 22:41:34.148 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1212
17-03-17 22:41:34.148 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:41:34.148 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:41:34.148 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-17 22:41:34.148 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1212
17-03-17 22:41:34.148 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1212
17-03-17 22:41:34.148 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:41:34.148 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:41:34.148 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-17 22:41:34.338 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP 1404
17-03-17 22:41:34.338 -07 000000608 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:41:34.338 -07 000000610 INF: FPGA: 'CAMDBLSNAP 457 457 220 220 28899 150' command took 2 ms to send, 1405 ms to get response, and 1411 ms overall
17-03-17 22:41:34.338 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 22:41:34.338 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.7138671875, Z-Position -0.131488632713516. ------
17-03-17 22:41:34.348 -07 000000541 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:41:34.348 -07 000000593 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.13791 mm
17-03-17 22:41:34.348 -07 000000593 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:41:34.348 -07 000000486 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:41:34.348 -07 000000459 INF: Z Motor: Entering MoveAbsStepped (DAC = 30127, sync = True, waitForSettling = False)
17-03-17 22:41:34.348 -07 000000459 INF: Z Motor: Moving to -0.137913 mm, started at -0.131489 mm, distance = -6.42 um
17-03-17 22:41:34.348 -07 000000415 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-17 22:41:34.348 -07 000000415 INF: Y Motor: Moving to 66.5526 mm, started at 65.7139 mm, delta = 0.8387 mm
17-03-17 22:41:34.358 -07 000000541 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:34.358 -07 000000459 INF: FPGA: Xmit ZDACW 30127\n [Z Motor]
17-03-17 22:41:34.358 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 22:41:34.368 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:41:34.368 -07 000000459 INF: FPGA: 'ZDACW 30127' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 22:41:34.368 -07 000000478 INF: FPGA: Recv YRDPOS 134582
17-03-17 22:41:34.378 -07 000000541 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:41:34.378 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-17 22:41:34.378 -07 000000415 INF: Y Motor: Encoder = 134582 = motor step 105142.2 = 65.7139 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:41:34.378 -07 000000415 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:41:34.378 -07 000000415 INF: Y Motor: Moving 1342 steps-19
17-03-17 22:41:34.388 -07 000000459 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:41:34.388 -07 000000502 INF: FPGA: Recv ZDACR 30127
17-03-17 22:41:34.398 -07 000000415 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:41:34.398 -07 000000459 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:41:34.398 -07 000000459 INF: Z Motor: MoveAbsStepped took 46 ms (did NOT wait for settling yet))
17-03-17 22:41:34.528 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 22:41:34.528 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 22:41:34.528 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:41:34.538 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 384 ms.
17-03-17 22:41:34.538 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 22:41:34.538 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:41:34.538 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:41:34.538 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 22:41:34.538 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 22:41:34.538 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 22:41:34.578 -07 000000502 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:41:34.578 -07 000000541 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 22:41:34.768 -07 000000459 INF: FPGA: Recv YMVTILE
17-03-17 22:41:34.768 -07 000000415 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-17 22:41:34.808 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:41:34.818 -07 000000501 INF: FPGA: Recv YRDPOS 136271
17-03-17 22:41:34.818 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 22:41:34.818 -07 000000415 INF: Y Motor: Encoder = 136271 = motor step 106461.7 = 66.5386 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:41:34.818 -07 000000415 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-17 22:41:34.818 -07 000000415 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.839 mm, average velocity = 2.123 mm/sec
17-03-17 22:41:35.768 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:41:35.768 -07 000000458 INF: FPGA: Recv YRDPOS 136271
17-03-17 22:41:35.778 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:41:35.778 -07 000000415 INF: Y Motor: Encoder = 136271 = motor step 106461.7 = 66.5386 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:41:35.798 -07 000000415 INF: Y Motor: After move to 66.552605, error = -0.014030, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:41:35.798 -07 000000415 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:41:35.798 -07 000000415 INF: Y Motor: Moved to 66.5386 after 1452 ms (table move)
17-03-17 22:41:35.808 -07 000000593 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137913 mm (DAC = 30127)
17-03-17 22:41:35.808 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:35.808 -07 000000415 INF: FPGA: Recv ZSGSRD 30762
17-03-17 22:41:35.818 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:35.818 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:35.818 -07 000000415 INF: FPGA: Recv ZSGSRD 30762
17-03-17 22:41:35.828 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:35.828 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:35.828 -07 000000415 INF: FPGA: Recv ZSGSRD 30760
17-03-17 22:41:35.838 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:35.838 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:35.838 -07 000000459 INF: FPGA: Recv ZSGSRD 30763
17-03-17 22:41:35.848 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:41:35.848 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:35.848 -07 000000438 INF: FPGA: Recv ZSGSRD 30762
17-03-17 22:41:35.858 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:35.858 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:35.858 -07 000000459 INF: FPGA: Recv ZSGSRD 30757
17-03-17 22:41:35.868 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:35.868 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:35.868 -07 000000459 INF: FPGA: Recv ZSGSRD 30754
17-03-17 22:41:35.878 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:35.878 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:35.878 -07 000000438 INF: FPGA: Recv ZSGSRD 30756
17-03-17 22:41:35.888 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:35.888 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:35.888 -07 000000512 INF: FPGA: Recv ZSGSRD 30753
17-03-17 22:41:35.898 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:35.898 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:35.898 -07 000000512 INF: FPGA: Recv ZSGSRD 30765
17-03-17 22:41:35.908 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:35.908 -07 000000593 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:41:35.908 -07 000000512 INF: FPGA: Recv ZPIEZORD 26735
17-03-17 22:41:35.918 -07 000000593 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:35.918 -07 000000593 INF: Z Motor: Piezo is near 37.1 V (nominally 0 to 100 V), expect near 46.0 V, since DAC is at 4.597 V. Piezo Error = -8.9 V.
17-03-17 22:41:35.918 -07 000000593 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.9 um, Read 10 ADC samples: Avg = 30759 (-137.1 uncal um), Error = 0.8 uncal um, Median = 30761 (-137.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30753 (-137.1 uncal um), Max = 30765 (-137.2 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 22:41:35.918 -07 000000593 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30759, posNoise = 6, negNoise = 6
17-03-17 22:41:35.918 -07 000000593 INF: Z Motor: After move to -0.137913, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:41:35.918 -07 000000593 INF: Z Motor: Settle wait time = 1456 ms, measure time = 110 ms (allowed 150 ms), total time = 1566 ms
17-03-17 22:41:35.918 -07 000000593 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-17 22:41:35.958 -07 000000593 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1609 ms
17-03-17 22:41:35.958 -07 000000593 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:41:35.958 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:41:35.958 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:41:35.958 -07 000000541 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:41:35.958 -07 000000486 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:41:35.958 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:41:35.958 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:41:35.968 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 22:41:35.968 -07 000000486 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:41:35.968 -07 000000486 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:41:35.968 -07 000000486 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:41:35.978 -07 000000486 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 22:41:35.978 -07 000000486 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-17 22:41:35.978 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:41:36.028 -07 000000459 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:41:36.228 -07 000000458 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:41:36.228 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:41:36.228 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:41:36.228 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2387972312, 0x0, 559484976) start.
17-03-17 22:41:36.268 -07 000000415 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:41:36.268 -07 000000512 INF: FPGA: Recv CAMSNAP
17-03-17 22:41:36.268 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 285 ms to get response, and 287 ms overall
17-03-17 22:41:36.348 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2387972312, 0x0, 559484976) end. Duration was 117 ms.
17-03-17 22:41:36.348 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:41:36.348 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 22:41:36.348 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-17 22:41:36.368 -07 000000541 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:41:36.368 -07 000000593 INF: Autofocus start
17-03-17 22:41:36.368 -07 000000593 INF: MeasureProfile start
17-03-17 22:41:36.368 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:41:36.378 -07 000000541 INF: FPGA: 'FOCMRRCUR 80' command took 1 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:41:36.378 -07 000000541 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:41:36.378 -07 000000593 INF: MeasureProfile done
17-03-17 22:41:36.378 -07 000000593 INF: X=-16  Z correction [um]=-0.08128808
17-03-17 22:41:36.378 -07 000000593 INF: Autofocus finished
17-03-17 22:41:36.578 -07 000000438 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:41:36.578 -07 000000541 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:41:36.578 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.53857421875, Z-position -0.13792569327956. ----------
17-03-17 22:41:36.588 -07 000000610 INF: Cycle	66	Tile	9	Exposure Settings		A	457	G	220	T	220	C	457
17-03-17 22:41:36.588 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28622, sync = True, waitForSettling = True)
17-03-17 22:41:36.588 -07 000000610 INF: Z Motor: Moving to -0.131023 mm, started at -0.137926 mm, distance = 6.90 um
17-03-17 22:41:36.588 -07 000000610 INF: FPGA: Xmit ZDACW 28622\n [Z Motor]
17-03-17 22:41:36.588 -07 000000541 INF: FPGA: Recv ZDACW
17-03-17 22:41:36.598 -07 000000610 INF: FPGA: 'ZDACW 28622' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 22:41:36.598 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:41:36.598 -07 000000501 INF: FPGA: Recv ZDACR 28622
17-03-17 22:41:36.608 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:36.608 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:41:36.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:36.758 -07 000000593 INF: FPGA: Recv ZSGSRD 29681
17-03-17 22:41:36.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:41:36.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:36.768 -07 000000541 INF: FPGA: Recv ZSGSRD 29689
17-03-17 22:41:36.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:36.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:36.778 -07 000000593 INF: FPGA: Recv ZSGSRD 29684
17-03-17 22:41:36.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:36.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:36.788 -07 000000458 INF: FPGA: Recv ZSGSRD 29682
17-03-17 22:41:36.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:36.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:36.798 -07 000000501 INF: FPGA: Recv ZSGSRD 29687
17-03-17 22:41:36.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:36.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:36.808 -07 000000501 INF: FPGA: Recv ZSGSRD 29684
17-03-17 22:41:36.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:36.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:36.818 -07 000000458 INF: FPGA: Recv ZSGSRD 29688
17-03-17 22:41:36.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:36.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:36.828 -07 000000458 INF: FPGA: Recv ZSGSRD 29691
17-03-17 22:41:36.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:36.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:36.838 -07 000000478 INF: FPGA: Recv ZSGSRD 29686
17-03-17 22:41:36.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:36.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:36.848 -07 000000593 INF: FPGA: Recv ZSGSRD 29684
17-03-17 22:41:36.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:36.858 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:41:36.858 -07 000000593 INF: FPGA: Recv ZPIEZORD 25301
17-03-17 22:41:36.868 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:36.868 -07 000000610 INF: Z Motor: Piezo is near 34.0 V (nominally 0 to 100 V), expect near 43.7 V, since DAC is at 4.367 V. Piezo Error = -9.6 V.
17-03-17 22:41:36.868 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.0 um, Read 10 ADC samples: Avg = 29686 (-130.3 uncal um), Error = 0.8 uncal um, Median = 29685 (-130.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29681 (-130.2 uncal um), Max = 29691 (-130.3 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 22:41:36.868 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29686, posNoise = 5, negNoise = 5
17-03-17 22:41:36.868 -07 000000610 INF: Z Motor: After move to -0.131023, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:41:36.868 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-17 22:41:36.868 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:41:36.868 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:41:36.868 -07 000000478 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:41:36.868 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:41:36.868 -07 000000541 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:41:36.868 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:41:36.868 -07 000000593 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:41:36.868 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:41:36.878 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 3 ms.
17-03-17 22:41:36.878 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:41:36.878 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:41:36.878 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:41:36.878 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 22:41:36.878 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:41:36.878 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 22:41:36.878 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:41:36.888 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 13 ms.
17-03-17 22:41:36.888 -07 000000541 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 22:41:36.888 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 13 ms.
17-03-17 22:41:36.888 -07 000000593 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 22:41:36.898 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 457 457 220 220 28798 150\n [Camera]
17-03-17 22:41:36.998 -07 000000478 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:41:36.998 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 65. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1042, R2=1070, Total=2112. Warn if over 250 bubbles per interval.
17-03-17 22:41:37.098 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:41:37.558 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 649
17-03-17 22:41:37.558 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 649
17-03-17 22:41:37.558 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:41:37.558 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:41:37.558 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) start.
17-03-17 22:41:37.558 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 649
17-03-17 22:41:37.558 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 649
17-03-17 22:41:37.558 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:41:37.558 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:41:37.558 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-17 22:41:37.568 -07 000000593 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 66, FrontChillerTemperature: 4.031682,
17-03-17 22:41:37.748 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28798 842
17-03-17 22:41:37.898 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP turning grn on 992
17-03-17 22:41:37.938 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 377 ms.
17-03-17 22:41:37.938 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-17 22:41:37.938 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 22:41:37.938 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 22:41:37.938 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:41:37.938 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:41:37.938 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:41:37.938 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 22:41:37.938 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 22:41:37.948 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 22:41:38.118 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1212
17-03-17 22:41:38.118 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1212
17-03-17 22:41:38.118 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:41:38.118 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:41:38.118 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) start.
17-03-17 22:41:38.118 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1212
17-03-17 22:41:38.118 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1212
17-03-17 22:41:38.118 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:41:38.118 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:41:38.118 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 2620985504, 0x0, 418435064) start.
17-03-17 22:41:38.308 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP 1404
17-03-17 22:41:38.308 -07 000000593 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:41:38.308 -07 000000610 INF: FPGA: 'CAMDBLSNAP 457 457 220 220 28798 150' command took 2 ms to send, 1405 ms to get response, and 1414 ms overall
17-03-17 22:41:38.308 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 22:41:38.308 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.53857421875, Z-Position -0.131032513651451. ------
17-03-17 22:41:38.318 -07 000000478 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:41:38.318 -07 000000501 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.13780 mm
17-03-17 22:41:38.318 -07 000000501 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:41:38.318 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:41:38.318 -07 000000415 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-17 22:41:38.318 -07 000000415 INF: Y Motor: Moving to 67.3826 mm, started at 66.5386 mm, delta = 0.8440 mm
17-03-17 22:41:38.318 -07 000000608 INF: Z Motor: Entering MoveAbsStepped (DAC = 30102, sync = True, waitForSettling = False)
17-03-17 22:41:38.318 -07 000000608 INF: Z Motor: Moving to -0.137798 mm, started at -0.131033 mm, distance = -6.77 um
17-03-17 22:41:38.328 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:41:38.328 -07 000000478 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:38.328 -07 000000593 INF: FPGA: Recv YRDPOS 136272
17-03-17 22:41:38.338 -07 000000608 INF: FPGA: Xmit ZDACW 30102\n [Z Motor]
17-03-17 22:41:38.338 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 22:41:38.338 -07 000000415 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:41:38.338 -07 000000462 INF: FPGA: Recv ZDACW
17-03-17 22:41:38.338 -07 000000415 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:41:38.338 -07 000000415 INF: Y Motor: Moving 1350 steps-29
17-03-17 22:41:38.348 -07 000000478 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:41:38.348 -07 000000608 INF: FPGA: 'ZDACW 30102' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-17 22:41:38.358 -07 000000415 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:41:38.368 -07 000000608 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:41:38.368 -07 000000623 INF: FPGA: Recv ZDACR 30102
17-03-17 22:41:38.378 -07 000000608 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:41:38.378 -07 000000608 INF: Z Motor: MoveAbsStepped took 54 ms (did NOT wait for settling yet))
17-03-17 22:41:38.518 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) end. Duration was 401 ms.
17-03-17 22:41:38.518 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 22:41:38.518 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:41:38.518 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 2620985504, 0x0, 418435064) end. Duration was 400 ms.
17-03-17 22:41:38.518 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 22:41:38.518 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:41:38.528 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:41:38.528 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 22:41:38.528 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-17 22:41:38.528 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-17 22:41:38.548 -07 000000462 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:41:38.548 -07 000000478 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 22:41:38.728 -07 000000608 INF: FPGA: Recv YMVTILE
17-03-17 22:41:38.728 -07 000000415 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 392 ms overall
17-03-17 22:41:38.768 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:41:38.778 -07 000000541 INF: FPGA: Recv YRDPOS 137977
17-03-17 22:41:38.778 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 22:41:38.778 -07 000000415 INF: Y Motor: Encoder = 137977 = motor step 107794.5 = 67.3716 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:41:38.778 -07 000000415 INF: Y Motor: Position error before settling (table move) = -23 encoder counts (-0.011 mm)
17-03-17 22:41:38.778 -07 000000415 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 392 ms, distance = 0.844 mm, average velocity = 2.153 mm/sec
17-03-17 22:41:39.728 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:41:39.728 -07 000000541 INF: FPGA: Recv YRDPOS 137977
17-03-17 22:41:39.738 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:39.738 -07 000000415 INF: Y Motor: Encoder = 137977 = motor step 107794.5 = 67.3716 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:41:39.758 -07 000000415 INF: Y Motor: After move to 67.382607, error = -0.011024, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:41:39.758 -07 000000415 INF: Y Motor: Position error after settling (table move) = -23 encoder counts (-0.011 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:41:39.758 -07 000000415 INF: Y Motor: Moved to 67.3716 after 1440 ms (table move)
17-03-17 22:41:39.758 -07 000000501 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137798 mm (DAC = 30102)
17-03-17 22:41:39.768 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:39.768 -07 000000576 INF: FPGA: Recv ZSGSRD 30743
17-03-17 22:41:39.778 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:39.778 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:39.778 -07 000000608 INF: FPGA: Recv ZSGSRD 30742
17-03-17 22:41:39.788 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:39.788 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:39.788 -07 000000478 INF: FPGA: Recv ZSGSRD 30731
17-03-17 22:41:39.798 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:39.798 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:39.798 -07 000000608 INF: FPGA: Recv ZSGSRD 30743
17-03-17 22:41:39.808 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:39.808 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:39.808 -07 000000478 INF: FPGA: Recv ZSGSRD 30748
17-03-17 22:41:39.818 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:39.818 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:39.818 -07 000000458 INF: FPGA: Recv ZSGSRD 30733
17-03-17 22:41:39.828 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:39.828 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:39.828 -07 000000438 INF: FPGA: Recv ZSGSRD 30741
17-03-17 22:41:39.838 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:39.838 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:39.838 -07 000000459 INF: FPGA: Recv ZSGSRD 30736
17-03-17 22:41:39.848 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:39.848 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:39.848 -07 000000486 INF: FPGA: Recv ZSGSRD 30733
17-03-17 22:41:39.858 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:39.858 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:39.858 -07 000000478 INF: FPGA: Recv ZSGSRD 30747
17-03-17 22:41:39.868 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:39.868 -07 000000501 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:41:39.868 -07 000000608 INF: FPGA: Recv ZPIEZORD 26735
17-03-17 22:41:39.878 -07 000000501 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:39.878 -07 000000501 INF: Z Motor: Piezo is near 37.1 V (nominally 0 to 100 V), expect near 45.9 V, since DAC is at 4.593 V. Piezo Error = -8.8 V.
17-03-17 22:41:39.878 -07 000000501 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.8 um, Read 10 ADC samples: Avg = 30740 (-137.0 uncal um), Error = 0.8 uncal um, Median = 30742 (-137.0 uncal um), StdDev = 6 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 30731 (-136.9 uncal um), Max = 30748 (-137.1 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 22:41:39.878 -07 000000501 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30740, posNoise = 8, negNoise = 9
17-03-17 22:41:39.878 -07 000000501 INF: Z Motor: After move to -0.137798, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:41:39.878 -07 000000501 INF: Z Motor: Settle wait time = 1443 ms, measure time = 111 ms (allowed 150 ms), total time = 1554 ms
17-03-17 22:41:39.878 -07 000000501 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-17 22:41:39.918 -07 000000501 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1599 ms
17-03-17 22:41:39.918 -07 000000501 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:41:39.918 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:41:39.918 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:41:39.918 -07 000000486 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:41:39.918 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:41:39.918 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:41:39.918 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:41:39.928 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 22:41:39.928 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:41:39.928 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 22:41:39.928 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:41:39.938 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 22:41:39.938 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-17 22:41:39.938 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:41:39.978 -07 000000576 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:41:40.178 -07 000000608 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:41:40.178 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:41:40.188 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:41:40.188 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2402648392, 0x0, 559484976) start.
17-03-17 22:41:40.218 -07 000000415 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:41:40.218 -07 000000486 INF: FPGA: Recv CAMSNAP
17-03-17 22:41:40.218 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 285 ms overall
17-03-17 22:41:40.298 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2402648392, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 22:41:40.298 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:41:40.298 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 22:41:40.298 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 22:41:40.318 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:41:40.318 -07 000000478 INF: Autofocus start
17-03-17 22:41:40.318 -07 000000478 INF: MeasureProfile start
17-03-17 22:41:40.318 -07 000000486 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:41:40.328 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:41:40.328 -07 000000462 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:41:40.328 -07 000000478 INF: MeasureProfile done
17-03-17 22:41:40.328 -07 000000478 INF: X=0  Z correction [um]=-0.02394831
17-03-17 22:41:40.328 -07 000000478 INF: Autofocus finished
17-03-17 22:41:40.528 -07 000000459 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:41:40.528 -07 000000462 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:41:40.528 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.37158203125, Z-position -0.137803633248867. ----------
17-03-17 22:41:40.528 -07 000000610 INF: Cycle	66	Tile	10	Exposure Settings		A	457	G	220	T	220	C	457
17-03-17 22:41:40.538 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28609, sync = True, waitForSettling = True)
17-03-17 22:41:40.538 -07 000000610 INF: Z Motor: Moving to -0.130964 mm, started at -0.137804 mm, distance = 6.84 um
17-03-17 22:41:40.538 -07 000000610 INF: FPGA: Xmit ZDACW 28609\n [Z Motor]
17-03-17 22:41:40.538 -07 000000502 INF: FPGA: Recv ZDACW
17-03-17 22:41:40.548 -07 000000610 INF: FPGA: 'ZDACW 28609' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:40.548 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:41:40.548 -07 000000415 INF: FPGA: Recv ZDACR 28609
17-03-17 22:41:40.558 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:40.558 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:41:40.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:40.708 -07 000000462 INF: FPGA: Recv ZSGSRD 29681
17-03-17 22:41:40.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:40.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:40.718 -07 000000459 INF: FPGA: Recv ZSGSRD 29674
17-03-17 22:41:40.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:40.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:40.728 -07 000000501 INF: FPGA: Recv ZSGSRD 29675
17-03-17 22:41:40.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:40.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:40.738 -07 000000415 INF: FPGA: Recv ZSGSRD 29675
17-03-17 22:41:40.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:40.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:40.748 -07 000000541 INF: FPGA: Recv ZSGSRD 29681
17-03-17 22:41:40.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:40.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:40.758 -07 000000593 INF: FPGA: Recv ZSGSRD 29676
17-03-17 22:41:40.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:40.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:40.768 -07 000000462 INF: FPGA: Recv ZSGSRD 29670
17-03-17 22:41:40.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:40.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:40.778 -07 000000501 INF: FPGA: Recv ZSGSRD 29678
17-03-17 22:41:40.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:40.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:40.788 -07 000000438 INF: FPGA: Recv ZSGSRD 29686
17-03-17 22:41:40.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:40.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:40.798 -07 000000576 INF: FPGA: Recv ZSGSRD 29678
17-03-17 22:41:40.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:40.808 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:41:40.808 -07 000000486 INF: FPGA: Recv ZPIEZORD 25340
17-03-17 22:41:40.818 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:40.818 -07 000000610 INF: Z Motor: Piezo is near 34.1 V (nominally 0 to 100 V), expect near 43.7 V, since DAC is at 4.365 V. Piezo Error = -9.5 V.
17-03-17 22:41:40.818 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.0 um, Read 10 ADC samples: Avg = 29677 (-130.2 uncal um), Error = 0.8 uncal um, Median = 29677 (-130.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 29670 (-130.1 uncal um), Max = 29686 (-130.3 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 22:41:40.818 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29677, posNoise = 9, negNoise = 7
17-03-17 22:41:40.818 -07 000000610 INF: Z Motor: After move to -0.130964, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:41:40.818 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 22:41:40.818 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:41:40.818 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:41:40.818 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:41:40.818 -07 000000486 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:41:40.818 -07 000000415 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:41:40.818 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:41:40.818 -07 000000459 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:41:40.818 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:41:40.818 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:41:40.818 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:41:40.818 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:41:40.818 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:41:40.818 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 22:41:40.818 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:41:40.828 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:41:40.828 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:41:40.838 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 22:41:40.838 -07 000000415 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 22:41:40.838 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 22:41:40.838 -07 000000459 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 22:41:40.838 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 457 457 220 220 28786 150\n [Camera]
17-03-17 22:41:41.038 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:41:41.498 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 649
17-03-17 22:41:41.498 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 649
17-03-17 22:41:41.498 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:41:41.498 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:41:41.498 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) start.
17-03-17 22:41:41.508 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 649
17-03-17 22:41:41.508 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 649
17-03-17 22:41:41.508 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:41:41.508 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:41:41.508 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 2719780968, 0x0, 418435064) start.
17-03-17 22:41:41.688 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28786 842
17-03-17 22:41:41.838 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning grn on 992
17-03-17 22:41:41.878 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 2719780968, 0x0, 418435064) end. Duration was 376 ms.
17-03-17 22:41:41.878 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 22:41:41.878 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:41:41.888 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) end. Duration was 382 ms.
17-03-17 22:41:41.888 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 22:41:41.888 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:41:41.888 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:41:41.888 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:41:41.888 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 22:41:41.898 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 22:41:41.998 -07 000000459 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:41:41.998 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 65. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1042, R2=1070, Total=2112. Warn if over 250 bubbles per interval.
17-03-17 22:41:42.058 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1212
17-03-17 22:41:42.058 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1212
17-03-17 22:41:42.058 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:41:42.198 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1212
17-03-17 22:41:42.198 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1212
17-03-17 22:41:42.198 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:41:42.198 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:41:42.208 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 2755203232, 0x0, 391868352) start.
17-03-17 22:41:42.208 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:41:42.208 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) start.
17-03-17 22:41:42.258 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP 1405
17-03-17 22:41:42.258 -07 000000415 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:41:42.258 -07 000000610 INF: FPGA: 'CAMDBLSNAP 457 457 220 220 28786 150' command took 2 ms to send, 1401 ms to get response, and 1412 ms overall
17-03-17 22:41:42.258 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 22:41:42.258 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.37158203125, Z-Position -0.130974695742175. ------
17-03-17 22:41:42.258 -07 000000415 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:41:42.258 -07 000000459 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.13745 mm
17-03-17 22:41:42.258 -07 000000459 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:41:42.608 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) end. Duration was 397 ms.
17-03-17 22:41:42.608 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 22:41:42.608 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:41:42.608 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 2755203232, 0x0, 391868352) end. Duration was 403 ms.
17-03-17 22:41:42.608 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 22:41:42.608 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:41:42.608 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:41:42.608 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:41:42.608 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 548 ms.
17-03-17 22:41:42.618 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-17 22:41:42.618 -07 000000486 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-17 22:41:42.618 -07 000000486 INF: Y Motor: Moving to 68.2126 mm, started at 67.3716 mm, delta = 0.8410 mm
17-03-17 22:41:42.628 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:41:42.628 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:41:42.628 -07 000000415 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 364 ms to get response, and 367 ms overall
17-03-17 22:41:42.628 -07 000000438 INF: FPGA: Recv YRDPOS 137978
17-03-17 22:41:42.628 -07 000000438 INF: Z Motor: Entering MoveAbsStepped (DAC = 30025, sync = True, waitForSettling = False)
17-03-17 22:41:42.628 -07 000000438 INF: Z Motor: Moving to -0.137446 mm, started at -0.130975 mm, distance = -6.47 um
17-03-17 22:41:42.638 -07 000000486 INF: FPGA: 'YRDPOS' command took 2 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:42.638 -07 000000486 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:41:42.638 -07 000000438 INF: FPGA: Xmit ZDACW 30025\n [Z Motor]
17-03-17 22:41:42.638 -07 000000486 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:41:42.638 -07 000000486 INF: Y Motor: Moving 1345 steps-23
17-03-17 22:41:42.648 -07 000000415 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:41:42.658 -07 000000486 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:41:43.228 -07 000000512 INF: FPGA: Recv ZDACW
17-03-17 22:41:43.228 -07 000000512 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:41:43.228 -07 000000438 INF: FPGA: 'ZDACW 30025' command took 0 ms to send, 580 ms to get response, and 593 ms overall
17-03-17 22:41:43.228 -07 000000512 INF: FPGA: Recv YMVTILE
17-03-17 22:41:43.228 -07 000000486 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 561 ms to get response, and 587 ms overall
17-03-17 22:41:43.228 -07 000000438 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:41:43.228 -07 000000415 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 570 ms to get response, and 595 ms overall
17-03-17 22:41:43.228 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 66, FrontChillerTemperature: 3.997626,
17-03-17 22:41:43.228 -07 000000512 INF: FPGA: Recv ZDACR 30025
17-03-17 22:41:43.238 -07 000000438 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:41:43.238 -07 000000438 INF: Z Motor: MoveAbsStepped took 603 ms (did NOT wait for settling yet))
17-03-17 22:41:43.278 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:41:43.278 -07 000000502 INF: FPGA: Recv YRDPOS 139683
17-03-17 22:41:43.288 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:41:43.288 -07 000000486 INF: Y Motor: Encoder = 139683 = motor step 109127.3 = 68.2046 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:41:43.288 -07 000000486 INF: Y Motor: Position error before settling (table move) = -16 encoder counts (-0.008 mm)
17-03-17 22:41:43.288 -07 000000486 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 587 ms, distance = 0.841 mm, average velocity = 1.433 mm/sec
17-03-17 22:41:44.238 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:41:44.238 -07 000000569 INF: FPGA: Recv YRDPOS 139683
17-03-17 22:41:44.248 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:41:44.248 -07 000000486 INF: Y Motor: Encoder = 139683 = motor step 109127.3 = 68.2046 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:41:44.268 -07 000000486 INF: Y Motor: After move to 68.212608, error = -0.008018, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:41:44.268 -07 000000486 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:41:44.268 -07 000000486 INF: Y Motor: Moved to 68.2046 after 1644 ms (table move)
17-03-17 22:41:44.268 -07 000000459 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137446 mm (DAC = 30025)
17-03-17 22:41:44.268 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:44.278 -07 000000576 INF: FPGA: Recv ZSGSRD 30685
17-03-17 22:41:44.278 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 22:41:44.278 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:44.278 -07 000000415 INF: FPGA: Recv ZSGSRD 30686
17-03-17 22:41:44.288 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:41:44.288 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:44.288 -07 000000512 INF: FPGA: Recv ZSGSRD 30686
17-03-17 22:41:44.298 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:44.298 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:44.298 -07 000000486 INF: FPGA: Recv ZSGSRD 30680
17-03-17 22:41:44.308 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:44.308 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:44.308 -07 000000576 INF: FPGA: Recv ZSGSRD 30683
17-03-17 22:41:44.318 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:44.318 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:44.318 -07 000000415 INF: FPGA: Recv ZSGSRD 30688
17-03-17 22:41:44.328 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:44.328 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:44.328 -07 000000512 INF: FPGA: Recv ZSGSRD 30686
17-03-17 22:41:44.338 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:44.338 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:44.338 -07 000000569 INF: FPGA: Recv ZSGSRD 30683
17-03-17 22:41:44.348 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:44.348 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:44.348 -07 000000576 INF: FPGA: Recv ZSGSRD 30685
17-03-17 22:41:44.358 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:44.358 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:44.358 -07 000000541 INF: FPGA: Recv ZSGSRD 30684
17-03-17 22:41:44.368 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:44.368 -07 000000459 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:41:44.368 -07 000000512 INF: FPGA: Recv ZPIEZORD 26676
17-03-17 22:41:44.378 -07 000000459 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:44.378 -07 000000459 INF: Z Motor: Piezo is near 37.0 V (nominally 0 to 100 V), expect near 45.8 V, since DAC is at 4.582 V. Piezo Error = -8.8 V.
17-03-17 22:41:44.378 -07 000000459 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.4 um, Read 10 ADC samples: Avg = 30685 (-136.7 uncal um), Error = 0.8 uncal um, Median = 30685 (-136.7 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 30680 (-136.6 uncal um), Max = 30688 (-136.7 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 22:41:44.378 -07 000000459 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30685, posNoise = 3, negNoise = 5
17-03-17 22:41:44.378 -07 000000459 INF: Z Motor: After move to -0.137446, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:41:44.378 -07 000000459 INF: Z Motor: Settle wait time = 1641 ms, measure time = 102 ms (allowed 150 ms), total time = 1743 ms
17-03-17 22:41:44.378 -07 000000459 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 22:41:44.428 -07 000000459 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2161 ms
17-03-17 22:41:44.428 -07 000000459 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:41:44.428 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:41:44.428 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:41:44.428 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:41:44.428 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:41:44.428 -07 000000593 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:41:44.428 -07 000000541 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:41:44.438 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:41:44.438 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:41:44.438 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 22:41:44.438 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:41:44.448 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 22:41:44.448 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-17 22:41:44.448 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:41:44.488 -07 000000501 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:41:44.688 -07 000000576 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:41:44.688 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:41:44.688 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:41:44.698 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1389170736, 0x0, 559484976) start.
17-03-17 22:41:44.728 -07 000000462 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:41:44.728 -07 000000438 INF: FPGA: Recv CAMSNAP
17-03-17 22:41:44.728 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 284 ms overall
17-03-17 22:41:44.808 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1389170736, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 22:41:44.808 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:41:44.808 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 22:41:44.808 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 22:41:44.828 -07 000000486 INF: Autofocus start
17-03-17 22:41:44.828 -07 000000486 INF: MeasureProfile start
17-03-17 22:41:44.828 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:41:44.828 -07 000000593 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:41:44.838 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:41:44.838 -07 000000512 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:41:44.838 -07 000000486 INF: MeasureProfile done
17-03-17 22:41:44.838 -07 000000486 INF: X=16  Z correction [um]=0.0530179
17-03-17 22:41:44.838 -07 000000486 INF: Autofocus finished
17-03-17 22:41:45.038 -07 000000478 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:41:45.038 -07 000000512 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:41:45.038 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.20458984375, Z-position -0.13745030158107. ----------
17-03-17 22:41:45.038 -07 000000610 INF: Cycle	66	Tile	11	Exposure Settings		A	457	G	220	T	220	C	457
17-03-17 22:41:45.048 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28549, sync = True, waitForSettling = True)
17-03-17 22:41:45.048 -07 000000610 INF: Z Motor: Moving to -0.130689 mm, started at -0.137450 mm, distance = 6.76 um
17-03-17 22:41:45.048 -07 000000610 INF: FPGA: Xmit ZDACW 28549\n [Z Motor]
17-03-17 22:41:45.048 -07 000000576 INF: FPGA: Recv ZDACW
17-03-17 22:41:45.058 -07 000000610 INF: FPGA: 'ZDACW 28549' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:41:45.058 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:41:45.058 -07 000000462 INF: FPGA: Recv ZDACR 28549
17-03-17 22:41:45.068 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:45.068 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:41:45.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:45.218 -07 000000593 INF: FPGA: Recv ZSGSRD 29635
17-03-17 22:41:45.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:41:45.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:45.228 -07 000000501 INF: FPGA: Recv ZSGSRD 29645
17-03-17 22:41:45.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:45.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:45.238 -07 000000576 INF: FPGA: Recv ZSGSRD 29634
17-03-17 22:41:45.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:45.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:45.248 -07 000000459 INF: FPGA: Recv ZSGSRD 29627
17-03-17 22:41:45.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:45.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:45.258 -07 000000458 INF: FPGA: Recv ZSGSRD 29631
17-03-17 22:41:45.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:45.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:45.268 -07 000000541 INF: FPGA: Recv ZSGSRD 29639
17-03-17 22:41:45.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:45.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:45.278 -07 000000623 INF: FPGA: Recv ZSGSRD 29629
17-03-17 22:41:45.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:45.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:45.288 -07 000000459 INF: FPGA: Recv ZSGSRD 29628
17-03-17 22:41:45.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:45.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:45.298 -07 000000486 INF: FPGA: Recv ZSGSRD 29631
17-03-17 22:41:45.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:45.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:45.308 -07 000000569 INF: FPGA: Recv ZSGSRD 29634
17-03-17 22:41:45.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:45.318 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:41:45.318 -07 000000415 INF: FPGA: Recv ZPIEZORD 25278
17-03-17 22:41:45.328 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:45.328 -07 000000610 INF: Z Motor: Piezo is near 34.0 V (nominally 0 to 100 V), expect near 43.6 V, since DAC is at 4.356 V. Piezo Error = -9.6 V.
17-03-17 22:41:45.328 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.7 um, Read 10 ADC samples: Avg = 29633 (-129.9 uncal um), Error = 0.8 uncal um, Median = 29632 (-129.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 29627 (-129.9 uncal um), Max = 29645 (-130.0 uncal um), Pos Noise = 12 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 22:41:45.328 -07 000000610 INF: Z Motor: ADC noise = 12, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29633, posNoise = 12, negNoise = 6
17-03-17 22:41:45.328 -07 000000610 INF: Z Motor: After move to -0.130689, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:41:45.328 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 22:41:45.328 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:41:45.328 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:41:45.328 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:41:45.328 -07 000000593 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:41:45.328 -07 000000459 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:41:45.328 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:41:45.328 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:41:45.328 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:41:45.328 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 22:41:45.328 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:41:45.328 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:41:45.328 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:41:45.338 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:41:45.338 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:41:45.338 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:41:45.338 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:41:45.348 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 11 ms.
17-03-17 22:41:45.348 -07 000000459 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 22:41:45.348 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-17 22:41:45.348 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 22:41:45.348 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 457 457 220 220 28726 150\n [Camera]
17-03-17 22:41:45.548 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:41:46.008 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 650
17-03-17 22:41:46.008 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 650
17-03-17 22:41:46.008 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:41:46.008 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 650
17-03-17 22:41:46.008 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 650
17-03-17 22:41:46.008 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:41:46.018 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:41:46.018 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2420328552, 0x0, 391868352) start.
17-03-17 22:41:46.018 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:41:46.138 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2455750816, 0x0, 418435064) start.
17-03-17 22:41:46.198 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28726 842
17-03-17 22:41:46.348 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning grn on 992
17-03-17 22:41:46.408 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2420328552, 0x0, 391868352) end. Duration was 394 ms.
17-03-17 22:41:46.408 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 22:41:46.408 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:41:46.418 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:41:46.418 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-17 22:41:46.528 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2455750816, 0x0, 418435064) end. Duration was 391 ms.
17-03-17 22:41:46.528 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 511 ms.
17-03-17 22:41:46.528 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:41:46.538 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:41:46.538 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 530 ms.
17-03-17 22:41:46.568 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1212
17-03-17 22:41:46.568 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1212
17-03-17 22:41:46.568 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:41:46.568 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1212
17-03-17 22:41:46.568 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1212
17-03-17 22:41:46.568 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:41:46.568 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:41:46.578 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 656674232, 0x0, 418435064) start.
17-03-17 22:41:46.578 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:41:46.578 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 22:41:46.758 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP 1405
17-03-17 22:41:46.758 -07 000000569 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:41:46.758 -07 000000610 INF: FPGA: 'CAMDBLSNAP 457 457 220 220 28726 150' command took 2 ms to send, 1407 ms to get response, and 1412 ms overall
17-03-17 22:41:46.758 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 22:41:46.758 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.20458984375, Z-Position -0.130692030407937. ------
17-03-17 22:41:46.768 -07 000000478 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.13731 mm
17-03-17 22:41:46.768 -07 000000478 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:41:46.768 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:41:46.768 -07 000000569 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-17 22:41:46.768 -07 000000569 INF: Y Motor: Moving to 69.0426 mm, started at 68.2046 mm, delta = 0.8380 mm
17-03-17 22:41:46.778 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:41:46.978 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 399 ms.
17-03-17 22:41:46.978 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 22:41:46.978 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:41:46.978 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 656674232, 0x0, 418435064) end. Duration was 404 ms.
17-03-17 22:41:46.978 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-17 22:41:46.978 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:41:46.978 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:41:46.978 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-17 22:41:46.978 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:41:46.988 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-17 22:41:46.988 -07 000000623 INF: Z Motor: Entering MoveAbsStepped (DAC = 29995, sync = True, waitForSettling = False)
17-03-17 22:41:46.988 -07 000000623 INF: Z Motor: Moving to -0.137308 mm, started at -0.130692 mm, distance = -6.62 um
17-03-17 22:41:46.988 -07 000000623 INF: FPGA: Xmit ZDACW 29995\n [Z Motor]
17-03-17 22:41:46.998 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:41:46.998 -07 000000462 INF: FPGA: Recv YRDPOS 139684
17-03-17 22:41:46.998 -07 000000462 INF: FPGA: Recv ZDACW
17-03-17 22:41:46.998 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:41:46.998 -07 000000623 INF: FPGA: 'ZDACW 29995' command took 0 ms to send, 4 ms to get response, and 6 ms overall
17-03-17 22:41:46.998 -07 000000623 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:41:46.998 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 65. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1042, R2=1070, Total=2112. Warn if over 250 bubbles per interval.
17-03-17 22:41:46.998 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 224 ms to get response, and 231 ms overall
17-03-17 22:41:46.998 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 214 ms to get response, and 226 ms overall
17-03-17 22:41:46.998 -07 000000569 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:41:46.998 -07 000000462 INF: FPGA: Recv ZDACR 29995
17-03-17 22:41:46.998 -07 000000569 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:41:46.998 -07 000000569 INF: Y Motor: Moving 1340 steps-16
17-03-17 22:41:47.008 -07 000000623 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 22:41:47.008 -07 000000623 INF: Z Motor: MoveAbsStepped took 11 ms (did NOT wait for settling yet))
17-03-17 22:41:47.008 -07 000000608 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:41:47.018 -07 000000569 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:41:47.208 -07 000000462 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:41:47.208 -07 000000608 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 207 ms overall
17-03-17 22:41:47.388 -07 000000608 INF: FPGA: Recv YMVTILE
17-03-17 22:41:47.388 -07 000000569 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 389 ms overall
17-03-17 22:41:47.428 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:41:47.438 -07 000000623 INF: FPGA: Recv YRDPOS 141367
17-03-17 22:41:47.438 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 22:41:47.438 -07 000000569 INF: Y Motor: Encoder = 141367 = motor step 110443.0 = 69.0269 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:41:47.438 -07 000000569 INF: Y Motor: Position error before settling (table move) = -32 encoder counts (-0.016 mm)
17-03-17 22:41:47.438 -07 000000569 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 389 ms, distance = 0.838 mm, average velocity = 2.154 mm/sec
17-03-17 22:41:48.388 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:41:48.388 -07 000000462 INF: FPGA: Recv YRDPOS 141367
17-03-17 22:41:48.398 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:41:48.398 -07 000000569 INF: Y Motor: Encoder = 141367 = motor step 110443.0 = 69.0269 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:41:48.418 -07 000000569 INF: Y Motor: After move to 69.042610, error = -0.015755, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:41:48.418 -07 000000569 INF: Y Motor: Position error after settling (table move) = -32 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:41:48.418 -07 000000569 INF: Y Motor: Moved to 69.0269 after 1650 ms (table move)
17-03-17 22:41:48.428 -07 000000478 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137308 mm (DAC = 29995)
17-03-17 22:41:48.428 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:48.428 -07 000000623 INF: FPGA: Recv ZSGSRD 30659
17-03-17 22:41:48.438 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:41:48.438 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:48.438 -07 000000462 INF: FPGA: Recv ZSGSRD 30666
17-03-17 22:41:48.448 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:48.448 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:48.448 -07 000000462 INF: FPGA: Recv ZSGSRD 30664
17-03-17 22:41:48.458 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:48.458 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:48.458 -07 000000569 INF: FPGA: Recv ZSGSRD 30669
17-03-17 22:41:48.468 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:48.468 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:48.468 -07 000000462 INF: FPGA: Recv ZSGSRD 30669
17-03-17 22:41:48.478 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:48.478 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:48.478 -07 000000608 INF: FPGA: Recv ZSGSRD 30664
17-03-17 22:41:48.488 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:48.488 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:48.488 -07 000000462 INF: FPGA: Recv ZSGSRD 30656
17-03-17 22:41:48.498 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:48.498 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:48.498 -07 000000608 INF: FPGA: Recv ZSGSRD 30664
17-03-17 22:41:48.508 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:48.508 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:48.508 -07 000000608 INF: FPGA: Recv ZSGSRD 30665
17-03-17 22:41:48.518 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:48.518 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:48.518 -07 000000462 INF: FPGA: Recv ZSGSRD 30661
17-03-17 22:41:48.528 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:48.528 -07 000000478 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:41:48.528 -07 000000623 INF: FPGA: Recv ZPIEZORD 26728
17-03-17 22:41:48.538 -07 000000478 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:48.538 -07 000000478 INF: Z Motor: Piezo is near 37.1 V (nominally 0 to 100 V), expect near 45.8 V, since DAC is at 4.577 V. Piezo Error = -8.7 V.
17-03-17 22:41:48.538 -07 000000478 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.3 um, Read 10 ADC samples: Avg = 30664 (-136.5 uncal um), Error = 0.8 uncal um, Median = 30664 (-136.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30656 (-136.5 uncal um), Max = 30669 (-136.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 22:41:48.538 -07 000000478 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30664, posNoise = 5, negNoise = 8
17-03-17 22:41:48.538 -07 000000478 INF: Z Motor: After move to -0.137308, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:41:48.538 -07 000000478 INF: Z Motor: Settle wait time = 1433 ms, measure time = 109 ms (allowed 150 ms), total time = 1542 ms
17-03-17 22:41:48.538 -07 000000478 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-17 22:41:48.588 -07 000000478 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1816 ms
17-03-17 22:41:48.588 -07 000000478 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:41:48.588 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:41:48.588 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:41:48.588 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:41:48.588 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:41:48.588 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:41:48.588 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:41:48.588 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 22:41:48.588 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:41:48.598 -07 000000478 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 66, FrontChillerTemperature: 3.999021,
17-03-17 22:41:48.598 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:41:48.598 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:41:48.598 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 22:41:48.598 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 22:41:48.628 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:41:48.668 -07 000000623 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:41:48.868 -07 000000478 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:41:48.868 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:41:48.868 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:41:48.878 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1389170736, 0x0, 559484976) start.
17-03-17 22:41:48.908 -07 000000462 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:41:48.908 -07 000000458 INF: FPGA: Recv CAMSNAP
17-03-17 22:41:48.908 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 3 ms to send, 277 ms to get response, and 306 ms overall
17-03-17 22:41:48.988 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1389170736, 0x0, 559484976) end. Duration was 118 ms.
17-03-17 22:41:48.988 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:41:48.988 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:41:48.988 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 121 ms.
17-03-17 22:41:49.008 -07 000000512 INF: Autofocus start
17-03-17 22:41:49.008 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:41:49.008 -07 000000512 INF: MeasureProfile start
17-03-17 22:41:49.008 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:41:49.018 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:41:49.018 -07 000000462 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:41:49.018 -07 000000512 INF: MeasureProfile done
17-03-17 22:41:49.018 -07 000000512 INF: X=16  Z correction [um]=0.0530179
17-03-17 22:41:49.018 -07 000000512 INF: Autofocus finished
17-03-17 22:41:49.218 -07 000000459 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:41:49.218 -07 000000462 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:41:49.228 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02685546875, Z-position -0.137315393126093. ----------
17-03-17 22:41:49.228 -07 000000610 INF: Cycle	66	Tile	12	Exposure Settings		A	457	G	220	T	220	C	457
17-03-17 22:41:49.228 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28519, sync = True, waitForSettling = True)
17-03-17 22:41:49.228 -07 000000610 INF: Z Motor: Moving to -0.130552 mm, started at -0.137315 mm, distance = 6.76 um
17-03-17 22:41:49.228 -07 000000610 INF: FPGA: Xmit ZDACW 28519\n [Z Motor]
17-03-17 22:41:49.228 -07 000000459 INF: FPGA: Recv ZDACW
17-03-17 22:41:49.238 -07 000000610 INF: FPGA: 'ZDACW 28519' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 22:41:49.238 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:41:49.238 -07 000000608 INF: FPGA: Recv ZDACR 28519
17-03-17 22:41:49.248 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:49.248 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:41:49.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:49.398 -07 000000458 INF: FPGA: Recv ZSGSRD 29611
17-03-17 22:41:49.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:49.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:49.408 -07 000000623 INF: FPGA: Recv ZSGSRD 29611
17-03-17 22:41:49.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:49.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:49.418 -07 000000458 INF: FPGA: Recv ZSGSRD 29611
17-03-17 22:41:49.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:49.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:49.428 -07 000000478 INF: FPGA: Recv ZSGSRD 29610
17-03-17 22:41:49.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:49.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:49.438 -07 000000462 INF: FPGA: Recv ZSGSRD 29617
17-03-17 22:41:49.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:49.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:49.448 -07 000000623 INF: FPGA: Recv ZSGSRD 29614
17-03-17 22:41:49.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:49.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:49.458 -07 000000462 INF: FPGA: Recv ZSGSRD 29617
17-03-17 22:41:49.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:41:49.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:49.468 -07 000000569 INF: FPGA: Recv ZSGSRD 29615
17-03-17 22:41:49.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:49.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:49.478 -07 000000608 INF: FPGA: Recv ZSGSRD 29613
17-03-17 22:41:49.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:49.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:49.488 -07 000000512 INF: FPGA: Recv ZSGSRD 29615
17-03-17 22:41:49.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:49.498 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:41:49.498 -07 000000608 INF: FPGA: Recv ZPIEZORD 25271
17-03-17 22:41:49.508 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:49.508 -07 000000610 INF: Z Motor: Piezo is near 34.0 V (nominally 0 to 100 V), expect near 43.5 V, since DAC is at 4.352 V. Piezo Error = -9.5 V.
17-03-17 22:41:49.508 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.6 um, Read 10 ADC samples: Avg = 29613 (-129.8 uncal um), Error = 0.8 uncal um, Median = 29614 (-129.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 29610 (-129.8 uncal um), Max = 29617 (-129.8 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 22:41:49.508 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29613, posNoise = 4, negNoise = 3
17-03-17 22:41:49.508 -07 000000610 INF: Z Motor: After move to -0.130552, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:41:49.508 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-17 22:41:49.508 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:41:49.508 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:41:49.508 -07 000000478 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:41:49.508 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:41:49.508 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:41:49.508 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:41:49.508 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:41:49.508 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:41:49.508 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:41:49.508 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:41:49.508 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:41:49.508 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:41:49.508 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 22:41:49.508 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:41:49.508 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 22:41:49.508 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:41:49.518 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 22:41:49.518 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 22:41:49.518 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 22:41:49.518 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 22:41:49.528 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 457 457 220 220 28696 150\n [Camera]
17-03-17 22:41:49.728 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:41:50.188 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 649
17-03-17 22:41:50.188 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 649
17-03-17 22:41:50.188 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:41:50.188 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:41:50.188 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 1444201232, 0x0, 391868352) start.
17-03-17 22:41:50.188 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 649
17-03-17 22:41:50.188 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 649
17-03-17 22:41:50.188 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:41:50.188 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:41:50.188 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 1479623496, 0x0, 418435064) start.
17-03-17 22:41:50.378 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28696 842
17-03-17 22:41:50.528 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP turning grn on 992
17-03-17 22:41:50.578 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 1479623496, 0x0, 418435064) end. Duration was 385 ms.
17-03-17 22:41:50.578 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-17 22:41:50.578 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:41:50.578 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:41:50.578 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 1444201232, 0x0, 391868352) end. Duration was 393 ms.
17-03-17 22:41:50.578 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 22:41:50.578 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:41:50.578 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:41:50.578 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 22:41:50.588 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 22:41:50.748 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1212
17-03-17 22:41:50.748 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1212
17-03-17 22:41:50.748 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:41:50.748 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:41:50.748 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2491173080, 0x0, 391868352) start.
17-03-17 22:41:50.748 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1212
17-03-17 22:41:50.748 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1212
17-03-17 22:41:50.748 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:41:50.748 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:41:50.748 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-17 22:41:50.938 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP 1405
17-03-17 22:41:50.938 -07 000000569 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:41:50.938 -07 000000610 INF: FPGA: 'CAMDBLSNAP 457 457 220 220 28696 150' command took 2 ms to send, 1405 ms to get response, and 1412 ms overall
17-03-17 22:41:50.938 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 22:41:50.938 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.02685546875, Z-Position -0.130563546165102. ------
17-03-17 22:41:50.948 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:41:50.948 -07 000000458 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.13696 mm
17-03-17 22:41:50.948 -07 000000458 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:41:50.948 -07 000000608 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-17 22:41:50.948 -07 000000459 INF: Z Motor: Entering MoveAbsStepped (DAC = 29918, sync = True, waitForSettling = False)
17-03-17 22:41:50.948 -07 000000608 INF: Y Motor: Moving to 69.8726 mm, started at 69.0269 mm, delta = 0.8458 mm
17-03-17 22:41:50.948 -07 000000623 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:41:50.948 -07 000000459 INF: Z Motor: Moving to -0.136956 mm, started at -0.130564 mm, distance = -6.39 um
17-03-17 22:41:50.958 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:41:50.958 -07 000000459 INF: FPGA: Xmit ZDACW 29918\n [Z Motor]
17-03-17 22:41:50.958 -07 000000502 INF: FPGA: Recv ZDACW
17-03-17 22:41:50.968 -07 000000459 INF: FPGA: 'ZDACW 29918' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 22:41:50.968 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:41:50.968 -07 000000502 INF: FPGA: Recv YRDPOS 141368
17-03-17 22:41:50.978 -07 000000569 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:41:50.978 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-17 22:41:50.978 -07 000000608 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:41:50.978 -07 000000608 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:41:50.978 -07 000000608 INF: Y Motor: Moving 1352 steps-32
17-03-17 22:41:50.988 -07 000000459 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:41:50.988 -07 000000486 INF: FPGA: Recv ZDACR 29918
17-03-17 22:41:50.998 -07 000000459 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-17 22:41:50.998 -07 000000459 INF: Z Motor: MoveAbsStepped took 43 ms (did NOT wait for settling yet))
17-03-17 22:41:50.998 -07 000000608 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:41:51.148 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2491173080, 0x0, 391868352) end. Duration was 401 ms.
17-03-17 22:41:51.148 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 22:41:51.148 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:41:51.148 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 401 ms.
17-03-17 22:41:51.148 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 22:41:51.148 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:41:51.158 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:41:51.158 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 22:41:51.158 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-17 22:41:51.158 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-17 22:41:51.178 -07 000000478 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:41:51.178 -07 000000569 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 22:41:51.368 -07 000000569 INF: FPGA: Recv YMVTILE
17-03-17 22:41:51.368 -07 000000608 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-17 22:41:51.408 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:41:51.418 -07 000000623 INF: FPGA: Recv YRDPOS 143080
17-03-17 22:41:51.418 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 22:41:51.418 -07 000000608 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:41:51.418 -07 000000608 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-17 22:41:51.418 -07 000000608 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.846 mm, average velocity = 2.141 mm/sec
17-03-17 22:41:51.998 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:41:51.998 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 65. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1042, R2=1070, Total=2112. Warn if over 250 bubbles per interval.
17-03-17 22:41:52.368 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:41:52.368 -07 000000478 INF: FPGA: Recv YRDPOS 143080
17-03-17 22:41:52.378 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:41:52.378 -07 000000608 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:41:52.398 -07 000000608 INF: Y Motor: After move to 69.872612, error = -0.009331, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:41:52.398 -07 000000608 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:41:52.398 -07 000000608 INF: Y Motor: Moved to 69.8633 after 1451 ms (table move)
17-03-17 22:41:52.408 -07 000000458 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136956 mm (DAC = 29918)
17-03-17 22:41:52.408 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:52.408 -07 000000478 INF: FPGA: Recv ZSGSRD 30610
17-03-17 22:41:52.418 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:41:52.418 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:52.418 -07 000000623 INF: FPGA: Recv ZSGSRD 30618
17-03-17 22:41:52.428 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:52.428 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:52.428 -07 000000623 INF: FPGA: Recv ZSGSRD 30610
17-03-17 22:41:52.438 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:52.438 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:52.438 -07 000000569 INF: FPGA: Recv ZSGSRD 30608
17-03-17 22:41:52.448 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:52.448 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:52.448 -07 000000623 INF: FPGA: Recv ZSGSRD 30604
17-03-17 22:41:52.458 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:52.458 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:52.458 -07 000000623 INF: FPGA: Recv ZSGSRD 30609
17-03-17 22:41:52.468 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:52.468 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:52.468 -07 000000608 INF: FPGA: Recv ZSGSRD 30605
17-03-17 22:41:52.478 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:52.478 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:52.478 -07 000000608 INF: FPGA: Recv ZSGSRD 30606
17-03-17 22:41:52.488 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:52.488 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:52.488 -07 000000569 INF: FPGA: Recv ZSGSRD 30615
17-03-17 22:41:52.498 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:52.498 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:52.498 -07 000000623 INF: FPGA: Recv ZSGSRD 30614
17-03-17 22:41:52.508 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:52.508 -07 000000458 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:41:52.508 -07 000000569 INF: FPGA: Recv ZPIEZORD 26623
17-03-17 22:41:52.518 -07 000000458 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:52.518 -07 000000458 INF: Z Motor: Piezo is near 36.9 V (nominally 0 to 100 V), expect near 45.7 V, since DAC is at 4.565 V. Piezo Error = -8.8 V.
17-03-17 22:41:52.518 -07 000000458 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.0 um, Read 10 ADC samples: Avg = 30610 (-136.2 uncal um), Error = 0.8 uncal um, Median = 30610 (-136.2 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30604 (-136.1 uncal um), Max = 30618 (-136.2 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 22:41:52.518 -07 000000458 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30610, posNoise = 8, negNoise = 6
17-03-17 22:41:52.518 -07 000000458 INF: Z Motor: After move to -0.136956, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:41:52.518 -07 000000458 INF: Z Motor: Settle wait time = 1456 ms, measure time = 107 ms (allowed 150 ms), total time = 1563 ms
17-03-17 22:41:52.518 -07 000000458 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 22:41:52.568 -07 000000458 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1616 ms
17-03-17 22:41:52.568 -07 000000458 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:41:52.568 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:41:52.568 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:41:52.568 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:41:52.568 -07 000000478 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:41:52.568 -07 000000458 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:41:52.568 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:41:52.568 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 22:41:52.568 -07 000000458 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:41:52.578 -07 000000458 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 22:41:52.578 -07 000000458 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:41:52.578 -07 000000458 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 22:41:52.578 -07 000000458 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 22:41:52.588 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:41:52.638 -07 000000569 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:41:52.838 -07 000000569 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:41:52.838 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:41:52.838 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:41:52.838 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1113297000, 0x0, 559484976) start.
17-03-17 22:41:52.868 -07 000000569 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:41:52.878 -07 000000623 INF: FPGA: Recv CAMSNAP
17-03-17 22:41:52.878 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 286 ms overall
17-03-17 22:41:52.948 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1113297000, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 22:41:52.948 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:41:52.948 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 22:41:52.948 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 22:41:52.978 -07 000000458 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:41:52.978 -07 000000608 INF: Autofocus start
17-03-17 22:41:52.978 -07 000000608 INF: MeasureProfile start
17-03-17 22:41:52.978 -07 000000623 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:41:52.988 -07 000000458 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:41:52.988 -07 000000458 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:41:52.988 -07 000000608 INF: MeasureProfile done
17-03-17 22:41:52.988 -07 000000608 INF: X=0  Z correction [um]=-0.02394831
17-03-17 22:41:52.988 -07 000000608 INF: Autofocus finished
17-03-17 22:41:53.188 -07 000000569 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:41:53.188 -07 000000458 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:41:53.188 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86328125, Z-position -0.136968485670438. ----------
17-03-17 22:41:53.188 -07 000000610 INF: Cycle	66	Tile	13	Exposure Settings		A	457	G	220	T	220	C	457
17-03-17 22:41:53.198 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28425, sync = True, waitForSettling = True)
17-03-17 22:41:53.198 -07 000000610 INF: Z Motor: Moving to -0.130121 mm, started at -0.136968 mm, distance = 6.85 um
17-03-17 22:41:53.198 -07 000000610 INF: FPGA: Xmit ZDACW 28425\n [Z Motor]
17-03-17 22:41:53.198 -07 000000623 INF: FPGA: Recv ZDACW
17-03-17 22:41:53.208 -07 000000610 INF: FPGA: 'ZDACW 28425' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:53.208 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:41:53.208 -07 000000478 INF: FPGA: Recv ZDACR 28425
17-03-17 22:41:53.218 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:53.218 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:41:53.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:53.368 -07 000000458 INF: FPGA: Recv ZSGSRD 29546
17-03-17 22:41:53.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:53.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:53.378 -07 000000608 INF: FPGA: Recv ZSGSRD 29549
17-03-17 22:41:53.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:53.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:53.388 -07 000000623 INF: FPGA: Recv ZSGSRD 29541
17-03-17 22:41:53.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:53.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:53.398 -07 000000478 INF: FPGA: Recv ZSGSRD 29546
17-03-17 22:41:53.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:41:53.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:53.408 -07 000000608 INF: FPGA: Recv ZSGSRD 29545
17-03-17 22:41:53.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:53.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:53.418 -07 000000458 INF: FPGA: Recv ZSGSRD 29543
17-03-17 22:41:53.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:53.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:53.428 -07 000000608 INF: FPGA: Recv ZSGSRD 29547
17-03-17 22:41:53.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:53.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:53.438 -07 000000478 INF: FPGA: Recv ZSGSRD 29549
17-03-17 22:41:53.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:53.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:53.448 -07 000000415 INF: FPGA: Recv ZSGSRD 29546
17-03-17 22:41:53.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:53.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:53.458 -07 000000608 INF: FPGA: Recv ZSGSRD 29542
17-03-17 22:41:53.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:53.468 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:41:53.468 -07 000000415 INF: FPGA: Recv ZPIEZORD 25200
17-03-17 22:41:53.478 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:53.478 -07 000000610 INF: Z Motor: Piezo is near 33.8 V (nominally 0 to 100 V), expect near 43.4 V, since DAC is at 4.337 V. Piezo Error = -9.5 V.
17-03-17 22:41:53.478 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.1 um, Read 10 ADC samples: Avg = 29545 (-129.3 uncal um), Error = 0.8 uncal um, Median = 29546 (-129.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29541 (-129.3 uncal um), Max = 29549 (-129.4 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 22:41:53.478 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29545, posNoise = 4, negNoise = 4
17-03-17 22:41:53.478 -07 000000610 INF: Z Motor: After move to -0.130121, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:41:53.478 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 22:41:53.478 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:41:53.478 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:41:53.478 -07 000000478 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:41:53.478 -07 000000623 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:41:53.478 -07 000000415 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:41:53.478 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:41:53.478 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:41:53.478 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:41:53.478 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:41:53.478 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:41:53.478 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:41:53.478 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:41:53.478 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 22:41:53.478 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:41:53.488 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:41:53.488 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:41:53.498 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 13 ms.
17-03-17 22:41:53.498 -07 000000415 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 18 ms.
17-03-17 22:41:53.498 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 13 ms.
17-03-17 22:41:53.498 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 22:41:53.498 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 457 457 220 220 28602 150\n [Camera]
17-03-17 22:41:53.698 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:41:53.968 -07 000000478 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 66, FrontChillerTemperature: 4.001704,
17-03-17 22:41:54.158 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 649
17-03-17 22:41:54.158 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 649
17-03-17 22:41:54.158 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:41:54.158 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:41:54.158 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 1123567776, 0x0, 391868352) start.
17-03-17 22:41:54.158 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 649
17-03-17 22:41:54.158 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 649
17-03-17 22:41:54.168 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:41:54.168 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:41:54.168 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 1158990040, 0x0, 418435064) start.
17-03-17 22:41:54.348 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28602 842
17-03-17 22:41:54.498 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning grn on 992
17-03-17 22:41:54.558 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 1123567776, 0x0, 391868352) end. Duration was 392 ms.
17-03-17 22:41:54.558 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 22:41:54.558 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:41:54.558 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 1158990040, 0x0, 418435064) end. Duration was 389 ms.
17-03-17 22:41:54.558 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 22:41:54.558 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:41:54.558 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:41:54.558 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 22:41:54.558 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:41:54.568 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 22:41:54.718 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1212
17-03-17 22:41:54.718 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1212
17-03-17 22:41:54.728 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:41:54.728 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:41:54.728 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 22:41:54.728 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1212
17-03-17 22:41:54.728 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1212
17-03-17 22:41:54.728 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:41:54.728 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:41:54.728 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 22:41:54.918 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP 1404
17-03-17 22:41:54.918 -07 000000608 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:41:54.918 -07 000000610 INF: FPGA: 'CAMDBLSNAP 457 457 220 220 28602 150' command took 2 ms to send, 1401 ms to get response, and 1411 ms overall
17-03-17 22:41:54.918 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 22:41:54.918 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.86328125, Z-Position -0.130126699739463. ------
17-03-17 22:41:54.918 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:41:54.918 -07 000000576 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.13642 mm
17-03-17 22:41:54.918 -07 000000576 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:41:54.918 -07 000000541 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-17 22:41:54.918 -07 000000541 INF: Y Motor: Moving to 70.7026 mm, started at 69.8633 mm, delta = 0.8393 mm
17-03-17 22:41:54.918 -07 000000593 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:41:54.928 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:41:54.928 -07 000000478 INF: Z Motor: Entering MoveAbsStepped (DAC = 29800, sync = True, waitForSettling = False)
17-03-17 22:41:54.928 -07 000000478 INF: Z Motor: Moving to -0.136416 mm, started at -0.130127 mm, distance = -6.29 um
17-03-17 22:41:54.928 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:41:54.928 -07 000000569 INF: FPGA: Recv YRDPOS 143080
17-03-17 22:41:54.938 -07 000000541 INF: FPGA: 'YRDPOS' command took 1 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 22:41:54.938 -07 000000478 INF: FPGA: Xmit ZDACW 29800\n [Z Motor]
17-03-17 22:41:54.938 -07 000000541 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:41:54.938 -07 000000541 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:41:54.938 -07 000000541 INF: Y Motor: Moving 1343 steps-19
17-03-17 22:41:54.938 -07 000000608 INF: FPGA: Recv ZDACW
17-03-17 22:41:54.948 -07 000000501 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:41:54.948 -07 000000478 INF: FPGA: 'ZDACW 29800' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:41:54.958 -07 000000541 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:41:54.968 -07 000000478 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:41:54.968 -07 000000512 INF: FPGA: Recv ZDACR 29800
17-03-17 22:41:54.978 -07 000000478 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:41:54.978 -07 000000478 INF: Z Motor: MoveAbsStepped took 50 ms (did NOT wait for settling yet))
17-03-17 22:41:55.118 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 394 ms.
17-03-17 22:41:55.118 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 22:41:55.118 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:41:55.128 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 398 ms.
17-03-17 22:41:55.128 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 22:41:55.128 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:41:55.128 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:41:55.128 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 22:41:55.128 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-17 22:41:55.128 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-17 22:41:55.148 -07 000000512 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:41:55.148 -07 000000501 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 22:41:55.328 -07 000000462 INF: FPGA: Recv YMVTILE
17-03-17 22:41:55.328 -07 000000541 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-17 22:41:55.368 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:41:55.378 -07 000000569 INF: FPGA: Recv YRDPOS 144769
17-03-17 22:41:55.378 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 22:41:55.378 -07 000000541 INF: Y Motor: Encoder = 144769 = motor step 113100.8 = 70.6880 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:41:55.378 -07 000000541 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-17 22:41:55.378 -07 000000541 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.839 mm, average velocity = 2.114 mm/sec
17-03-17 22:41:56.328 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:41:56.328 -07 000000478 INF: FPGA: Recv YRDPOS 144770
17-03-17 22:41:56.338 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:41:56.338 -07 000000541 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:41:56.358 -07 000000541 INF: Y Motor: After move to 70.702606, error = -0.014130, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:41:56.358 -07 000000541 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 22:41:56.358 -07 000000541 INF: Y Motor: Moved to 70.6885 after 1436 ms (table move)
17-03-17 22:41:56.358 -07 000000576 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136416 mm (DAC = 29800)
17-03-17 22:41:56.358 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:56.368 -07 000000415 INF: FPGA: Recv ZSGSRD 30528
17-03-17 22:41:56.368 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 22:41:56.368 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:56.368 -07 000000608 INF: FPGA: Recv ZSGSRD 30515
17-03-17 22:41:56.378 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:41:56.378 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:56.378 -07 000000459 INF: FPGA: Recv ZSGSRD 30528
17-03-17 22:41:56.388 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:56.388 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:56.388 -07 000000623 INF: FPGA: Recv ZSGSRD 30531
17-03-17 22:41:56.398 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:56.398 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:56.398 -07 000000478 INF: FPGA: Recv ZSGSRD 30520
17-03-17 22:41:56.408 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:56.408 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:56.408 -07 000000623 INF: FPGA: Recv ZSGSRD 30524
17-03-17 22:41:56.418 -07 000000576 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:56.418 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:56.418 -07 000000502 INF: FPGA: Recv ZSGSRD 30525
17-03-17 22:41:56.428 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:56.428 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:56.428 -07 000000623 INF: FPGA: Recv ZSGSRD 30524
17-03-17 22:41:56.438 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:56.438 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:56.438 -07 000000623 INF: FPGA: Recv ZSGSRD 30519
17-03-17 22:41:56.448 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:56.448 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:56.448 -07 000000623 INF: FPGA: Recv ZSGSRD 30519
17-03-17 22:41:56.458 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:56.458 -07 000000576 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:41:56.458 -07 000000541 INF: FPGA: Recv ZPIEZORD 26508
17-03-17 22:41:56.468 -07 000000576 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:56.468 -07 000000576 INF: Z Motor: Piezo is near 36.6 V (nominally 0 to 100 V), expect near 45.5 V, since DAC is at 4.547 V. Piezo Error = -8.8 V.
17-03-17 22:41:56.468 -07 000000576 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.4 um, Read 10 ADC samples: Avg = 30523 (-135.6 uncal um), Error = 0.8 uncal um, Median = 30524 (-135.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 30515 (-135.6 uncal um), Max = 30531 (-135.7 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 22:41:56.468 -07 000000576 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30523, posNoise = 8, negNoise = 8
17-03-17 22:41:56.468 -07 000000576 INF: Z Motor: After move to -0.136416, error = 0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:41:56.468 -07 000000576 INF: Z Motor: Settle wait time = 1438 ms, measure time = 102 ms (allowed 150 ms), total time = 1540 ms
17-03-17 22:41:56.468 -07 000000576 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 22:41:56.518 -07 000000576 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1593 ms
17-03-17 22:41:56.518 -07 000000576 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:41:56.518 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:41:56.518 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:41:56.518 -07 000000623 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:41:56.518 -07 000000478 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:41:56.518 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:41:56.518 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:41:56.518 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:41:56.518 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:41:56.528 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 22:41:56.528 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:41:56.538 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-17 22:41:56.538 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-17 22:41:56.538 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:41:56.578 -07 000000502 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:41:56.778 -07 000000576 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:41:56.778 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:41:56.778 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:41:56.778 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2218332320, 0x0, 559484976) start.
17-03-17 22:41:56.818 -07 000000576 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:41:56.818 -07 000000541 INF: FPGA: Recv CAMSNAP
17-03-17 22:41:56.818 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 284 ms overall
17-03-17 22:41:56.898 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2218332320, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 22:41:56.898 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:41:56.898 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 22:41:56.898 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 22:41:56.918 -07 000000623 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:41:56.918 -07 000000576 INF: Autofocus start
17-03-17 22:41:56.918 -07 000000576 INF: MeasureProfile start
17-03-17 22:41:56.918 -07 000000541 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:41:56.928 -07 000000623 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:41:56.928 -07 000000623 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:41:56.938 -07 000000576 INF: MeasureProfile done
17-03-17 22:41:56.938 -07 000000576 INF: X=16  Z correction [um]=0.0530179
17-03-17 22:41:56.938 -07 000000576 INF: Autofocus finished
17-03-17 22:41:56.998 -07 000000478 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:41:56.998 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 65. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1042, R2=1070, Total=2112. Warn if over 250 bubbles per interval.
17-03-17 22:41:57.128 -07 000000576 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:41:57.128 -07 000000623 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 202 ms overall
17-03-17 22:41:57.128 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.6884765625, Z-position -0.136409579214105. ----------
17-03-17 22:41:57.128 -07 000000610 INF: Cycle	66	Tile	14	Exposure Settings		A	457	G	220	T	220	C	457
17-03-17 22:41:57.138 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28324, sync = True, waitForSettling = True)
17-03-17 22:41:57.138 -07 000000610 INF: Z Motor: Moving to -0.129659 mm, started at -0.136410 mm, distance = 6.75 um
17-03-17 22:41:57.138 -07 000000610 INF: FPGA: Xmit ZDACW 28324\n [Z Motor]
17-03-17 22:41:57.138 -07 000000576 INF: FPGA: Recv ZDACW
17-03-17 22:41:57.148 -07 000000610 INF: FPGA: 'ZDACW 28324' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:41:57.148 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:41:57.148 -07 000000502 INF: FPGA: Recv ZDACR 28324
17-03-17 22:41:57.158 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:57.158 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:41:57.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:57.308 -07 000000576 INF: FPGA: Recv ZSGSRD 29472
17-03-17 22:41:57.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:41:57.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:57.318 -07 000000623 INF: FPGA: Recv ZSGSRD 29472
17-03-17 22:41:57.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:57.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:57.328 -07 000000576 INF: FPGA: Recv ZSGSRD 29471
17-03-17 22:41:57.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:57.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:57.338 -07 000000541 INF: FPGA: Recv ZSGSRD 29474
17-03-17 22:41:57.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:57.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:57.348 -07 000000541 INF: FPGA: Recv ZSGSRD 29478
17-03-17 22:41:57.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:57.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:57.358 -07 000000478 INF: FPGA: Recv ZSGSRD 29471
17-03-17 22:41:57.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:57.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:57.368 -07 000000541 INF: FPGA: Recv ZSGSRD 29472
17-03-17 22:41:57.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:57.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:57.378 -07 000000478 INF: FPGA: Recv ZSGSRD 29469
17-03-17 22:41:57.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:57.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:57.388 -07 000000478 INF: FPGA: Recv ZSGSRD 29474
17-03-17 22:41:57.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:57.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:41:57.398 -07 000000576 INF: FPGA: Recv ZSGSRD 29473
17-03-17 22:41:57.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:57.408 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:41:57.408 -07 000000541 INF: FPGA: Recv ZPIEZORD 25117
17-03-17 22:41:57.418 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:41:57.418 -07 000000610 INF: Z Motor: Piezo is near 33.7 V (nominally 0 to 100 V), expect near 43.2 V, since DAC is at 4.322 V. Piezo Error = -9.6 V.
17-03-17 22:41:57.418 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.7 um, Read 10 ADC samples: Avg = 29473 (-128.9 uncal um), Error = 0.8 uncal um, Median = 29472 (-128.9 uncal um), StdDev = 2 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29469 (-128.9 uncal um), Max = 29478 (-128.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 22:41:57.418 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29473, posNoise = 5, negNoise = 4
17-03-17 22:41:57.418 -07 000000610 INF: Z Motor: After move to -0.129659, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:41:57.418 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 22:41:57.418 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:41:57.418 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:41:57.418 -07 000000623 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:41:57.418 -07 000000541 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:41:57.418 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:41:57.418 -07 000000478 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:41:57.418 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:41:57.418 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:41:57.418 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:41:57.418 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:41:57.418 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-17 22:41:57.418 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:41:57.428 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 22:41:57.428 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:41:57.428 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 22:41:57.428 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:41:57.438 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 22:41:57.438 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 22:41:57.438 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 22:41:57.438 -07 000000478 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 22:41:57.438 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 457 457 220 220 28501 150\n [Camera]
17-03-17 22:41:57.638 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:41:58.098 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 652
17-03-17 22:41:58.098 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 652
17-03-17 22:41:58.098 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:41:58.098 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:41:58.098 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 2237413704, 0x0, 391868352) start.
17-03-17 22:41:58.098 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 652
17-03-17 22:41:58.098 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 652
17-03-17 22:41:58.098 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:41:58.098 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:41:58.098 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 22:41:58.288 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28501 842
17-03-17 22:41:58.438 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP turning grn on 992
17-03-17 22:41:58.468 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 373 ms.
17-03-17 22:41:58.478 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-17 22:41:58.478 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:41:58.478 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 2237413704, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 22:41:58.478 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 22:41:58.478 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:41:58.478 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:41:58.478 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:41:58.478 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 22:41:58.488 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-17 22:41:58.658 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1212
17-03-17 22:41:58.658 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1212
17-03-17 22:41:58.658 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:41:58.658 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:41:58.658 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start.
17-03-17 22:41:58.658 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1212
17-03-17 22:41:58.658 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1212
17-03-17 22:41:58.658 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:41:58.658 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:41:58.658 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 2369425112, 0x0, 418435064) start.
17-03-17 22:41:58.848 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP 1405
17-03-17 22:41:58.848 -07 000000486 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:41:58.848 -07 000000610 INF: FPGA: 'CAMDBLSNAP 457 457 220 220 28501 150' command took 2 ms to send, 1404 ms to get response, and 1412 ms overall
17-03-17 22:41:58.848 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 22:41:58.848 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.6884765625, Z-Position -0.129664156465256. ------
17-03-17 22:41:58.848 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:41:58.848 -07 000000478 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.13637 mm
17-03-17 22:41:58.858 -07 000000478 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:41:58.858 -07 000000486 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-17 22:41:58.858 -07 000000486 INF: Y Motor: Moving to 71.5326 mm, started at 70.6885 mm, delta = 0.8441 mm
17-03-17 22:41:58.858 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:41:58.858 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 3 ms to get response, and 3 ms overall
17-03-17 22:41:58.858 -07 000000541 INF: Z Motor: Entering MoveAbsStepped (DAC = 29791, sync = True, waitForSettling = False)
17-03-17 22:41:58.858 -07 000000541 INF: Z Motor: Moving to -0.136374 mm, started at -0.129664 mm, distance = -6.71 um
17-03-17 22:41:58.858 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:41:58.858 -07 000000608 INF: FPGA: Recv YRDPOS 144770
17-03-17 22:41:58.868 -07 000000486 INF: FPGA: 'YRDPOS' command took 1 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:41:58.868 -07 000000486 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:41:58.868 -07 000000486 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:41:58.868 -07 000000486 INF: Y Motor: Moving 1351 steps-30
17-03-17 22:41:58.868 -07 000000502 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:41:58.878 -07 000000541 INF: FPGA: Xmit ZDACW 29791\n [Z Motor]
17-03-17 22:41:58.878 -07 000000458 INF: FPGA: Recv ZDACW
17-03-17 22:41:58.888 -07 000000541 INF: FPGA: 'ZDACW 29791' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 22:41:58.888 -07 000000486 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:41:58.898 -07 000000541 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:41:58.898 -07 000000512 INF: FPGA: Recv ZDACR 29791
17-03-17 22:41:58.908 -07 000000541 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:41:58.908 -07 000000541 INF: Z Motor: MoveAbsStepped took 46 ms (did NOT wait for settling yet))
17-03-17 22:41:59.058 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 400 ms.
17-03-17 22:41:59.058 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 22:41:59.058 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:41:59.058 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 2369425112, 0x0, 418435064) end. Duration was 400 ms.
17-03-17 22:41:59.058 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 22:41:59.058 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:41:59.068 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:41:59.068 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 22:41:59.068 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-17 22:41:59.068 -07 000000608 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:41:59.068 -07 000000502 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 211 ms overall
17-03-17 22:41:59.068 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-17 22:41:59.258 -07 000000512 INF: FPGA: Recv YMVTILE
17-03-17 22:41:59.258 -07 000000486 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 396 ms overall
17-03-17 22:41:59.308 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:41:59.308 -07 000000415 INF: FPGA: Recv YRDPOS 146470
17-03-17 22:41:59.318 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:41:59.318 -07 000000486 INF: Y Motor: Encoder = 146470 = motor step 114429.7 = 71.5186 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:41:59.318 -07 000000486 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-17 22:41:59.318 -07 000000486 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 396 ms, distance = 0.844 mm, average velocity = 2.132 mm/sec
17-03-17 22:41:59.328 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 66, FrontChillerTemperature: 4.033041,
17-03-17 22:42:00.268 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:42:00.268 -07 000000623 INF: FPGA: Recv YRDPOS 146470
17-03-17 22:42:00.278 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:42:00.278 -07 000000486 INF: Y Motor: Encoder = 146470 = motor step 114429.7 = 71.5186 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:42:00.298 -07 000000486 INF: Y Motor: After move to 71.532608, error = -0.014053, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:42:00.298 -07 000000486 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:42:00.298 -07 000000486 INF: Y Motor: Moved to 71.5186 after 1443 ms (table move)
17-03-17 22:42:00.298 -07 000000478 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136374 mm (DAC = 29791)
17-03-17 22:42:00.298 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:42:00.308 -07 000000541 INF: FPGA: Recv ZSGSRD 30518
17-03-17 22:42:00.308 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 5 ms to get response, and 6 ms overall
17-03-17 22:42:00.308 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:42:00.308 -07 000000593 INF: FPGA: Recv ZSGSRD 30523
17-03-17 22:42:00.318 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 22:42:00.318 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:42:00.318 -07 000000593 INF: FPGA: Recv ZSGSRD 30518
17-03-17 22:42:00.328 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:42:00.328 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:42:00.328 -07 000000593 INF: FPGA: Recv ZSGSRD 30525
17-03-17 22:42:00.338 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:42:00.338 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:42:00.338 -07 000000486 INF: FPGA: Recv ZSGSRD 30521
17-03-17 22:42:00.348 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:42:00.348 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:42:00.348 -07 000000502 INF: FPGA: Recv ZSGSRD 30517
17-03-17 22:42:00.358 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:42:00.358 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:42:00.358 -07 000000502 INF: FPGA: Recv ZSGSRD 30517
17-03-17 22:42:00.368 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:42:00.368 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:42:00.368 -07 000000502 INF: FPGA: Recv ZSGSRD 30515
17-03-17 22:42:00.378 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:42:00.378 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:42:00.378 -07 000000502 INF: FPGA: Recv ZSGSRD 30522
17-03-17 22:42:00.388 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:42:00.388 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:42:00.388 -07 000000593 INF: FPGA: Recv ZSGSRD 30522
17-03-17 22:42:00.398 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:42:00.398 -07 000000478 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:42:00.398 -07 000000623 INF: FPGA: Recv ZPIEZORD 26521
17-03-17 22:42:00.408 -07 000000478 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:42:00.408 -07 000000478 INF: Z Motor: Piezo is near 36.7 V (nominally 0 to 100 V), expect near 45.5 V, since DAC is at 4.546 V. Piezo Error = -8.8 V.
17-03-17 22:42:00.408 -07 000000478 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.4 um, Read 10 ADC samples: Avg = 30520 (-135.6 uncal um), Error = 0.8 uncal um, Median = 30520 (-135.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 30515 (-135.6 uncal um), Max = 30525 (-135.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 22:42:00.408 -07 000000478 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30520, posNoise = 5, negNoise = 5
17-03-17 22:42:00.408 -07 000000478 INF: Z Motor: After move to -0.136374, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:42:00.408 -07 000000478 INF: Z Motor: Settle wait time = 1445 ms, measure time = 102 ms (allowed 150 ms), total time = 1547 ms
17-03-17 22:42:00.408 -07 000000478 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 22:42:00.458 -07 000000478 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1600 ms
17-03-17 22:42:00.458 -07 000000478 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:42:00.458 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:42:00.458 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:42:00.458 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:42:00.458 -07 000000541 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:42:00.458 -07 000000486 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:42:00.458 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:42:00.458 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:42:00.458 -07 000000486 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:42:00.468 -07 000000486 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 22:42:00.468 -07 000000486 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:42:00.468 -07 000000486 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 22:42:00.468 -07 000000486 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 22:42:00.478 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:42:00.518 -07 000000541 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:42:00.718 -07 000000593 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:42:00.718 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:42:00.718 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:42:00.718 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2404847376, 0x0, 559484976) start.
17-03-17 22:42:00.758 -07 000000486 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:42:00.758 -07 000000478 INF: FPGA: Recv CAMSNAP
17-03-17 22:42:00.758 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 285 ms overall
17-03-17 22:42:00.838 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2404847376, 0x0, 559484976) end. Duration was 117 ms.
17-03-17 22:42:00.838 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:42:00.838 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 22:42:00.838 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-17 22:42:00.858 -07 000000486 INF: Autofocus start
17-03-17 22:42:00.858 -07 000000486 INF: MeasureProfile start
17-03-17 22:42:00.858 -07 000000593 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:42:00.858 -07 000000541 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:42:00.868 -07 000000593 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 22:42:00.868 -07 000000593 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:42:00.868 -07 000000486 INF: MeasureProfile done
17-03-17 22:42:00.868 -07 000000486 INF: X=-112  Z correction [um]=-0.5485987
17-03-17 22:42:00.868 -07 000000486 INF: Autofocus finished
17-03-17 22:42:01.068 -07 000000478 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:42:01.068 -07 000000593 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:42:01.068 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.5185546875, Z-position -0.136390306577679. ----------
17-03-17 22:42:01.068 -07 000000610 INF: Cycle	66	Tile	15	Exposure Settings		A	457	G	220	T	220	C	457
17-03-17 22:42:01.078 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28184, sync = True, waitForSettling = True)
17-03-17 22:42:01.078 -07 000000610 INF: Z Motor: Moving to -0.129018 mm, started at -0.136390 mm, distance = 7.37 um
17-03-17 22:42:01.078 -07 000000610 INF: FPGA: Xmit ZDACW 28184\n [Z Motor]
17-03-17 22:42:01.078 -07 000000593 INF: FPGA: Recv ZDACW
17-03-17 22:42:01.088 -07 000000610 INF: FPGA: 'ZDACW 28184' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:42:01.088 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:42:01.088 -07 000000486 INF: FPGA: Recv ZDACR 28184
17-03-17 22:42:01.098 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:42:01.098 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:42:01.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:42:01.248 -07 000000608 INF: FPGA: Recv ZSGSRD 29373
17-03-17 22:42:01.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:42:01.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:42:01.258 -07 000000541 INF: FPGA: Recv ZSGSRD 29374
17-03-17 22:42:01.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:42:01.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:42:01.268 -07 000000593 INF: FPGA: Recv ZSGSRD 29371
17-03-17 22:42:01.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:42:01.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:42:01.278 -07 000000541 INF: FPGA: Recv ZSGSRD 29378
17-03-17 22:42:01.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:42:01.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:42:01.288 -07 000000608 INF: FPGA: Recv ZSGSRD 29371
17-03-17 22:42:01.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:42:01.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:42:01.298 -07 000000486 INF: FPGA: Recv ZSGSRD 29378
17-03-17 22:42:01.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:42:01.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:42:01.308 -07 000000478 INF: FPGA: Recv ZSGSRD 29374
17-03-17 22:42:01.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:42:01.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:42:01.318 -07 000000541 INF: FPGA: Recv ZSGSRD 29373
17-03-17 22:42:01.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:42:01.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:42:01.328 -07 000000486 INF: FPGA: Recv ZSGSRD 29371
17-03-17 22:42:01.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:42:01.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:42:01.338 -07 000000593 INF: FPGA: Recv ZSGSRD 29369
17-03-17 22:42:01.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:42:01.348 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:42:01.348 -07 000000593 INF: FPGA: Recv ZPIEZORD 24965
17-03-17 22:42:01.358 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:42:01.358 -07 000000610 INF: Z Motor: Piezo is near 33.3 V (nominally 0 to 100 V), expect near 43.0 V, since DAC is at 4.301 V. Piezo Error = -9.7 V.
17-03-17 22:42:01.358 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.0 um, Read 10 ADC samples: Avg = 29373 (-128.2 uncal um), Error = 0.8 uncal um, Median = 29373 (-128.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29369 (-128.2 uncal um), Max = 29378 (-128.3 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 22:42:01.358 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29373, posNoise = 5, negNoise = 4
17-03-17 22:42:01.358 -07 000000610 INF: Z Motor: After move to -0.129018, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:42:01.358 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 22:42:01.358 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:42:01.358 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:42:01.358 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:42:01.358 -07 000000541 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:42:01.358 -07 000000593 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:42:01.358 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:42:01.358 -07 000000478 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:42:01.358 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:42:01.358 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:42:01.358 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:42:01.358 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:42:01.358 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:42:01.368 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:42:01.368 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:42:01.368 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:42:01.368 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:42:01.378 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 22:42:01.378 -07 000000593 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 22:42:01.378 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 22:42:01.378 -07 000000478 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 22:42:01.378 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 457 457 220 220 28360 150\n [Camera]
17-03-17 22:42:01.578 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:42:01.998 -07 000000593 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:42:01.998 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 65. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1042, R2=1070, Total=2112. Warn if over 250 bubbles per interval.
17-03-17 22:42:02.038 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 649
17-03-17 22:42:02.038 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 649
17-03-17 22:42:02.038 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:42:02.038 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:42:02.038 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-17 22:42:02.038 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 649
17-03-17 22:42:02.038 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 649
17-03-17 22:42:02.038 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:42:02.038 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:42:02.038 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) start.
17-03-17 22:42:02.228 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28360 842
17-03-17 22:42:02.378 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP turning grn on 992
17-03-17 22:42:02.428 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 388 ms.
17-03-17 22:42:02.428 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 22:42:02.428 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:42:02.428 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) end. Duration was 386 ms.
17-03-17 22:42:02.428 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 22:42:02.428 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:42:02.428 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:42:02.428 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 22:42:02.428 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:42:02.438 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 22:42:02.598 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1212
17-03-17 22:42:02.598 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1212
17-03-17 22:42:02.598 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:42:02.598 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:42:02.598 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 2620985504, 0x0, 391868352) start.
17-03-17 22:42:02.598 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1212
17-03-17 22:42:02.598 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1212
17-03-17 22:42:02.598 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:42:02.748 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:42:02.748 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-17 22:42:02.788 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP 1405
17-03-17 22:42:02.788 -07 000000593 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:42:02.788 -07 000000610 INF: FPGA: 'CAMDBLSNAP 457 457 220 220 28360 150' command took 2 ms to send, 1406 ms to get response, and 1411 ms overall
17-03-17 22:42:02.788 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 22:42:02.788 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.5185546875, Z-Position -0.12902173525108. ------
17-03-17 22:42:02.798 -07 000000478 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:42:02.798 -07 000000569 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.13535 mm
17-03-17 22:42:02.798 -07 000000569 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:42:02.798 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:42:02.798 -07 000000438 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-17 22:42:02.798 -07 000000438 INF: Y Motor: Moving to 72.3626 mm, started at 71.5186 mm, delta = 0.8441 mm
17-03-17 22:42:02.798 -07 000000501 INF: Z Motor: Entering MoveAbsStepped (DAC = 29566, sync = True, waitForSettling = False)
17-03-17 22:42:02.798 -07 000000501 INF: Z Motor: Moving to -0.135344 mm, started at -0.129022 mm, distance = -6.32 um
17-03-17 22:42:02.808 -07 000000478 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:42:02.808 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:42:02.808 -07 000000541 INF: FPGA: Recv YRDPOS 146470
17-03-17 22:42:02.818 -07 000000501 INF: FPGA: Xmit ZDACW 29566\n [Z Motor]
17-03-17 22:42:02.818 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 22:42:02.818 -07 000000438 INF: Y Motor: Encoder = 146470 = motor step 114429.7 = 71.5186 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:42:02.818 -07 000000438 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:42:02.818 -07 000000438 INF: Y Motor: Moving 1350 steps-29
17-03-17 22:42:02.818 -07 000000576 INF: FPGA: Recv ZDACW
17-03-17 22:42:02.828 -07 000000478 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:42:02.828 -07 000000501 INF: FPGA: 'ZDACW 29566' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-17 22:42:02.838 -07 000000438 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:42:02.848 -07 000000501 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:42:02.848 -07 000000576 INF: FPGA: Recv ZDACR 29566
17-03-17 22:42:02.858 -07 000000501 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:42:02.858 -07 000000501 INF: Z Motor: MoveAbsStepped took 55 ms (did NOT wait for settling yet))
17-03-17 22:42:03.018 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 2620985504, 0x0, 391868352) end. Duration was 417 ms.
17-03-17 22:42:03.018 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 418 ms.
17-03-17 22:42:03.018 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:42:03.018 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 22:42:03.018 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 424 ms.
17-03-17 22:42:03.028 -07 000000462 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:42:03.028 -07 000000478 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 22:42:03.128 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 384 ms.
17-03-17 22:42:03.128 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-17 22:42:03.128 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:42:03.138 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 22:42:03.138 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 540 ms.
17-03-17 22:42:03.208 -07 000000576 INF: FPGA: Recv YMVTILE
17-03-17 22:42:03.208 -07 000000438 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 22:42:03.248 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:42:03.258 -07 000000541 INF: FPGA: Recv YRDPOS 148171
17-03-17 22:42:03.258 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:42:03.258 -07 000000438 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:42:03.258 -07 000000438 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 22:42:03.258 -07 000000438 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.844 mm, average velocity = 2.126 mm/sec
17-03-17 22:42:04.208 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:42:04.208 -07 000000462 INF: FPGA: Recv YRDPOS 148171
17-03-17 22:42:04.218 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:42:04.218 -07 000000438 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:42:04.238 -07 000000438 INF: Y Motor: After move to 72.362610, error = -0.013489, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:42:04.238 -07 000000438 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:42:04.238 -07 000000438 INF: Y Motor: Moved to 72.3491 after 1441 ms (table move)
17-03-17 22:42:04.238 -07 000000569 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135344 mm (DAC = 29566)
17-03-17 22:42:04.238 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:42:04.248 -07 000000462 INF: FPGA: Recv ZSGSRD 30365
17-03-17 22:42:04.248 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 22:42:04.248 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:42:04.248 -07 000000462 INF: FPGA: Recv ZSGSRD 30356
17-03-17 22:42:04.258 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:42:04.258 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:42:04.258 -07 000000462 INF: FPGA: Recv ZSGSRD 30361
17-03-17 22:42:04.268 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:42:04.268 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:42:04.268 -07 000000462 INF: FPGA: Recv ZSGSRD 30359
17-03-17 22:42:04.278 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:42:04.278 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:42:04.278 -07 000000438 INF: FPGA: Recv ZSGSRD 30358
17-03-17 22:42:04.288 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:42:04.288 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:42:04.288 -07 000000438 INF: FPGA: Recv ZSGSRD 30363
17-03-17 22:42:04.298 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:42:04.298 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:42:04.298 -07 000000438 INF: FPGA: Recv ZSGSRD 30357
17-03-17 22:42:04.308 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:42:04.308 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:42:04.308 -07 000000438 INF: FPGA: Recv ZSGSRD 30357
17-03-17 22:42:04.318 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:42:04.318 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:42:04.318 -07 000000459 INF: FPGA: Recv ZSGSRD 30357
17-03-17 22:42:04.328 -07 000000569 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:42:04.328 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:42:04.328 -07 000000608 INF: FPGA: Recv ZSGSRD 30354
17-03-17 22:42:04.338 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:42:04.338 -07 000000569 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:42:04.338 -07 000000608 INF: FPGA: Recv ZPIEZORD 26260
17-03-17 22:42:04.348 -07 000000569 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:42:04.348 -07 000000569 INF: Z Motor: Piezo is near 36.1 V (nominally 0 to 100 V), expect near 45.1 V, since DAC is at 4.511 V. Piezo Error = -9.0 V.
17-03-17 22:42:04.348 -07 000000569 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.3 um, Read 10 ADC samples: Avg = 30359 (-134.6 uncal um), Error = 0.8 uncal um, Median = 30358 (-134.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30354 (-134.5 uncal um), Max = 30365 (-134.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 22:42:04.348 -07 000000569 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30359, posNoise = 6, negNoise = 5
17-03-17 22:42:04.348 -07 000000569 INF: Z Motor: After move to -0.135344, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:42:04.348 -07 000000569 INF: Z Motor: Settle wait time = 1444 ms, measure time = 102 ms (allowed 150 ms), total time = 1546 ms
17-03-17 22:42:04.348 -07 000000569 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 22:42:04.398 -07 000000569 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1599 ms
17-03-17 22:42:04.398 -07 000000569 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:42:04.398 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:42:04.398 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:42:04.398 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:42:04.398 -07 000000541 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:42:04.398 -07 000000486 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:42:04.398 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:42:04.398 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:42:04.398 -07 000000486 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:42:04.408 -07 000000486 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 22:42:04.408 -07 000000486 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:42:04.418 -07 000000486 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 22:42:04.418 -07 000000486 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 19 ms.
17-03-17 22:42:04.418 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:42:04.468 -07 000000459 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:42:04.668 -07 000000541 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:42:04.668 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:42:04.668 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:42:04.668 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610341080, 0x0, 559484976) start.
17-03-17 22:42:04.698 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 66, FrontChillerTemperature: 4.037119,
17-03-17 22:42:04.708 -07 000000478 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:42:04.708 -07 000000486 INF: FPGA: Recv CAMSNAP
17-03-17 22:42:04.708 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 285 ms overall
17-03-17 22:42:04.798 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610341080, 0x0, 559484976) end. Duration was 125 ms.
17-03-17 22:42:04.798 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:42:04.798 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:42:04.798 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 127 ms.
17-03-17 22:42:04.808 -07 000000576 INF: Autofocus start
17-03-17 22:42:04.808 -07 000000576 INF: MeasureProfile start
17-03-17 22:42:04.808 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:42:04.808 -07 000000478 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:42:04.818 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 22:42:04.818 -07 000000501 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:42:04.818 -07 000000576 INF: MeasureProfile done
17-03-17 22:42:04.828 -07 000000576 INF: X=0  Z correction [um]=-0.02394831
17-03-17 22:42:04.828 -07 000000576 INF: Autofocus finished
17-03-17 22:42:05.018 -07 000000608 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:42:05.018 -07 000000501 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 204 ms overall
17-03-17 22:42:05.018 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.34912109375, Z-position -0.135356008422856. ----------
17-03-17 22:42:05.018 -07 000000610 INF: Cycle	66	Tile	16	Exposure Settings		A	457	G	220	T	220	C	457
17-03-17 22:42:05.028 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28074, sync = True, waitForSettling = True)
17-03-17 22:42:05.028 -07 000000610 INF: Z Motor: Moving to -0.128515 mm, started at -0.135356 mm, distance = 6.84 um
17-03-17 22:42:05.038 -07 000000610 INF: FPGA: Xmit ZDACW 28074\n [Z Motor]
17-03-17 22:42:05.038 -07 000000512 INF: FPGA: Recv ZDACW
17-03-17 22:42:05.048 -07 000000610 INF: FPGA: 'ZDACW 28074' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-17 22:42:05.068 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:42:05.068 -07 000000593 INF: FPGA: Recv ZDACR 28074
17-03-17 22:42:05.078 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:42:05.078 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:42:05.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:42:05.228 -07 000000415 INF: FPGA: Recv ZSGSRD 29295
17-03-17 22:42:05.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:42:05.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:42:05.238 -07 000000415 INF: FPGA: Recv ZSGSRD 29297
17-03-17 22:42:05.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:42:05.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:42:05.248 -07 000000593 INF: FPGA: Recv ZSGSRD 29291
17-03-17 22:42:05.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:42:05.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:42:05.258 -07 000000593 INF: FPGA: Recv ZSGSRD 29292
17-03-17 22:42:05.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:42:05.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:42:05.268 -07 000000541 INF: FPGA: Recv ZSGSRD 29300
17-03-17 22:42:05.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:42:05.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:42:05.278 -07 000000459 INF: FPGA: Recv ZSGSRD 29293
17-03-17 22:42:05.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:42:05.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:42:05.288 -07 000000541 INF: FPGA: Recv ZSGSRD 29297
17-03-17 22:42:05.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:42:05.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:42:05.298 -07 000000415 INF: FPGA: Recv ZSGSRD 29293
17-03-17 22:42:05.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:42:05.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:42:05.308 -07 000000593 INF: FPGA: Recv ZSGSRD 29298
17-03-17 22:42:05.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:42:05.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:42:05.318 -07 000000593 INF: FPGA: Recv ZSGSRD 29297
17-03-17 22:42:05.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:42:05.328 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:42:05.328 -07 000000415 INF: FPGA: Recv ZPIEZORD 24903
17-03-17 22:42:05.338 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:42:05.338 -07 000000610 INF: Z Motor: Piezo is near 33.2 V (nominally 0 to 100 V), expect near 42.8 V, since DAC is at 4.284 V. Piezo Error = -9.6 V.
17-03-17 22:42:05.338 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.5 um, Read 10 ADC samples: Avg = 29295 (-127.7 uncal um), Error = 0.8 uncal um, Median = 29296 (-127.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29291 (-127.7 uncal um), Max = 29300 (-127.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 22:42:05.338 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29295, posNoise = 5, negNoise = 4
17-03-17 22:42:05.338 -07 000000610 INF: Z Motor: After move to -0.128515, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:42:05.338 -07 000000610 INF: Z Motor: MoveAbsStepped took 308 ms)
17-03-17 22:42:05.338 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:42:05.338 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:42:05.338 -07 000000593 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:42:05.338 -07 000000541 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:42:05.338 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:42:05.338 -07 000000459 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:42:05.338 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:42:05.338 -07 000000415 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:42:05.338 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:42:05.338 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:42:05.338 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 22:42:05.338 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:42:05.338 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 22:42:05.348 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:42:05.348 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:42:05.348 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:42:05.358 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 22:42:05.358 -07 000000541 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 22:42:05.358 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 22:42:05.358 -07 000000459 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 22:42:05.358 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 457 457 220 220 28251 150\n [Camera]
17-03-17 22:42:05.558 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:42:06.008 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 649
17-03-17 22:42:06.008 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 649
17-03-17 22:42:06.018 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:42:06.018 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 649
17-03-17 22:42:06.018 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 649
17-03-17 22:42:06.018 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:42:06.028 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:42:06.028 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-17 22:42:06.028 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:42:06.028 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) start.
17-03-17 22:42:06.208 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28251 842
17-03-17 22:42:06.358 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP turning grn on 992
17-03-17 22:42:06.398 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) end. Duration was 368 ms.
17-03-17 22:42:06.398 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 369 ms.
17-03-17 22:42:06.398 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:42:06.398 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 373 ms.
17-03-17 22:42:06.398 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 374 ms.
17-03-17 22:42:06.398 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:42:06.398 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:42:06.398 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:42:06.408 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 22:42:06.408 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 22:42:06.578 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1212
17-03-17 22:42:06.578 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1212
17-03-17 22:42:06.578 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:42:06.688 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1212
17-03-17 22:42:06.688 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1212
17-03-17 22:42:06.698 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:42:06.698 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:42:06.698 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1439795928, 0x0, 418435064) start.
17-03-17 22:42:06.698 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:42:06.698 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 656674232, 0x0, 391868352) start.
17-03-17 22:42:06.768 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP 1405
17-03-17 22:42:06.768 -07 000000541 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:42:06.768 -07 000000610 INF: FPGA: 'CAMDBLSNAP 457 457 220 220 28251 150' command took 2 ms to send, 1404 ms to get response, and 1411 ms overall
17-03-17 22:42:06.768 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 22:42:06.768 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.34912109375, Z-Position -0.128520646704022. ------
17-03-17 22:42:06.768 -07 000000593 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:42:06.768 -07 000000608 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.13511 mm
17-03-17 22:42:06.768 -07 000000608 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:42:06.778 -07 000000458 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-17 22:42:06.778 -07 000000458 INF: Y Motor: Moving to 73.1926 mm, started at 72.3491 mm, delta = 0.8435 mm
17-03-17 22:42:06.778 -07 000000541 INF: Z Motor: Entering MoveAbsStepped (DAC = 29515, sync = True, waitForSettling = False)
17-03-17 22:42:06.778 -07 000000541 INF: Z Motor: Moving to -0.135111 mm, started at -0.128521 mm, distance = -6.59 um
17-03-17 22:42:06.778 -07 000000415 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:42:06.778 -07 000000593 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 3 ms to get response, and 4 ms overall
17-03-17 22:42:06.778 -07 000000541 INF: FPGA: Xmit ZDACW 29515\n [Z Motor]
17-03-17 22:42:06.778 -07 000000415 INF: FPGA: Recv ZDACW
17-03-17 22:42:06.788 -07 000000541 INF: FPGA: 'ZDACW 29515' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:42:06.788 -07 000000458 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:42:06.788 -07 000000462 INF: FPGA: Recv YRDPOS 148172
17-03-17 22:42:06.798 -07 000000458 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-17 22:42:06.798 -07 000000458 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:42:06.798 -07 000000593 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:42:06.798 -07 000000458 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:42:06.798 -07 000000458 INF: Y Motor: Moving 1349 steps-28
17-03-17 22:42:06.808 -07 000000541 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:42:06.808 -07 000000512 INF: FPGA: Recv ZDACR 29515
17-03-17 22:42:06.818 -07 000000458 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:42:06.818 -07 000000541 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:42:06.818 -07 000000541 INF: Z Motor: MoveAbsStepped took 37 ms (did NOT wait for settling yet))
17-03-17 22:42:06.998 -07 000000623 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:42:06.998 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 65. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1042, R2=1070, Total=2112. Warn if over 250 bubbles per interval.
17-03-17 22:42:06.998 -07 000000576 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:42:06.998 -07 000000593 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 221 ms overall
17-03-17 22:42:07.098 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 656674232, 0x0, 391868352) end. Duration was 399 ms.
17-03-17 22:42:07.098 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 22:42:07.098 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:42:07.098 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1439795928, 0x0, 418435064) end. Duration was 400 ms.
17-03-17 22:42:07.098 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 22:42:07.098 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:42:07.098 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:42:07.098 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 523 ms.
17-03-17 22:42:07.098 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:42:07.108 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-17 22:42:07.188 -07 000000462 INF: FPGA: Recv YMVTILE
17-03-17 22:42:07.188 -07 000000458 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 392 ms overall
17-03-17 22:42:07.228 -07 000000458 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:42:07.238 -07 000000502 INF: FPGA: Recv YRDPOS 149864
17-03-17 22:42:07.248 -07 000000458 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:42:07.248 -07 000000458 INF: Y Motor: Encoder = 149864 = motor step 117081.3 = 73.1758 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:42:07.248 -07 000000458 INF: Y Motor: Position error before settling (table move) = -34 encoder counts (-0.017 mm)
17-03-17 22:42:07.248 -07 000000458 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 392 ms, distance = 0.843 mm, average velocity = 2.152 mm/sec
17-03-17 22:42:08.198 -07 000000458 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:42:08.198 -07 000000512 INF: FPGA: Recv YRDPOS 149864
17-03-17 22:42:08.208 -07 000000458 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:42:08.208 -07 000000458 INF: Y Motor: Encoder = 149864 = motor step 117081.3 = 73.1758 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:42:08.228 -07 000000458 INF: Y Motor: After move to 73.192604, error = -0.016823, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:42:08.228 -07 000000458 INF: Y Motor: Position error after settling (table move) = -34 encoder counts (-0.017 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:42:08.228 -07 000000458 INF: Y Motor: Moved to 73.1758 after 1453 ms (table move)
17-03-17 22:42:08.228 -07 000000608 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135111 mm (DAC = 29515)
17-03-17 22:42:08.228 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:42:08.238 -07 000000502 INF: FPGA: Recv ZSGSRD 30331
17-03-17 22:42:08.238 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-17 22:42:08.238 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:42:08.238 -07 000000502 INF: FPGA: Recv ZSGSRD 30317
17-03-17 22:42:08.248 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:42:08.248 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:42:08.248 -07 000000502 INF: FPGA: Recv ZSGSRD 30321
17-03-17 22:42:08.258 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:42:08.258 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:42:08.258 -07 000000541 INF: FPGA: Recv ZSGSRD 30322
17-03-17 22:42:08.268 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:42:08.268 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:42:08.268 -07 000000541 INF: FPGA: Recv ZSGSRD 30325
17-03-17 22:42:08.278 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:42:08.278 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:42:08.278 -07 000000623 INF: FPGA: Recv ZSGSRD 30323
17-03-17 22:42:08.288 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:42:08.288 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:42:08.288 -07 000000623 INF: FPGA: Recv ZSGSRD 30320
17-03-17 22:42:08.298 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:42:08.298 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:42:08.298 -07 000000623 INF: FPGA: Recv ZSGSRD 30321
17-03-17 22:42:08.308 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:42:08.308 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:42:08.308 -07 000000623 INF: FPGA: Recv ZSGSRD 30319
17-03-17 22:42:08.318 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:42:08.318 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:42:08.318 -07 000000623 INF: FPGA: Recv ZSGSRD 30317
17-03-17 22:42:08.328 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:42:08.328 -07 000000608 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:42:08.328 -07 000000623 INF: FPGA: Recv ZPIEZORD 26268
17-03-17 22:42:08.338 -07 000000608 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:42:08.338 -07 000000608 INF: Z Motor: Piezo is near 36.1 V (nominally 0 to 100 V), expect near 45.0 V, since DAC is at 4.504 V. Piezo Error = -8.9 V.
17-03-17 22:42:08.338 -07 000000608 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.1 um, Read 10 ADC samples: Avg = 30322 (-134.3 uncal um), Error = 0.8 uncal um, Median = 30321 (-134.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30317 (-134.3 uncal um), Max = 30331 (-134.4 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 22:42:08.338 -07 000000608 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30322, posNoise = 9, negNoise = 5
17-03-17 22:42:08.338 -07 000000608 INF: Z Motor: After move to -0.135111, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:42:08.338 -07 000000608 INF: Z Motor: Settle wait time = 1456 ms, measure time = 101 ms (allowed 150 ms), total time = 1557 ms
17-03-17 22:42:08.338 -07 000000608 INF: Z Motor: Waiting extra 49 ms after reading position to reach expected total of 150 ms
17-03-17 22:42:08.388 -07 000000608 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1611 ms
17-03-17 22:42:08.388 -07 000000608 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:42:08.388 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:42:08.388 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:42:08.388 -07 000000593 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:42:08.388 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:42:08.388 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:42:08.388 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:42:08.388 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 22:42:08.388 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:42:08.398 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:42:08.398 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:42:08.408 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 22:42:08.408 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-17 22:42:08.408 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:42:08.458 -07 000000623 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:42:08.658 -07 000000623 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:42:08.658 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:42:08.658 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:42:08.658 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 22:42:08.698 -07 000000608 INF: FPGA: Recv @CAMSNAP 282
17-03-17 22:42:08.698 -07 000000576 INF: FPGA: Recv CAMSNAP
17-03-17 22:42:08.698 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 284 ms to get response, and 287 ms overall
17-03-17 22:42:08.768 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 22:42:08.768 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:42:08.778 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:42:08.778 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 22:42:08.798 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:42:08.798 -07 000000512 INF: Autofocus start
17-03-17 22:42:08.798 -07 000000512 INF: MeasureProfile start
17-03-17 22:42:08.808 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:42:08.808 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:42:08.808 -07 000000502 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:42:08.828 -07 000000512 INF: MeasureProfile done
17-03-17 22:42:08.828 -07 000000512 INF: X=0  Z correction [um]=-0.02394831
17-03-17 22:42:08.828 -07 000000512 INF: Autofocus finished
17-03-17 22:42:09.008 -07 000000608 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:42:09.008 -07 000000502 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 197 ms to get response, and 206 ms overall
17-03-17 22:42:09.018 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.17578125, Z-position -0.135118312573611. ----------
17-03-17 22:42:09.018 -07 000000610 INF: Cycle	66	Tile	17	Exposure Settings		A	457	G	220	T	220	C	457
17-03-17 22:42:09.018 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28023, sync = True, waitForSettling = True)
17-03-17 22:42:09.018 -07 000000610 INF: Z Motor: Moving to -0.128281 mm, started at -0.135118 mm, distance = 6.84 um
17-03-17 22:42:09.018 -07 000000610 INF: FPGA: Xmit ZDACW 28023\n [Z Motor]
17-03-17 22:42:09.028 -07 000000502 INF: FPGA: Recv ZDACW
17-03-17 22:42:09.028 -07 000000610 INF: FPGA: 'ZDACW 28023' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 22:42:09.028 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:42:09.028 -07 000000415 INF: FPGA: Recv ZDACR 28023
17-03-17 22:42:09.038 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:42:09.038 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:42:09.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:42:09.188 -07 000000502 INF: FPGA: Recv ZSGSRD 29264
17-03-17 22:42:09.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:42:09.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:42:09.198 -07 000000512 INF: FPGA: Recv ZSGSRD 29262
17-03-17 22:42:09.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:42:09.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:42:09.208 -07 000000502 INF: FPGA: Recv ZSGSRD 29260
17-03-17 22:42:09.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:42:09.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:42:09.218 -07 000000541 INF: FPGA: Recv ZSGSRD 29254
17-03-17 22:42:09.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:42:09.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:42:09.228 -07 000000512 INF: FPGA: Recv ZSGSRD 29261
17-03-17 22:42:09.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:42:09.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:42:09.238 -07 000000502 INF: FPGA: Recv ZSGSRD 29258
17-03-17 22:42:09.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:42:09.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:42:09.248 -07 000000512 INF: FPGA: Recv ZSGSRD 29262
17-03-17 22:42:09.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:42:09.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:42:09.258 -07 000000502 INF: FPGA: Recv ZSGSRD 29258
17-03-17 22:42:09.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:42:09.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:42:09.268 -07 000000415 INF: FPGA: Recv ZSGSRD 29257
17-03-17 22:42:09.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:42:09.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:42:09.278 -07 000000512 INF: FPGA: Recv ZSGSRD 29262
17-03-17 22:42:09.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:42:09.288 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:42:09.288 -07 000000438 INF: FPGA: Recv ZPIEZORD 24889
17-03-17 22:42:09.298 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:42:09.298 -07 000000610 INF: Z Motor: Piezo is near 33.2 V (nominally 0 to 100 V), expect near 42.8 V, since DAC is at 4.276 V. Piezo Error = -9.6 V.
17-03-17 22:42:09.298 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.3 um, Read 10 ADC samples: Avg = 29260 (-127.5 uncal um), Error = 0.8 uncal um, Median = 29260 (-127.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29254 (-127.5 uncal um), Max = 29264 (-127.5 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 22:42:09.298 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29260, posNoise = 4, negNoise = 6
17-03-17 22:42:09.298 -07 000000610 INF: Z Motor: After move to -0.128281, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:42:09.298 -07 000000610 INF: Z Motor: MoveAbsStepped took 273 ms)
17-03-17 22:42:09.298 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:42:09.298 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:42:09.298 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:42:09.298 -07 000000541 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:42:09.298 -07 000000459 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:42:09.298 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:42:09.298 -07 000000458 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:42:09.298 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:42:09.298 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:42:09.298 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:42:09.298 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:42:09.298 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:42:09.308 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:42:09.308 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:42:09.308 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:42:09.308 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:42:09.318 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 22:42:09.318 -07 000000458 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 22:42:09.318 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 22:42:09.318 -07 000000459 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 22:42:09.318 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 457 457 220 220 28199 150\n [Camera]
17-03-17 22:42:09.518 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:42:09.978 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 649
17-03-17 22:42:09.978 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 649
17-03-17 22:42:09.978 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:42:09.978 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:42:09.978 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1475218192, 0x0, 391868352) start.
17-03-17 22:42:09.978 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 649
17-03-17 22:42:09.978 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 649
17-03-17 22:42:09.978 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:42:09.978 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:42:09.978 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-17 22:42:10.068 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 66, FrontChillerTemperature: 4.024884,
17-03-17 22:42:10.168 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28199 842
17-03-17 22:42:10.318 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning grn on 992
17-03-17 22:42:10.348 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 371 ms.
17-03-17 22:42:10.348 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-17 22:42:10.348 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:42:10.348 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:42:10.358 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1475218192, 0x0, 391868352) end. Duration was 378 ms.
17-03-17 22:42:10.358 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-17 22:42:10.358 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:42:10.358 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:42:10.358 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 22:42:10.358 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-17 22:42:10.538 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1212
17-03-17 22:42:10.538 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1212
17-03-17 22:42:10.538 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:42:10.538 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1212
17-03-17 22:42:10.538 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:42:10.538 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1212
17-03-17 22:42:10.538 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start.
17-03-17 22:42:10.538 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:42:10.538 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:42:10.538 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) start.
17-03-17 22:42:10.728 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP 1405
17-03-17 22:42:10.728 -07 000000502 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:42:10.728 -07 000000610 INF: FPGA: 'CAMDBLSNAP 457 457 220 220 28199 150' command took 2 ms to send, 1405 ms to get response, and 1412 ms overall
17-03-17 22:42:10.728 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 22:42:10.728 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.17578125, Z-Position -0.128295799279061. ------
17-03-17 22:42:10.728 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:42:10.738 -07 000000512 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.13464 mm
17-03-17 22:42:10.738 -07 000000512 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:42:10.948 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) end. Duration was 403 ms.
17-03-17 22:42:10.948 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-17 22:42:10.948 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:42:10.948 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 405 ms.
17-03-17 22:42:10.948 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 22:42:10.948 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:42:10.948 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 22:42:10.948 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 22:42:10.948 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 414 ms.
17-03-17 22:42:10.958 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 417 ms.
17-03-17 22:42:10.958 -07 000000623 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:42:10.958 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 218 ms to get response, and 228 ms overall
17-03-17 22:42:10.958 -07 000000502 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:42:10.958 -07 000000623 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-17 22:42:10.958 -07 000000623 INF: Y Motor: Moving to 74.0226 mm, started at 73.1758 mm, delta = 0.8468 mm
17-03-17 22:42:10.968 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:42:10.968 -07 000000438 INF: FPGA: Recv YRDPOS 149864
17-03-17 22:42:10.968 -07 000000478 INF: Z Motor: Entering MoveAbsStepped (DAC = 29411, sync = True, waitForSettling = False)
17-03-17 22:42:10.968 -07 000000478 INF: Z Motor: Moving to -0.134635 mm, started at -0.128296 mm, distance = -6.34 um
17-03-17 22:42:10.978 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:42:10.978 -07 000000478 INF: FPGA: Xmit ZDACW 29411\n [Z Motor]
17-03-17 22:42:10.978 -07 000000623 INF: Y Motor: Encoder = 149864 = motor step 117081.3 = 73.1758 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:42:10.978 -07 000000623 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:42:10.978 -07 000000623 INF: Y Motor: Moving 1355 steps-34
17-03-17 22:42:10.978 -07 000000569 INF: FPGA: Recv ZDACW
17-03-17 22:42:10.988 -07 000000478 INF: FPGA: 'ZDACW 29411' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 22:42:10.988 -07 000000478 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:42:10.988 -07 000000569 INF: FPGA: Recv ZDACR 29411
17-03-17 22:42:10.998 -07 000000478 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:42:10.998 -07 000000478 INF: Z Motor: MoveAbsStepped took 25 ms (did NOT wait for settling yet))
17-03-17 22:42:10.998 -07 000000623 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:42:11.168 -07 000000478 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:42:11.168 -07 000000502 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 201 ms to get response, and 202 ms overall
17-03-17 22:42:11.368 -07 000000415 INF: FPGA: Recv YMVTILE
17-03-17 22:42:11.368 -07 000000623 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 398 ms overall
17-03-17 22:42:11.408 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:42:11.408 -07 000000438 INF: FPGA: Recv YRDPOS 151568
17-03-17 22:42:11.418 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:42:11.418 -07 000000623 INF: Y Motor: Encoder = 151568 = motor step 118412.5 = 74.0078 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:42:11.418 -07 000000623 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-17 22:42:11.418 -07 000000623 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.847 mm, average velocity = 2.128 mm/sec
17-03-17 22:42:11.998 -07 000000541 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:42:11.998 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 65. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1042, R2=1070, Total=2112. Warn if over 250 bubbles per interval.
17-03-17 22:42:12.368 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:42:12.368 -07 000000415 INF: FPGA: Recv YRDPOS 151568
17-03-17 22:42:12.378 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:42:12.378 -07 000000623 INF: Y Motor: Encoder = 151568 = motor step 118412.5 = 74.0078 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:42:12.388 -07 000000623 INF: Y Motor: After move to 74.022606, error = -0.014793, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:42:12.388 -07 000000623 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:42:12.388 -07 000000623 INF: Y Motor: Moved to 74.0078 after 1429 ms (table move)
17-03-17 22:42:12.398 -07 000000512 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134635 mm (DAC = 29411)
17-03-17 22:42:12.398 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:42:12.398 -07 000000541 INF: FPGA: Recv ZSGSRD 30254
17-03-17 22:42:12.408 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 22:42:12.408 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:42:12.408 -07 000000623 INF: FPGA: Recv ZSGSRD 30255
17-03-17 22:42:12.418 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:42:12.418 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:42:12.418 -07 000000569 INF: FPGA: Recv ZSGSRD 30251
17-03-17 22:42:12.428 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:42:12.428 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:42:12.428 -07 000000623 INF: FPGA: Recv ZSGSRD 30250
17-03-17 22:42:12.438 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:42:12.438 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:42:12.438 -07 000000569 INF: FPGA: Recv ZSGSRD 30246
17-03-17 22:42:12.448 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:42:12.448 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:42:12.448 -07 000000438 INF: FPGA: Recv ZSGSRD 30243
17-03-17 22:42:12.458 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:42:12.458 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:42:12.458 -07 000000458 INF: FPGA: Recv ZSGSRD 30248
17-03-17 22:42:12.468 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:42:12.468 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:42:12.468 -07 000000608 INF: FPGA: Recv ZSGSRD 30245
17-03-17 22:42:12.478 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:42:12.478 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:42:12.478 -07 000000438 INF: FPGA: Recv ZSGSRD 30247
17-03-17 22:42:12.488 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:42:12.488 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:42:12.488 -07 000000458 INF: FPGA: Recv ZSGSRD 30246
17-03-17 22:42:12.498 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:42:12.498 -07 000000512 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:42:12.498 -07 000000438 INF: FPGA: Recv ZPIEZORD 26212
17-03-17 22:42:12.508 -07 000000512 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:42:12.508 -07 000000512 INF: Z Motor: Piezo is near 36.0 V (nominally 0 to 100 V), expect near 44.9 V, since DAC is at 4.488 V. Piezo Error = -8.9 V.
17-03-17 22:42:12.508 -07 000000512 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.6 um, Read 10 ADC samples: Avg = 30248 (-133.9 uncal um), Error = 0.8 uncal um, Median = 30248 (-133.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30243 (-133.8 uncal um), Max = 30255 (-133.9 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 22:42:12.508 -07 000000512 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30248, posNoise = 7, negNoise = 5
17-03-17 22:42:12.508 -07 000000512 INF: Z Motor: After move to -0.134635, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:42:12.508 -07 000000512 INF: Z Motor: Settle wait time = 1429 ms, measure time = 107 ms (allowed 150 ms), total time = 1536 ms
17-03-17 22:42:12.508 -07 000000512 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 22:42:12.558 -07 000000512 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1819 ms
17-03-17 22:42:12.558 -07 000000512 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:42:12.558 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:42:12.558 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:42:12.558 -07 000000623 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:42:12.558 -07 000000486 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:42:12.558 -07 000000541 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:42:12.558 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:42:12.558 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:42:12.558 -07 000000541 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:42:12.568 -07 000000541 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:42:12.568 -07 000000541 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:42:12.578 -07 000000541 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 22:42:12.578 -07 000000541 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 22:42:12.578 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:42:12.628 -07 000000501 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:42:12.828 -07 000000459 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:42:12.828 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:42:12.828 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:42:12.938 -07 000000501 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:42:12.938 -07 000000501 INF: FPGA: Recv CAMSNAP
17-03-17 22:42:12.938 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 358 ms to get response, and 363 ms overall
17-03-17 22:42:12.938 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1510640456, 0x0, 559484976) start.
17-03-17 22:42:13.058 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1510640456, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 22:42:13.058 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:42:13.058 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:42:13.058 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 234 ms.
17-03-17 22:42:13.138 -07 000000593 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:42:13.138 -07 000000459 INF: Autofocus start
17-03-17 22:42:13.138 -07 000000459 INF: MeasureProfile start
17-03-17 22:42:13.138 -07 000000478 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:42:13.148 -07 000000593 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 22:42:13.148 -07 000000593 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:42:13.148 -07 000000459 INF: MeasureProfile done
17-03-17 22:42:13.148 -07 000000459 INF: X=23  Z correction [um]=0.08669062
17-03-17 22:42:13.148 -07 000000459 INF: Autofocus finished
17-03-17 22:42:13.348 -07 000000541 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:42:13.348 -07 000000593 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 205 ms overall
17-03-17 22:42:13.358 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.0078125, Z-position -0.13464292087512. ----------
17-03-17 22:42:13.358 -07 000000610 INF: Cycle	66	Tile	18	Exposure Settings		A	457	G	220	T	220	C	457
17-03-17 22:42:13.358 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27943, sync = True, waitForSettling = True)
17-03-17 22:42:13.358 -07 000000610 INF: Z Motor: Moving to -0.127915 mm, started at -0.134643 mm, distance = 6.73 um
17-03-17 22:42:13.358 -07 000000610 INF: FPGA: Xmit ZDACW 27943\n [Z Motor]
17-03-17 22:42:13.358 -07 000000459 INF: FPGA: Recv ZDACW
17-03-17 22:42:13.368 -07 000000610 INF: FPGA: 'ZDACW 27943' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 22:42:13.368 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:42:13.368 -07 000000608 INF: FPGA: Recv ZDACR 27943
17-03-17 22:42:13.378 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:42:13.378 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:42:13.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:42:13.528 -07 000000512 INF: FPGA: Recv ZSGSRD 29202
17-03-17 22:42:13.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:42:13.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:42:13.538 -07 000000502 INF: FPGA: Recv ZSGSRD 29201
17-03-17 22:42:13.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:42:13.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:42:13.548 -07 000000459 INF: FPGA: Recv ZSGSRD 29205
17-03-17 22:42:13.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:42:13.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:42:13.558 -07 000000458 INF: FPGA: Recv ZSGSRD 29198
17-03-17 22:42:13.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:42:13.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:42:13.568 -07 000000512 INF: FPGA: Recv ZSGSRD 29201
17-03-17 22:42:13.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:42:13.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:42:13.578 -07 000000569 INF: FPGA: Recv ZSGSRD 29204
17-03-17 22:42:13.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:42:13.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:42:13.588 -07 000000541 INF: FPGA: Recv ZSGSRD 29207
17-03-17 22:42:13.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:42:13.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:42:13.598 -07 000000458 INF: FPGA: Recv ZSGSRD 29203
17-03-17 22:42:13.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:42:13.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:42:13.608 -07 000000502 INF: FPGA: Recv ZSGSRD 29194
17-03-17 22:42:13.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:42:13.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:42:13.618 -07 000000501 INF: FPGA: Recv ZSGSRD 29198
17-03-17 22:42:13.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:42:13.628 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:42:13.628 -07 000000593 INF: FPGA: Recv ZPIEZORD 24827
17-03-17 22:42:13.638 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:42:13.638 -07 000000610 INF: Z Motor: Piezo is near 33.0 V (nominally 0 to 100 V), expect near 42.6 V, since DAC is at 4.264 V. Piezo Error = -9.6 V.
17-03-17 22:42:13.638 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.9 um, Read 10 ADC samples: Avg = 29201 (-127.1 uncal um), Error = 0.8 uncal um, Median = 29202 (-127.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29194 (-127.1 uncal um), Max = 29207 (-127.2 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 22:42:13.638 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29201, posNoise = 6, negNoise = 7
17-03-17 22:42:13.638 -07 000000610 INF: Z Motor: After move to -0.127915, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:42:13.638 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 22:42:13.638 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:42:13.638 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:42:13.638 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:42:13.638 -07 000000415 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:42:13.638 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:42:13.638 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:42:13.638 -07 000000458 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:42:13.638 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:42:13.638 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:42:13.638 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:42:13.638 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:42:13.638 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:42:13.638 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 22:42:13.638 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:42:13.648 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:42:13.648 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:42:13.648 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 22:42:13.648 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 22:42:13.648 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 22:42:13.648 -07 000000458 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 22:42:13.658 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 457 457 220 220 28119 150\n [Camera]
17-03-17 22:42:13.858 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:42:14.318 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 652
17-03-17 22:42:14.318 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 652
17-03-17 22:42:14.318 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:42:14.318 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 652
17-03-17 22:42:14.318 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 652
17-03-17 22:42:14.318 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:42:14.318 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:42:14.318 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 583729424, 0x0, 391868352) start.
17-03-17 22:42:14.328 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:42:14.328 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 1439795928, 0x0, 418435064) start.
17-03-17 22:42:14.508 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28119 842
17-03-17 22:42:14.658 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP turning grn on 992
17-03-17 22:42:14.698 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 583729424, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 22:42:14.698 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-17 22:42:14.698 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:42:14.698 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:42:14.698 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 22:42:14.698 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 1439795928, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 22:42:14.698 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-17 22:42:14.698 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:42:14.708 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:42:14.708 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 22:42:14.878 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1212
17-03-17 22:42:14.878 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1212
17-03-17 22:42:14.878 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:42:14.878 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1212
17-03-17 22:42:14.878 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1212
17-03-17 22:42:14.878 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:42:14.878 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:42:14.878 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 656674232, 0x0, 418435064) start.
17-03-17 22:42:14.998 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:42:14.998 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1475218192, 0x0, 391868352) start.
17-03-17 22:42:15.068 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP 1405
17-03-17 22:42:15.068 -07 000000478 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:42:15.068 -07 000000610 INF: FPGA: 'CAMDBLSNAP 457 457 220 220 28119 150' command took 2 ms to send, 1403 ms to get response, and 1412 ms overall
17-03-17 22:42:15.068 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 22:42:15.068 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.0078125, Z-Position -0.127916770762697. ------
17-03-17 22:42:15.068 -07 000000478 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:42:15.278 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 656674232, 0x0, 418435064) end. Duration was 396 ms.
17-03-17 22:42:15.278 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 22:42:15.278 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:42:15.278 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:42:15.288 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-17 22:42:15.298 -07 000000541 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.13435 mm
17-03-17 22:42:15.298 -07 000000541 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:42:15.398 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1475218192, 0x0, 391868352) end. Duration was 402 ms.
17-03-17 22:42:15.398 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 22:42:15.398 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:42:15.398 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:42:15.398 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 524 ms.
17-03-17 22:42:15.408 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:42:15.408 -07 000000478 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 336 ms to get response, and 338 ms overall
17-03-17 22:42:15.408 -07 000000478 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:42:15.408 -07 000000502 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-17 22:42:15.408 -07 000000502 INF: Y Motor: Moving to 74.8526 mm, started at 74.0078 mm, delta = 0.8448 mm
17-03-17 22:42:15.418 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:42:16.228 -07 000000576 INF: Z Motor: Entering MoveAbsStepped (DAC = 29349, sync = True, waitForSettling = False)
17-03-17 22:42:16.228 -07 000000576 INF: Z Motor: Moving to -0.134351 mm, started at -0.127917 mm, distance = -6.43 um
17-03-17 22:42:16.228 -07 000000576 INF: FPGA: Xmit ZDACW 29349\n [Z Motor]
17-03-17 22:42:17.228 -07 000000462 INF: FPGA: Recv YRDPOS 151568
17-03-17 22:42:17.228 -07 000000462 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:42:17.228 -07 000000478 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 1810 ms to get response, and 1814 ms overall
17-03-17 22:42:17.228 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1800 ms to get response, and 1811 ms overall
17-03-17 22:42:17.228 -07 000000462 INF: FPGA: Recv ZDACW
17-03-17 22:42:17.228 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:42:17.228 -07 000000576 INF: FPGA: 'ZDACW 29349' command took 0 ms to send, 991 ms to get response, and 999 ms overall
17-03-17 22:42:17.228 -07 000000502 INF: Y Motor: Encoder = 151568 = motor step 118412.5 = 74.0078 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:42:17.228 -07 000000502 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:42:17.228 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 65. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1042, R2=1070, Total=2112. Warn if over 250 bubbles per interval.
17-03-17 22:42:17.228 -07 000000576 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:42:17.228 -07 000000502 INF: Y Motor: Moving 1352 steps-30
17-03-17 22:42:17.228 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 66, FrontChillerTemperature: 4.019446,
17-03-17 22:42:17.228 -07 000000462 INF: FPGA: Recv ZDACR 29349
17-03-17 22:42:17.238 -07 000000576 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:42:17.238 -07 000000576 INF: Z Motor: MoveAbsStepped took 1008 ms (did NOT wait for settling yet))
17-03-17 22:42:17.248 -07 000000502 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:42:17.618 -07 000000462 INF: FPGA: Recv YMVTILE
17-03-17 22:42:17.618 -07 000000502 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-17 22:42:17.648 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:42:17.648 -07 000000462 INF: FPGA: Recv YRDPOS 153255
17-03-17 22:42:17.658 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 22:42:17.658 -07 000000502 INF: Y Motor: Encoder = 153255 = motor step 119730.5 = 74.8315 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:42:17.658 -07 000000502 INF: Y Motor: Position error before settling (table move) = -43 encoder counts (-0.021 mm)
17-03-17 22:42:17.658 -07 000000502 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.845 mm, average velocity = 2.139 mm/sec
17-03-17 22:42:18.608 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:42:18.608 -07 000000438 INF: FPGA: Recv YRDPOS 153255
17-03-17 22:42:18.618 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:42:18.618 -07 000000502 INF: Y Motor: Encoder = 153255 = motor step 119730.5 = 74.8315 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:42:18.628 -07 000000502 INF: Y Motor: After move to 74.852608, error = -0.021065, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:42:18.628 -07 000000502 INF: Y Motor: Position error after settling (table move) = -43 encoder counts (-0.021 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:42:18.628 -07 000000502 INF: Y Motor: Moved to 74.8315 after 3218 ms (table move)
17-03-17 22:42:18.638 -07 000000541 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134351 mm (DAC = 29349)
17-03-17 22:42:18.638 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:42:18.638 -07 000000438 INF: FPGA: Recv ZSGSRD 30203
17-03-17 22:42:18.648 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:42:18.648 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:42:18.648 -07 000000576 INF: FPGA: Recv ZSGSRD 30204
17-03-17 22:42:18.658 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:42:18.658 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:42:18.658 -07 000000438 INF: FPGA: Recv ZSGSRD 30198
17-03-17 22:42:18.668 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:42:18.668 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:42:18.668 -07 000000569 INF: FPGA: Recv ZSGSRD 30199
17-03-17 22:42:18.678 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:42:18.678 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:42:18.678 -07 000000462 INF: FPGA: Recv ZSGSRD 30205
17-03-17 22:42:18.688 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:42:18.688 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:42:18.688 -07 000000438 INF: FPGA: Recv ZSGSRD 30207
17-03-17 22:42:18.698 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:42:18.698 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:42:18.698 -07 000000576 INF: FPGA: Recv ZSGSRD 30197
17-03-17 22:42:18.708 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:42:18.708 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:42:18.708 -07 000000462 INF: FPGA: Recv ZSGSRD 30204
17-03-17 22:42:18.718 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:42:18.718 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:42:18.718 -07 000000576 INF: FPGA: Recv ZSGSRD 30206
17-03-17 22:42:18.728 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:42:18.728 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:42:18.728 -07 000000415 INF: FPGA: Recv ZSGSRD 30203
17-03-17 22:42:18.738 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:42:18.738 -07 000000541 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:42:18.738 -07 000000438 INF: FPGA: Recv ZPIEZORD 26193
17-03-17 22:42:18.748 -07 000000541 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:42:18.748 -07 000000541 INF: Z Motor: Piezo is near 36.0 V (nominally 0 to 100 V), expect near 44.8 V, since DAC is at 4.478 V. Piezo Error = -8.8 V.
17-03-17 22:42:18.748 -07 000000541 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.4 um, Read 10 ADC samples: Avg = 30203 (-133.6 uncal um), Error = 0.8 uncal um, Median = 30204 (-133.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 30197 (-133.5 uncal um), Max = 30207 (-133.6 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 22:42:18.748 -07 000000541 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30203, posNoise = 4, negNoise = 6
17-03-17 22:42:18.748 -07 000000541 INF: Z Motor: After move to -0.134351, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:42:18.748 -07 000000541 INF: Z Motor: Settle wait time = 2409 ms, measure time = 109 ms (allowed 150 ms), total time = 2518 ms
17-03-17 22:42:18.748 -07 000000541 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-17 22:42:18.798 -07 000000541 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 3499 ms
17-03-17 22:42:18.798 -07 000000541 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:42:18.798 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:42:18.798 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:42:18.798 -07 000000541 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:42:18.798 -07 000000415 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:42:18.798 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:42:18.798 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:42:18.798 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:42:18.798 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:42:18.808 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:42:18.808 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:42:18.818 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 22:42:18.818 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 22:42:18.818 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:42:18.868 -07 000000576 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:42:19.068 -07 000000569 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:42:19.068 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:42:19.068 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:42:19.068 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 596199184, 0x0, 559484976) start.
17-03-17 22:42:19.108 -07 000000502 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:42:19.108 -07 000000478 INF: FPGA: Recv CAMSNAP
17-03-17 22:42:19.108 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 285 ms overall
17-03-17 22:42:19.198 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 596199184, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 22:42:19.198 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:42:19.198 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:42:19.198 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 22:42:19.208 -07 000000462 INF: Autofocus start
17-03-17 22:42:19.208 -07 000000478 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:42:19.208 -07 000000462 INF: MeasureProfile start
17-03-17 22:42:19.218 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:42:19.218 -07 000000478 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:42:19.218 -07 000000478 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:42:19.218 -07 000000462 INF: MeasureProfile done
17-03-17 22:42:19.218 -07 000000462 INF: X=16  Z correction [um]=0.0530179
17-03-17 22:42:19.218 -07 000000462 INF: Autofocus finished
17-03-17 22:42:19.418 -07 000000462 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:42:19.418 -07 000000478 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:42:19.418 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83154296875, Z-position -0.134353831328741. ----------
17-03-17 22:42:19.418 -07 000000610 INF: Cycle	66	Tile	19	Exposure Settings		A	457	G	220	T	220	C	457
17-03-17 22:42:19.428 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27873, sync = True, waitForSettling = True)
17-03-17 22:42:19.428 -07 000000610 INF: Z Motor: Moving to -0.127594 mm, started at -0.134354 mm, distance = 6.76 um
17-03-17 22:42:19.428 -07 000000610 INF: FPGA: Xmit ZDACW 27873\n [Z Motor]
17-03-17 22:42:19.428 -07 000000541 INF: FPGA: Recv ZDACW
17-03-17 22:42:19.438 -07 000000610 INF: FPGA: 'ZDACW 27873' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:42:19.438 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:42:19.438 -07 000000415 INF: FPGA: Recv ZDACR 27873
17-03-17 22:42:19.448 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:42:19.448 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:42:19.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:42:19.598 -07 000000576 INF: FPGA: Recv ZSGSRD 29148
17-03-17 22:42:19.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:42:19.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:42:19.608 -07 000000415 INF: FPGA: Recv ZSGSRD 29151
17-03-17 22:42:19.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:42:19.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:42:19.618 -07 000000541 INF: FPGA: Recv ZSGSRD 29156
17-03-17 22:42:19.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:42:19.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:42:19.628 -07 000000462 INF: FPGA: Recv ZSGSRD 29149
17-03-17 22:42:19.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:42:19.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:42:19.638 -07 000000438 INF: FPGA: Recv ZSGSRD 29147
17-03-17 22:42:19.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:42:19.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:42:19.648 -07 000000415 INF: FPGA: Recv ZSGSRD 29151
17-03-17 22:42:19.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:42:19.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:42:19.658 -07 000000569 INF: FPGA: Recv ZSGSRD 29159
17-03-17 22:42:19.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:42:19.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:42:19.668 -07 000000462 INF: FPGA: Recv ZSGSRD 29154
17-03-17 22:42:19.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:42:19.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:42:19.678 -07 000000438 INF: FPGA: Recv ZSGSRD 29148
17-03-17 22:42:19.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:42:19.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:42:19.688 -07 000000502 INF: FPGA: Recv ZSGSRD 29151
17-03-17 22:42:19.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:42:19.698 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:42:19.698 -07 000000569 INF: FPGA: Recv ZPIEZORD 24779
17-03-17 22:42:19.708 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:42:19.708 -07 000000610 INF: Z Motor: Piezo is near 32.9 V (nominally 0 to 100 V), expect near 42.5 V, since DAC is at 4.253 V. Piezo Error = -9.6 V.
17-03-17 22:42:19.708 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.6 um, Read 10 ADC samples: Avg = 29151 (-126.8 uncal um), Error = 0.8 uncal um, Median = 29151 (-126.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29147 (-126.8 uncal um), Max = 29159 (-126.9 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 22:42:19.708 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29151, posNoise = 8, negNoise = 4
17-03-17 22:42:19.708 -07 000000610 INF: Z Motor: After move to -0.127594, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:42:19.708 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 22:42:19.708 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:42:19.708 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:42:19.708 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:42:19.708 -07 000000415 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:42:19.708 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:42:19.708 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:42:19.708 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:42:19.708 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:42:19.708 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:42:19.708 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:42:19.708 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:42:19.708 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:42:19.718 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:42:19.718 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:42:19.718 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:42:19.718 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:42:19.728 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 22:42:19.728 -07 000000415 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 22:42:19.728 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 22:42:19.728 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 22:42:19.728 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 457 457 220 220 28050 150\n [Camera]
17-03-17 22:42:19.928 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:42:20.388 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 649
17-03-17 22:42:20.388 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 649
17-03-17 22:42:20.388 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:42:20.388 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 649
17-03-17 22:42:20.388 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 649
17-03-17 22:42:20.398 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:42:20.398 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:42:20.398 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-17 22:42:20.398 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:42:20.398 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 1439795928, 0x0, 391868352) start.
17-03-17 22:42:20.578 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28050 842
17-03-17 22:42:20.728 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning grn on 992
17-03-17 22:42:20.798 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 1439795928, 0x0, 391868352) end. Duration was 397 ms.
17-03-17 22:42:20.798 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 22:42:20.798 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:42:20.798 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 399 ms.
17-03-17 22:42:20.798 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 22:42:20.798 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:42:20.798 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:42:20.798 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-17 22:42:20.798 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:42:20.808 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-17 22:42:20.948 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1212
17-03-17 22:42:20.948 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1212
17-03-17 22:42:20.958 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:42:20.958 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:42:20.958 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1212
17-03-17 22:42:20.958 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1212
17-03-17 22:42:20.958 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start.
17-03-17 22:42:20.958 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:42:20.958 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:42:20.958 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) start.
17-03-17 22:42:21.148 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP 1405
17-03-17 22:42:21.148 -07 000000541 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:42:21.148 -07 000000610 INF: FPGA: 'CAMDBLSNAP 457 457 220 220 28050 150' command took 2 ms to send, 1401 ms to get response, and 1411 ms overall
17-03-17 22:42:21.338 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 382 ms.
17-03-17 22:42:21.338 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 22:42:21.338 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:42:21.338 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) end. Duration was 381 ms.
17-03-17 22:42:21.338 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-17 22:42:21.338 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:42:21.338 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:42:21.338 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 22:42:21.338 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-17 22:42:21.348 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:42:21.348 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 22:42:21.388 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 41 ms.
17-03-17 22:42:21.388 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-17 22:42:21.428 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 41 ms.
17-03-17 22:42:21.438 -07 000000610 INF: Enabling Skipping AutoFocus in the next 2 cycles.
17-03-17 22:42:21.438 -07 000000610 INF: Imaging Cycle 66: ScanTilesCommand Cycle 66 time end. Duration was 168695 ms.
17-03-17 22:42:21.438 -07 000000610 INF: =================== Cycle #66 ===================
17-03-17 22:42:21.438 -07 000000610 INF: ===================  ===================
17-03-17 22:42:21.438 -07 000000593 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-17 22:42:21.438 -07 000000569 INF: FPGA: Recv EXLED1ADCR 26
17-03-17 22:42:21.448 -07 000000593 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:42:21.448 -07 000000593 INF: GreenLED: Using Green data: Photodiode ADC 26 --> 0.0 mW (old method), or 1.9 mW (new method). Difference = 1.9 mW
17-03-17 22:42:21.448 -07 000000593 INF: Predictive Diagnostic Log Cycle Entry Metrics: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 66, FrontChillerTemperature: 4.019446, FrontChillerHeatSinkTemperature: 0.168879, AmbientTemperature: 18.9019, FlowCellCompartmentTemperature: 21.99692, FlowCellTargetTemperature: 22, FlowCellHeatSinkTemperature: 18.59271, GreenLEDSensorTemperature: 26.42044, PhotodiodePowerAdcGreen: 26, PhotodiodePowerMwGreen: 1.927049
17-03-17 22:42:21.498 -07 000000610 INF: Y-Drift Offset assigned 0.002126916.