17-03-17 22:42:21.548 -07 000000610 INF: =================== Cycle #67 ===================
17-03-17 22:42:21.548 -07 000000610 INF: Y Motor: Entering MoveAbsStepped (target = 120609 steps, sync = True, waitForSettling = True)
17-03-17 22:42:21.548 -07 000000610 INF: Y Motor: Moving to 75.3806 mm, started at 74.8315 mm, delta = 0.5490 mm
17-03-17 22:42:21.548 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:42:21.548 -07 000000502 INF: FPGA: Recv YRDPOS 153256
17-03-17 22:42:21.558 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:42:21.558 -07 000000610 INF: Y Motor: Encoder = 153256 = motor step 119731.3 = 74.8320 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:42:21.558 -07 000000610 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = 0.5280 mm (844.8 steps). UsingTableMove = False
17-03-17 22:42:21.558 -07 000000610 INF: Y Motor: Moving to 154379 encoder counts
17-03-17 22:42:21.558 -07 000000610 INF: FPGA: Xmit YMVTO 154379\n [Y Motor]
17-03-17 22:42:21.678 -07 000000478 INF: FPGA: Recv YMVTO 154377 874
17-03-17 22:42:21.678 -07 000000610 INF: FPGA: 'YMVTO 154379' command took 0 ms to send, 111 ms to get response, and 116 ms overall
17-03-17 22:42:21.678 -07 000000610 INF: Y Motor: Position error before settling = -2 encoder counts (-0.001 mm)
17-03-17 22:42:21.678 -07 000000610 INF: Y Motor: To move from 74.832 to 75.381 (0.549 mm) should take 877 steps, but required 874 steps (0.546 mm). Slippage = -0.002 mm (0.00%).
17-03-17 22:42:21.678 -07 000000610 INF: Y Motor: FPGA move command 'YMVTO 154379' took 116 ms, distance = 0.549 mm, average velocity = 4.733 mm/sec
17-03-17 22:42:21.998 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:42:21.998 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 66. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1042, R2=1070, Total=2112. Warn if over 250 bubbles per interval.
17-03-17 22:42:22.608 -07 000000478 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 67, FrontChillerTemperature: 3.990831,
17-03-17 22:42:24.678 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:42:24.678 -07 000000502 INF: FPGA: Recv YRDPOS 154382
17-03-17 22:42:24.688 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:42:24.688 -07 000000610 INF: Y Motor: Encoder = 154382 = motor step 120610.9 = 75.3818 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:42:24.708 -07 000000610 INF: Y Motor: After move to 75.380580, error = 0.001256, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:42:24.708 -07 000000610 INF: Y Motor: Position error after settling = 3 encoder counts (0.001 mm), Delta during settling = 5 counts (0.002 mm)
17-03-17 22:42:24.708 -07 000000610 INF: Y Motor: Moved to 75.3818 after 3155 ms
17-03-17 22:42:24.708 -07 000000610 INF: =================== Cycle #67, Flow Cell Temp 60° ===================
17-03-17 22:42:24.708 -07 000000610 INF: =================== Cycle #67, Flow Cell Temp 60°, FC temperature to 60° ===================
17-03-17 22:42:24.708 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 60000000\n [FlowCellTempControl]
17-03-17 22:42:24.718 -07 000000569 INF: FPGA: Recv TEC2TEMP 
17-03-17 22:42:24.718 -07 000000610 INF: FPGA: 'TEC2TEMP 0 60000000' command took 1 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 22:42:24.718 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 22:42:24.718 -07 000000502 INF: FPGA: Recv TEC2EN 
17-03-17 22:42:24.728 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:42:24.728 -07 000000610 INF: =================== Cycle #67, Flow Cell Temp 60° ===================
17-03-17 22:42:24.728 -07 000000610 INF: =================== Cycle #67 ===================
17-03-17 22:42:24.728 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 22:42:24.728 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 22:42:24.758 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-17 22:42:24.758 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 24 to 3. Moving 3 positions.
17-03-17 22:42:24.758 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 22:42:25.058 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 22:42:25.078 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-17 22:42:25.078 -07 000000610 INF: ReagentValve: Move+ from 24 to 3 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-17 22:42:25.128 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 22:42:25.148 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 22:42:25.148 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 22:42:25.248 -07 000000610 INF: =================== Cycle #67, Pumping Reagent PR2 (3) ===================
17-03-17 22:42:25.248 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-17 22:42:25.288 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:42:25.318 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 22:42:25.318 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 22:42:25.318 -07 000000610 INF: =================== Cycle #67, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 22:42:25.448 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-17 22:42:25.488 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:42:26.998 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:42:26.998 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 66. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1042, R2=1070, Total=2112. Warn if over 250 bubbles per interval.
17-03-17 22:42:27.968 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 67, FrontChillerTemperature: 3.988112,
17-03-17 22:42:28.618 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:42:28.648 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:42:29.068 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:42:29.098 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:42:29.518 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:42:29.548 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:42:29.548 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-17 22:42:29.548 -07 000000610 INF: =================== Cycle #67, Pumping Reagent PR2 (3) ===================
17-03-17 22:42:29.678 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:42:29.708 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 22:42:29.708 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 22:42:29.838 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:42:29.868 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 22:42:29.868 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 22:42:29.868 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 22:42:29.998 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 22:42:30.028 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:42:30.458 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:42:30.488 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:42:30.488 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 22:42:30.488 -07 000000610 INF: =================== Cycle #67 ===================
17-03-17 22:42:31.708 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 22:42:31.708 -07 000000610 INF: ReagentValve: Go to position 4 - PumpToFlowcell start
17-03-17 22:42:31.708 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 22:42:31.728 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 22:42:31.728 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 3 to 4. Moving 1 positions.
17-03-17 22:42:31.728 -07 000000610 INF: ReagentValve: Xmit +04\r
17-03-17 22:42:31.868 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 22:42:31.888 -07 000000610 INF: ReagentValve: Recv 00CD\r
17-03-17 22:42:31.888 -07 000000610 INF: ReagentValve: Move+ from 3 to 4 took 205 steps, expected 204. Error = 1 steps (0.5%)
17-03-17 22:42:31.938 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 22:42:31.958 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-17 22:42:31.958 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 22:42:31.998 -07 000000459 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:42:31.998 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 66. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1042, R2=1070, Total=2112. Warn if over 250 bubbles per interval.
17-03-17 22:42:32.058 -07 000000610 INF: =================== Cycle #67, Pumping Reagent CMS (4) ===================
17-03-17 22:42:32.058 -07 000000610 INF: LanePump: Pumping from 4, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 22:42:32.058 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:42:32.088 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 22:42:32.088 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 22:42:32.088 -07 000000610 INF: =================== Cycle #67, Pumping Reagent CMS (4), Aspirating port InputPort ===================
17-03-17 22:42:32.218 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 22:42:32.258 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:42:33.338 -07 000000458 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 67, FrontChillerTemperature: 3.98264,
17-03-17 22:42:33.698 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:42:33.728 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:42:34.148 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:42:34.178 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:42:34.178 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-17 22:42:34.178 -07 000000610 INF: =================== Cycle #67, Pumping Reagent CMS (4) ===================
17-03-17 22:42:34.308 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:42:34.338 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 22:42:34.338 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 22:42:34.468 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:42:34.498 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 22:42:34.498 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 22:42:34.498 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 22:42:34.628 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 22:42:34.658 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:42:35.088 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:42:35.118 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:42:35.118 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 22:42:35.118 -07 000000610 INF: =================== Cycle #67 ===================
17-03-17 22:42:36.338 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 22:42:36.338 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 22:42:36.338 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 22:42:36.358 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-17 22:42:36.358 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 4 to 3. Moving 1 positions.
17-03-17 22:42:36.358 -07 000000610 INF: ReagentValve: Xmit -03\r
17-03-17 22:42:36.508 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 22:42:36.528 -07 000000610 INF: ReagentValve: Recv 00E1\r
17-03-17 22:42:36.528 -07 000000610 INF: ReagentValve: Move- from 4 to 3 took 225 steps, expected 204. Error = 21 steps (10.3%)
17-03-17 22:42:36.578 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 22:42:36.598 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 22:42:36.598 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 22:42:36.698 -07 000000610 INF: =================== Cycle #67, Pumping Reagent PR2 (3) ===================
17-03-17 22:42:36.698 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 22:42:36.698 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:42:36.728 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 22:42:36.728 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 22:42:36.728 -07 000000610 INF: =================== Cycle #67, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 22:42:36.858 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 22:42:36.898 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:42:36.998 -07 000000458 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:42:36.998 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 66. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1042, R2=1070, Total=2112. Warn if over 250 bubbles per interval.
17-03-17 22:42:37.768 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:42:37.798 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:42:37.798 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-17 22:42:37.798 -07 000000610 INF: =================== Cycle #67, Pumping Reagent PR2 (3) ===================
17-03-17 22:42:37.928 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:42:37.958 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 22:42:37.958 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 22:42:38.088 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:42:38.118 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 22:42:38.118 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 22:42:38.118 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 22:42:38.248 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 22:42:38.278 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:42:38.708 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:42:38.718 -07 000000438 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 67, FrontChillerTemperature: 3.956714,
17-03-17 22:42:38.738 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:42:38.738 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 22:42:38.738 -07 000000610 INF: =================== Cycle #67 ===================
17-03-17 22:42:38.738 -07 000000458 INF: WaitCommand(10000) start
17-03-17 22:42:38.738 -07 000000459 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 22:42:38.738 -07 000000459 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 22:42:39.958 -07 000000459 INF: AsyncDelayTimer waited 1216ms
17-03-17 22:42:39.958 -07 000000459 INF: LanePump: Xmit /1?\r
17-03-17 22:42:39.988 -07 000000459 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 22:42:39.988 -07 000000459 INF: LanePump: Current Position of Pump is: 1110
17-03-17 22:42:40.118 -07 000000459 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 22:42:40.158 -07 000000459 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:42:41.688 -07 000000459 INF: LanePump: Xmit /1Q\r
17-03-17 22:42:41.718 -07 000000459 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:42:41.998 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:42:41.998 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 66. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1042, R2=1070, Total=2112. Warn if over 250 bubbles per interval.
17-03-17 22:42:42.138 -07 000000459 INF: LanePump: Xmit /1Q\r
17-03-17 22:42:42.168 -07 000000459 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:42:42.168 -07 000000459 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-17 22:42:42.168 -07 000000459 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 22:42:42.168 -07 000000459 INF: ===================  ===================
17-03-17 22:42:44.078 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 67, FrontChillerTemperature: 3.974486,
17-03-17 22:42:46.998 -07 000000486 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:42:46.998 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 66. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1042, R2=1070, Total=2112. Warn if over 250 bubbles per interval.
17-03-17 22:42:48.748 -07 000000458 INF: WaitCommand(10000) end
17-03-17 22:42:48.748 -07 000000610 INF: =================== Cycle #67, Pumping Reagent PR2 (3) ===================
17-03-17 22:42:48.748 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 250 µL, calling command Pumping to Flow Cell #1
17-03-17 22:42:48.748 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:42:48.788 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 22:42:48.788 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 22:42:48.788 -07 000000610 INF: =================== Cycle #67, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 22:42:48.918 -07 000000610 INF: LanePump: Xmit /1V400IP1500R\r
17-03-17 22:42:48.958 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:42:49.448 -07 000000486 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 67, FrontChillerTemperature: 4.015368,
17-03-17 22:42:51.998 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:42:51.998 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 66. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1042, R2=1070, Total=2112. Warn if over 250 bubbles per interval.
17-03-17 22:42:54.828 -07 000000458 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 67, FrontChillerTemperature: 4.014009,
17-03-17 22:42:55.088 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:42:55.118 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:42:55.538 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:42:55.568 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:42:55.988 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:42:56.018 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:42:56.438 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:42:56.468 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:42:56.888 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:42:56.918 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:42:56.918 -07 000000610 INF: LanePump: Waited 7959 ms for pump motion to complete
17-03-17 22:42:56.918 -07 000000610 INF: =================== Cycle #67, Pumping Reagent PR2 (3) ===================
17-03-17 22:42:56.998 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 1
17-03-17 22:42:56.998 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 66. Bubbles during last 5000 ms interval: R1=1, R2=1, Total=2. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1043, R2=1071, Total=2114. Warn if over 250 bubbles per interval.
17-03-17 22:42:57.048 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:42:57.078 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 22:42:57.078 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 22:42:57.208 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:42:57.238 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 22:42:57.238 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 22:42:57.238 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 22:42:57.368 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 22:42:57.398 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:42:57.828 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:42:57.858 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:42:57.858 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 22:42:57.858 -07 000000610 INF: =================== Cycle #67 ===================
17-03-17 22:42:59.078 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 22:42:59.078 -07 000000610 INF: ReagentValve: Go to position 1 - PumpToFlowcell start
17-03-17 22:42:59.078 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 22:42:59.098 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 22:42:59.098 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 1. Moving 2 positions.
17-03-17 22:42:59.098 -07 000000610 INF: ReagentValve: Xmit -01\r
17-03-17 22:42:59.308 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 22:42:59.328 -07 000000610 INF: ReagentValve: Recv 0198\r
17-03-17 22:42:59.328 -07 000000610 INF: ReagentValve: Move- from 3 to 1 took 408 steps, expected 408. Error = 0 steps (0.0%)
17-03-17 22:42:59.378 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 22:42:59.398 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-17 22:42:59.398 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 22:42:59.498 -07 000000610 INF: =================== Cycle #67, Pumping Reagent IMT (1) ===================
17-03-17 22:42:59.498 -07 000000610 INF: LanePump: Pumping from 1, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 22:42:59.498 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:42:59.528 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 22:42:59.528 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 22:42:59.528 -07 000000610 INF: =================== Cycle #67, Pumping Reagent IMT (1), Aspirating port InputPort ===================
17-03-17 22:42:59.658 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 22:42:59.698 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:43:00.188 -07 000000478 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 67, FrontChillerTemperature: 4.014009,
17-03-17 22:43:01.138 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:43:01.168 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:43:01.588 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:43:01.618 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:43:01.618 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-17 22:43:01.618 -07 000000610 INF: =================== Cycle #67, Pumping Reagent IMT (1) ===================
17-03-17 22:43:01.748 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:43:01.778 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 22:43:01.778 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 22:43:01.908 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:43:01.938 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 22:43:01.938 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 22:43:01.938 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 22:43:01.998 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:43:01.998 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 66. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1043, R2=1071, Total=2114. Warn if over 250 bubbles per interval.
17-03-17 22:43:02.068 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 22:43:02.098 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:43:02.528 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:43:02.558 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:43:02.558 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 22:43:02.558 -07 000000610 INF: =================== Cycle #67 ===================
17-03-17 22:43:03.778 -07 000000610 INF: AsyncDelayTimer waited 1217ms
17-03-17 22:43:03.778 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 22:43:03.778 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 22:43:03.798 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-17 22:43:03.798 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 1 to 3. Moving 2 positions.
17-03-17 22:43:03.798 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 22:43:04.028 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 22:43:04.048 -07 000000610 INF: ReagentValve: Recv 01AC\r
17-03-17 22:43:04.048 -07 000000610 INF: ReagentValve: Move+ from 1 to 3 took 428 steps, expected 408. Error = 20 steps (4.9%)
17-03-17 22:43:04.098 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 22:43:04.118 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 22:43:04.118 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 22:43:04.218 -07 000000610 INF: =================== Cycle #67, Pumping Reagent PR2 (3) ===================
17-03-17 22:43:04.218 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 22:43:04.218 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:43:04.248 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 22:43:04.248 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 22:43:04.248 -07 000000610 INF: =================== Cycle #67, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 22:43:04.378 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 22:43:04.418 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:43:05.288 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:43:05.318 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:43:05.318 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-17 22:43:05.318 -07 000000610 INF: =================== Cycle #67, Pumping Reagent PR2 (3) ===================
17-03-17 22:43:05.448 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:43:05.478 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 22:43:05.478 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 22:43:05.558 -07 000000478 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 67, FrontChillerTemperature: 4.004458,
17-03-17 22:43:05.608 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:43:05.638 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 22:43:05.638 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 22:43:05.638 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 22:43:05.768 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 22:43:05.798 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:43:06.228 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:43:06.258 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:43:06.258 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 22:43:06.258 -07 000000610 INF: =================== Cycle #67 ===================
17-03-17 22:43:06.258 -07 000000610 INF: =================== Cycle #67, Flow Cell Temp 65° ===================
17-03-17 22:43:06.258 -07 000000610 INF: =================== Cycle #67, Flow Cell Temp 65°, FC temperature to 65° ===================
17-03-17 22:43:06.258 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 65000000\n [FlowCellTempControl]
17-03-17 22:43:06.258 -07 000000459 INF: FPGA: Recv TEC2TEMP 
17-03-17 22:43:06.268 -07 000000610 INF: FPGA: 'TEC2TEMP 0 65000000' command took 1 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 22:43:06.268 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 22:43:06.268 -07 000000459 INF: FPGA: Recv TEC2EN 
17-03-17 22:43:06.278 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:43:06.278 -07 000000610 INF: =================== Cycle #67, Flow Cell Temp 65° ===================
17-03-17 22:43:06.278 -07 000000610 INF: =================== Cycle #67 ===================
17-03-17 22:43:06.278 -07 000000610 INF: WaitCommand(30000) start
17-03-17 22:43:06.998 -07 000000478 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:43:06.998 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 66. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1043, R2=1071, Total=2114. Warn if over 250 bubbles per interval.
17-03-17 22:43:10.928 -07 000000433 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 67, FrontChillerTemperature: 4.012614,
17-03-17 22:43:11.998 -07 000000478 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:43:11.998 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 66. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1043, R2=1071, Total=2114. Warn if over 250 bubbles per interval.
17-03-17 22:43:16.888 -07 000000486 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 67, FrontChillerTemperature: 4.024884,
17-03-17 22:43:16.998 -07 000000478 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:43:16.998 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 66. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1043, R2=1071, Total=2114. Warn if over 250 bubbles per interval.
17-03-17 22:43:21.998 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:43:21.998 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 66. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1043, R2=1071, Total=2114. Warn if over 250 bubbles per interval.
17-03-17 22:43:22.248 -07 000000459 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 67, FrontChillerTemperature: 3.996267,
17-03-17 22:43:26.998 -07 000000478 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:43:26.998 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 66. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1043, R2=1071, Total=2114. Warn if over 250 bubbles per interval.
17-03-17 22:43:27.618 -07 000000459 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 67, FrontChillerTemperature: 4.004458,
17-03-17 22:43:31.998 -07 000000478 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:43:31.998 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 66. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1043, R2=1071, Total=2114. Warn if over 250 bubbles per interval.
17-03-17 22:43:32.988 -07 000000458 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 67, FrontChillerTemperature: 3.98264,
17-03-17 22:43:36.288 -07 000000610 INF: WaitCommand(30000) end
17-03-17 22:43:36.288 -07 000000610 INF: =================== Cycle #67, Pumping Reagent PR2 (3) ===================
17-03-17 22:43:36.288 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 5 µL, calling command Pumping to Flow Cell #1
17-03-17 22:43:36.388 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:43:36.418 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 22:43:36.418 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 22:43:36.418 -07 000000610 INF: =================== Cycle #67, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 22:43:36.548 -07 000000610 INF: LanePump: Xmit /1V400IP30R\r
17-03-17 22:43:36.588 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:43:36.998 -07 000000459 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:43:36.998 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 66. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1043, R2=1071, Total=2114. Warn if over 250 bubbles per interval.
17-03-17 22:43:37.128 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:43:37.158 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:43:37.158 -07 000000610 INF: LanePump: Waited 569 ms for pump motion to complete
17-03-17 22:43:37.158 -07 000000610 INF: =================== Cycle #67, Pumping Reagent PR2 (3) ===================
17-03-17 22:43:37.288 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:43:37.318 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 22:43:37.318 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-17 22:43:37.448 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:43:37.478 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 22:43:37.478 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-17 22:43:37.478 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 22:43:37.608 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 22:43:37.638 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:43:38.068 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:43:38.098 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:43:38.098 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 22:43:38.098 -07 000000610 INF: =================== Cycle #67 ===================
17-03-17 22:43:38.098 -07 000000478 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 22:43:38.098 -07 000000438 INF: WaitCommand(30000) start
17-03-17 22:43:38.098 -07 000000478 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 22:43:39.318 -07 000000478 INF: AsyncDelayTimer waited 1215ms
17-03-17 22:43:39.318 -07 000000478 INF: LanePump: Xmit /1?\r
17-03-17 22:43:39.348 -07 000000478 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 22:43:39.348 -07 000000478 INF: LanePump: Current Position of Pump is: 1920
17-03-17 22:43:39.478 -07 000000478 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 22:43:39.518 -07 000000478 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:43:39.588 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 67, FrontChillerTemperature: 3.988112,
17-03-17 22:43:41.858 -07 000000478 INF: LanePump: Xmit /1Q\r
17-03-17 22:43:41.888 -07 000000478 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:43:41.998 -07 000000486 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:43:41.998 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 66. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1043, R2=1071, Total=2114. Warn if over 250 bubbles per interval.
17-03-17 22:43:42.308 -07 000000478 INF: LanePump: Xmit /1Q\r
17-03-17 22:43:42.338 -07 000000478 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:43:42.338 -07 000000478 INF: LanePump: Waited 2819 ms for pump motion to complete
17-03-17 22:43:42.338 -07 000000478 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 22:43:42.338 -07 000000478 INF: ===================  ===================
17-03-17 22:43:44.958 -07 000000561 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 67, FrontChillerTemperature: 4.008536,
17-03-17 22:43:46.998 -07 000000482 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:43:46.998 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 66. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1043, R2=1071, Total=2114. Warn if over 250 bubbles per interval.
17-03-17 22:43:50.688 -07 000000482 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 67, FrontChillerTemperature: 3.989471,
17-03-17 22:43:51.998 -07 000000482 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:43:51.998 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 66. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1043, R2=1071, Total=2114. Warn if over 250 bubbles per interval.
17-03-17 22:43:56.338 -07 000000482 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 67, FrontChillerTemperature: 3.985358,
17-03-17 22:43:56.998 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:43:56.998 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 66. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1043, R2=1071, Total=2114. Warn if over 250 bubbles per interval.
17-03-17 22:44:01.708 -07 000000459 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 67, FrontChillerTemperature: 3.978563,
17-03-17 22:44:01.998 -07 000000478 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:44:01.998 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 66. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1043, R2=1071, Total=2114. Warn if over 250 bubbles per interval.
17-03-17 22:44:07.458 -07 000000433 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:44:07.458 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 66. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1043, R2=1071, Total=2114. Warn if over 250 bubbles per interval.
17-03-17 22:44:07.458 -07 000000561 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 67, FrontChillerTemperature: 3.999021,
17-03-17 22:44:08.108 -07 000000438 INF: WaitCommand(30000) end
17-03-17 22:44:08.108 -07 000000610 INF: =================== Cycle #67, Flow Cell Temp 22° ===================
17-03-17 22:44:08.108 -07 000000610 INF: =================== Cycle #67, Flow Cell Temp 22°, FC temperature to 22° ===================
17-03-17 22:44:08.108 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 22000000\n [FlowCellTempControl]
17-03-17 22:44:08.118 -07 000000486 INF: FPGA: Recv TEC2TEMP 
17-03-17 22:44:08.128 -07 000000610 INF: FPGA: 'TEC2TEMP 0 22000000' command took 1 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 22:44:08.128 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 22:44:08.128 -07 000000433 INF: FPGA: Recv TEC2EN 
17-03-17 22:44:08.138 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:44:08.138 -07 000000610 INF: =================== Cycle #67, Flow Cell Temp 22° ===================
17-03-17 22:44:08.138 -07 000000610 INF: =================== Cycle #67 ===================
17-03-17 22:44:08.138 -07 000000610 INF: =================== Cycle #67, Pumping Reagent PR2 (3) ===================
17-03-17 22:44:08.138 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-17 22:44:08.138 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:44:08.168 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 22:44:08.168 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 22:44:08.168 -07 000000610 INF: =================== Cycle #67, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 22:44:08.298 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-17 22:44:08.338 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:44:11.468 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:44:11.498 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:44:11.918 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:44:11.948 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:44:11.998 -07 000000486 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 2 R1 1
17-03-17 22:44:11.998 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 66. Bubbles during last 5000 ms interval: R1=1, R2=2, Total=3. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1044, R2=1073, Total=2117. Warn if over 250 bubbles per interval.
17-03-17 22:44:12.368 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:44:12.398 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:44:12.398 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-17 22:44:12.398 -07 000000610 INF: =================== Cycle #67, Pumping Reagent PR2 (3) ===================
17-03-17 22:44:12.528 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:44:12.558 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 22:44:12.558 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 22:44:12.688 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:44:12.718 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 22:44:12.718 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 22:44:12.718 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 22:44:12.848 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 22:44:12.878 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:44:13.108 -07 000000438 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 67, FrontChillerTemperature: 4.014009,
17-03-17 22:44:13.308 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:44:13.338 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:44:13.338 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 22:44:13.338 -07 000000610 INF: =================== Cycle #67 ===================
17-03-17 22:44:14.558 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 22:44:14.558 -07 000000610 INF: ReagentValve: Go to position 2 - PumpToFlowcell start
17-03-17 22:44:14.558 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 22:44:14.578 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 22:44:14.578 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 2. Moving 1 positions.
17-03-17 22:44:14.578 -07 000000610 INF: ReagentValve: Xmit -02\r
17-03-17 22:44:14.728 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 22:44:14.748 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-17 22:44:14.748 -07 000000610 INF: ReagentValve: Move- from 3 to 2 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-17 22:44:14.798 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 22:44:14.818 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-17 22:44:14.818 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 22:44:14.918 -07 000000610 INF: =================== Cycle #67, Pumping Reagent USM (2) ===================
17-03-17 22:44:14.918 -07 000000610 INF: LanePump: Pumping from 2, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 22:44:14.918 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:44:14.948 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 22:44:14.948 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 22:44:14.948 -07 000000610 INF: =================== Cycle #67, Pumping Reagent USM (2), Aspirating port InputPort ===================
17-03-17 22:44:15.078 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 22:44:15.118 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:44:16.558 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:44:16.588 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:44:16.998 -07 000000459 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:44:16.998 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 66. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1044, R2=1073, Total=2117. Warn if over 250 bubbles per interval.
17-03-17 22:44:17.008 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:44:17.038 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:44:17.038 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-17 22:44:17.038 -07 000000610 INF: =================== Cycle #67, Pumping Reagent USM (2) ===================
17-03-17 22:44:17.168 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:44:17.198 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 22:44:17.198 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 22:44:17.328 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:44:17.358 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 22:44:17.358 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 22:44:17.358 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 22:44:17.488 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 22:44:17.518 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:44:17.948 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:44:17.978 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:44:17.978 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 22:44:17.978 -07 000000610 INF: =================== Cycle #67 ===================
17-03-17 22:44:18.478 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 67, FrontChillerTemperature: 3.99219,
17-03-17 22:44:19.198 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 22:44:19.198 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 22:44:19.198 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 22:44:19.228 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-17 22:44:19.228 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 2 to 3. Moving 1 positions.
17-03-17 22:44:19.228 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 22:44:19.378 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 22:44:19.398 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-17 22:44:19.398 -07 000000610 INF: ReagentValve: Move+ from 2 to 3 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-17 22:44:19.448 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 22:44:19.468 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 22:44:19.468 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 22:44:19.568 -07 000000610 INF: =================== Cycle #67, Pumping Reagent PR2 (3) ===================
17-03-17 22:44:19.568 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 22:44:19.568 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:44:19.598 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 22:44:19.598 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 22:44:19.598 -07 000000610 INF: =================== Cycle #67, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 22:44:19.728 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 22:44:19.768 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:44:20.638 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:44:20.668 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:44:20.668 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-17 22:44:20.668 -07 000000610 INF: =================== Cycle #67, Pumping Reagent PR2 (3) ===================
17-03-17 22:44:20.798 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:44:20.828 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 22:44:20.828 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 22:44:20.958 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:44:20.988 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 22:44:20.988 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 22:44:20.988 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 22:44:21.118 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 22:44:21.148 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:44:21.578 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:44:21.608 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:44:21.608 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 22:44:21.608 -07 000000610 INF: =================== Cycle #67 ===================
17-03-17 22:44:21.608 -07 000000486 INF: WaitCommand(10000) start
17-03-17 22:44:21.608 -07 000000478 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 22:44:21.608 -07 000000478 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 22:44:21.998 -07 000000482 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 3
17-03-17 22:44:21.998 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 66. Bubbles during last 5000 ms interval: R1=3, R2=1, Total=4. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1047, R2=1074, Total=2121. Warn if over 250 bubbles per interval.
17-03-17 22:44:22.828 -07 000000478 INF: AsyncDelayTimer waited 1214ms
17-03-17 22:44:22.828 -07 000000478 INF: LanePump: Xmit /1?\r
17-03-17 22:44:22.858 -07 000000478 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 22:44:22.858 -07 000000478 INF: LanePump: Current Position of Pump is: 1110
17-03-17 22:44:22.988 -07 000000478 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 22:44:23.028 -07 000000478 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:44:24.558 -07 000000478 INF: LanePump: Xmit /1Q\r
17-03-17 22:44:24.558 -07 000000438 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 67, FrontChillerTemperature: 4.007176,
17-03-17 22:44:24.588 -07 000000478 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:44:25.008 -07 000000478 INF: LanePump: Xmit /1Q\r
17-03-17 22:44:25.038 -07 000000478 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:44:25.038 -07 000000478 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-17 22:44:25.038 -07 000000478 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 22:44:25.038 -07 000000478 INF: ===================  ===================
17-03-17 22:44:26.998 -07 000000458 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 0
17-03-17 22:44:26.998 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 66. Bubbles during last 5000 ms interval: R1=0, R2=1, Total=1. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1047, R2=1075, Total=2122. Warn if over 250 bubbles per interval.
17-03-17 22:44:29.918 -07 000000438 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 67, FrontChillerTemperature: 3.99219,
17-03-17 22:44:31.618 -07 000000486 INF: WaitCommand(10000) end
17-03-17 22:44:31.618 -07 000000610 INF: =================== Cycle #67, Imaging ===================
17-03-17 22:44:31.618 -07 000000610 INF: Imaging Cycle 67: ScanTilesCommand Cycle 67 time start.
17-03-17 22:44:31.618 -07 000000610 INF: ReagentValve: Go to position 24 (Plug) - Start of ScanTilesCommand
17-03-17 22:44:31.618 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 22:44:31.648 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 22:44:31.648 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 24. Moving 3 positions.
17-03-17 22:44:31.648 -07 000000610 INF: ReagentValve: Xmit -18\r
17-03-17 22:44:31.948 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 22:44:31.968 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-17 22:44:31.968 -07 000000610 INF: ReagentValve: Move- from 3 to 24 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-17 22:44:31.998 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 0
17-03-17 22:44:31.998 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 66. Bubbles during last 5000 ms interval: R1=0, R2=1, Total=1. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1047, R2=1076, Total=2123. Warn if over 250 bubbles per interval.
17-03-17 22:44:32.018 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 22:44:32.038 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-17 22:44:32.038 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:44:32.038 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:44:32.038 -07 000000561 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms start.
17-03-17 22:44:32.038 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:44:32.038 -07 000000561 INF: FPGA: Xmit EXLED1ON\n [RedLED]
17-03-17 22:44:32.038 -07 000000458 INF: FPGA: Recv EXLED1ON 
17-03-17 22:44:32.048 -07 000000561 INF: FPGA: 'EXLED1ON' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 22:44:32.048 -07 000000561 INF: FPGA: Xmit EXLED1ADCR\n [RedLED]
17-03-17 22:44:32.048 -07 000000478 INF: FPGA: Recv EXLED1ADCR 23047
17-03-17 22:44:32.058 -07 000000561 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:44:32.058 -07 000000561 INF: RedLED: Using Red data: Photodiode ADC 23047 --> 7.4 mW (old method), or 204.3 mW (new method). Difference = 196.9 mW
17-03-17 22:44:32.058 -07 000000561 INF: FPGA: Xmit EXLED1OFF\n [RedLED]
17-03-17 22:44:32.058 -07 000000482 INF: FPGA: Recv EXLED1OFF 
17-03-17 22:44:32.068 -07 000000561 INF: FPGA: 'EXLED1OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:44:32.068 -07 000000561 INF: RedLED: LED was on for 19 ms
17-03-17 22:44:32.068 -07 000000561 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms end. Duration was 25 ms.
17-03-17 22:44:32.068 -07 000000561 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms start.
17-03-17 22:44:32.068 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:44:32.068 -07 000000561 INF: FPGA: Xmit EXLED2ON\n [GreenLED]
17-03-17 22:44:32.068 -07 000000459 INF: FPGA: Recv EXLED2ON 
17-03-17 22:44:32.078 -07 000000561 INF: FPGA: 'EXLED2ON' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:44:32.078 -07 000000561 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-17 22:44:32.078 -07 000000433 INF: FPGA: Recv EXLED1ADCR 2100
17-03-17 22:44:32.088 -07 000000561 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:44:32.088 -07 000000561 INF: GreenLED: Using Green data: Photodiode ADC 2100 --> 0.9 mW (old method), or 182.5 mW (new method). Difference = 181.5 mW
17-03-17 22:44:32.088 -07 000000561 INF: FPGA: Xmit EXLED2OFF\n [GreenLED]
17-03-17 22:44:32.088 -07 000000459 INF: FPGA: Recv EXLED2OFF 
17-03-17 22:44:32.098 -07 000000561 INF: FPGA: 'EXLED2OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:44:32.098 -07 000000561 INF: GreenLED: LED was on for 19 ms
17-03-17 22:44:32.098 -07 000000561 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms end. Duration was 28 ms.
17-03-17 22:44:32.098 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-17 22:44:32.098 -07 000000458 INF: FPGA: Recv EMCUR 
17-03-17 22:44:32.108 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:44:32.108 -07 000000610 INF: FPGA: Xmit EMOUT 20 70\n [Compensator]
17-03-17 22:44:32.608 -07 000000576 INF: FPGA: Recv EMOUT
17-03-17 22:44:32.608 -07 000000610 INF: FPGA: 'EMOUT 20 70' command took 0 ms to send, 493 ms to get response, and 502 ms overall
17-03-17 22:44:32.608 -07 000000610 INF: FPGA: Xmit EMCUR 75\n [Compensator]
17-03-17 22:44:32.608 -07 000000433 INF: FPGA: Recv EMCUR 
17-03-17 22:44:32.618 -07 000000610 INF: FPGA: 'EMCUR 75' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:44:32.618 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 22:44:32.618 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 75.3818359375, Z-Position -0.127595560155609. ------
17-03-17 22:44:32.618 -07 000000458 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:44:32.618 -07 000000433 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.17943 mm
17-03-17 22:44:32.618 -07 000000433 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:44:32.628 -07 000000475 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:44:32.628 -07 000000458 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:44:32.628 -07 000000438 INF: Z Motor: Entering MoveAbsStepped (DAC = 39196, sync = True, waitForSettling = False)
17-03-17 22:44:32.628 -07 000000438 INF: Z Motor: Moving to -0.179428 mm, started at -0.127596 mm, distance = -51.83 um
17-03-17 22:44:32.628 -07 000000458 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:44:32.628 -07 000000478 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-17 22:44:32.628 -07 000000478 INF: Y Motor: Moving to 59.9126 mm, started at 75.3818 mm, delta = -15.4692 mm
17-03-17 22:44:32.638 -07 000000438 INF: FPGA: Xmit ZDACW 39196\n [Z Motor]
17-03-17 22:44:32.638 -07 000000482 INF: FPGA: Recv ZDACW
17-03-17 22:44:32.648 -07 000000438 INF: FPGA: 'ZDACW 39196' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-17 22:44:32.648 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:44:32.648 -07 000000576 INF: FPGA: Recv YRDPOS 154382
17-03-17 22:44:32.658 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-17 22:44:32.658 -07 000000478 INF: Y Motor: Encoder = 154382 = motor step 120610.9 = 75.3818 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:44:32.658 -07 000000478 INF: Y Motor: Last commanded position = 75.3806 mm (120608.9 steps), delta from last commanded position = -15.4680 mm (-24748.8 steps). UsingTableMove = False
17-03-17 22:44:32.658 -07 000000478 INF: Y Motor: Moving to 122701 encoder counts
17-03-17 22:44:32.658 -07 000000438 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:44:32.668 -07 000000478 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-17 22:44:33.478 -07 000000576 INF: FPGA: Recv ZDACR 39196
17-03-17 22:44:33.478 -07 000000576 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:44:33.478 -07 000000458 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 840 ms to get response, and 849 ms overall
17-03-17 22:44:33.478 -07 000000438 INF: FPGA: 'ZDACR' command took 1 ms to send, 810 ms to get response, and 830 ms overall
17-03-17 22:44:33.478 -07 000000438 INF: Z Motor: MoveAbsStepped took 849 ms (did NOT wait for settling yet))
17-03-17 22:44:34.348 -07 000000561 INF: FPGA: Recv YMVTO 122703 24777
17-03-17 22:44:34.348 -07 000000478 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1677 ms to get response, and 1696 ms overall
17-03-17 22:44:34.348 -07 000000478 INF: Y Motor: Position error before settling = 2 encoder counts (0.001 mm)
17-03-17 22:44:34.348 -07 000000478 INF: Y Motor: To move from 75.382 to 59.913 (-15.469 mm) should take 24751 steps, but required 24777 steps (15.486 mm). Slippage = 0.016 mm (0.00%).
17-03-17 22:44:34.348 -07 000000478 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1696 ms, distance = 15.469 mm, average velocity = 9.121 mm/sec
17-03-17 22:44:35.278 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 67, FrontChillerTemperature: 3.996267,
17-03-17 22:44:36.998 -07 000000475 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:44:36.998 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 66. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1047, R2=1076, Total=2123. Warn if over 250 bubbles per interval.
17-03-17 22:44:37.198 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:44:37.198 -07 000000438 INF: FPGA: Recv YRDPOS 122698
17-03-17 22:44:37.208 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:44:37.208 -07 000000478 INF: Y Motor: Encoder = 122698 = motor step 95857.8 = 59.9111 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:44:37.228 -07 000000478 INF: Y Motor: After move to 59.912609, error = -0.001476, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:44:37.228 -07 000000478 INF: Y Motor: Position error after settling = -3 encoder counts (-0.001 mm), Delta during settling = -5 counts (-0.002 mm)
17-03-17 22:44:37.228 -07 000000478 INF: Y Motor: Moved to 59.9111 after 4605 ms
17-03-17 22:44:37.228 -07 000000433 INF: Z Motor: EndOfMoveAbsStepped: target = -0.179428 mm (DAC = 39196)
17-03-17 22:44:37.238 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:44:37.238 -07 000000475 INF: FPGA: Recv ZSGSRD 37230
17-03-17 22:44:37.248 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:44:37.248 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:44:37.248 -07 000000478 INF: FPGA: Recv ZSGSRD 37221
17-03-17 22:44:37.258 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:44:37.258 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:44:37.258 -07 000000458 INF: FPGA: Recv ZSGSRD 37216
17-03-17 22:44:37.268 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:44:37.268 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:44:37.268 -07 000000459 INF: FPGA: Recv ZSGSRD 37216
17-03-17 22:44:37.278 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:44:37.278 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:44:37.278 -07 000000458 INF: FPGA: Recv ZSGSRD 37223
17-03-17 22:44:37.288 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:44:37.288 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:44:37.288 -07 000000478 INF: FPGA: Recv ZSGSRD 37221
17-03-17 22:44:37.298 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:44:37.298 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:44:37.298 -07 000000459 INF: FPGA: Recv ZSGSRD 37221
17-03-17 22:44:37.308 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:44:37.308 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:44:37.308 -07 000000482 INF: FPGA: Recv ZSGSRD 37220
17-03-17 22:44:37.318 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:44:37.318 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:44:37.318 -07 000000478 INF: FPGA: Recv ZSGSRD 37221
17-03-17 22:44:37.328 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:44:37.328 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:44:37.328 -07 000000482 INF: FPGA: Recv ZSGSRD 37219
17-03-17 22:44:37.338 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:44:37.338 -07 000000433 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:44:37.338 -07 000000438 INF: FPGA: Recv ZPIEZORD 33667
17-03-17 22:44:37.348 -07 000000433 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:44:37.348 -07 000000433 INF: Z Motor: Piezo is near 51.9 V (nominally 0 to 100 V), expect near 59.8 V, since DAC is at 5.981 V. Piezo Error = -7.9 V.
17-03-17 22:44:37.348 -07 000000433 INF: Z Motor: ReadAdcAverage: Commanded Z = -179.4 um, Read 10 ADC samples: Avg = 37221 (-178.5 uncal um), Error = 0.9 uncal um, Median = 37221 (-178.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 37216 (-178.5 uncal um), Max = 37230 (-178.6 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 22:44:37.348 -07 000000433 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37221, posNoise = 9, negNoise = 5
17-03-17 22:44:37.348 -07 000000433 INF: Z Motor: After move to -0.179428, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:44:37.348 -07 000000433 INF: Z Motor: Settle wait time = 4608 ms, measure time = 111 ms (allowed 150 ms), total time = 4719 ms
17-03-17 22:44:37.348 -07 000000433 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-17 22:44:37.388 -07 000000433 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4762 ms
17-03-17 22:44:37.388 -07 000000433 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:44:37.388 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:44:37.388 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:44:37.388 -07 000000459 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:44:37.388 -07 000000478 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:44:37.388 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:44:37.388 -07 000000458 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:44:37.388 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:44:37.388 -07 000000478 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-17 22:44:37.418 -07 000000478 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 24 ms.
17-03-17 22:44:37.418 -07 000000478 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:44:37.418 -07 000000478 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-17 22:44:37.418 -07 000000478 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:44:37.438 -07 000000478 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 22:44:37.438 -07 000000478 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 43 ms.
17-03-17 22:44:37.438 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:44:37.488 -07 000000433 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:44:37.678 -07 000000561 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:44:37.678 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:44:37.688 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:44:37.688 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 615280568, 0x0, 559484976) start.
17-03-17 22:44:37.718 -07 000000459 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:44:37.718 -07 000000482 INF: FPGA: Recv CAMSNAP
17-03-17 22:44:37.728 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 285 ms overall
17-03-17 22:44:37.808 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 615280568, 0x0, 559484976) end. Duration was 125 ms.
17-03-17 22:44:37.808 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:44:37.808 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:44:37.808 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-17 22:44:37.828 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:44:37.828 -07 000000459 INF: Image SNR check: start
17-03-17 22:44:37.828 -07 000000458 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:44:37.838 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:44:37.838 -07 000000561 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:44:37.838 -07 000000459 INF: Image SNR check: pass  [peak (Max-Min)=58.88]
17-03-17 22:44:37.838 -07 000000459 INF: Autofocus start
17-03-17 22:44:37.838 -07 000000459 INF: MeasureProfile start
17-03-17 22:44:37.858 -07 000000459 INF: MeasureProfile done
17-03-17 22:44:37.858 -07 000000459 INF: X=16  Z correction [um]=0.01042744
17-03-17 22:44:37.858 -07 000000459 INF: Autofocus finished
17-03-17 22:44:38.038 -07 000000459 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:44:38.038 -07 000000561 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:44:38.038 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.9111328125, Z-position -0.17943895213962. ----------
17-03-17 22:44:38.038 -07 000000610 INF: Cycle	67	Tile	1	Exposure Settings		A	459	G	221	T	221	C	459
17-03-17 22:44:38.048 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37711, sync = True, waitForSettling = True)
17-03-17 22:44:38.048 -07 000000610 INF: Z Motor: Moving to -0.172630 mm, started at -0.179439 mm, distance = 6.81 um
17-03-17 22:44:38.048 -07 000000610 INF: FPGA: Xmit ZDACW 37711\n [Z Motor]
17-03-17 22:44:38.048 -07 000000482 INF: FPGA: Recv ZDACW
17-03-17 22:44:38.058 -07 000000610 INF: FPGA: 'ZDACW 37711' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:44:38.058 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:44:38.058 -07 000000458 INF: FPGA: Recv ZDACR 37711
17-03-17 22:44:38.068 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:44:38.068 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:44:38.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:44:38.218 -07 000000478 INF: FPGA: Recv ZSGSRD 36160
17-03-17 22:44:38.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:44:38.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:44:38.228 -07 000000433 INF: FPGA: Recv ZSGSRD 36169
17-03-17 22:44:38.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:44:38.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:44:38.238 -07 000000478 INF: FPGA: Recv ZSGSRD 36166
17-03-17 22:44:38.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:44:38.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:44:38.248 -07 000000433 INF: FPGA: Recv ZSGSRD 36164
17-03-17 22:44:38.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:44:38.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:44:38.258 -07 000000475 INF: FPGA: Recv ZSGSRD 36157
17-03-17 22:44:38.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:44:38.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:44:38.268 -07 000000561 INF: FPGA: Recv ZSGSRD 36161
17-03-17 22:44:38.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:44:38.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:44:38.278 -07 000000475 INF: FPGA: Recv ZSGSRD 36171
17-03-17 22:44:38.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:44:38.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:44:38.288 -07 000000433 INF: FPGA: Recv ZSGSRD 36164
17-03-17 22:44:38.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:44:38.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:44:38.298 -07 000000478 INF: FPGA: Recv ZSGSRD 36161
17-03-17 22:44:38.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:44:38.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:44:38.308 -07 000000433 INF: FPGA: Recv ZSGSRD 36163
17-03-17 22:44:38.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:44:38.318 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:44:38.318 -07 000000475 INF: FPGA: Recv ZPIEZORD 32233
17-03-17 22:44:38.328 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:44:38.328 -07 000000610 INF: Z Motor: Piezo is near 48.9 V (nominally 0 to 100 V), expect near 57.5 V, since DAC is at 5.754 V. Piezo Error = -8.7 V.
17-03-17 22:44:38.328 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.6 um, Read 10 ADC samples: Avg = 36164 (-171.8 uncal um), Error = 0.9 uncal um, Median = 36164 (-171.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36157 (-171.7 uncal um), Max = 36171 (-171.8 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 22:44:38.328 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36164, posNoise = 7, negNoise = 7
17-03-17 22:44:38.328 -07 000000610 INF: Z Motor: After move to -0.172630, error = -0.000019, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:44:38.328 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 22:44:38.328 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:44:38.328 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:44:38.328 -07 000000482 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:44:38.328 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:44:38.328 -07 000000459 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:44:38.328 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:44:38.328 -07 000000475 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:44:38.328 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:44:38.328 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:44:38.328 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:44:38.328 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:44:38.328 -07 000000475 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-17 22:44:38.328 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 22:44:38.338 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:44:38.348 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 22:44:38.348 -07 000000459 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 22:44:38.358 -07 000000475 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 23 ms.
17-03-17 22:44:38.358 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:44:38.358 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 22:44:38.358 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:44:38.368 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 12 ms.
17-03-17 22:44:38.368 -07 000000475 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 39 ms.
17-03-17 22:44:38.368 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 459 459 221 221 37888 150\n [Camera]
17-03-17 22:44:38.568 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:44:39.028 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 651
17-03-17 22:44:39.028 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 651
17-03-17 22:44:39.028 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:44:39.028 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:44:39.028 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 22:44:39.028 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 651
17-03-17 22:44:39.028 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 651
17-03-17 22:44:39.028 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:44:39.028 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:44:39.028 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 22:44:39.218 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37888 844
17-03-17 22:44:39.368 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP turning grn on 994
17-03-17 22:44:39.428 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 399 ms.
17-03-17 22:44:39.428 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 22:44:39.428 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:44:39.428 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 398 ms.
17-03-17 22:44:39.428 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 22:44:39.428 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:44:39.438 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 9 ms.
17-03-17 22:44:39.438 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-17 22:44:39.438 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-17 22:44:39.448 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-17 22:44:39.598 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1215
17-03-17 22:44:39.598 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1215
17-03-17 22:44:39.598 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:44:39.598 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:44:39.598 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 2235207384, 0x0, 391868352) start.
17-03-17 22:44:39.598 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1215
17-03-17 22:44:39.598 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1215
17-03-17 22:44:39.598 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:44:39.598 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:44:39.598 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 2298580584, 0x0, 418435064) start.
17-03-17 22:44:39.788 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP 1407
17-03-17 22:44:39.788 -07 000000486 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:44:39.788 -07 000000610 INF: FPGA: 'CAMDBLSNAP 459 459 221 221 37888 150' command took 2 ms to send, 1411 ms to get response, and 1415 ms overall
17-03-17 22:44:39.788 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 22:44:39.788 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.9111328125, Z-Position -0.172648559905778. ------
17-03-17 22:44:39.788 -07 000000458 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:44:39.788 -07 000000561 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.17867 mm
17-03-17 22:44:39.788 -07 000000561 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:44:39.798 -07 000000576 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-17 22:44:39.798 -07 000000576 INF: Y Motor: Moving to 60.7426 mm, started at 59.9111 mm, delta = 0.8315 mm
17-03-17 22:44:39.798 -07 000000547 INF: Z Motor: Entering MoveAbsStepped (DAC = 39031, sync = True, waitForSettling = False)
17-03-17 22:44:39.798 -07 000000547 INF: Z Motor: Moving to -0.178672 mm, started at -0.172649 mm, distance = -6.02 um
17-03-17 22:44:39.798 -07 000000475 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:44:39.798 -07 000000458 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 4 ms overall
17-03-17 22:44:39.798 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:44:39.798 -07 000000551 INF: FPGA: Recv YRDPOS 122698
17-03-17 22:44:39.808 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:44:39.808 -07 000000576 INF: Y Motor: Encoder = 122698 = motor step 95857.8 = 59.9111 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:44:39.808 -07 000000576 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:44:39.808 -07 000000576 INF: Y Motor: Moving 1330 steps2
17-03-17 22:44:39.808 -07 000000547 INF: FPGA: Xmit ZDACW 39031\n [Z Motor]
17-03-17 22:44:39.808 -07 000000486 INF: FPGA: Recv ZDACW
17-03-17 22:44:39.818 -07 000000458 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:44:39.818 -07 000000547 INF: FPGA: 'ZDACW 39031' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-17 22:44:39.828 -07 000000576 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:44:39.838 -07 000000547 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:44:39.838 -07 000000551 INF: FPGA: Recv ZDACR 39031
17-03-17 22:44:39.848 -07 000000547 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:44:39.848 -07 000000547 INF: Z Motor: MoveAbsStepped took 48 ms (did NOT wait for settling yet))
17-03-17 22:44:39.998 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 2235207384, 0x0, 391868352) end. Duration was 400 ms.
17-03-17 22:44:39.998 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 22:44:39.998 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:44:39.998 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 2298580584, 0x0, 418435064) end. Duration was 398 ms.
17-03-17 22:44:39.998 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 22:44:39.998 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:44:40.008 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-17 22:44:40.008 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-17 22:44:40.008 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-17 22:44:40.008 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-17 22:44:40.018 -07 000000475 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:44:40.018 -07 000000458 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 220 ms overall
17-03-17 22:44:40.198 -07 000000482 INF: FPGA: Recv YMVTILE
17-03-17 22:44:40.198 -07 000000576 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-17 22:44:40.238 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:44:40.238 -07 000000475 INF: FPGA: Recv YRDPOS 124381
17-03-17 22:44:40.248 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:44:40.248 -07 000000576 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:44:40.248 -07 000000576 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-17 22:44:40.248 -07 000000576 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.831 mm, average velocity = 2.105 mm/sec
17-03-17 22:44:40.638 -07 000000482 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 67, FrontChillerTemperature: 3.988112,
17-03-17 22:44:41.198 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:44:41.198 -07 000000627 INF: FPGA: Recv YRDPOS 124381
17-03-17 22:44:41.208 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:44:41.208 -07 000000576 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:44:41.228 -07 000000576 INF: Y Motor: After move to 60.742607, error = -0.009697, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:44:41.228 -07 000000576 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:44:41.228 -07 000000576 INF: Y Motor: Moved to 60.7329 after 1436 ms (table move)
17-03-17 22:44:41.238 -07 000000561 INF: Z Motor: EndOfMoveAbsStepped: target = -0.178672 mm (DAC = 39031)
17-03-17 22:44:41.238 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:44:41.238 -07 000000627 INF: FPGA: Recv ZSGSRD 37107
17-03-17 22:44:41.248 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:44:41.248 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:44:41.248 -07 000000576 INF: FPGA: Recv ZSGSRD 37104
17-03-17 22:44:41.258 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:44:41.258 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:44:41.258 -07 000000433 INF: FPGA: Recv ZSGSRD 37104
17-03-17 22:44:41.268 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:44:41.268 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:44:41.268 -07 000000459 INF: FPGA: Recv ZSGSRD 37110
17-03-17 22:44:41.278 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:44:41.278 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:44:41.278 -07 000000438 INF: FPGA: Recv ZSGSRD 37108
17-03-17 22:44:41.288 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:44:41.288 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:44:41.288 -07 000000459 INF: FPGA: Recv ZSGSRD 37099
17-03-17 22:44:41.298 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:44:41.298 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:44:41.298 -07 000000438 INF: FPGA: Recv ZSGSRD 37106
17-03-17 22:44:41.308 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:44:41.308 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:44:41.308 -07 000000459 INF: FPGA: Recv ZSGSRD 37099
17-03-17 22:44:41.318 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:44:41.318 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:44:41.318 -07 000000433 INF: FPGA: Recv ZSGSRD 37099
17-03-17 22:44:41.328 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:44:41.328 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:44:41.328 -07 000000459 INF: FPGA: Recv ZSGSRD 37104
17-03-17 22:44:41.338 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:44:41.338 -07 000000561 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:44:41.338 -07 000000438 INF: FPGA: Recv ZPIEZORD 33531
17-03-17 22:44:41.348 -07 000000561 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:44:41.348 -07 000000561 INF: Z Motor: Piezo is near 51.6 V (nominally 0 to 100 V), expect near 59.6 V, since DAC is at 5.956 V. Piezo Error = -7.9 V.
17-03-17 22:44:41.348 -07 000000561 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.7 um, Read 10 ADC samples: Avg = 37104 (-177.8 uncal um), Error = 0.9 uncal um, Median = 37104 (-177.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 37099 (-177.8 uncal um), Max = 37110 (-177.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 22:44:41.348 -07 000000561 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37104, posNoise = 6, negNoise = 5
17-03-17 22:44:41.348 -07 000000561 INF: Z Motor: After move to -0.178672, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:44:41.348 -07 000000561 INF: Z Motor: Settle wait time = 1439 ms, measure time = 110 ms (allowed 150 ms), total time = 1549 ms
17-03-17 22:44:41.348 -07 000000561 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-17 22:44:41.388 -07 000000561 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1591 ms
17-03-17 22:44:41.388 -07 000000561 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:44:41.388 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:44:41.388 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:44:41.388 -07 000000459 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:44:41.388 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:44:41.388 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:44:41.388 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:44:41.398 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:44:41.398 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:44:41.398 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:44:41.398 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:44:41.408 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 22:44:41.408 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 22:44:41.408 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:44:41.458 -07 000000551 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:44:41.658 -07 000000561 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:44:41.658 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:44:41.658 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:44:41.658 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1201016592, 0x0, 559484976) start.
17-03-17 22:44:41.698 -07 000000627 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:44:41.698 -07 000000438 INF: FPGA: Recv CAMSNAP
17-03-17 22:44:41.698 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 284 ms overall
17-03-17 22:44:41.788 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1201016592, 0x0, 559484976) end. Duration was 128 ms.
17-03-17 22:44:41.788 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:44:41.788 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 22:44:41.788 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-17 22:44:41.798 -07 000000561 INF: Autofocus start
17-03-17 22:44:41.798 -07 000000561 INF: MeasureProfile start
17-03-17 22:44:41.798 -07 000000433 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:44:41.798 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:44:41.808 -07 000000433 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:44:41.808 -07 000000433 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:44:41.808 -07 000000561 INF: MeasureProfile done
17-03-17 22:44:41.808 -07 000000561 INF: X=0  Z correction [um]=-0.0713522
17-03-17 22:44:41.808 -07 000000561 INF: Autofocus finished
17-03-17 22:44:41.998 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:44:41.998 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 66. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1047, R2=1076, Total=2123. Warn if over 250 bubbles per interval.
17-03-17 22:44:42.008 -07 000000459 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:44:42.008 -07 000000433 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:44:42.008 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.73291015625, Z-position -0.178687319319033. ----------
17-03-17 22:44:42.008 -07 000000610 INF: Cycle	67	Tile	2	Exposure Settings		A	459	G	221	T	221	C	459
17-03-17 22:44:42.018 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37528, sync = True, waitForSettling = True)
17-03-17 22:44:42.018 -07 000000610 INF: Z Motor: Moving to -0.171792 mm, started at -0.178687 mm, distance = 6.90 um
17-03-17 22:44:42.018 -07 000000610 INF: FPGA: Xmit ZDACW 37528\n [Z Motor]
17-03-17 22:44:42.018 -07 000000561 INF: FPGA: Recv ZDACW
17-03-17 22:44:42.028 -07 000000610 INF: FPGA: 'ZDACW 37528' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:44:42.028 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:44:42.028 -07 000000551 INF: FPGA: Recv ZDACR 37528
17-03-17 22:44:42.038 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:44:42.038 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:44:42.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:44:42.188 -07 000000459 INF: FPGA: Recv ZSGSRD 36032
17-03-17 22:44:42.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:44:42.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:44:42.198 -07 000000551 INF: FPGA: Recv ZSGSRD 36038
17-03-17 22:44:42.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:44:42.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:44:42.208 -07 000000459 INF: FPGA: Recv ZSGSRD 36036
17-03-17 22:44:42.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:44:42.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:44:42.218 -07 000000576 INF: FPGA: Recv ZSGSRD 36031
17-03-17 22:44:42.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:44:42.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:44:42.228 -07 000000433 INF: FPGA: Recv ZSGSRD 36031
17-03-17 22:44:42.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:44:42.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:44:42.238 -07 000000551 INF: FPGA: Recv ZSGSRD 36029
17-03-17 22:44:42.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:44:42.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:44:42.248 -07 000000551 INF: FPGA: Recv ZSGSRD 36039
17-03-17 22:44:42.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:44:42.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:44:42.258 -07 000000561 INF: FPGA: Recv ZSGSRD 36038
17-03-17 22:44:42.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:44:42.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:44:42.268 -07 000000433 INF: FPGA: Recv ZSGSRD 36030
17-03-17 22:44:42.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:44:42.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:44:42.278 -07 000000438 INF: FPGA: Recv ZSGSRD 36036
17-03-17 22:44:42.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:44:42.288 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:44:42.288 -07 000000459 INF: FPGA: Recv ZPIEZORD 32080
17-03-17 22:44:42.298 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:44:42.298 -07 000000610 INF: Z Motor: Piezo is near 48.5 V (nominally 0 to 100 V), expect near 57.3 V, since DAC is at 5.726 V. Piezo Error = -8.7 V.
17-03-17 22:44:42.298 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.8 um, Read 10 ADC samples: Avg = 36034 (-170.9 uncal um), Error = 0.9 uncal um, Median = 36034 (-170.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 36029 (-170.9 uncal um), Max = 36039 (-171.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 22:44:42.298 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36034, posNoise = 5, negNoise = 5
17-03-17 22:44:42.298 -07 000000610 INF: Z Motor: After move to -0.171792, error = -0.000021, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:44:42.298 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 22:44:42.298 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:44:42.298 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:44:42.298 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:44:42.298 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:44:42.298 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:44:42.298 -07 000000551 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:44:42.298 -07 000000459 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:44:42.298 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:44:42.298 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:44:42.298 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:44:42.298 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:44:42.298 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:44:42.298 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:44:42.308 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:44:42.308 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:44:42.308 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:44:42.318 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 13 ms.
17-03-17 22:44:42.318 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms.
17-03-17 22:44:42.318 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 12 ms.
17-03-17 22:44:42.318 -07 000000459 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 17 ms.
17-03-17 22:44:42.318 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 459 459 221 221 37704 150\n [Camera]
17-03-17 22:44:42.518 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:44:42.978 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 651
17-03-17 22:44:42.978 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 651
17-03-17 22:44:42.978 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:44:42.978 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:44:42.978 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2350877912, 0x0, 391868352) start.
17-03-17 22:44:42.978 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 651
17-03-17 22:44:42.978 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 651
17-03-17 22:44:42.978 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:44:42.978 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:44:42.978 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-17 22:44:43.168 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37704 844
17-03-17 22:44:43.318 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning grn on 994
17-03-17 22:44:43.378 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2350877912, 0x0, 391868352) end. Duration was 397 ms.
17-03-17 22:44:43.378 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 22:44:43.378 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:44:43.378 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:44:43.378 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 22:44:43.378 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 399 ms.
17-03-17 22:44:43.378 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 22:44:43.378 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:44:43.388 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:44:43.388 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-17 22:44:43.548 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1215
17-03-17 22:44:43.548 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1215
17-03-17 22:44:43.548 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:44:43.548 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:44:43.548 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) start.
17-03-17 22:44:43.548 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1215
17-03-17 22:44:43.548 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1215
17-03-17 22:44:43.548 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:44:43.548 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:44:43.548 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) start.
17-03-17 22:44:43.738 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP 1408
17-03-17 22:44:43.738 -07 000000433 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:44:43.738 -07 000000610 INF: FPGA: 'CAMDBLSNAP 459 459 221 221 37704 150' command took 2 ms to send, 1412 ms to get response, and 1415 ms overall
17-03-17 22:44:43.738 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 22:44:43.738 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.73291015625, Z-Position -0.171813412327349. ------
17-03-17 22:44:43.738 -07 000000478 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:44:43.738 -07 000000459 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.17834 mm
17-03-17 22:44:43.738 -07 000000459 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:44:43.748 -07 000000438 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-17 22:44:43.748 -07 000000438 INF: Y Motor: Moving to 61.5726 mm, started at 60.7329 mm, delta = 0.8397 mm
17-03-17 22:44:43.748 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:44:43.748 -07 000000433 INF: Z Motor: Entering MoveAbsStepped (DAC = 38959, sync = True, waitForSettling = False)
17-03-17 22:44:43.748 -07 000000433 INF: Z Motor: Moving to -0.178343 mm, started at -0.171813 mm, distance = -6.53 um
17-03-17 22:44:43.748 -07 000000482 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:44:43.748 -07 000000478 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 22:44:43.748 -07 000000475 INF: FPGA: Recv YRDPOS 124382
17-03-17 22:44:43.758 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:44:43.758 -07 000000433 INF: FPGA: Xmit ZDACW 38959\n [Z Motor]
17-03-17 22:44:43.758 -07 000000438 INF: Y Motor: Encoder = 124382 = motor step 97173.4 = 60.7334 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:44:43.758 -07 000000576 INF: FPGA: Recv ZDACW
17-03-17 22:44:43.758 -07 000000438 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:44:43.758 -07 000000438 INF: Y Motor: Moving 1343 steps-20
17-03-17 22:44:43.768 -07 000000478 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:44:43.768 -07 000000433 INF: FPGA: 'ZDACW 38959' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-17 22:44:43.778 -07 000000438 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:44:43.788 -07 000000433 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:44:43.788 -07 000000547 INF: FPGA: Recv ZDACR 38959
17-03-17 22:44:43.798 -07 000000433 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:44:43.798 -07 000000433 INF: Z Motor: MoveAbsStepped took 48 ms (did NOT wait for settling yet))
17-03-17 22:44:43.948 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) end. Duration was 402 ms.
17-03-17 22:44:43.948 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 22:44:43.948 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:44:43.948 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) end. Duration was 401 ms.
17-03-17 22:44:43.948 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 22:44:43.948 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:44:43.958 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:44:43.958 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 22:44:43.958 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-17 22:44:43.958 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-17 22:44:43.968 -07 000000433 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:44:43.968 -07 000000478 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 220 ms overall
17-03-17 22:44:44.148 -07 000000458 INF: FPGA: Recv YMVTILE
17-03-17 22:44:44.148 -07 000000438 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 392 ms overall
17-03-17 22:44:44.188 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:44:44.198 -07 000000478 INF: FPGA: Recv YRDPOS 126083
17-03-17 22:44:44.198 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 22:44:44.198 -07 000000438 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:44:44.198 -07 000000438 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-17 22:44:44.198 -07 000000438 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 392 ms, distance = 0.840 mm, average velocity = 2.142 mm/sec
17-03-17 22:44:45.148 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:44:45.148 -07 000000482 INF: FPGA: Recv YRDPOS 126083
17-03-17 22:44:45.158 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:44:45.158 -07 000000438 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:44:45.178 -07 000000438 INF: Y Motor: After move to 61.572609, error = -0.008644, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:44:45.178 -07 000000438 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:44:45.178 -07 000000438 INF: Y Motor: Moved to 61.5640 after 1435 ms (table move)
17-03-17 22:44:45.178 -07 000000459 INF: Z Motor: EndOfMoveAbsStepped: target = -0.178343 mm (DAC = 38959)
17-03-17 22:44:45.178 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:44:45.188 -07 000000438 INF: FPGA: Recv ZSGSRD 37045
17-03-17 22:44:45.188 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-17 22:44:45.188 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:44:45.188 -07 000000482 INF: FPGA: Recv ZSGSRD 37060
17-03-17 22:44:45.198 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:44:45.198 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:44:45.198 -07 000000482 INF: FPGA: Recv ZSGSRD 37052
17-03-17 22:44:45.208 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:44:45.208 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:44:45.208 -07 000000482 INF: FPGA: Recv ZSGSRD 37045
17-03-17 22:44:45.218 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:44:45.218 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:44:45.218 -07 000000438 INF: FPGA: Recv ZSGSRD 37053
17-03-17 22:44:45.228 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:44:45.228 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:44:45.228 -07 000000547 INF: FPGA: Recv ZSGSRD 37063
17-03-17 22:44:45.238 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:44:45.238 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:44:45.238 -07 000000429 INF: FPGA: Recv ZSGSRD 37059
17-03-17 22:44:45.248 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:44:45.248 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:44:45.248 -07 000000576 INF: FPGA: Recv ZSGSRD 37054
17-03-17 22:44:45.258 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:44:45.258 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:44:45.258 -07 000000561 INF: FPGA: Recv ZSGSRD 37052
17-03-17 22:44:45.268 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:44:45.268 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:44:45.268 -07 000000438 INF: FPGA: Recv ZSGSRD 37051
17-03-17 22:44:45.278 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:44:45.278 -07 000000459 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:44:45.278 -07 000000478 INF: FPGA: Recv ZPIEZORD 33447
17-03-17 22:44:45.288 -07 000000459 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:44:45.288 -07 000000459 INF: Z Motor: Piezo is near 51.5 V (nominally 0 to 100 V), expect near 59.4 V, since DAC is at 5.945 V. Piezo Error = -8.0 V.
17-03-17 22:44:45.288 -07 000000459 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.3 um, Read 10 ADC samples: Avg = 37053 (-177.5 uncal um), Error = 0.9 uncal um, Median = 37052 (-177.5 uncal um), StdDev = 6 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 37045 (-177.4 uncal um), Max = 37063 (-177.5 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 22:44:45.288 -07 000000459 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37053, posNoise = 10, negNoise = 8
17-03-17 22:44:45.288 -07 000000459 INF: Z Motor: After move to -0.178343, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:44:45.288 -07 000000459 INF: Z Motor: Settle wait time = 1437 ms, measure time = 102 ms (allowed 150 ms), total time = 1539 ms
17-03-17 22:44:45.288 -07 000000459 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 22:44:45.338 -07 000000459 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1591 ms
17-03-17 22:44:45.338 -07 000000459 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:44:45.338 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:44:45.338 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:44:45.338 -07 000000547 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:44:45.338 -07 000000486 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:44:45.338 -07 000000475 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:44:45.338 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:44:45.338 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:44:45.338 -07 000000475 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:44:45.348 -07 000000475 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-17 22:44:45.348 -07 000000475 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:44:45.358 -07 000000475 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 22:44:45.358 -07 000000475 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 22:44:45.358 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:44:45.408 -07 000000618 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:44:45.598 -07 000000576 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:44:45.608 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:44:45.608 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:44:45.608 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2403175240, 0x0, 559484976) start.
17-03-17 22:44:45.638 -07 000000433 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:44:45.648 -07 000000458 INF: FPGA: Recv CAMSNAP
17-03-17 22:44:45.648 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 284 ms overall
17-03-17 22:44:45.728 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2403175240, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 22:44:45.728 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:44:45.728 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 22:44:45.738 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 22:44:45.748 -07 000000433 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:44:45.748 -07 000000561 INF: Autofocus start
17-03-17 22:44:45.748 -07 000000561 INF: MeasureProfile start
17-03-17 22:44:45.748 -07 000000486 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:44:45.758 -07 000000433 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:44:45.758 -07 000000433 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:44:45.758 -07 000000561 INF: MeasureProfile done
17-03-17 22:44:45.758 -07 000000561 INF: X=0  Z correction [um]=-0.0713522
17-03-17 22:44:45.758 -07 000000561 INF: Autofocus finished
17-03-17 22:44:45.958 -07 000000551 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:44:45.958 -07 000000433 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:44:45.958 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.56396484375, Z-position -0.178359684499804. ----------
17-03-17 22:44:45.968 -07 000000610 INF: Cycle	67	Tile	3	Exposure Settings		A	459	G	221	T	221	C	459
17-03-17 22:44:45.968 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37456, sync = True, waitForSettling = True)
17-03-17 22:44:45.968 -07 000000610 INF: Z Motor: Moving to -0.171463 mm, started at -0.178360 mm, distance = 6.90 um
17-03-17 22:44:45.968 -07 000000610 INF: FPGA: Xmit ZDACW 37456\n [Z Motor]
17-03-17 22:44:45.968 -07 000000486 INF: FPGA: Recv ZDACW
17-03-17 22:44:45.978 -07 000000610 INF: FPGA: 'ZDACW 37456' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 22:44:45.978 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:44:45.978 -07 000000438 INF: FPGA: Recv ZDACR 37456
17-03-17 22:44:45.988 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:44:45.988 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:44:45.998 -07 000000551 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 67, FrontChillerTemperature: 3.983999,
17-03-17 22:44:46.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:44:46.138 -07 000000551 INF: FPGA: Recv ZSGSRD 35983
17-03-17 22:44:46.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:44:46.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:44:46.148 -07 000000547 INF: FPGA: Recv ZSGSRD 35977
17-03-17 22:44:46.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:44:46.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:44:46.158 -07 000000547 INF: FPGA: Recv ZSGSRD 35985
17-03-17 22:44:46.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:44:46.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:44:46.168 -07 000000561 INF: FPGA: Recv ZSGSRD 35986
17-03-17 22:44:46.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:44:46.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:44:46.178 -07 000000561 INF: FPGA: Recv ZSGSRD 35976
17-03-17 22:44:46.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:44:46.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:44:46.188 -07 000000551 INF: FPGA: Recv ZSGSRD 35983
17-03-17 22:44:46.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:44:46.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:44:46.198 -07 000000547 INF: FPGA: Recv ZSGSRD 35984
17-03-17 22:44:46.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:44:46.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:44:46.208 -07 000000547 INF: FPGA: Recv ZSGSRD 35980
17-03-17 22:44:46.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:44:46.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:44:46.218 -07 000000551 INF: FPGA: Recv ZSGSRD 35982
17-03-17 22:44:46.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:44:46.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:44:46.228 -07 000000627 INF: FPGA: Recv ZSGSRD 35978
17-03-17 22:44:46.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:44:46.238 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:44:46.238 -07 000000627 INF: FPGA: Recv ZPIEZORD 32013
17-03-17 22:44:46.248 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:44:46.248 -07 000000610 INF: Z Motor: Piezo is near 48.4 V (nominally 0 to 100 V), expect near 57.2 V, since DAC is at 5.715 V. Piezo Error = -8.8 V.
17-03-17 22:44:46.248 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.5 um, Read 10 ADC samples: Avg = 35981 (-170.6 uncal um), Error = 0.9 uncal um, Median = 35982 (-170.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35976 (-170.6 uncal um), Max = 35986 (-170.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 22:44:46.248 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35981, posNoise = 5, negNoise = 5
17-03-17 22:44:46.248 -07 000000610 INF: Z Motor: After move to -0.171463, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:44:46.248 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 22:44:46.248 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:44:46.248 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:44:46.248 -07 000000551 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:44:46.248 -07 000000547 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:44:46.248 -07 000000478 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:44:46.248 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:44:46.248 -07 000000627 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:44:46.248 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:44:46.258 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:44:46.258 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:44:46.258 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 8 ms.
17-03-17 22:44:46.258 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:44:46.258 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 22:44:46.258 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:44:46.258 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:44:46.258 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:44:46.268 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 22:44:46.268 -07 000000478 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 23 ms.
17-03-17 22:44:46.268 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 22:44:46.268 -07 000000627 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 22:44:46.278 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 459 459 221 221 37633 150\n [Camera]
17-03-17 22:44:46.478 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:44:46.938 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 651
17-03-17 22:44:46.938 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 651
17-03-17 22:44:46.938 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:44:46.938 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:44:46.938 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-17 22:44:46.938 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 651
17-03-17 22:44:46.938 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 651
17-03-17 22:44:46.938 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:44:46.938 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:44:46.938 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) start.
17-03-17 22:44:46.998 -07 000000478 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:44:46.998 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 66. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1047, R2=1076, Total=2123. Warn if over 250 bubbles per interval.
17-03-17 22:44:47.128 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37633 844
17-03-17 22:44:47.278 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning grn on 994
17-03-17 22:44:47.318 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) end. Duration was 376 ms.
17-03-17 22:44:47.318 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-17 22:44:47.318 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:44:47.318 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 22:44:47.318 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 22:44:47.318 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:44:47.318 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:44:47.318 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:44:47.318 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 22:44:47.328 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 22:44:47.498 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1215
17-03-17 22:44:47.498 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1215
17-03-17 22:44:47.498 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:44:47.498 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:44:47.498 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 2620985504, 0x0, 391868352) start.
17-03-17 22:44:47.498 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1215
17-03-17 22:44:47.498 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1215
17-03-17 22:44:47.498 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:44:47.498 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:44:47.498 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) start.
17-03-17 22:44:47.688 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP 1408
17-03-17 22:44:47.688 -07 000000459 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:44:47.688 -07 000000610 INF: FPGA: 'CAMDBLSNAP 459 459 221 221 37633 150' command took 2 ms to send, 1405 ms to get response, and 1415 ms overall
17-03-17 22:44:47.688 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 22:44:47.688 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.56396484375, Z-Position -0.171472929083836. ------
17-03-17 22:44:47.698 -07 000000459 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.17782 mm
17-03-17 22:44:47.698 -07 000000459 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:44:47.698 -07 000000551 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:44:47.698 -07 000000627 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-17 22:44:47.698 -07 000000627 INF: Y Motor: Moving to 62.4026 mm, started at 61.5640 mm, delta = 0.8386 mm
17-03-17 22:44:47.698 -07 000000561 INF: Z Motor: Entering MoveAbsStepped (DAC = 38845, sync = True, waitForSettling = False)
17-03-17 22:44:47.698 -07 000000561 INF: Z Motor: Moving to -0.177821 mm, started at -0.171473 mm, distance = -6.35 um
17-03-17 22:44:47.698 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:44:47.708 -07 000000551 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:44:47.708 -07 000000561 INF: FPGA: Xmit ZDACW 38845\n [Z Motor]
17-03-17 22:44:47.708 -07 000000486 INF: FPGA: Recv ZDACW
17-03-17 22:44:47.718 -07 000000561 INF: FPGA: 'ZDACW 38845' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 22:44:47.718 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:44:47.718 -07 000000618 INF: FPGA: Recv YRDPOS 126083
17-03-17 22:44:47.728 -07 000000551 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:44:47.728 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-17 22:44:47.728 -07 000000627 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:44:47.728 -07 000000627 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:44:47.728 -07 000000627 INF: Y Motor: Moving 1342 steps-18
17-03-17 22:44:47.738 -07 000000561 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:44:47.738 -07 000000429 INF: FPGA: Recv ZDACR 38845
17-03-17 22:44:47.748 -07 000000627 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:44:47.748 -07 000000561 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:44:47.748 -07 000000561 INF: Z Motor: MoveAbsStepped took 42 ms (did NOT wait for settling yet))
17-03-17 22:44:47.878 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 2620985504, 0x0, 391868352) end. Duration was 382 ms.
17-03-17 22:44:47.878 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 22:44:47.878 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:44:47.878 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) end. Duration was 380 ms.
17-03-17 22:44:47.878 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-17 22:44:47.878 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:44:47.888 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:44:47.888 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 22:44:47.888 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 22:44:47.888 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 22:44:47.928 -07 000000482 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:44:47.928 -07 000000551 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 22:44:48.118 -07 000000433 INF: FPGA: Recv YMVTILE
17-03-17 22:44:48.118 -07 000000627 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 22:44:48.158 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:44:48.168 -07 000000482 INF: FPGA: Recv YRDPOS 127786
17-03-17 22:44:48.168 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 22:44:48.168 -07 000000627 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:44:48.168 -07 000000627 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-17 22:44:48.168 -07 000000627 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.839 mm, average velocity = 2.112 mm/sec
17-03-17 22:44:49.118 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:44:49.118 -07 000000547 INF: FPGA: Recv YRDPOS 127786
17-03-17 22:44:49.128 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:44:49.128 -07 000000627 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:44:49.148 -07 000000627 INF: Y Motor: After move to 62.402607, error = -0.007099, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:44:49.148 -07 000000627 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:44:49.148 -07 000000627 INF: Y Motor: Moved to 62.3955 after 1450 ms (table move)
17-03-17 22:44:49.148 -07 000000459 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177821 mm (DAC = 38845)
17-03-17 22:44:49.148 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:44:49.158 -07 000000429 INF: FPGA: Recv ZSGSRD 36977
17-03-17 22:44:49.158 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 22:44:49.158 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:44:49.158 -07 000000486 INF: FPGA: Recv ZSGSRD 36970
17-03-17 22:44:49.168 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:44:49.168 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:44:49.168 -07 000000429 INF: FPGA: Recv ZSGSRD 36972
17-03-17 22:44:49.178 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:44:49.178 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:44:49.178 -07 000000576 INF: FPGA: Recv ZSGSRD 36973
17-03-17 22:44:49.188 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:44:49.188 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:44:49.188 -07 000000433 INF: FPGA: Recv ZSGSRD 36974
17-03-17 22:44:49.198 -07 000000459 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:44:49.198 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:44:49.198 -07 000000618 INF: FPGA: Recv ZSGSRD 36977
17-03-17 22:44:49.208 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:44:49.208 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:44:49.208 -07 000000433 INF: FPGA: Recv ZSGSRD 36969
17-03-17 22:44:49.218 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:44:49.218 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:44:49.218 -07 000000576 INF: FPGA: Recv ZSGSRD 36965
17-03-17 22:44:49.228 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:44:49.228 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:44:49.228 -07 000000486 INF: FPGA: Recv ZSGSRD 36970
17-03-17 22:44:49.238 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:44:49.238 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:44:49.238 -07 000000576 INF: FPGA: Recv ZSGSRD 36973
17-03-17 22:44:49.248 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:44:49.248 -07 000000459 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:44:49.248 -07 000000627 INF: FPGA: Recv ZPIEZORD 33353
17-03-17 22:44:49.258 -07 000000459 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:44:49.258 -07 000000459 INF: Z Motor: Piezo is near 51.3 V (nominally 0 to 100 V), expect near 59.3 V, since DAC is at 5.927 V. Piezo Error = -8.0 V.
17-03-17 22:44:49.258 -07 000000459 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.8 um, Read 10 ADC samples: Avg = 36972 (-176.9 uncal um), Error = 0.9 uncal um, Median = 36972 (-176.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36965 (-176.9 uncal um), Max = 36977 (-177.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 22:44:49.258 -07 000000459 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36972, posNoise = 5, negNoise = 7
17-03-17 22:44:49.258 -07 000000459 INF: Z Motor: After move to -0.177821, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:44:49.258 -07 000000459 INF: Z Motor: Settle wait time = 1449 ms, measure time = 103 ms (allowed 150 ms), total time = 1552 ms
17-03-17 22:44:49.258 -07 000000459 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 22:44:49.308 -07 000000459 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1609 ms
17-03-17 22:44:49.308 -07 000000459 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:44:49.308 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:44:49.308 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:44:49.308 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:44:49.308 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:44:49.308 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:44:49.308 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:44:49.308 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 3 ms.
17-03-17 22:44:49.318 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:44:49.318 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:44:49.318 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:44:49.328 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 22:44:49.328 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-17 22:44:49.328 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:44:49.378 -07 000000486 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:44:49.578 -07 000000618 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:44:49.578 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:44:49.578 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:44:49.578 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2656407768, 0x0, 559484976) start.
17-03-17 22:44:49.618 -07 000000458 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:44:49.618 -07 000000433 INF: FPGA: Recv CAMSNAP
17-03-17 22:44:49.618 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 284 ms overall
17-03-17 22:44:49.688 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2656407768, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 22:44:49.688 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:44:49.688 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 22:44:49.688 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 22:44:49.718 -07 000000429 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:44:49.718 -07 000000576 INF: Autofocus start
17-03-17 22:44:49.718 -07 000000576 INF: MeasureProfile start
17-03-17 22:44:49.718 -07 000000551 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:44:49.728 -07 000000429 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:44:49.728 -07 000000429 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:44:49.738 -07 000000576 INF: MeasureProfile done
17-03-17 22:44:49.738 -07 000000576 INF: X=16  Z correction [um]=0.01042744
17-03-17 22:44:49.738 -07 000000576 INF: Autofocus finished
17-03-17 22:44:49.928 -07 000000486 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:44:49.928 -07 000000429 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:44:49.928 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.3955078125, Z-position -0.177839323316321. ----------
17-03-17 22:44:49.928 -07 000000610 INF: Cycle	67	Tile	4	Exposure Settings		A	459	G	221	T	221	C	459
17-03-17 22:44:49.938 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37359, sync = True, waitForSettling = True)
17-03-17 22:44:49.938 -07 000000610 INF: Z Motor: Moving to -0.171019 mm, started at -0.177839 mm, distance = 6.82 um
17-03-17 22:44:49.938 -07 000000610 INF: FPGA: Xmit ZDACW 37359\n [Z Motor]
17-03-17 22:44:49.938 -07 000000486 INF: FPGA: Recv ZDACW
17-03-17 22:44:49.948 -07 000000610 INF: FPGA: 'ZDACW 37359' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:44:49.948 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:44:49.948 -07 000000561 INF: FPGA: Recv ZDACR 37359
17-03-17 22:44:49.958 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:44:49.958 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:44:50.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:44:50.108 -07 000000459 INF: FPGA: Recv ZSGSRD 35909
17-03-17 22:44:50.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:44:50.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:44:50.118 -07 000000547 INF: FPGA: Recv ZSGSRD 35918
17-03-17 22:44:50.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:44:50.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:44:50.128 -07 000000433 INF: FPGA: Recv ZSGSRD 35913
17-03-17 22:44:50.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:44:50.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:44:50.138 -07 000000482 INF: FPGA: Recv ZSGSRD 35903
17-03-17 22:44:50.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:44:50.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:44:50.148 -07 000000478 INF: FPGA: Recv ZSGSRD 35913
17-03-17 22:44:50.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:44:50.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:44:50.158 -07 000000547 INF: FPGA: Recv ZSGSRD 35920
17-03-17 22:44:50.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:44:50.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:44:50.168 -07 000000433 INF: FPGA: Recv ZSGSRD 35918
17-03-17 22:44:50.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:44:50.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:44:50.178 -07 000000482 INF: FPGA: Recv ZSGSRD 35908
17-03-17 22:44:50.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:44:50.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:44:50.188 -07 000000561 INF: FPGA: Recv ZSGSRD 35914
17-03-17 22:44:50.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:44:50.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:44:50.198 -07 000000458 INF: FPGA: Recv ZSGSRD 35919
17-03-17 22:44:50.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:44:50.208 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:44:50.208 -07 000000459 INF: FPGA: Recv ZPIEZORD 31911
17-03-17 22:44:50.218 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:44:50.218 -07 000000610 INF: Z Motor: Piezo is near 48.2 V (nominally 0 to 100 V), expect near 57.0 V, since DAC is at 5.701 V. Piezo Error = -8.8 V.
17-03-17 22:44:50.218 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.0 um, Read 10 ADC samples: Avg = 35914 (-170.2 uncal um), Error = 0.9 uncal um, Median = 35914 (-170.2 uncal um), StdDev = 6 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 35903 (-170.1 uncal um), Max = 35920 (-170.2 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 11 (0.1 uncal um)
17-03-17 22:44:50.218 -07 000000610 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35914, posNoise = 6, negNoise = 11
17-03-17 22:44:50.218 -07 000000610 INF: Z Motor: After move to -0.171019, error = -0.000024, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:44:50.218 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 22:44:50.218 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:44:50.218 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:44:50.218 -07 000000458 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:44:50.218 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:44:50.218 -07 000000478 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:44:50.218 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:44:50.218 -07 000000482 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:44:50.218 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:44:50.218 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:44:50.218 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:44:50.218 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:44:50.218 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:44:50.228 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:44:50.228 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:44:50.228 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:44:50.228 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:44:50.238 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 22:44:50.238 -07 000000478 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 22:44:50.238 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 22:44:50.238 -07 000000482 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 22:44:50.238 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 459 459 221 221 37536 150\n [Camera]
17-03-17 22:44:50.438 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:44:50.898 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 651
17-03-17 22:44:50.898 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 651
17-03-17 22:44:50.898 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:44:50.898 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:44:50.898 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2719780968, 0x0, 391868352) start.
17-03-17 22:44:50.898 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 651
17-03-17 22:44:50.898 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 651
17-03-17 22:44:50.898 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:44:50.898 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:44:50.898 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2755203232, 0x0, 418435064) start.
17-03-17 22:44:51.088 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37536 844
17-03-17 22:44:51.238 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP turning grn on 994
17-03-17 22:44:51.278 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2719780968, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 22:44:51.278 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-17 22:44:51.278 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:44:51.278 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2755203232, 0x0, 418435064) end. Duration was 376 ms.
17-03-17 22:44:51.278 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-17 22:44:51.278 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:44:51.278 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:44:51.278 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 22:44:51.278 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:44:51.288 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 22:44:51.438 -07 000000482 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 67, FrontChillerTemperature: 4.001704,
17-03-17 22:44:51.468 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1215
17-03-17 22:44:51.468 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1215
17-03-17 22:44:51.468 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:44:51.468 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1215
17-03-17 22:44:51.468 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1215
17-03-17 22:44:51.468 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:44:51.468 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:44:51.468 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 22:44:51.478 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:44:51.478 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-17 22:44:51.658 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP 1411
17-03-17 22:44:51.658 -07 000000482 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:44:51.658 -07 000000610 INF: FPGA: 'CAMDBLSNAP 459 459 221 221 37536 150' command took 2 ms to send, 1412 ms to get response, and 1418 ms overall
17-03-17 22:44:51.658 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 22:44:51.658 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.3955078125, Z-Position -0.171042506870338. ------
17-03-17 22:44:51.658 -07 000000482 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:44:51.868 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 399 ms.
17-03-17 22:44:51.868 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 22:44:51.868 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:44:51.878 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 396 ms.
17-03-17 22:44:51.878 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 22:44:51.878 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:44:51.878 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:44:51.878 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-17 22:44:51.878 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:44:51.888 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-17 22:44:51.888 -07 000000627 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:44:51.888 -07 000000482 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 227 ms to get response, and 228 ms overall
17-03-17 22:44:51.888 -07 000000482 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:44:51.888 -07 000000475 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.17763 mm
17-03-17 22:44:51.888 -07 000000475 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:44:51.898 -07 000000478 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-17 22:44:51.898 -07 000000551 INF: Z Motor: Entering MoveAbsStepped (DAC = 38803, sync = True, waitForSettling = False)
17-03-17 22:44:51.898 -07 000000551 INF: Z Motor: Moving to -0.177629 mm, started at -0.171043 mm, distance = -6.59 um
17-03-17 22:44:51.898 -07 000000551 INF: FPGA: Xmit ZDACW 38803\n [Z Motor]
17-03-17 22:44:51.898 -07 000000478 INF: Y Motor: Moving to 63.2326 mm, started at 62.3955 mm, delta = 0.8371 mm
17-03-17 22:44:51.898 -07 000000576 INF: FPGA: Recv ZDACW
17-03-17 22:44:51.908 -07 000000551 INF: FPGA: 'ZDACW 38803' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:44:51.908 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:44:51.908 -07 000000627 INF: FPGA: Recv YRDPOS 127786
17-03-17 22:44:51.918 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-17 22:44:51.918 -07 000000478 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:44:51.918 -07 000000478 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:44:51.918 -07 000000478 INF: Y Motor: Moving 1339 steps-15
17-03-17 22:44:51.918 -07 000000551 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:44:51.918 -07 000000486 INF: FPGA: Recv ZDACR 38803
17-03-17 22:44:51.928 -07 000000551 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:44:51.928 -07 000000478 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:44:51.928 -07 000000551 INF: Z Motor: MoveAbsStepped took 28 ms (did NOT wait for settling yet))
17-03-17 22:44:51.998 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:44:51.998 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 66. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1047, R2=1076, Total=2123. Warn if over 250 bubbles per interval.
17-03-17 22:44:52.098 -07 000000459 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:44:52.098 -07 000000482 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 200 ms to get response, and 202 ms overall
17-03-17 22:44:52.298 -07 000000547 INF: FPGA: Recv YMVTILE
17-03-17 22:44:52.298 -07 000000478 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-17 22:44:52.338 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:44:52.338 -07 000000547 INF: FPGA: Recv YRDPOS 129483
17-03-17 22:44:52.348 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:44:52.348 -07 000000478 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:44:52.348 -07 000000478 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-17 22:44:52.348 -07 000000478 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.837 mm, average velocity = 2.157 mm/sec
17-03-17 22:44:53.298 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:44:53.298 -07 000000561 INF: FPGA: Recv YRDPOS 129483
17-03-17 22:44:53.308 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:44:53.308 -07 000000478 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:44:53.328 -07 000000478 INF: Y Motor: After move to 63.232609, error = -0.008488, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:44:53.328 -07 000000478 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:44:53.328 -07 000000478 INF: Y Motor: Moved to 63.2241 after 1434 ms (table move)
17-03-17 22:44:53.338 -07 000000475 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177629 mm (DAC = 38803)
17-03-17 22:44:53.338 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:44:53.338 -07 000000438 INF: FPGA: Recv ZSGSRD 36942
17-03-17 22:44:53.348 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:44:53.348 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:44:53.348 -07 000000627 INF: FPGA: Recv ZSGSRD 36938
17-03-17 22:44:53.358 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:44:53.358 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:44:53.358 -07 000000459 INF: FPGA: Recv ZSGSRD 36941
17-03-17 22:44:53.368 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:44:53.368 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:44:53.368 -07 000000478 INF: FPGA: Recv ZSGSRD 36942
17-03-17 22:44:53.378 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:44:53.378 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:44:53.378 -07 000000482 INF: FPGA: Recv ZSGSRD 36945
17-03-17 22:44:53.388 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:44:53.388 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:44:53.388 -07 000000561 INF: FPGA: Recv ZSGSRD 36944
17-03-17 22:44:53.398 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:44:53.398 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:44:53.398 -07 000000486 INF: FPGA: Recv ZSGSRD 36939
17-03-17 22:44:53.408 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:44:53.408 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:44:53.408 -07 000000561 INF: FPGA: Recv ZSGSRD 36936
17-03-17 22:44:53.418 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:44:53.418 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:44:53.418 -07 000000482 INF: FPGA: Recv ZSGSRD 36932
17-03-17 22:44:53.428 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:44:53.428 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:44:53.428 -07 000000547 INF: FPGA: Recv ZSGSRD 36939
17-03-17 22:44:53.438 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:44:53.438 -07 000000475 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:44:53.438 -07 000000482 INF: FPGA: Recv ZPIEZORD 33309
17-03-17 22:44:53.448 -07 000000475 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:44:53.448 -07 000000475 INF: Z Motor: Piezo is near 51.2 V (nominally 0 to 100 V), expect near 59.2 V, since DAC is at 5.921 V. Piezo Error = -8.1 V.
17-03-17 22:44:53.448 -07 000000475 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.6 um, Read 10 ADC samples: Avg = 36940 (-176.7 uncal um), Error = 0.9 uncal um, Median = 36940 (-176.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36932 (-176.7 uncal um), Max = 36945 (-176.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 22:44:53.448 -07 000000475 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36940, posNoise = 5, negNoise = 8
17-03-17 22:44:53.448 -07 000000475 INF: Z Motor: After move to -0.177629, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:44:53.448 -07 000000475 INF: Z Motor: Settle wait time = 1439 ms, measure time = 110 ms (allowed 150 ms), total time = 1549 ms
17-03-17 22:44:53.448 -07 000000475 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-17 22:44:53.488 -07 000000475 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1591 ms
17-03-17 22:44:53.488 -07 000000475 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:44:53.488 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:44:53.488 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:44:53.488 -07 000000551 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:44:53.488 -07 000000486 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:44:53.488 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:44:53.488 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:44:53.488 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:44:53.488 -07 000000486 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:44:53.498 -07 000000486 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 22:44:53.498 -07 000000486 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:44:53.498 -07 000000486 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 22:44:53.498 -07 000000486 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-17 22:44:53.508 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:44:53.548 -07 000000475 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:44:53.748 -07 000000438 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:44:53.748 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:44:53.748 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:44:53.758 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1130172064, 0x0, 559484976) start.
17-03-17 22:44:53.788 -07 000000482 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:44:53.788 -07 000000561 INF: FPGA: Recv CAMSNAP
17-03-17 22:44:53.788 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 284 ms overall
17-03-17 22:44:53.868 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1130172064, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 22:44:53.868 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:44:53.868 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:44:53.868 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 120 ms.
17-03-17 22:44:53.888 -07 000000429 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:44:53.888 -07 000000459 INF: Autofocus start
17-03-17 22:44:53.888 -07 000000459 INF: MeasureProfile start
17-03-17 22:44:53.898 -07 000000475 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:44:53.898 -07 000000429 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:44:53.898 -07 000000429 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:44:53.908 -07 000000459 INF: MeasureProfile done
17-03-17 22:44:53.908 -07 000000459 INF: X=0  Z correction [um]=-0.0713522
17-03-17 22:44:53.908 -07 000000459 INF: Autofocus finished
17-03-17 22:44:54.098 -07 000000482 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:44:54.098 -07 000000429 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:44:54.108 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.22412109375, Z-position -0.177633748527785. ----------
17-03-17 22:44:54.108 -07 000000610 INF: Cycle	67	Tile	5	Exposure Settings		A	459	G	221	T	221	C	459
17-03-17 22:44:54.108 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37300, sync = True, waitForSettling = True)
17-03-17 22:44:54.108 -07 000000610 INF: Z Motor: Moving to -0.170748 mm, started at -0.177634 mm, distance = 6.89 um
17-03-17 22:44:54.108 -07 000000610 INF: FPGA: Xmit ZDACW 37300\n [Z Motor]
17-03-17 22:44:54.108 -07 000000482 INF: FPGA: Recv ZDACW
17-03-17 22:44:54.118 -07 000000610 INF: FPGA: 'ZDACW 37300' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:44:54.118 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:44:54.118 -07 000000561 INF: FPGA: Recv ZDACR 37300
17-03-17 22:44:54.128 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:44:54.128 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:44:54.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:44:54.278 -07 000000576 INF: FPGA: Recv ZSGSRD 35866
17-03-17 22:44:54.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:44:54.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:44:54.288 -07 000000627 INF: FPGA: Recv ZSGSRD 35876
17-03-17 22:44:54.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:44:54.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:44:54.298 -07 000000482 INF: FPGA: Recv ZSGSRD 35874
17-03-17 22:44:54.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:44:54.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:44:54.308 -07 000000551 INF: FPGA: Recv ZSGSRD 35869
17-03-17 22:44:54.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:44:54.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:44:54.318 -07 000000438 INF: FPGA: Recv ZSGSRD 35868
17-03-17 22:44:54.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:44:54.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:44:54.328 -07 000000618 INF: FPGA: Recv ZSGSRD 35869
17-03-17 22:44:54.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:44:54.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:44:54.338 -07 000000482 INF: FPGA: Recv ZSGSRD 35871
17-03-17 22:44:54.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:44:54.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:44:54.348 -07 000000459 INF: FPGA: Recv ZSGSRD 35869
17-03-17 22:44:54.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:44:54.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:44:54.358 -07 000000576 INF: FPGA: Recv ZSGSRD 35873
17-03-17 22:44:54.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:44:54.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:44:54.368 -07 000000627 INF: FPGA: Recv ZSGSRD 35872
17-03-17 22:44:54.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:44:54.378 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:44:54.378 -07 000000433 INF: FPGA: Recv ZPIEZORD 31863
17-03-17 22:44:54.388 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:44:54.388 -07 000000610 INF: Z Motor: Piezo is near 48.1 V (nominally 0 to 100 V), expect near 56.9 V, since DAC is at 5.692 V. Piezo Error = -8.8 V.
17-03-17 22:44:54.388 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.7 um, Read 10 ADC samples: Avg = 35871 (-169.9 uncal um), Error = 0.9 uncal um, Median = 35870 (-169.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35866 (-169.9 uncal um), Max = 35876 (-169.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 22:44:54.388 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35871, posNoise = 5, negNoise = 5
17-03-17 22:44:54.388 -07 000000610 INF: Z Motor: After move to -0.170748, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:44:54.388 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 22:44:54.388 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:44:54.388 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:44:54.388 -07 000000551 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:44:54.388 -07 000000478 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:44:54.388 -07 000000433 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:44:54.388 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:44:54.388 -07 000000486 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:44:54.388 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:44:54.388 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:44:54.388 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:44:54.388 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:44:54.388 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:44:54.398 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 22:44:54.398 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:44:54.398 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:44:54.398 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:44:54.408 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 22:44:54.408 -07 000000433 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 22:44:54.418 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 22:44:54.418 -07 000000486 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 23 ms.
17-03-17 22:44:54.418 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 459 459 221 221 37476 150\n [Camera]
17-03-17 22:44:54.618 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:44:55.078 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 651
17-03-17 22:44:55.078 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 651
17-03-17 22:44:55.078 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:44:55.078 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 651
17-03-17 22:44:55.078 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 651
17-03-17 22:44:55.198 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:44:55.198 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 22:44:55.198 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:44:55.208 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:44:55.208 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-17 22:44:55.598 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 394 ms.
17-03-17 22:44:55.598 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 22:44:55.598 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:44:55.598 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 392 ms.
17-03-17 22:44:55.598 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 22:44:55.598 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:44:55.598 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:44:55.598 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 521 ms.
17-03-17 22:44:55.598 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:44:55.608 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-17 22:44:55.608 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37476 844
17-03-17 22:44:55.608 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP turning grn on 994
17-03-17 22:44:55.638 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1215
17-03-17 22:44:55.638 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1215
17-03-17 22:44:55.638 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:44:55.648 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1215
17-03-17 22:44:55.648 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1215
17-03-17 22:44:55.648 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:44:55.648 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:44:55.648 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-17 22:44:55.648 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:44:55.648 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 1144848144, 0x0, 418435064) start.
17-03-17 22:44:56.038 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 1144848144, 0x0, 418435064) end. Duration was 385 ms.
17-03-17 22:44:56.038 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-17 22:44:56.038 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:44:56.038 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 392 ms.
17-03-17 22:44:56.038 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 22:44:56.038 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:44:56.038 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:44:56.048 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:44:56.048 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 22:44:56.048 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-17 22:44:56.058 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP 1408
17-03-17 22:44:56.058 -07 000000429 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:44:56.058 -07 000000610 INF: FPGA: 'CAMDBLSNAP 459 459 221 221 37476 150' command took 3 ms to send, 1631 ms to get response, and 1638 ms overall
17-03-17 22:44:56.058 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 22:44:56.058 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.22412109375, Z-Position -0.170766265748242. ------
17-03-17 22:44:56.058 -07 000000478 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.17715 mm
17-03-17 22:44:56.068 -07 000000478 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:44:56.078 -07 000000429 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:44:56.728 -07 000000458 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-17 22:44:56.728 -07 000000458 INF: Y Motor: Moving to 64.0626 mm, started at 63.2241 mm, delta = 0.8385 mm
17-03-17 22:44:56.728 -07 000000458 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:44:57.748 -07 000000433 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:44:57.748 -07 000000433 INF: FPGA: Recv YRDPOS 129484
17-03-17 22:44:57.748 -07 000000433 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:44:57.748 -07 000000458 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1012 ms to get response, and 1020 ms overall
17-03-17 22:44:57.748 -07 000000458 INF: Y Motor: Encoder = 129484 = motor step 101159.4 = 63.2246 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:44:57.748 -07 000000429 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1661 ms to get response, and 1682 ms overall
17-03-17 22:44:57.748 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 66. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1047, R2=1076, Total=2123. Warn if over 250 bubbles per interval.
17-03-17 22:44:57.748 -07 000000433 INF: Z Motor: Entering MoveAbsStepped (DAC = 38699, sync = True, waitForSettling = False)
17-03-17 22:44:57.748 -07 000000433 INF: Z Motor: Moving to -0.177153 mm, started at -0.170766 mm, distance = -6.39 um
17-03-17 22:44:57.758 -07 000000429 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:44:57.758 -07 000000458 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:44:57.758 -07 000000458 INF: Y Motor: Moving 1341 steps-17
17-03-17 22:44:57.768 -07 000000458 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:44:57.778 -07 000000433 INF: FPGA: Xmit ZDACW 38699\n [Z Motor]
17-03-17 22:44:58.728 -07 000000475 INF: FPGA: Recv ZDACW
17-03-17 22:44:58.728 -07 000000475 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:44:58.728 -07 000000475 INF: FPGA: Recv YMVTILE
17-03-17 22:44:58.728 -07 000000458 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 950 ms to get response, and 967 ms overall
17-03-17 22:44:58.728 -07 000000433 INF: FPGA: 'ZDACW 38699' command took 0 ms to send, 940 ms to get response, and 972 ms overall
17-03-17 22:44:58.728 -07 000000433 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:44:58.728 -07 000000429 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 960 ms to get response, and 976 ms overall
17-03-17 22:44:58.728 -07 000000475 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 67, FrontChillerTemperature: 4.018051,
17-03-17 22:44:58.728 -07 000000475 INF: FPGA: Recv ZDACR 38699
17-03-17 22:44:58.738 -07 000000433 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:44:58.738 -07 000000433 INF: Z Motor: MoveAbsStepped took 984 ms (did NOT wait for settling yet))
17-03-17 22:44:58.788 -07 000000458 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:44:58.788 -07 000000433 INF: FPGA: Recv YRDPOS 131189
17-03-17 22:44:58.798 -07 000000458 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-17 22:44:58.798 -07 000000458 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:44:58.798 -07 000000458 INF: Y Motor: Position error before settling (table move) = -11 encoder counts (-0.005 mm)
17-03-17 22:44:58.798 -07 000000458 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 968 ms, distance = 0.838 mm, average velocity = 0.866 mm/sec
17-03-17 22:44:59.748 -07 000000458 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:44:59.748 -07 000000618 INF: FPGA: Recv YRDPOS 131189
17-03-17 22:44:59.758 -07 000000458 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:44:59.758 -07 000000458 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:44:59.778 -07 000000458 INF: Y Motor: After move to 64.062607, error = -0.005478, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:44:59.778 -07 000000458 INF: Y Motor: Position error after settling (table move) = -11 encoder counts (-0.005 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:44:59.778 -07 000000458 INF: Y Motor: Moved to 64.0571 after 3051 ms (table move)
17-03-17 22:44:59.778 -07 000000478 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177153 mm (DAC = 38699)
17-03-17 22:44:59.778 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:44:59.778 -07 000000547 INF: FPGA: Recv ZSGSRD 36870
17-03-17 22:44:59.788 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 22:44:59.788 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:44:59.788 -07 000000547 INF: FPGA: Recv ZSGSRD 36860
17-03-17 22:44:59.798 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:44:59.798 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:44:59.798 -07 000000429 INF: FPGA: Recv ZSGSRD 36869
17-03-17 22:44:59.808 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:44:59.808 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:44:59.808 -07 000000475 INF: FPGA: Recv ZSGSRD 36866
17-03-17 22:44:59.818 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:44:59.818 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:44:59.818 -07 000000438 INF: FPGA: Recv ZSGSRD 36861
17-03-17 22:44:59.828 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:44:59.828 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:44:59.828 -07 000000547 INF: FPGA: Recv ZSGSRD 36869
17-03-17 22:44:59.838 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:44:59.838 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:44:59.838 -07 000000618 INF: FPGA: Recv ZSGSRD 36869
17-03-17 22:44:59.848 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:44:59.848 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:44:59.848 -07 000000458 INF: FPGA: Recv ZSGSRD 36862
17-03-17 22:44:59.858 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:44:59.858 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:44:59.858 -07 000000618 INF: FPGA: Recv ZSGSRD 36867
17-03-17 22:44:59.868 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:44:59.868 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:44:59.868 -07 000000459 INF: FPGA: Recv ZSGSRD 36868
17-03-17 22:44:59.878 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:44:59.878 -07 000000478 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:44:59.878 -07 000000458 INF: FPGA: Recv ZPIEZORD 33186
17-03-17 22:44:59.888 -07 000000478 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:44:59.888 -07 000000478 INF: Z Motor: Piezo is near 50.9 V (nominally 0 to 100 V), expect near 59.1 V, since DAC is at 5.905 V. Piezo Error = -8.2 V.
17-03-17 22:44:59.888 -07 000000478 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.2 um, Read 10 ADC samples: Avg = 36866 (-176.3 uncal um), Error = 0.9 uncal um, Median = 36868 (-176.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 36860 (-176.2 uncal um), Max = 36870 (-176.3 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 22:44:59.888 -07 000000478 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36866, posNoise = 4, negNoise = 6
17-03-17 22:44:59.888 -07 000000478 INF: Z Motor: After move to -0.177153, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:44:59.888 -07 000000478 INF: Z Motor: Settle wait time = 2028 ms, measure time = 104 ms (allowed 150 ms), total time = 2132 ms
17-03-17 22:44:59.888 -07 000000478 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 22:44:59.938 -07 000000478 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 3870 ms
17-03-17 22:44:59.938 -07 000000478 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:44:59.938 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:44:59.938 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:44:59.938 -07 000000458 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:44:59.938 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:44:59.938 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:44:59.938 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:44:59.938 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:44:59.938 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:44:59.948 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 22:44:59.948 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:44:59.958 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 22:44:59.958 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 22:44:59.958 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:45:00.008 -07 000000475 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:45:00.208 -07 000000475 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:45:00.208 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:45:00.208 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:45:00.208 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1130172064, 0x0, 559484976) start.
17-03-17 22:45:00.248 -07 000000458 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:45:00.248 -07 000000478 INF: FPGA: Recv CAMSNAP
17-03-17 22:45:00.248 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 283 ms to get response, and 286 ms overall
17-03-17 22:45:00.338 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1130172064, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 22:45:00.338 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:45:00.338 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:45:00.338 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 22:45:00.348 -07 000000459 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:45:00.348 -07 000000429 INF: Autofocus start
17-03-17 22:45:00.348 -07 000000429 INF: MeasureProfile start
17-03-17 22:45:00.348 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:45:00.358 -07 000000459 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:45:00.358 -07 000000459 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:45:00.358 -07 000000429 INF: MeasureProfile done
17-03-17 22:45:00.358 -07 000000429 INF: X=0  Z correction [um]=-0.0713522
17-03-17 22:45:00.358 -07 000000429 INF: Autofocus finished
17-03-17 22:45:00.558 -07 000000547 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:45:00.558 -07 000000459 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:45:00.558 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.05712890625, Z-position -0.177158356829294. ----------
17-03-17 22:45:00.558 -07 000000610 INF: Cycle	67	Tile	6	Exposure Settings		A	459	G	221	T	221	C	459
17-03-17 22:45:00.568 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37196, sync = True, waitForSettling = True)
17-03-17 22:45:00.568 -07 000000610 INF: Z Motor: Moving to -0.170272 mm, started at -0.177158 mm, distance = 6.89 um
17-03-17 22:45:00.568 -07 000000610 INF: FPGA: Xmit ZDACW 37196\n [Z Motor]
17-03-17 22:45:00.568 -07 000000561 INF: FPGA: Recv ZDACW
17-03-17 22:45:00.578 -07 000000610 INF: FPGA: 'ZDACW 37196' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:00.578 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:45:00.578 -07 000000561 INF: FPGA: Recv ZDACR 37196
17-03-17 22:45:00.588 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:00.588 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:45:00.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:00.738 -07 000000561 INF: FPGA: Recv ZSGSRD 35794
17-03-17 22:45:00.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:45:00.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:00.748 -07 000000561 INF: FPGA: Recv ZSGSRD 35801
17-03-17 22:45:00.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:00.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:00.758 -07 000000438 INF: FPGA: Recv ZSGSRD 35798
17-03-17 22:45:00.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:00.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:00.768 -07 000000429 INF: FPGA: Recv ZSGSRD 35791
17-03-17 22:45:00.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:00.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:00.778 -07 000000561 INF: FPGA: Recv ZSGSRD 35797
17-03-17 22:45:00.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:00.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:00.788 -07 000000429 INF: FPGA: Recv ZSGSRD 35793
17-03-17 22:45:00.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:00.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:00.798 -07 000000561 INF: FPGA: Recv ZSGSRD 35796
17-03-17 22:45:00.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:00.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:00.808 -07 000000547 INF: FPGA: Recv ZSGSRD 35791
17-03-17 22:45:00.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:00.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:00.818 -07 000000618 INF: FPGA: Recv ZSGSRD 35796
17-03-17 22:45:00.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:00.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:00.828 -07 000000547 INF: FPGA: Recv ZSGSRD 35800
17-03-17 22:45:00.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:00.838 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:45:00.838 -07 000000618 INF: FPGA: Recv ZPIEZORD 31750
17-03-17 22:45:00.848 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:00.848 -07 000000610 INF: Z Motor: Piezo is near 47.8 V (nominally 0 to 100 V), expect near 56.8 V, since DAC is at 5.676 V. Piezo Error = -8.9 V.
17-03-17 22:45:00.848 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.3 um, Read 10 ADC samples: Avg = 35796 (-169.4 uncal um), Error = 0.9 uncal um, Median = 35796 (-169.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35791 (-169.4 uncal um), Max = 35801 (-169.4 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 22:45:00.848 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35796, posNoise = 5, negNoise = 5
17-03-17 22:45:00.848 -07 000000610 INF: Z Motor: After move to -0.170272, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:45:00.848 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 22:45:00.848 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:45:00.848 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:45:00.848 -07 000000458 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:45:00.848 -07 000000429 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:45:00.848 -07 000000475 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:45:00.848 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:45:00.848 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:45:00.848 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:45:00.848 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:45:00.848 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:45:00.848 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:45:00.848 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:45:00.848 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 22:45:00.848 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:45:00.858 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 22:45:00.858 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:45:00.868 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 22:45:00.868 -07 000000475 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 22:45:00.868 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 22:45:00.868 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 22:45:00.868 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 459 459 221 221 37373 150\n [Camera]
17-03-17 22:45:01.068 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:45:01.528 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 651
17-03-17 22:45:01.528 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 651
17-03-17 22:45:01.528 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:45:01.538 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 651
17-03-17 22:45:01.538 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 651
17-03-17 22:45:01.538 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:45:01.538 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:45:01.538 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 22:45:01.538 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:45:01.538 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-17 22:45:01.728 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37373 844
17-03-17 22:45:01.878 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning grn on 994
17-03-17 22:45:01.918 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 372 ms.
17-03-17 22:45:01.918 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-17 22:45:01.918 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:45:01.918 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 373 ms.
17-03-17 22:45:01.918 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-17 22:45:01.918 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:45:01.918 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 22:45:01.918 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:45:01.918 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 22:45:01.928 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 22:45:01.998 -07 000000433 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:45:01.998 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 66. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1047, R2=1076, Total=2123. Warn if over 250 bubbles per interval.
17-03-17 22:45:02.098 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1215
17-03-17 22:45:02.098 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1215
17-03-17 22:45:02.098 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:45:02.098 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1215
17-03-17 22:45:02.098 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1215
17-03-17 22:45:02.098 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:45:02.098 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:45:02.098 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) start.
17-03-17 22:45:02.098 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:45:02.098 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 22:45:02.288 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP 1407
17-03-17 22:45:02.288 -07 000000438 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:45:02.288 -07 000000610 INF: FPGA: 'CAMDBLSNAP 459 459 221 221 37373 150' command took 2 ms to send, 1404 ms to get response, and 1414 ms overall
17-03-17 22:45:02.288 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 22:45:02.288 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.05712890625, Z-Position -0.17028444983761. ------
17-03-17 22:45:02.298 -07 000000561 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.17669 mm
17-03-17 22:45:02.298 -07 000000561 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:45:02.298 -07 000000438 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:45:02.488 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) end. Duration was 387 ms.
17-03-17 22:45:02.488 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 22:45:02.488 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:45:02.488 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:45:02.498 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 397 ms.
17-03-17 22:45:02.498 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 22:45:02.498 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:45:02.498 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 22:45:02.498 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:45:02.508 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-17 22:45:02.518 -07 000000458 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:45:02.518 -07 000000438 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 210 ms to get response, and 218 ms overall
17-03-17 22:45:02.518 -07 000000438 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:45:02.518 -07 000000478 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-17 22:45:02.518 -07 000000478 INF: Y Motor: Moving to 64.8926 mm, started at 64.0571 mm, delta = 0.8355 mm
17-03-17 22:45:02.518 -07 000000458 INF: Z Motor: Entering MoveAbsStepped (DAC = 38598, sync = True, waitForSettling = False)
17-03-17 22:45:02.518 -07 000000458 INF: Z Motor: Moving to -0.176690 mm, started at -0.170284 mm, distance = -6.41 um
17-03-17 22:45:02.528 -07 000000458 INF: FPGA: Xmit ZDACW 38598\n [Z Motor]
17-03-17 22:45:02.538 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:45:03.448 -07 000000627 INF: FPGA: Recv ZDACW
17-03-17 22:45:03.448 -07 000000627 INF: FPGA: Recv YRDPOS 131189
17-03-17 22:45:03.448 -07 000000458 INF: FPGA: 'ZDACW 38598' command took 0 ms to send, 910 ms to get response, and 928 ms overall
17-03-17 22:45:03.448 -07 000000627 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:45:03.448 -07 000000438 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 924 ms to get response, and 932 ms overall
17-03-17 22:45:03.448 -07 000000458 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:45:03.448 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 900 ms to get response, and 929 ms overall
17-03-17 22:45:03.448 -07 000000478 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:45:03.448 -07 000000478 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:45:03.448 -07 000000478 INF: Y Motor: Moving 1337 steps-11
17-03-17 22:45:03.448 -07 000000438 INF: FPGA: Recv ZDACR 38598
17-03-17 22:45:03.458 -07 000000458 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 22:45:03.458 -07 000000458 INF: Z Motor: MoveAbsStepped took 937 ms (did NOT wait for settling yet))
17-03-17 22:45:03.458 -07 000000478 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:45:03.828 -07 000000438 INF: FPGA: Recv YMVTILE
17-03-17 22:45:03.828 -07 000000478 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 383 ms overall
17-03-17 22:45:03.868 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:45:03.878 -07 000000627 INF: FPGA: Recv YRDPOS 132872
17-03-17 22:45:03.878 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 22:45:03.878 -07 000000478 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:45:03.878 -07 000000478 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 22:45:03.878 -07 000000478 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 384 ms, distance = 0.835 mm, average velocity = 2.176 mm/sec
17-03-17 22:45:04.388 -07 000000627 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 67, FrontChillerTemperature: 4.018051,
17-03-17 22:45:04.828 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:45:04.828 -07 000000486 INF: FPGA: Recv YRDPOS 132872
17-03-17 22:45:04.838 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:45:04.838 -07 000000478 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:45:04.858 -07 000000478 INF: Y Motor: After move to 64.892609, error = -0.013702, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:45:04.858 -07 000000478 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:45:04.858 -07 000000478 INF: Y Motor: Moved to 64.8789 after 2344 ms (table move)
17-03-17 22:45:04.858 -07 000000561 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176690 mm (DAC = 38598)
17-03-17 22:45:04.858 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:04.868 -07 000000551 INF: FPGA: Recv ZSGSRD 36791
17-03-17 22:45:04.868 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 3 ms to get response, and 3 ms overall
17-03-17 22:45:04.868 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:04.868 -07 000000482 INF: FPGA: Recv ZSGSRD 36805
17-03-17 22:45:04.878 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:45:04.878 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:04.878 -07 000000438 INF: FPGA: Recv ZSGSRD 36797
17-03-17 22:45:04.888 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:04.888 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:04.888 -07 000000486 INF: FPGA: Recv ZSGSRD 36800
17-03-17 22:45:04.898 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:04.898 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:04.898 -07 000000551 INF: FPGA: Recv ZSGSRD 36795
17-03-17 22:45:04.908 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:04.908 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:04.908 -07 000000478 INF: FPGA: Recv ZSGSRD 36797
17-03-17 22:45:04.918 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:04.918 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:04.918 -07 000000458 INF: FPGA: Recv ZSGSRD 36790
17-03-17 22:45:04.928 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:04.928 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:04.928 -07 000000478 INF: FPGA: Recv ZSGSRD 36790
17-03-17 22:45:04.938 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:04.938 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:04.938 -07 000000438 INF: FPGA: Recv ZSGSRD 36789
17-03-17 22:45:04.948 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:04.948 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:04.948 -07 000000627 INF: FPGA: Recv ZSGSRD 36795
17-03-17 22:45:04.958 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:04.958 -07 000000561 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:45:04.958 -07 000000551 INF: FPGA: Recv ZPIEZORD 33091
17-03-17 22:45:04.968 -07 000000561 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:04.968 -07 000000561 INF: Z Motor: Piezo is near 50.7 V (nominally 0 to 100 V), expect near 58.9 V, since DAC is at 5.890 V. Piezo Error = -8.2 V.
17-03-17 22:45:04.968 -07 000000561 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.7 um, Read 10 ADC samples: Avg = 36795 (-175.8 uncal um), Error = 0.9 uncal um, Median = 36795 (-175.8 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 36789 (-175.8 uncal um), Max = 36805 (-175.9 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 22:45:04.968 -07 000000561 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36795, posNoise = 10, negNoise = 6
17-03-17 22:45:04.968 -07 000000561 INF: Z Motor: After move to -0.176690, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:45:04.968 -07 000000561 INF: Z Motor: Settle wait time = 2347 ms, measure time = 101 ms (allowed 150 ms), total time = 2448 ms
17-03-17 22:45:04.968 -07 000000561 INF: Z Motor: Waiting extra 49 ms after reading position to reach expected total of 150 ms
17-03-17 22:45:05.018 -07 000000561 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2717 ms
17-03-17 22:45:05.018 -07 000000561 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:45:05.018 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:45:05.018 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:45:05.018 -07 000000458 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:45:05.018 -07 000000551 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:45:05.018 -07 000000486 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:45:05.018 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:45:05.018 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:45:05.018 -07 000000486 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:45:05.028 -07 000000486 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 22:45:05.028 -07 000000486 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:45:05.038 -07 000000486 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 22:45:05.038 -07 000000486 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 22:45:05.038 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:45:05.088 -07 000000551 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:45:05.288 -07 000000458 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:45:05.288 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:45:05.288 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:45:05.288 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 619151688, 0x0, 559484976) start.
17-03-17 22:45:05.328 -07 000000478 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:45:05.328 -07 000000561 INF: FPGA: Recv CAMSNAP
17-03-17 22:45:05.328 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 285 ms overall
17-03-17 22:45:05.418 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 619151688, 0x0, 559484976) end. Duration was 125 ms.
17-03-17 22:45:05.418 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:45:05.418 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 22:45:05.418 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-17 22:45:05.428 -07 000000458 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:45:05.428 -07 000000478 INF: Autofocus start
17-03-17 22:45:05.428 -07 000000478 INF: MeasureProfile start
17-03-17 22:45:05.428 -07 000000551 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:45:05.438 -07 000000458 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:45:05.438 -07 000000458 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:45:05.438 -07 000000478 INF: MeasureProfile done
17-03-17 22:45:05.438 -07 000000478 INF: X=32  Z correction [um]=0.09220707
17-03-17 22:45:05.438 -07 000000478 INF: Autofocus finished
17-03-17 22:45:05.638 -07 000000478 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:45:05.638 -07 000000458 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:45:05.638 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87890625, Z-position -0.176702237767229. ----------
17-03-17 22:45:05.638 -07 000000610 INF: Cycle	67	Tile	7	Exposure Settings		A	459	G	221	T	221	C	459
17-03-17 22:45:05.638 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37130, sync = True, waitForSettling = True)
17-03-17 22:45:05.648 -07 000000610 INF: Z Motor: Moving to -0.169970 mm, started at -0.176702 mm, distance = 6.73 um
17-03-17 22:45:05.648 -07 000000610 INF: FPGA: Xmit ZDACW 37130\n [Z Motor]
17-03-17 22:45:05.648 -07 000000551 INF: FPGA: Recv ZDACW
17-03-17 22:45:05.658 -07 000000610 INF: FPGA: 'ZDACW 37130' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:05.658 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:45:05.658 -07 000000561 INF: FPGA: Recv ZDACR 37130
17-03-17 22:45:05.668 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:05.668 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:45:05.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:05.818 -07 000000458 INF: FPGA: Recv ZSGSRD 35750
17-03-17 22:45:05.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:45:05.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:05.828 -07 000000438 INF: FPGA: Recv ZSGSRD 35750
17-03-17 22:45:05.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:05.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:05.838 -07 000000551 INF: FPGA: Recv ZSGSRD 35753
17-03-17 22:45:05.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:05.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:05.848 -07 000000627 INF: FPGA: Recv ZSGSRD 35752
17-03-17 22:45:05.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:05.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:05.858 -07 000000478 INF: FPGA: Recv ZSGSRD 35754
17-03-17 22:45:05.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:45:05.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:05.868 -07 000000482 INF: FPGA: Recv ZSGSRD 35755
17-03-17 22:45:05.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:05.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:05.878 -07 000000478 INF: FPGA: Recv ZSGSRD 35747
17-03-17 22:45:05.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:05.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:05.888 -07 000000438 INF: FPGA: Recv ZSGSRD 35752
17-03-17 22:45:05.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:05.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:05.898 -07 000000458 INF: FPGA: Recv ZSGSRD 35743
17-03-17 22:45:05.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:05.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:05.908 -07 000000551 INF: FPGA: Recv ZSGSRD 35748
17-03-17 22:45:05.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:05.918 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:45:05.918 -07 000000478 INF: FPGA: Recv ZPIEZORD 31691
17-03-17 22:45:05.928 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:05.928 -07 000000610 INF: Z Motor: Piezo is near 47.7 V (nominally 0 to 100 V), expect near 56.7 V, since DAC is at 5.666 V. Piezo Error = -9.0 V.
17-03-17 22:45:05.928 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.0 um, Read 10 ADC samples: Avg = 35750 (-169.1 uncal um), Error = 0.9 uncal um, Median = 35751 (-169.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35743 (-169.1 uncal um), Max = 35755 (-169.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 22:45:05.928 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35750, posNoise = 5, negNoise = 7
17-03-17 22:45:05.928 -07 000000610 INF: Z Motor: After move to -0.169970, error = -0.000019, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:45:05.928 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 22:45:05.928 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:45:05.928 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:45:05.928 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:45:05.928 -07 000000478 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:45:05.928 -07 000000482 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:45:05.928 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:45:05.928 -07 000000627 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:45:05.928 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:45:05.928 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:45:05.928 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:45:05.928 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:45:05.928 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:45:05.928 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:45:05.928 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:45:05.938 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 22:45:05.938 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:45:05.948 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 22:45:05.948 -07 000000478 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 22:45:05.948 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-17 22:45:05.948 -07 000000627 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 22:45:05.948 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 459 459 221 221 37307 150\n [Camera]
17-03-17 22:45:06.148 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:45:06.608 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 651
17-03-17 22:45:06.608 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 651
17-03-17 22:45:06.608 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:45:06.608 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:45:06.608 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 2350877912, 0x0, 391868352) start.
17-03-17 22:45:06.618 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 651
17-03-17 22:45:06.618 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 651
17-03-17 22:45:06.618 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:45:06.618 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:45:06.618 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 22:45:06.808 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37307 844
17-03-17 22:45:06.958 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning grn on 994
17-03-17 22:45:06.998 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 385 ms.
17-03-17 22:45:06.998 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-17 22:45:06.998 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:45:06.998 -07 000000486 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:45:06.998 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 66. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1047, R2=1076, Total=2123. Warn if over 250 bubbles per interval.
17-03-17 22:45:07.008 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:45:07.008 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 2350877912, 0x0, 391868352) end. Duration was 395 ms.
17-03-17 22:45:07.008 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 22:45:07.008 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:45:07.008 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 22:45:07.008 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:45:07.008 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 22:45:07.178 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1215
17-03-17 22:45:07.178 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1215
17-03-17 22:45:07.178 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:45:07.178 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:45:07.178 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-17 22:45:07.178 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1215
17-03-17 22:45:07.178 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1215
17-03-17 22:45:07.178 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:45:07.178 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:45:07.178 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-17 22:45:07.368 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP 1409
17-03-17 22:45:07.368 -07 000000438 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:45:07.368 -07 000000610 INF: FPGA: 'CAMDBLSNAP 459 459 221 221 37307 150' command took 2 ms to send, 1405 ms to get response, and 1416 ms overall
17-03-17 22:45:07.488 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 22:45:07.488 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.87890625, Z-Position -0.169988936079089. ------
17-03-17 22:45:07.488 -07 000000438 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:45:07.488 -07 000000482 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.17652 mm
17-03-17 22:45:07.488 -07 000000482 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:45:07.488 -07 000000458 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-17 22:45:07.488 -07 000000458 INF: Y Motor: Moving to 65.7226 mm, started at 64.8789 mm, delta = 0.8437 mm
17-03-17 22:45:07.488 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:45:07.488 -07 000000551 INF: Z Motor: Entering MoveAbsStepped (DAC = 38560, sync = True, waitForSettling = False)
17-03-17 22:45:07.488 -07 000000551 INF: Z Motor: Moving to -0.176516 mm, started at -0.169989 mm, distance = -6.53 um
17-03-17 22:45:07.498 -07 000000438 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 22:45:07.498 -07 000000551 INF: FPGA: Xmit ZDACW 38560\n [Z Motor]
17-03-17 22:45:07.498 -07 000000576 INF: FPGA: Recv ZDACW
17-03-17 22:45:07.508 -07 000000458 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:45:07.508 -07 000000551 INF: FPGA: 'ZDACW 38560' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 22:45:07.518 -07 000000438 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:45:07.528 -07 000000551 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:45:07.578 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 396 ms.
17-03-17 22:45:07.578 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 22:45:07.578 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:45:07.578 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 396 ms.
17-03-17 22:45:07.578 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 22:45:07.578 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:45:07.578 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:45:07.578 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 22:45:07.578 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 22:45:07.588 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-17 22:45:07.598 -07 000000627 INF: FPGA: Recv YRDPOS 132873
17-03-17 22:45:07.598 -07 000000627 INF: FPGA: Recv ZDACR 38560
17-03-17 22:45:07.598 -07 000000551 INF: FPGA: 'ZDACR' command took 0 ms to send, 65 ms to get response, and 95 ms overall
17-03-17 22:45:07.598 -07 000000551 INF: Z Motor: MoveAbsStepped took 107 ms (did NOT wait for settling yet))
17-03-17 22:45:07.598 -07 000000458 INF: FPGA: 'YRDPOS' command took 0 ms to send, 85 ms to get response, and 108 ms overall
17-03-17 22:45:07.598 -07 000000458 INF: Y Motor: Encoder = 132873 = motor step 103807.0 = 64.8794 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:45:07.608 -07 000000458 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:45:07.608 -07 000000458 INF: Y Motor: Moving 1349 steps-28
17-03-17 22:45:07.608 -07 000000458 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:45:07.718 -07 000000551 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:45:07.718 -07 000000438 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 22:45:07.978 -07 000000438 INF: FPGA: Recv YMVTILE
17-03-17 22:45:07.978 -07 000000458 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 378 ms overall
17-03-17 22:45:08.028 -07 000000458 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:45:08.028 -07 000000551 INF: FPGA: Recv YRDPOS 134582
17-03-17 22:45:08.038 -07 000000458 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:08.038 -07 000000458 INF: Y Motor: Encoder = 134582 = motor step 105142.2 = 65.7139 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:45:08.038 -07 000000458 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-17 22:45:08.038 -07 000000458 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.844 mm, average velocity = 2.232 mm/sec
17-03-17 22:45:08.988 -07 000000458 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:45:08.988 -07 000000438 INF: FPGA: Recv YRDPOS 134583
17-03-17 22:45:08.998 -07 000000458 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:45:08.998 -07 000000458 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:45:09.018 -07 000000458 INF: Y Motor: After move to 65.722610, error = -0.008255, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:45:09.018 -07 000000458 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 22:45:09.018 -07 000000458 INF: Y Motor: Moved to 65.7144 after 1531 ms (table move)
17-03-17 22:45:09.028 -07 000000482 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176516 mm (DAC = 38560)
17-03-17 22:45:09.028 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:09.028 -07 000000627 INF: FPGA: Recv ZSGSRD 36767
17-03-17 22:45:09.038 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:45:09.038 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:09.038 -07 000000551 INF: FPGA: Recv ZSGSRD 36768
17-03-17 22:45:09.048 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:09.048 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:09.048 -07 000000551 INF: FPGA: Recv ZSGSRD 36767
17-03-17 22:45:09.058 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:09.058 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:09.058 -07 000000627 INF: FPGA: Recv ZSGSRD 36766
17-03-17 22:45:09.068 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:45:09.068 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:09.068 -07 000000627 INF: FPGA: Recv ZSGSRD 36773
17-03-17 22:45:09.078 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:09.078 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:09.078 -07 000000551 INF: FPGA: Recv ZSGSRD 36762
17-03-17 22:45:09.088 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:09.088 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:09.088 -07 000000627 INF: FPGA: Recv ZSGSRD 36765
17-03-17 22:45:09.098 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:09.098 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:09.098 -07 000000627 INF: FPGA: Recv ZSGSRD 36768
17-03-17 22:45:09.108 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:09.108 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:09.108 -07 000000627 INF: FPGA: Recv ZSGSRD 36768
17-03-17 22:45:09.118 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:09.128 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:09.128 -07 000000438 INF: FPGA: Recv ZSGSRD 36771
17-03-17 22:45:09.138 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:45:09.138 -07 000000482 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:45:09.138 -07 000000458 INF: FPGA: Recv ZPIEZORD 33087
17-03-17 22:45:09.148 -07 000000482 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:09.148 -07 000000482 INF: Z Motor: Piezo is near 50.7 V (nominally 0 to 100 V), expect near 58.8 V, since DAC is at 5.884 V. Piezo Error = -8.2 V.
17-03-17 22:45:09.148 -07 000000482 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.5 um, Read 10 ADC samples: Avg = 36768 (-175.6 uncal um), Error = 0.9 uncal um, Median = 36768 (-175.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36762 (-175.6 uncal um), Max = 36773 (-175.7 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 22:45:09.148 -07 000000482 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36768, posNoise = 5, negNoise = 6
17-03-17 22:45:09.148 -07 000000482 INF: Z Motor: After move to -0.176516, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:45:09.148 -07 000000482 INF: Z Motor: Settle wait time = 1533 ms, measure time = 119 ms (allowed 150 ms), total time = 1652 ms
17-03-17 22:45:09.148 -07 000000482 INF: Z Motor: Waiting extra 31 ms after reading position to reach expected total of 150 ms
17-03-17 22:45:09.188 -07 000000482 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1695 ms
17-03-17 22:45:09.188 -07 000000482 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:45:09.188 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:45:09.188 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:45:09.188 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:45:09.188 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:45:09.188 -07 000000482 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:45:09.198 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:45:09.198 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:45:09.198 -07 000000482 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:45:09.198 -07 000000482 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:45:09.198 -07 000000482 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:45:09.208 -07 000000482 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 22:45:09.208 -07 000000482 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-17 22:45:09.208 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:45:09.248 -07 000000627 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:45:09.448 -07 000000627 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:45:09.448 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:45:09.458 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:45:09.458 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 22:45:09.488 -07 000000551 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:45:09.488 -07 000000627 INF: FPGA: Recv CAMSNAP
17-03-17 22:45:09.488 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 285 ms overall
17-03-17 22:45:09.578 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 119 ms.
17-03-17 22:45:09.578 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:45:09.578 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:45:09.578 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 122 ms.
17-03-17 22:45:09.588 -07 000000627 INF: Autofocus start
17-03-17 22:45:09.588 -07 000000627 INF: MeasureProfile start
17-03-17 22:45:09.588 -07 000000438 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:45:09.588 -07 000000458 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:45:09.598 -07 000000438 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 22:45:09.598 -07 000000438 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:45:09.598 -07 000000627 INF: MeasureProfile done
17-03-17 22:45:09.598 -07 000000627 INF: X=16  Z correction [um]=0.01042744
17-03-17 22:45:09.598 -07 000000627 INF: Autofocus finished
17-03-17 22:45:09.768 -07 000000547 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 67, FrontChillerTemperature: 4.039839,
17-03-17 22:45:09.798 -07 000000482 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:45:09.798 -07 000000438 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 204 ms overall
17-03-17 22:45:09.798 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.71435546875, Z-position -0.176528784039402. ----------
17-03-17 22:45:09.808 -07 000000610 INF: Cycle	67	Tile	8	Exposure Settings		A	459	G	221	T	221	C	459
17-03-17 22:45:09.808 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37075, sync = True, waitForSettling = True)
17-03-17 22:45:09.808 -07 000000610 INF: Z Motor: Moving to -0.169718 mm, started at -0.176529 mm, distance = 6.81 um
17-03-17 22:45:09.808 -07 000000610 INF: FPGA: Xmit ZDACW 37075\n [Z Motor]
17-03-17 22:45:09.808 -07 000000459 INF: FPGA: Recv ZDACW
17-03-17 22:45:09.818 -07 000000610 INF: FPGA: 'ZDACW 37075' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:45:09.818 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:45:09.818 -07 000000429 INF: FPGA: Recv ZDACR 37075
17-03-17 22:45:09.828 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:09.828 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:45:09.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:09.978 -07 000000458 INF: FPGA: Recv ZSGSRD 35705
17-03-17 22:45:09.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:45:09.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:09.988 -07 000000551 INF: FPGA: Recv ZSGSRD 35710
17-03-17 22:45:09.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:09.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:09.998 -07 000000627 INF: FPGA: Recv ZSGSRD 35713
17-03-17 22:45:10.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:10.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:10.008 -07 000000429 INF: FPGA: Recv ZSGSRD 35707
17-03-17 22:45:10.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:10.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:10.018 -07 000000459 INF: FPGA: Recv ZSGSRD 35713
17-03-17 22:45:10.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:10.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:10.028 -07 000000547 INF: FPGA: Recv ZSGSRD 35707
17-03-17 22:45:10.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:10.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:10.038 -07 000000627 INF: FPGA: Recv ZSGSRD 35712
17-03-17 22:45:10.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:10.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:10.048 -07 000000551 INF: FPGA: Recv ZSGSRD 35714
17-03-17 22:45:10.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:10.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:10.058 -07 000000459 INF: FPGA: Recv ZSGSRD 35709
17-03-17 22:45:10.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:10.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:10.068 -07 000000429 INF: FPGA: Recv ZSGSRD 35708
17-03-17 22:45:10.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:10.078 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:45:10.078 -07 000000627 INF: FPGA: Recv ZPIEZORD 31627
17-03-17 22:45:10.088 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:10.088 -07 000000610 INF: Z Motor: Piezo is near 47.6 V (nominally 0 to 100 V), expect near 56.6 V, since DAC is at 5.657 V. Piezo Error = -9.0 V.
17-03-17 22:45:10.088 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.7 um, Read 10 ADC samples: Avg = 35710 (-168.9 uncal um), Error = 0.9 uncal um, Median = 35710 (-168.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35705 (-168.8 uncal um), Max = 35714 (-168.9 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 22:45:10.088 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35710, posNoise = 4, negNoise = 5
17-03-17 22:45:10.088 -07 000000610 INF: Z Motor: After move to -0.169718, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:45:10.088 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 22:45:10.088 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:45:10.088 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:45:10.088 -07 000000551 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:45:10.088 -07 000000547 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:45:10.088 -07 000000482 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:45:10.088 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:45:10.088 -07 000000627 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:45:10.088 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:45:10.088 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:45:10.088 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:45:10.088 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:45:10.088 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:45:10.098 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:45:10.098 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:45:10.098 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:45:10.098 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:45:10.108 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 22:45:10.108 -07 000000482 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 22:45:10.108 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 22:45:10.108 -07 000000627 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 22:45:10.118 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 459 459 221 221 37252 150\n [Camera]
17-03-17 22:45:10.308 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:45:10.768 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 651
17-03-17 22:45:10.768 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 651
17-03-17 22:45:10.768 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:45:10.778 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 651
17-03-17 22:45:10.778 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 651
17-03-17 22:45:10.778 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:45:10.778 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:45:10.778 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-17 22:45:10.778 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:45:10.778 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-17 22:45:10.968 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37252 844
17-03-17 22:45:11.118 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP turning grn on 994
17-03-17 22:45:11.168 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 395 ms.
17-03-17 22:45:11.168 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 22:45:11.168 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:45:11.178 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 394 ms.
17-03-17 22:45:11.178 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 22:45:11.178 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:45:11.178 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 22:45:11.178 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-17 22:45:11.178 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:45:11.188 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-17 22:45:11.338 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1215
17-03-17 22:45:11.338 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1215
17-03-17 22:45:11.338 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:45:11.338 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1215
17-03-17 22:45:11.338 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1215
17-03-17 22:45:11.338 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:45:11.458 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:45:11.458 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) start.
17-03-17 22:45:11.458 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:45:11.458 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start.
17-03-17 22:45:11.528 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP 1408
17-03-17 22:45:11.528 -07 000000547 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:45:11.528 -07 000000610 INF: FPGA: 'CAMDBLSNAP 459 459 221 221 37252 150' command took 2 ms to send, 1405 ms to get response, and 1415 ms overall
17-03-17 22:45:11.528 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 22:45:11.528 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.71435546875, Z-Position -0.169731967593419. ------
17-03-17 22:45:11.528 -07 000000429 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:45:11.528 -07 000000482 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.17613 mm
17-03-17 22:45:11.528 -07 000000482 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:45:11.538 -07 000000475 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:45:11.538 -07 000000429 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 22:45:11.538 -07 000000547 INF: Z Motor: Entering MoveAbsStepped (DAC = 38476, sync = True, waitForSettling = False)
17-03-17 22:45:11.538 -07 000000547 INF: Z Motor: Moving to -0.176132 mm, started at -0.169732 mm, distance = -6.40 um
17-03-17 22:45:11.538 -07 000000547 INF: FPGA: Xmit ZDACW 38476\n [Z Motor]
17-03-17 22:45:11.538 -07 000000459 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-17 22:45:11.538 -07 000000459 INF: Y Motor: Moving to 66.5526 mm, started at 65.7144 mm, delta = 0.8382 mm
17-03-17 22:45:11.538 -07 000000438 INF: FPGA: Recv ZDACW
17-03-17 22:45:11.548 -07 000000547 INF: FPGA: 'ZDACW 38476' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:45:11.548 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:45:11.548 -07 000000438 INF: FPGA: Recv YRDPOS 134583
17-03-17 22:45:11.558 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 22:45:11.558 -07 000000459 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:45:11.558 -07 000000459 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:45:11.558 -07 000000459 INF: Y Motor: Moving 1341 steps-18
17-03-17 22:45:11.558 -07 000000429 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:45:11.568 -07 000000547 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:45:11.568 -07 000000458 INF: FPGA: Recv ZDACR 38476
17-03-17 22:45:11.578 -07 000000459 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:45:11.578 -07 000000547 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:45:11.578 -07 000000547 INF: Z Motor: MoveAbsStepped took 39 ms (did NOT wait for settling yet))
17-03-17 22:45:11.758 -07 000000618 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:45:11.758 -07 000000429 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 196 ms to get response, and 223 ms overall
17-03-17 22:45:11.858 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) end. Duration was 396 ms.
17-03-17 22:45:11.858 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 22:45:11.858 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:45:11.858 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 397 ms.
17-03-17 22:45:11.858 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 22:45:11.858 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:45:11.858 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:45:11.858 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:45:11.858 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 525 ms.
17-03-17 22:45:11.868 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 526 ms.
17-03-17 22:45:11.948 -07 000000547 INF: FPGA: Recv YMVTILE
17-03-17 22:45:11.948 -07 000000459 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 22:45:11.988 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:45:11.998 -07 000000475 INF: FPGA: Recv YRDPOS 136272
17-03-17 22:45:11.998 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 22:45:11.998 -07 000000459 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:45:11.998 -07 000000459 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 22:45:11.998 -07 000000459 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.838 mm, average velocity = 2.111 mm/sec
17-03-17 22:45:11.998 -07 000000547 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:45:11.998 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 66. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1047, R2=1076, Total=2123. Warn if over 250 bubbles per interval.
17-03-17 22:45:12.948 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:45:12.948 -07 000000551 INF: FPGA: Recv YRDPOS 136273
17-03-17 22:45:12.958 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:45:12.958 -07 000000459 INF: Y Motor: Encoder = 136273 = motor step 106463.3 = 66.5396 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:45:12.978 -07 000000459 INF: Y Motor: After move to 66.552605, error = -0.013054, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:45:12.978 -07 000000459 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 22:45:12.978 -07 000000459 INF: Y Motor: Moved to 66.5396 after 1442 ms (table move)
17-03-17 22:45:12.978 -07 000000482 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176132 mm (DAC = 38476)
17-03-17 22:45:12.978 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:12.988 -07 000000551 INF: FPGA: Recv ZSGSRD 36715
17-03-17 22:45:12.998 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:45:12.998 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:12.998 -07 000000547 INF: FPGA: Recv ZSGSRD 36704
17-03-17 22:45:13.008 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:13.008 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:13.008 -07 000000547 INF: FPGA: Recv ZSGSRD 36708
17-03-17 22:45:13.018 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:13.018 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:13.018 -07 000000458 INF: FPGA: Recv ZSGSRD 36713
17-03-17 22:45:13.028 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:13.028 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:13.028 -07 000000458 INF: FPGA: Recv ZSGSRD 36709
17-03-17 22:45:13.038 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:13.038 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:13.038 -07 000000459 INF: FPGA: Recv ZSGSRD 36710
17-03-17 22:45:13.048 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:13.048 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:13.048 -07 000000459 INF: FPGA: Recv ZSGSRD 36710
17-03-17 22:45:13.058 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:45:13.058 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:13.058 -07 000000547 INF: FPGA: Recv ZSGSRD 36701
17-03-17 22:45:13.068 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:13.068 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:13.068 -07 000000459 INF: FPGA: Recv ZSGSRD 36709
17-03-17 22:45:13.078 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:13.078 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:13.078 -07 000000547 INF: FPGA: Recv ZSGSRD 36704
17-03-17 22:45:13.088 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:13.088 -07 000000482 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:45:13.088 -07 000000458 INF: FPGA: Recv ZPIEZORD 32981
17-03-17 22:45:13.098 -07 000000482 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:13.098 -07 000000482 INF: Z Motor: Piezo is near 50.5 V (nominally 0 to 100 V), expect near 58.7 V, since DAC is at 5.871 V. Piezo Error = -8.3 V.
17-03-17 22:45:13.098 -07 000000482 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.1 um, Read 10 ADC samples: Avg = 36708 (-175.3 uncal um), Error = 0.9 uncal um, Median = 36709 (-175.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36701 (-175.2 uncal um), Max = 36715 (-175.3 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 22:45:13.098 -07 000000482 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36708, posNoise = 7, negNoise = 7
17-03-17 22:45:13.098 -07 000000482 INF: Z Motor: After move to -0.176132, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:45:13.098 -07 000000482 INF: Z Motor: Settle wait time = 1446 ms, measure time = 111 ms (allowed 150 ms), total time = 1557 ms
17-03-17 22:45:13.098 -07 000000482 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-17 22:45:13.138 -07 000000482 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1600 ms
17-03-17 22:45:13.138 -07 000000482 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:45:13.138 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:45:13.138 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:45:13.138 -07 000000551 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:45:13.138 -07 000000459 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:45:13.138 -07 000000547 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:45:13.138 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:45:13.138 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 22:45:13.138 -07 000000547 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:45:13.138 -07 000000547 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:45:13.148 -07 000000547 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:45:13.158 -07 000000547 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 22:45:13.158 -07 000000547 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 22:45:13.158 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:45:13.208 -07 000000482 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:45:13.408 -07 000000482 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:45:13.408 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:45:13.408 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:45:13.408 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 606469960, 0x0, 559484976) start.
17-03-17 22:45:13.448 -07 000000551 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:45:13.448 -07 000000458 INF: FPGA: Recv CAMSNAP
17-03-17 22:45:13.448 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 284 ms overall
17-03-17 22:45:13.518 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 606469960, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 22:45:13.518 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:45:13.518 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:45:13.518 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 22:45:13.548 -07 000000551 INF: Autofocus start
17-03-17 22:45:13.548 -07 000000551 INF: MeasureProfile start
17-03-17 22:45:13.548 -07 000000459 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:45:13.548 -07 000000458 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:45:13.558 -07 000000459 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:45:13.558 -07 000000459 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:45:13.558 -07 000000551 INF: MeasureProfile done
17-03-17 22:45:13.558 -07 000000551 INF: X=32  Z correction [um]=0.09220707
17-03-17 22:45:13.558 -07 000000551 INF: Autofocus finished
17-03-17 22:45:13.758 -07 000000551 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:45:13.758 -07 000000459 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 196 ms to get response, and 206 ms overall
17-03-17 22:45:13.768 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.53955078125, Z-position -0.176143331310896. ----------
17-03-17 22:45:13.768 -07 000000610 INF: Cycle	67	Tile	9	Exposure Settings		A	459	G	221	T	221	C	459
17-03-17 22:45:13.768 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37009, sync = True, waitForSettling = True)
17-03-17 22:45:13.768 -07 000000610 INF: Z Motor: Moving to -0.169416 mm, started at -0.176143 mm, distance = 6.73 um
17-03-17 22:45:13.768 -07 000000610 INF: FPGA: Xmit ZDACW 37009\n [Z Motor]
17-03-17 22:45:13.768 -07 000000459 INF: FPGA: Recv ZDACW
17-03-17 22:45:13.778 -07 000000610 INF: FPGA: 'ZDACW 37009' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:45:13.778 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:45:13.778 -07 000000459 INF: FPGA: Recv ZDACR 37009
17-03-17 22:45:13.788 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:13.788 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:45:13.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:13.938 -07 000000547 INF: FPGA: Recv ZSGSRD 35660
17-03-17 22:45:13.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:45:13.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:13.948 -07 000000482 INF: FPGA: Recv ZSGSRD 35663
17-03-17 22:45:13.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:13.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:13.958 -07 000000551 INF: FPGA: Recv ZSGSRD 35666
17-03-17 22:45:13.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:13.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:13.968 -07 000000482 INF: FPGA: Recv ZSGSRD 35658
17-03-17 22:45:13.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:13.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:13.978 -07 000000458 INF: FPGA: Recv ZSGSRD 35659
17-03-17 22:45:13.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:13.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:13.988 -07 000000459 INF: FPGA: Recv ZSGSRD 35662
17-03-17 22:45:13.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:13.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:13.998 -07 000000547 INF: FPGA: Recv ZSGSRD 35659
17-03-17 22:45:14.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:14.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:14.008 -07 000000458 INF: FPGA: Recv ZSGSRD 35661
17-03-17 22:45:14.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:14.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:14.018 -07 000000459 INF: FPGA: Recv ZSGSRD 35658
17-03-17 22:45:14.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:14.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:14.028 -07 000000482 INF: FPGA: Recv ZSGSRD 35663
17-03-17 22:45:14.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:14.038 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:45:14.038 -07 000000459 INF: FPGA: Recv ZPIEZORD 31606
17-03-17 22:45:14.048 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:14.048 -07 000000610 INF: Z Motor: Piezo is near 47.5 V (nominally 0 to 100 V), expect near 56.5 V, since DAC is at 5.647 V. Piezo Error = -9.0 V.
17-03-17 22:45:14.048 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.4 um, Read 10 ADC samples: Avg = 35661 (-168.5 uncal um), Error = 0.9 uncal um, Median = 35660 (-168.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35658 (-168.5 uncal um), Max = 35666 (-168.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 22:45:14.048 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35661, posNoise = 5, negNoise = 3
17-03-17 22:45:14.048 -07 000000610 INF: Z Motor: After move to -0.169416, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:45:14.048 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 22:45:14.048 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:45:14.048 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:45:14.048 -07 000000482 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:45:14.048 -07 000000547 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:45:14.048 -07 000000459 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:45:14.048 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:45:14.048 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:45:14.048 -07 000000551 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:45:14.048 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 22:45:14.048 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:45:14.048 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:45:14.048 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:45:14.058 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 22:45:14.058 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 22:45:14.058 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:45:14.058 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:45:14.068 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-17 22:45:14.068 -07 000000459 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 18 ms.
17-03-17 22:45:14.068 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 12 ms.
17-03-17 22:45:14.068 -07 000000547 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 22:45:14.068 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 459 459 221 221 37186 150\n [Camera]
17-03-17 22:45:14.268 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP turning red on 193
17-03-17 22:45:14.728 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 651
17-03-17 22:45:14.728 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 651
17-03-17 22:45:14.728 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:45:14.728 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 651
17-03-17 22:45:14.728 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 651
17-03-17 22:45:14.738 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:45:14.738 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:45:14.738 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-17 22:45:14.738 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:45:14.738 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 22:45:14.918 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37186 844
17-03-17 22:45:15.068 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP turning grn on 994
17-03-17 22:45:15.108 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 372 ms.
17-03-17 22:45:15.108 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-17 22:45:15.108 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:45:15.108 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 370 ms.
17-03-17 22:45:15.108 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-17 22:45:15.108 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:45:15.118 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:45:15.118 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 22:45:15.118 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:45:15.118 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 22:45:15.128 -07 000000458 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 67, FrontChillerTemperature: 4.030322,
17-03-17 22:45:15.298 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1215
17-03-17 22:45:15.298 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1215
17-03-17 22:45:15.298 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:45:15.298 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1215
17-03-17 22:45:15.298 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1215
17-03-17 22:45:15.298 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:45:15.298 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:45:15.298 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-17 22:45:15.308 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:45:15.308 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 22:45:15.488 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP 1408
17-03-17 22:45:15.488 -07 000000429 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:45:15.488 -07 000000610 INF: FPGA: 'CAMDBLSNAP 459 459 221 221 37186 150' command took 2 ms to send, 1412 ms to get response, and 1414 ms overall
17-03-17 22:45:15.488 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 22:45:15.488 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.53955078125, Z-Position -0.169417181198472. ------
17-03-17 22:45:15.488 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:45:15.488 -07 000000459 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.17617 mm
17-03-17 22:45:15.488 -07 000000459 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:45:15.488 -07 000000438 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-17 22:45:15.498 -07 000000438 INF: Y Motor: Moving to 67.3826 mm, started at 66.5396 mm, delta = 0.8431 mm
17-03-17 22:45:15.498 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:45:15.498 -07 000000551 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:45:15.498 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:45:15.498 -07 000000433 INF: FPGA: Recv YRDPOS 136273
17-03-17 22:45:15.498 -07 000000482 INF: Z Motor: Entering MoveAbsStepped (DAC = 38484, sync = True, waitForSettling = False)
17-03-17 22:45:15.498 -07 000000482 INF: Z Motor: Moving to -0.176168 mm, started at -0.169417 mm, distance = -6.75 um
17-03-17 22:45:15.508 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:15.508 -07 000000438 INF: Y Motor: Encoder = 136273 = motor step 106463.3 = 66.5396 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:45:15.508 -07 000000438 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:45:15.508 -07 000000438 INF: Y Motor: Moving 1349 steps-28
17-03-17 22:45:15.508 -07 000000482 INF: FPGA: Xmit ZDACW 38484\n [Z Motor]
17-03-17 22:45:15.508 -07 000000478 INF: FPGA: Recv ZDACW
17-03-17 22:45:15.518 -07 000000618 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:45:15.518 -07 000000482 INF: FPGA: 'ZDACW 38484' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 22:45:15.528 -07 000000438 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:45:15.538 -07 000000482 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:45:15.538 -07 000000627 INF: FPGA: Recv ZDACR 38484
17-03-17 22:45:15.548 -07 000000482 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:45:15.548 -07 000000482 INF: Z Motor: MoveAbsStepped took 46 ms (did NOT wait for settling yet))
17-03-17 22:45:15.698 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 400 ms.
17-03-17 22:45:15.698 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 22:45:15.698 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:45:15.698 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 399 ms.
17-03-17 22:45:15.698 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 22:45:15.698 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:45:15.708 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:45:15.708 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 413 ms.
17-03-17 22:45:15.708 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:45:15.718 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 417 ms.
17-03-17 22:45:15.718 -07 000000501 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:45:15.718 -07 000000618 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 219 ms overall
17-03-17 22:45:15.898 -07 000000429 INF: FPGA: Recv YMVTILE
17-03-17 22:45:15.898 -07 000000438 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 22:45:15.938 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:45:15.948 -07 000000512 INF: FPGA: Recv YRDPOS 137978
17-03-17 22:45:15.948 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 22:45:15.948 -07 000000438 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:45:15.948 -07 000000438 INF: Y Motor: Position error before settling (table move) = -22 encoder counts (-0.011 mm)
17-03-17 22:45:15.948 -07 000000438 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.843 mm, average velocity = 2.124 mm/sec
17-03-17 22:45:16.898 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:45:16.898 -07 000000482 INF: FPGA: Recv YRDPOS 137978
17-03-17 22:45:16.908 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:16.908 -07 000000438 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:45:16.928 -07 000000438 INF: Y Motor: After move to 67.382607, error = -0.010536, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:45:16.928 -07 000000438 INF: Y Motor: Position error after settling (table move) = -22 encoder counts (-0.011 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:45:16.928 -07 000000438 INF: Y Motor: Moved to 67.3721 after 1435 ms (table move)
17-03-17 22:45:16.928 -07 000000459 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176168 mm (DAC = 38484)
17-03-17 22:45:16.928 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:16.938 -07 000000458 INF: FPGA: Recv ZSGSRD 36713
17-03-17 22:45:16.938 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 22:45:16.938 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:16.938 -07 000000433 INF: FPGA: Recv ZSGSRD 36720
17-03-17 22:45:16.948 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:45:16.948 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:16.948 -07 000000478 INF: FPGA: Recv ZSGSRD 36715
17-03-17 22:45:16.958 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:16.958 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:16.958 -07 000000512 INF: FPGA: Recv ZSGSRD 36711
17-03-17 22:45:16.968 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:16.968 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:16.968 -07 000000486 INF: FPGA: Recv ZSGSRD 36714
17-03-17 22:45:16.978 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:16.978 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:16.978 -07 000000458 INF: FPGA: Recv ZSGSRD 36713
17-03-17 22:45:16.988 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:16.988 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:16.988 -07 000000438 INF: FPGA: Recv ZSGSRD 36720
17-03-17 22:45:16.998 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:16.998 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:16.998 -07 000000576 INF: FPGA: Recv ZSGSRD 36714
17-03-17 22:45:16.998 -07 000000475 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:45:16.998 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 66. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1047, R2=1076, Total=2123. Warn if over 250 bubbles per interval.
17-03-17 22:45:17.008 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:17.008 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:17.008 -07 000000576 INF: FPGA: Recv ZSGSRD 36702
17-03-17 22:45:17.018 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:17.018 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:17.018 -07 000000551 INF: FPGA: Recv ZSGSRD 36710
17-03-17 22:45:17.028 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:17.028 -07 000000459 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:45:17.028 -07 000000576 INF: FPGA: Recv ZPIEZORD 33003
17-03-17 22:45:17.038 -07 000000459 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:17.038 -07 000000459 INF: Z Motor: Piezo is near 50.5 V (nominally 0 to 100 V), expect near 58.7 V, since DAC is at 5.872 V. Piezo Error = -8.2 V.
17-03-17 22:45:17.038 -07 000000459 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.2 um, Read 10 ADC samples: Avg = 36713 (-175.3 uncal um), Error = 0.9 uncal um, Median = 36714 (-175.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 36702 (-175.2 uncal um), Max = 36720 (-175.3 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 11 (0.1 uncal um)
17-03-17 22:45:17.038 -07 000000459 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36713, posNoise = 7, negNoise = 11
17-03-17 22:45:17.038 -07 000000459 INF: Z Motor: After move to -0.176168, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:45:17.038 -07 000000459 INF: Z Motor: Settle wait time = 1435 ms, measure time = 101 ms (allowed 150 ms), total time = 1536 ms
17-03-17 22:45:17.038 -07 000000459 INF: Z Motor: Waiting extra 49 ms after reading position to reach expected total of 150 ms
17-03-17 22:45:17.088 -07 000000459 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1592 ms
17-03-17 22:45:17.088 -07 000000459 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:45:17.088 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:45:17.088 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:45:17.088 -07 000000478 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:45:17.088 -07 000000551 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:45:17.088 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:45:17.088 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:45:17.088 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 22:45:17.088 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:45:17.098 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:45:17.098 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:45:17.108 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 22:45:17.108 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 22:45:17.108 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:45:17.158 -07 000000551 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:45:17.358 -07 000000551 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:45:17.358 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:45:17.358 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:45:17.358 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 22:45:17.398 -07 000000576 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:45:17.398 -07 000000478 INF: FPGA: Recv CAMSNAP
17-03-17 22:45:17.398 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 285 ms overall
17-03-17 22:45:17.488 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 22:45:17.488 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:45:17.488 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:45:17.488 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 22:45:17.498 -07 000000551 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:45:17.498 -07 000000576 INF: Autofocus start
17-03-17 22:45:17.498 -07 000000576 INF: MeasureProfile start
17-03-17 22:45:17.498 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:45:17.508 -07 000000551 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 22:45:17.508 -07 000000551 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:45:17.518 -07 000000576 INF: MeasureProfile done
17-03-17 22:45:17.518 -07 000000576 INF: X=16  Z correction [um]=0.01042744
17-03-17 22:45:17.518 -07 000000576 INF: Autofocus finished
17-03-17 22:45:17.708 -07 000000576 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:45:17.708 -07 000000551 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:45:17.708 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.3720703125, Z-position -0.176175452371605. ----------
17-03-17 22:45:17.708 -07 000000610 INF: Cycle	67	Tile	10	Exposure Settings		A	459	G	221	T	221	C	459
17-03-17 22:45:17.718 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36999, sync = True, waitForSettling = True)
17-03-17 22:45:17.718 -07 000000610 INF: Z Motor: Moving to -0.169371 mm, started at -0.176175 mm, distance = 6.80 um
17-03-17 22:45:17.718 -07 000000610 INF: FPGA: Xmit ZDACW 36999\n [Z Motor]
17-03-17 22:45:17.718 -07 000000438 INF: FPGA: Recv ZDACW
17-03-17 22:45:17.728 -07 000000610 INF: FPGA: 'ZDACW 36999' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:45:17.728 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:45:17.728 -07 000000551 INF: FPGA: Recv ZDACR 36999
17-03-17 22:45:17.738 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:17.738 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:45:17.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:17.888 -07 000000551 INF: FPGA: Recv ZSGSRD 35654
17-03-17 22:45:17.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:17.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:17.898 -07 000000438 INF: FPGA: Recv ZSGSRD 35654
17-03-17 22:45:17.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:17.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:17.908 -07 000000478 INF: FPGA: Recv ZSGSRD 35649
17-03-17 22:45:17.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:17.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:17.918 -07 000000551 INF: FPGA: Recv ZSGSRD 35654
17-03-17 22:45:17.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:17.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:17.928 -07 000000459 INF: FPGA: Recv ZSGSRD 35660
17-03-17 22:45:17.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:17.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:17.938 -07 000000478 INF: FPGA: Recv ZSGSRD 35650
17-03-17 22:45:17.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:17.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:17.948 -07 000000576 INF: FPGA: Recv ZSGSRD 35653
17-03-17 22:45:17.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:17.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:17.958 -07 000000576 INF: FPGA: Recv ZSGSRD 35658
17-03-17 22:45:17.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:17.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:17.968 -07 000000438 INF: FPGA: Recv ZSGSRD 35649
17-03-17 22:45:17.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:17.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:17.978 -07 000000459 INF: FPGA: Recv ZSGSRD 35659
17-03-17 22:45:17.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:17.988 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:45:17.988 -07 000000438 INF: FPGA: Recv ZPIEZORD 31600
17-03-17 22:45:17.998 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:17.998 -07 000000610 INF: Z Motor: Piezo is near 47.5 V (nominally 0 to 100 V), expect near 56.5 V, since DAC is at 5.646 V. Piezo Error = -9.0 V.
17-03-17 22:45:17.998 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.4 um, Read 10 ADC samples: Avg = 35654 (-168.5 uncal um), Error = 0.9 uncal um, Median = 35654 (-168.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35649 (-168.5 uncal um), Max = 35660 (-168.5 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 22:45:17.998 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35654, posNoise = 6, negNoise = 5
17-03-17 22:45:17.998 -07 000000610 INF: Z Motor: After move to -0.169371, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:45:17.998 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 22:45:17.998 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:45:17.998 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:45:17.998 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:45:17.998 -07 000000459 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:45:17.998 -07 000000551 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:45:17.998 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:45:17.998 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:45:17.998 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:45:17.998 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:45:17.998 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:45:17.998 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 4 ms.
17-03-17 22:45:17.998 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:45:18.008 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 22:45:18.008 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:45:18.008 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 22:45:18.008 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:45:18.018 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 22:45:18.018 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 17 ms.
17-03-17 22:45:18.018 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 22:45:18.018 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms.
17-03-17 22:45:18.018 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 459 459 221 221 37176 150\n [Camera]
17-03-17 22:45:18.218 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:45:18.678 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 651
17-03-17 22:45:18.678 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 651
17-03-17 22:45:18.678 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:45:18.678 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:45:18.678 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 644204472, 0x0, 391868352) start.
17-03-17 22:45:18.678 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 651
17-03-17 22:45:18.678 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 651
17-03-17 22:45:18.678 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:45:18.678 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:45:18.678 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) start.
17-03-17 22:45:18.868 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37176 847
17-03-17 22:45:19.018 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP turning grn on 994
17-03-17 22:45:19.058 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 644204472, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 22:45:19.058 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 22:45:19.058 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:45:19.058 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) end. Duration was 380 ms.
17-03-17 22:45:19.058 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-17 22:45:19.058 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:45:19.068 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:45:19.068 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 22:45:19.068 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:45:19.068 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 22:45:19.238 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1215
17-03-17 22:45:19.238 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1215
17-03-17 22:45:19.238 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:45:19.358 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1215
17-03-17 22:45:19.358 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1215
17-03-17 22:45:19.358 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:45:19.358 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:45:19.358 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 2350877912, 0x0, 391868352) start.
17-03-17 22:45:19.368 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:45:19.368 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-17 22:45:19.428 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP 1408
17-03-17 22:45:19.428 -07 000000433 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:45:19.428 -07 000000610 INF: FPGA: 'CAMDBLSNAP 459 459 221 221 37176 150' command took 2 ms to send, 1409 ms to get response, and 1414 ms overall
17-03-17 22:45:19.438 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 22:45:19.438 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.3720703125, Z-Position -0.16937221171348. ------
17-03-17 22:45:19.438 -07 000000429 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:45:19.438 -07 000000501 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.17575 mm
17-03-17 22:45:19.438 -07 000000501 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:45:19.438 -07 000000551 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-17 22:45:19.438 -07 000000551 INF: Y Motor: Moving to 68.2126 mm, started at 67.3721 mm, delta = 0.8405 mm
17-03-17 22:45:19.438 -07 000000458 INF: Z Motor: Entering MoveAbsStepped (DAC = 38394, sync = True, waitForSettling = False)
17-03-17 22:45:19.438 -07 000000458 INF: Z Motor: Moving to -0.175756 mm, started at -0.169372 mm, distance = -6.38 um
17-03-17 22:45:19.438 -07 000000433 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:45:19.448 -07 000000429 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 22:45:19.448 -07 000000458 INF: FPGA: Xmit ZDACW 38394\n [Z Motor]
17-03-17 22:45:19.448 -07 000000433 INF: FPGA: Recv ZDACW
17-03-17 22:45:19.458 -07 000000458 INF: FPGA: 'ZDACW 38394' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 22:45:19.458 -07 000000429 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:45:19.468 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:45:19.468 -07 000000618 INF: FPGA: Recv YRDPOS 137979
17-03-17 22:45:19.478 -07 000000458 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:45:19.478 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 32 ms overall
17-03-17 22:45:19.478 -07 000000551 INF: Y Motor: Encoder = 137979 = motor step 107796.1 = 67.3726 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:45:19.478 -07 000000618 INF: FPGA: Recv ZDACR 38394
17-03-17 22:45:19.478 -07 000000551 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:45:19.478 -07 000000551 INF: Y Motor: Moving 1344 steps-22
17-03-17 22:45:19.488 -07 000000458 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:45:19.488 -07 000000458 INF: Z Motor: MoveAbsStepped took 42 ms (did NOT wait for settling yet))
17-03-17 22:45:19.488 -07 000000551 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:45:19.658 -07 000000627 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:45:19.658 -07 000000429 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 212 ms overall
17-03-17 22:45:19.748 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 380 ms.
17-03-17 22:45:19.748 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-17 22:45:19.748 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:45:19.748 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 2350877912, 0x0, 391868352) end. Duration was 385 ms.
17-03-17 22:45:19.748 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 22:45:19.748 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:45:19.748 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:45:19.748 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:45:19.748 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 511 ms.
17-03-17 22:45:19.758 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 22:45:19.868 -07 000000486 INF: FPGA: Recv YMVTILE
17-03-17 22:45:19.868 -07 000000551 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 372 ms to get response, and 386 ms overall
17-03-17 22:45:19.908 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:45:19.908 -07 000000438 INF: FPGA: Recv YRDPOS 139685
17-03-17 22:45:19.918 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 22:45:19.918 -07 000000551 INF: Y Motor: Encoder = 139685 = motor step 109128.9 = 68.2056 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:45:19.918 -07 000000551 INF: Y Motor: Position error before settling (table move) = -14 encoder counts (-0.007 mm)
17-03-17 22:45:19.918 -07 000000551 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 386 ms, distance = 0.841 mm, average velocity = 2.178 mm/sec
17-03-17 22:45:20.498 -07 000000458 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 67, FrontChillerTemperature: 4.015368,
17-03-17 22:45:20.868 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:45:20.868 -07 000000627 INF: FPGA: Recv YRDPOS 139685
17-03-17 22:45:20.878 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:45:20.878 -07 000000551 INF: Y Motor: Encoder = 139685 = motor step 109128.9 = 68.2056 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:45:20.898 -07 000000551 INF: Y Motor: After move to 68.212608, error = -0.007042, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:45:20.898 -07 000000551 INF: Y Motor: Position error after settling (table move) = -14 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:45:20.898 -07 000000551 INF: Y Motor: Moved to 68.2056 after 1455 ms (table move)
17-03-17 22:45:20.898 -07 000000501 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175756 mm (DAC = 38394)
17-03-17 22:45:20.898 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:20.898 -07 000000551 INF: FPGA: Recv ZSGSRD 36647
17-03-17 22:45:20.908 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:45:20.908 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:20.908 -07 000000551 INF: FPGA: Recv ZSGSRD 36657
17-03-17 22:45:20.918 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:20.918 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:20.918 -07 000000551 INF: FPGA: Recv ZSGSRD 36647
17-03-17 22:45:20.928 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:20.928 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:20.928 -07 000000551 INF: FPGA: Recv ZSGSRD 36650
17-03-17 22:45:20.938 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:20.938 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:20.938 -07 000000478 INF: FPGA: Recv ZSGSRD 36648
17-03-17 22:45:20.948 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:20.948 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:20.948 -07 000000486 INF: FPGA: Recv ZSGSRD 36653
17-03-17 22:45:20.958 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:45:20.958 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:20.958 -07 000000486 INF: FPGA: Recv ZSGSRD 36645
17-03-17 22:45:20.968 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:20.968 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:20.968 -07 000000486 INF: FPGA: Recv ZSGSRD 36642
17-03-17 22:45:20.978 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:20.978 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:20.978 -07 000000486 INF: FPGA: Recv ZSGSRD 36655
17-03-17 22:45:20.988 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:20.988 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:20.988 -07 000000486 INF: FPGA: Recv ZSGSRD 36656
17-03-17 22:45:20.998 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:20.998 -07 000000501 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:45:20.998 -07 000000486 INF: FPGA: Recv ZPIEZORD 32921
17-03-17 22:45:21.008 -07 000000501 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:21.008 -07 000000501 INF: Z Motor: Piezo is near 50.3 V (nominally 0 to 100 V), expect near 58.6 V, since DAC is at 5.859 V. Piezo Error = -8.3 V.
17-03-17 22:45:21.008 -07 000000501 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.8 um, Read 10 ADC samples: Avg = 36650 (-174.9 uncal um), Error = 0.9 uncal um, Median = 36649 (-174.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 36642 (-174.8 uncal um), Max = 36657 (-174.9 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 22:45:21.008 -07 000000501 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36650, posNoise = 7, negNoise = 8
17-03-17 22:45:21.008 -07 000000501 INF: Z Motor: After move to -0.175756, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:45:21.008 -07 000000501 INF: Z Motor: Settle wait time = 1458 ms, measure time = 104 ms (allowed 150 ms), total time = 1562 ms
17-03-17 22:45:21.008 -07 000000501 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 22:45:21.058 -07 000000501 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1615 ms
17-03-17 22:45:21.058 -07 000000501 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:45:21.058 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:45:21.058 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:45:21.058 -07 000000429 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:45:21.058 -07 000000551 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:45:21.058 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:45:21.058 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:45:21.058 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:45:21.058 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:45:21.068 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-17 22:45:21.068 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:45:21.068 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 22:45:21.068 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-17 22:45:21.078 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:45:21.118 -07 000000459 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:45:21.318 -07 000000459 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:45:21.318 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:45:21.318 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:45:21.318 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1113297000, 0x0, 559484976) start.
17-03-17 22:45:21.358 -07 000000459 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:45:21.358 -07 000000627 INF: FPGA: Recv CAMSNAP
17-03-17 22:45:21.358 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 285 ms overall
17-03-17 22:45:21.448 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1113297000, 0x0, 559484976) end. Duration was 122 ms.
17-03-17 22:45:21.448 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:45:21.448 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 22:45:21.448 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 125 ms.
17-03-17 22:45:21.458 -07 000000459 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:45:21.458 -07 000000627 INF: Autofocus start
17-03-17 22:45:21.458 -07 000000627 INF: MeasureProfile start
17-03-17 22:45:21.458 -07 000000478 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:45:21.468 -07 000000459 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 22:45:21.468 -07 000000459 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:45:21.468 -07 000000627 INF: MeasureProfile done
17-03-17 22:45:21.468 -07 000000627 INF: X=16  Z correction [um]=0.01042744
17-03-17 22:45:21.468 -07 000000627 INF: Autofocus finished
17-03-17 22:45:21.668 -07 000000618 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:45:21.668 -07 000000459 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:45:21.668 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.20556640625, Z-position -0.175770727006674. ----------
17-03-17 22:45:21.668 -07 000000610 INF: Cycle	67	Tile	11	Exposure Settings		A	459	G	221	T	221	C	459
17-03-17 22:45:21.668 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36908, sync = True, waitForSettling = True)
17-03-17 22:45:21.678 -07 000000610 INF: Z Motor: Moving to -0.168954 mm, started at -0.175771 mm, distance = 6.82 um
17-03-17 22:45:21.678 -07 000000610 INF: FPGA: Xmit ZDACW 36908\n [Z Motor]
17-03-17 22:45:21.678 -07 000000459 INF: FPGA: Recv ZDACW
17-03-17 22:45:21.688 -07 000000610 INF: FPGA: 'ZDACW 36908' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:21.688 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:45:21.688 -07 000000618 INF: FPGA: Recv ZDACR 36908
17-03-17 22:45:21.698 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:21.698 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:45:21.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:21.848 -07 000000618 INF: FPGA: Recv ZSGSRD 35588
17-03-17 22:45:21.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:45:21.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:21.858 -07 000000627 INF: FPGA: Recv ZSGSRD 35589
17-03-17 22:45:21.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:21.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:21.868 -07 000000618 INF: FPGA: Recv ZSGSRD 35593
17-03-17 22:45:21.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:21.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:21.878 -07 000000627 INF: FPGA: Recv ZSGSRD 35592
17-03-17 22:45:21.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:21.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:21.888 -07 000000459 INF: FPGA: Recv ZSGSRD 35594
17-03-17 22:45:21.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:21.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:21.898 -07 000000459 INF: FPGA: Recv ZSGSRD 35588
17-03-17 22:45:21.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:21.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:21.908 -07 000000459 INF: FPGA: Recv ZSGSRD 35592
17-03-17 22:45:21.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:21.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:21.918 -07 000000478 INF: FPGA: Recv ZSGSRD 35589
17-03-17 22:45:21.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:21.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:21.928 -07 000000478 INF: FPGA: Recv ZSGSRD 35590
17-03-17 22:45:21.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:21.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:21.938 -07 000000618 INF: FPGA: Recv ZSGSRD 35588
17-03-17 22:45:21.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:21.948 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:45:21.948 -07 000000478 INF: FPGA: Recv ZPIEZORD 31522
17-03-17 22:45:21.958 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:21.958 -07 000000610 INF: Z Motor: Piezo is near 47.3 V (nominally 0 to 100 V), expect near 56.3 V, since DAC is at 5.632 V. Piezo Error = -9.0 V.
17-03-17 22:45:21.958 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.0 um, Read 10 ADC samples: Avg = 35590 (-168.1 uncal um), Error = 0.9 uncal um, Median = 35590 (-168.1 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 35588 (-168.1 uncal um), Max = 35594 (-168.1 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 2 (0.0 uncal um)
17-03-17 22:45:21.958 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35590, posNoise = 4, negNoise = 2
17-03-17 22:45:21.958 -07 000000610 INF: Z Motor: After move to -0.168954, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:45:21.958 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 22:45:21.958 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:45:21.958 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:45:21.958 -07 000000627 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:45:21.958 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:45:21.958 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:45:21.958 -07 000000459 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:45:21.958 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:45:21.958 -07 000000478 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:45:21.958 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:45:21.958 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:45:21.958 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:45:21.958 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:45:21.958 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:45:21.958 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:45:21.958 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:45:21.958 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:45:21.968 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 22:45:21.968 -07 000000627 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 22:45:21.968 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 22:45:21.968 -07 000000459 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 22:45:21.978 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 459 459 221 221 37085 150\n [Camera]
17-03-17 22:45:21.998 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:45:21.998 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 66. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1047, R2=1076, Total=2123. Warn if over 250 bubbles per interval.
17-03-17 22:45:22.178 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP turning red on 193
17-03-17 22:45:22.628 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 651
17-03-17 22:45:22.638 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 651
17-03-17 22:45:22.638 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:45:22.638 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 651
17-03-17 22:45:22.638 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 651
17-03-17 22:45:22.638 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:45:22.638 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:45:22.638 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 1132378384, 0x0, 391868352) start.
17-03-17 22:45:22.638 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:45:22.638 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 22:45:22.828 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37085 844
17-03-17 22:45:22.978 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning grn on 994
17-03-17 22:45:23.018 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 1132378384, 0x0, 391868352) end. Duration was 375 ms.
17-03-17 22:45:23.018 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 375 ms.
17-03-17 22:45:23.018 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:45:23.018 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 22:45:23.018 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 22:45:23.018 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:45:23.018 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:45:23.018 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 22:45:23.018 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:45:23.028 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 22:45:23.198 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1215
17-03-17 22:45:23.198 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1215
17-03-17 22:45:23.198 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:45:23.308 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1215
17-03-17 22:45:23.308 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1215
17-03-17 22:45:23.308 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:45:23.318 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:45:23.318 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-17 22:45:23.318 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:45:23.318 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 22:45:23.388 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP 1408
17-03-17 22:45:23.388 -07 000000618 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:45:23.388 -07 000000610 INF: FPGA: 'CAMDBLSNAP 459 459 221 221 37085 150' command took 2 ms to send, 1406 ms to get response, and 1415 ms overall
17-03-17 22:45:23.388 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 22:45:23.388 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.20556640625, Z-Position -0.168961062136407. ------
17-03-17 22:45:23.398 -07 000000459 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.17559 mm
17-03-17 22:45:23.398 -07 000000459 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:45:23.398 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:45:23.398 -07 000000486 INF: Z Motor: Entering MoveAbsStepped (DAC = 38357, sync = True, waitForSettling = False)
17-03-17 22:45:23.398 -07 000000561 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-17 22:45:23.398 -07 000000561 INF: Y Motor: Moving to 69.0426 mm, started at 68.2056 mm, delta = 0.8370 mm
17-03-17 22:45:23.398 -07 000000482 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:45:23.398 -07 000000486 INF: Z Motor: Moving to -0.175587 mm, started at -0.168961 mm, distance = -6.63 um
17-03-17 22:45:23.408 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:45:23.408 -07 000000486 INF: FPGA: Xmit ZDACW 38357\n [Z Motor]
17-03-17 22:45:23.408 -07 000000475 INF: FPGA: Recv ZDACW
17-03-17 22:45:23.418 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:45:23.418 -07 000000486 INF: FPGA: 'ZDACW 38357' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 22:45:23.418 -07 000000482 INF: FPGA: Recv YRDPOS 139685
17-03-17 22:45:23.428 -07 000000512 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:45:23.428 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-17 22:45:23.428 -07 000000561 INF: Y Motor: Encoder = 139685 = motor step 109128.9 = 68.2056 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:45:23.428 -07 000000561 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:45:23.428 -07 000000561 INF: Y Motor: Moving 1339 steps-14
17-03-17 22:45:23.438 -07 000000486 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:45:23.438 -07 000000458 INF: FPGA: Recv ZDACR 38357
17-03-17 22:45:23.448 -07 000000561 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:45:23.448 -07 000000486 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:45:23.448 -07 000000486 INF: Z Motor: MoveAbsStepped took 45 ms (did NOT wait for settling yet))
17-03-17 22:45:23.628 -07 000000482 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:45:23.628 -07 000000512 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 22:45:23.698 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 22:45:23.698 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-17 22:45:23.698 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:45:23.698 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:45:23.708 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 383 ms.
17-03-17 22:45:23.708 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 22:45:23.708 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:45:23.708 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:45:23.708 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 509 ms.
17-03-17 22:45:23.708 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 22:45:23.818 -07 000000433 INF: FPGA: Recv YMVTILE
17-03-17 22:45:23.818 -07 000000561 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-17 22:45:23.858 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:45:23.868 -07 000000627 INF: FPGA: Recv YRDPOS 141368
17-03-17 22:45:23.868 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 22:45:23.868 -07 000000561 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:45:23.868 -07 000000561 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-17 22:45:23.868 -07 000000561 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.837 mm, average velocity = 2.119 mm/sec
17-03-17 22:45:24.818 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:45:24.818 -07 000000475 INF: FPGA: Recv YRDPOS 141368
17-03-17 22:45:24.828 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:45:24.828 -07 000000561 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:45:24.848 -07 000000561 INF: Y Motor: After move to 69.042610, error = -0.015266, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:45:24.848 -07 000000561 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:45:24.848 -07 000000561 INF: Y Motor: Moved to 69.0273 after 1450 ms (table move)
17-03-17 22:45:24.848 -07 000000459 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175587 mm (DAC = 38357)
17-03-17 22:45:24.848 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:24.858 -07 000000478 INF: FPGA: Recv ZSGSRD 36630
17-03-17 22:45:24.858 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 22:45:24.858 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:24.858 -07 000000482 INF: FPGA: Recv ZSGSRD 36620
17-03-17 22:45:24.868 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:45:24.868 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:24.868 -07 000000576 INF: FPGA: Recv ZSGSRD 36620
17-03-17 22:45:24.878 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:24.878 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:24.878 -07 000000512 INF: FPGA: Recv ZSGSRD 36622
17-03-17 22:45:24.888 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:24.888 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:24.888 -07 000000627 INF: FPGA: Recv ZSGSRD 36627
17-03-17 22:45:24.898 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:24.898 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:24.898 -07 000000482 INF: FPGA: Recv ZSGSRD 36627
17-03-17 22:45:24.908 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:24.908 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:24.908 -07 000000433 INF: FPGA: Recv ZSGSRD 36628
17-03-17 22:45:24.918 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:24.918 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:24.918 -07 000000561 INF: FPGA: Recv ZSGSRD 36621
17-03-17 22:45:24.928 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:24.928 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:24.928 -07 000000576 INF: FPGA: Recv ZSGSRD 36620
17-03-17 22:45:24.938 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:24.938 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:24.938 -07 000000627 INF: FPGA: Recv ZSGSRD 36623
17-03-17 22:45:24.948 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:24.948 -07 000000459 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:45:24.948 -07 000000433 INF: FPGA: Recv ZPIEZORD 32939
17-03-17 22:45:24.958 -07 000000459 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:24.958 -07 000000459 INF: Z Motor: Piezo is near 50.4 V (nominally 0 to 100 V), expect near 58.5 V, since DAC is at 5.853 V. Piezo Error = -8.2 V.
17-03-17 22:45:24.958 -07 000000459 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.6 um, Read 10 ADC samples: Avg = 36624 (-174.7 uncal um), Error = 0.9 uncal um, Median = 36622 (-174.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 36620 (-174.7 uncal um), Max = 36630 (-174.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 22:45:24.958 -07 000000459 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36624, posNoise = 6, negNoise = 4
17-03-17 22:45:24.958 -07 000000459 INF: Z Motor: After move to -0.175587, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:45:24.958 -07 000000459 INF: Z Motor: Settle wait time = 1452 ms, measure time = 102 ms (allowed 150 ms), total time = 1554 ms
17-03-17 22:45:24.958 -07 000000459 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 22:45:25.008 -07 000000459 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1607 ms
17-03-17 22:45:25.008 -07 000000459 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:45:25.008 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:45:25.008 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:45:25.008 -07 000000478 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:45:25.008 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:45:25.008 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:45:25.008 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:45:25.008 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 22:45:25.008 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:45:25.008 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:45:25.018 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:45:25.018 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 22:45:25.018 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 22:45:25.018 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:45:25.068 -07 000000438 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:45:25.268 -07 000000618 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:45:25.268 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:45:25.268 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:45:25.268 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1113297000, 0x0, 559484976) start.
17-03-17 22:45:25.308 -07 000000547 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:45:25.308 -07 000000627 INF: FPGA: Recv CAMSNAP
17-03-17 22:45:25.308 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 274 ms to get response, and 284 ms overall
17-03-17 22:45:25.388 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1113297000, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 22:45:25.388 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:45:25.388 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:45:25.388 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 22:45:25.408 -07 000000458 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:45:25.408 -07 000000475 INF: Autofocus start
17-03-17 22:45:25.408 -07 000000475 INF: MeasureProfile start
17-03-17 22:45:25.408 -07 000000429 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:45:25.418 -07 000000458 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:45:25.418 -07 000000458 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:45:25.418 -07 000000475 INF: MeasureProfile done
17-03-17 22:45:25.418 -07 000000475 INF: X=48  Z correction [um]=0.1739867
17-03-17 22:45:25.418 -07 000000475 INF: Autofocus finished
17-03-17 22:45:25.618 -07 000000429 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:45:25.618 -07 000000458 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:45:25.618 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02734375, Z-position -0.175603697490988. ----------
17-03-17 22:45:25.618 -07 000000610 INF: Cycle	67	Tile	12	Exposure Settings		A	459	G	221	T	221	C	459
17-03-17 22:45:25.628 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36908, sync = True, waitForSettling = True)
17-03-17 22:45:25.628 -07 000000610 INF: Z Motor: Moving to -0.168954 mm, started at -0.175604 mm, distance = 6.65 um
17-03-17 22:45:25.628 -07 000000610 INF: FPGA: Xmit ZDACW 36908\n [Z Motor]
17-03-17 22:45:25.628 -07 000000576 INF: FPGA: Recv ZDACW
17-03-17 22:45:25.638 -07 000000610 INF: FPGA: 'ZDACW 36908' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:45:25.638 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:45:25.638 -07 000000459 INF: FPGA: Recv ZDACR 36908
17-03-17 22:45:25.648 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:25.648 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:45:25.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:25.798 -07 000000627 INF: FPGA: Recv ZSGSRD 35594
17-03-17 22:45:25.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:45:25.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:25.808 -07 000000438 INF: FPGA: Recv ZSGSRD 35589
17-03-17 22:45:25.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:25.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:25.818 -07 000000561 INF: FPGA: Recv ZSGSRD 35590
17-03-17 22:45:25.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:25.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:25.828 -07 000000547 INF: FPGA: Recv ZSGSRD 35587
17-03-17 22:45:25.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:25.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:25.838 -07 000000576 INF: FPGA: Recv ZSGSRD 35594
17-03-17 22:45:25.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:25.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:25.848 -07 000000429 INF: FPGA: Recv ZSGSRD 35594
17-03-17 22:45:25.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:25.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:25.868 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 67, FrontChillerTemperature: 4.003063,
17-03-17 22:45:25.868 -07 000000429 INF: FPGA: Recv ZSGSRD 35595
17-03-17 22:45:25.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:45:25.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:25.888 -07 000000576 INF: FPGA: Recv ZSGSRD 35591
17-03-17 22:45:25.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:45:25.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:25.918 -07 000000547 INF: FPGA: Recv ZSGSRD 35598
17-03-17 22:45:25.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:45:25.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:25.938 -07 000000547 INF: FPGA: Recv ZSGSRD 35590
17-03-17 22:45:25.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:45:25.948 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:45:25.948 -07 000000429 INF: FPGA: Recv ZPIEZORD 31538
17-03-17 22:45:25.958 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:25.958 -07 000000610 INF: Z Motor: Piezo is near 47.4 V (nominally 0 to 100 V), expect near 56.3 V, since DAC is at 5.632 V. Piezo Error = -8.9 V.
17-03-17 22:45:25.958 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.0 um, Read 10 ADC samples: Avg = 35592 (-168.1 uncal um), Error = 0.9 uncal um, Median = 35592 (-168.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35587 (-168.1 uncal um), Max = 35598 (-168.1 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 22:45:25.958 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35592, posNoise = 6, negNoise = 5
17-03-17 22:45:25.958 -07 000000610 INF: Z Motor: After move to -0.168954, error = -0.000020, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:45:25.958 -07 000000610 INF: Z Motor: MoveAbsStepped took 328 ms)
17-03-17 22:45:25.958 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:45:25.958 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:45:25.958 -07 000000547 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:45:25.958 -07 000000429 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:45:25.958 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:45:25.958 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:45:25.958 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:45:25.958 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:45:25.958 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 22:45:25.958 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:45:25.958 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 22:45:25.958 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:45:25.968 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 22:45:25.968 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:45:25.968 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 22:45:25.968 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:45:25.968 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 22:45:25.968 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 12 ms.
17-03-17 22:45:25.978 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 22:45:25.978 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 22:45:25.978 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 459 459 221 221 37084 150\n [Camera]
17-03-17 22:45:26.178 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning red on 194
17-03-17 22:45:26.638 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 651
17-03-17 22:45:26.638 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 651
17-03-17 22:45:26.638 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:45:26.638 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 651
17-03-17 22:45:26.638 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 651
17-03-17 22:45:26.638 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:45:26.638 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:45:26.638 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 1136783688, 0x0, 391868352) start.
17-03-17 22:45:26.638 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:45:26.648 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 22:45:26.828 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37084 844
17-03-17 22:45:26.978 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning grn on 994
17-03-17 22:45:26.998 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:45:26.998 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 66. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1047, R2=1076, Total=2123. Warn if over 250 bubbles per interval.
17-03-17 22:45:27.028 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 382 ms.
17-03-17 22:45:27.028 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-17 22:45:27.028 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:45:27.028 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 1136783688, 0x0, 391868352) end. Duration was 386 ms.
17-03-17 22:45:27.028 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 22:45:27.028 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:45:27.028 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:45:27.028 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:45:27.028 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 22:45:27.138 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 503 ms.
17-03-17 22:45:27.198 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1215
17-03-17 22:45:27.198 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1215
17-03-17 22:45:27.198 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:45:27.198 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1215
17-03-17 22:45:27.198 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1215
17-03-17 22:45:27.198 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:45:27.208 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:45:27.208 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 22:45:27.208 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:45:27.208 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-17 22:45:27.388 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP 1408
17-03-17 22:45:27.388 -07 000000429 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:45:27.388 -07 000000610 INF: FPGA: 'CAMDBLSNAP 459 459 221 221 37084 150' command took 2 ms to send, 1406 ms to get response, and 1415 ms overall
17-03-17 22:45:27.388 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 22:45:27.388 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.02734375, Z-Position -0.168973910560691. ------
17-03-17 22:45:27.398 -07 000000551 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:45:27.398 -07 000000429 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.17533 mm
17-03-17 22:45:27.398 -07 000000429 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:45:27.398 -07 000000478 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:45:27.398 -07 000000501 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-17 22:45:27.398 -07 000000501 INF: Y Motor: Moving to 69.8726 mm, started at 69.0273 mm, delta = 0.8453 mm
17-03-17 22:45:27.398 -07 000000547 INF: Z Motor: Entering MoveAbsStepped (DAC = 38301, sync = True, waitForSettling = False)
17-03-17 22:45:27.398 -07 000000547 INF: Z Motor: Moving to -0.175331 mm, started at -0.168974 mm, distance = -6.36 um
17-03-17 22:45:27.408 -07 000000551 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:45:27.408 -07 000000547 INF: FPGA: Xmit ZDACW 38301\n [Z Motor]
17-03-17 22:45:27.408 -07 000000618 INF: FPGA: Recv ZDACW
17-03-17 22:45:27.418 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:45:27.418 -07 000000547 INF: FPGA: 'ZDACW 38301' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 22:45:27.418 -07 000000512 INF: FPGA: Recv YRDPOS 141369
17-03-17 22:45:27.428 -07 000000551 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:45:27.428 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-17 22:45:27.428 -07 000000501 INF: Y Motor: Encoder = 141369 = motor step 110444.5 = 69.0278 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:45:27.428 -07 000000501 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:45:27.428 -07 000000501 INF: Y Motor: Moving 1352 steps-31
17-03-17 22:45:27.438 -07 000000547 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:45:27.438 -07 000000459 INF: FPGA: Recv ZDACR 38301
17-03-17 22:45:27.448 -07 000000547 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:45:27.448 -07 000000547 INF: Z Motor: MoveAbsStepped took 42 ms (did NOT wait for settling yet))
17-03-17 22:45:27.448 -07 000000501 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:45:27.608 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 400 ms.
17-03-17 22:45:27.608 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 22:45:27.608 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:45:27.608 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 399 ms.
17-03-17 22:45:27.608 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 22:45:27.608 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:45:27.608 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:45:27.608 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-17 22:45:27.608 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:45:27.618 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-17 22:45:27.628 -07 000000512 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:45:27.628 -07 000000551 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 22:45:27.818 -07 000000475 INF: FPGA: Recv YMVTILE
17-03-17 22:45:27.818 -07 000000501 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-17 22:45:27.858 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:45:27.868 -07 000000433 INF: FPGA: Recv YRDPOS 143080
17-03-17 22:45:27.868 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 4 ms overall
17-03-17 22:45:27.868 -07 000000501 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:45:27.868 -07 000000501 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-17 22:45:27.868 -07 000000501 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.845 mm, average velocity = 2.140 mm/sec
17-03-17 22:45:28.818 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:45:28.818 -07 000000433 INF: FPGA: Recv YRDPOS 143081
17-03-17 22:45:28.828 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:45:28.828 -07 000000501 INF: Y Motor: Encoder = 143081 = motor step 111782.0 = 69.8638 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:45:28.848 -07 000000501 INF: Y Motor: After move to 69.872612, error = -0.008842, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:45:28.848 -07 000000501 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 22:45:28.848 -07 000000501 INF: Y Motor: Moved to 69.8638 after 1446 ms (table move)
17-03-17 22:45:28.848 -07 000000429 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175331 mm (DAC = 38301)
17-03-17 22:45:28.848 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:28.858 -07 000000459 INF: FPGA: Recv ZSGSRD 36594
17-03-17 22:45:28.858 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 22:45:28.858 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:28.858 -07 000000551 INF: FPGA: Recv ZSGSRD 36581
17-03-17 22:45:28.868 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:45:28.868 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:28.868 -07 000000459 INF: FPGA: Recv ZSGSRD 36582
17-03-17 22:45:28.878 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:28.878 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:28.878 -07 000000618 INF: FPGA: Recv ZSGSRD 36590
17-03-17 22:45:28.888 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:28.888 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:28.888 -07 000000551 INF: FPGA: Recv ZSGSRD 36588
17-03-17 22:45:28.898 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:28.898 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:28.898 -07 000000438 INF: FPGA: Recv ZSGSRD 36585
17-03-17 22:45:28.908 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:28.908 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:28.908 -07 000000551 INF: FPGA: Recv ZSGSRD 36585
17-03-17 22:45:28.918 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:28.918 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:28.918 -07 000000482 INF: FPGA: Recv ZSGSRD 36575
17-03-17 22:45:28.928 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:28.928 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:28.928 -07 000000459 INF: FPGA: Recv ZSGSRD 36582
17-03-17 22:45:28.938 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:28.938 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:28.938 -07 000000627 INF: FPGA: Recv ZSGSRD 36581
17-03-17 22:45:28.948 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:28.948 -07 000000429 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:45:28.948 -07 000000551 INF: FPGA: Recv ZPIEZORD 32863
17-03-17 22:45:28.958 -07 000000429 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:28.958 -07 000000429 INF: Z Motor: Piezo is near 50.2 V (nominally 0 to 100 V), expect near 58.4 V, since DAC is at 5.844 V. Piezo Error = -8.2 V.
17-03-17 22:45:28.958 -07 000000429 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.3 um, Read 10 ADC samples: Avg = 36584 (-174.5 uncal um), Error = 0.9 uncal um, Median = 36584 (-174.5 uncal um), StdDev = 5 (0.0 uncal um), Range = 19 (0.1 uncal um), Min = 36575 (-174.4 uncal um), Max = 36594 (-174.5 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 22:45:28.958 -07 000000429 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36584, posNoise = 10, negNoise = 9
17-03-17 22:45:28.958 -07 000000429 INF: Z Motor: After move to -0.175331, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:45:28.958 -07 000000429 INF: Z Motor: Settle wait time = 1450 ms, measure time = 102 ms (allowed 150 ms), total time = 1552 ms
17-03-17 22:45:28.958 -07 000000429 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 22:45:29.008 -07 000000429 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1606 ms
17-03-17 22:45:29.008 -07 000000429 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:45:29.008 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:45:29.008 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:45:29.008 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:45:29.008 -07 000000551 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:45:29.008 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:45:29.008 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:45:29.008 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:45:29.008 -07 000000551 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:45:29.018 -07 000000551 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:45:29.018 -07 000000551 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:45:29.028 -07 000000551 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 22:45:29.028 -07 000000551 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 22:45:29.028 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:45:29.078 -07 000000429 INF: FPGA: Recv @CAMSNAP turning led on 43
17-03-17 22:45:29.278 -07 000000576 INF: FPGA: Recv @CAMSNAP img rdy 243
17-03-17 22:45:29.278 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 243
17-03-17 22:45:29.278 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:45:29.278 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1113297000, 0x0, 559484976) start.
17-03-17 22:45:29.308 -07 000000547 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:45:29.318 -07 000000627 INF: FPGA: Recv CAMSNAP
17-03-17 22:45:29.318 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 285 ms overall
17-03-17 22:45:29.408 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1113297000, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 22:45:29.408 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:45:29.408 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:45:29.408 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 22:45:29.418 -07 000000475 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:45:29.418 -07 000000547 INF: Autofocus start
17-03-17 22:45:29.418 -07 000000547 INF: MeasureProfile start
17-03-17 22:45:29.418 -07 000000433 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:45:29.428 -07 000000475 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:45:29.428 -07 000000475 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:45:29.428 -07 000000547 INF: MeasureProfile done
17-03-17 22:45:29.428 -07 000000547 INF: X=-32  Z correction [um]=-0.2344
17-03-17 22:45:29.428 -07 000000547 INF: Autofocus finished
17-03-17 22:45:29.628 -07 000000576 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:45:29.628 -07 000000475 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 203 ms overall
17-03-17 22:45:29.638 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86376953125, Z-position -0.175346729005318. ----------
17-03-17 22:45:29.638 -07 000000610 INF: Cycle	67	Tile	13	Exposure Settings		A	459	G	221	T	221	C	459
17-03-17 22:45:29.638 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36762, sync = True, waitForSettling = True)
17-03-17 22:45:29.638 -07 000000610 INF: Z Motor: Moving to -0.168286 mm, started at -0.175347 mm, distance = 7.06 um
17-03-17 22:45:29.638 -07 000000610 INF: FPGA: Xmit ZDACW 36762\n [Z Motor]
17-03-17 22:45:29.648 -07 000000551 INF: FPGA: Recv ZDACW
17-03-17 22:45:29.648 -07 000000610 INF: FPGA: 'ZDACW 36762' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 22:45:29.648 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:45:29.648 -07 000000478 INF: FPGA: Recv ZDACR 36762
17-03-17 22:45:29.658 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:45:29.658 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:45:29.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:29.808 -07 000000433 INF: FPGA: Recv ZSGSRD 35486
17-03-17 22:45:29.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:45:29.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:29.818 -07 000000482 INF: FPGA: Recv ZSGSRD 35487
17-03-17 22:45:29.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:29.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:29.828 -07 000000547 INF: FPGA: Recv ZSGSRD 35487
17-03-17 22:45:29.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:29.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:29.838 -07 000000475 INF: FPGA: Recv ZSGSRD 35490
17-03-17 22:45:29.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:29.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:29.848 -07 000000433 INF: FPGA: Recv ZSGSRD 35488
17-03-17 22:45:29.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:29.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:29.858 -07 000000618 INF: FPGA: Recv ZSGSRD 35484
17-03-17 22:45:29.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:29.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:29.868 -07 000000459 INF: FPGA: Recv ZSGSRD 35489
17-03-17 22:45:29.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:29.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:29.878 -07 000000475 INF: FPGA: Recv ZSGSRD 35493
17-03-17 22:45:29.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:29.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:29.888 -07 000000433 INF: FPGA: Recv ZSGSRD 35485
17-03-17 22:45:29.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:29.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:29.898 -07 000000482 INF: FPGA: Recv ZSGSRD 35482
17-03-17 22:45:29.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:29.908 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:45:29.908 -07 000000501 INF: FPGA: Recv ZPIEZORD 31399
17-03-17 22:45:29.918 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:29.918 -07 000000610 INF: Z Motor: Piezo is near 47.1 V (nominally 0 to 100 V), expect near 56.1 V, since DAC is at 5.610 V. Piezo Error = -9.0 V.
17-03-17 22:45:29.918 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.3 um, Read 10 ADC samples: Avg = 35487 (-167.4 uncal um), Error = 0.9 uncal um, Median = 35487 (-167.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35482 (-167.4 uncal um), Max = 35493 (-167.5 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 22:45:29.918 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35487, posNoise = 6, negNoise = 5
17-03-17 22:45:29.918 -07 000000610 INF: Z Motor: After move to -0.168286, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:45:29.918 -07 000000610 INF: Z Motor: MoveAbsStepped took 272 ms)
17-03-17 22:45:29.918 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:45:29.918 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:45:29.918 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:45:29.918 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:45:29.918 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:45:29.918 -07 000000459 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:45:29.918 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:45:29.918 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:45:29.918 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 22:45:29.918 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:45:29.918 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:45:29.918 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:45:29.928 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 22:45:29.928 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:45:29.928 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:45:29.928 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:45:29.938 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 22:45:29.938 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 22:45:29.938 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 22:45:29.938 -07 000000459 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 22:45:29.938 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 459 459 221 221 36939 150\n [Camera]
17-03-17 22:45:30.138 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:45:30.598 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 651
17-03-17 22:45:30.598 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 651
17-03-17 22:45:30.598 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:45:30.598 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 651
17-03-17 22:45:30.598 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 651
17-03-17 22:45:30.598 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:45:30.608 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:45:30.608 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 1136783688, 0x0, 391868352) start.
17-03-17 22:45:30.608 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:45:30.608 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 22:45:30.788 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36939 844
17-03-17 22:45:30.948 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning grn on 996
17-03-17 22:45:30.988 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 1136783688, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 22:45:30.988 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 22:45:30.988 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:45:30.988 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 380 ms.
17-03-17 22:45:30.988 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-17 22:45:30.988 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:45:30.988 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:45:30.988 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 22:45:30.988 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:45:30.998 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 22:45:31.158 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1215
17-03-17 22:45:31.158 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1215
17-03-17 22:45:31.158 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:45:31.268 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1215
17-03-17 22:45:31.268 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1215
17-03-17 22:45:31.278 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:45:31.278 -07 000000478 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 67, FrontChillerTemperature: 4.009895,
17-03-17 22:45:31.278 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:45:31.278 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-17 22:45:31.278 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:45:31.278 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 22:45:31.348 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP 1407
17-03-17 22:45:31.348 -07 000000576 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:45:31.348 -07 000000610 INF: FPGA: 'CAMDBLSNAP 459 459 221 221 36939 150' command took 2 ms to send, 1408 ms to get response, and 1414 ms overall
17-03-17 22:45:31.358 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 22:45:31.358 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.86376953125, Z-Position -0.168299368285806. ------
17-03-17 22:45:31.358 -07 000000478 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.17469 mm
17-03-17 22:45:31.358 -07 000000478 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:45:31.358 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:45:31.668 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 389 ms.
17-03-17 22:45:31.668 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 22:45:31.668 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:45:31.678 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 390 ms.
17-03-17 22:45:31.678 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 22:45:31.678 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:45:31.678 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:45:31.678 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 516 ms.
17-03-17 22:45:31.678 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:45:31.688 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-17 22:45:31.688 -07 000000482 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-17 22:45:31.688 -07 000000482 INF: Y Motor: Moving to 70.7026 mm, started at 69.8638 mm, delta = 0.8388 mm
17-03-17 22:45:31.688 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:45:31.698 -07 000000433 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:45:31.698 -07 000000433 INF: FPGA: Recv YRDPOS 143081
17-03-17 22:45:31.698 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 330 ms to get response, and 337 ms overall
17-03-17 22:45:31.698 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:45:31.698 -07 000000482 INF: Y Motor: Encoder = 143081 = motor step 111782.0 = 69.8638 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:45:31.698 -07 000000482 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:45:31.698 -07 000000482 INF: Y Motor: Moving 1342 steps-19
17-03-17 22:45:31.698 -07 000000433 INF: Z Motor: Entering MoveAbsStepped (DAC = 38160, sync = True, waitForSettling = False)
17-03-17 22:45:31.698 -07 000000433 INF: Z Motor: Moving to -0.174685 mm, started at -0.168299 mm, distance = -6.39 um
17-03-17 22:45:31.698 -07 000000576 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:45:31.708 -07 000000482 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:45:31.718 -07 000000433 INF: FPGA: Xmit ZDACW 38160\n [Z Motor]
17-03-17 22:45:32.488 -07 000000486 INF: FPGA: Recv ZDACW
17-03-17 22:45:32.488 -07 000000486 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:45:32.488 -07 000000486 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:45:32.488 -07 000000486 INF: FPGA: Recv YMVTILE
17-03-17 22:45:32.488 -07 000000576 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 780 ms to get response, and 789 ms overall
17-03-17 22:45:32.488 -07 000000482 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 770 ms to get response, and 789 ms overall
17-03-17 22:45:32.488 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 66. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1047, R2=1076, Total=2123. Warn if over 250 bubbles per interval.
17-03-17 22:45:32.488 -07 000000433 INF: FPGA: 'ZDACW 38160' command took 0 ms to send, 760 ms to get response, and 788 ms overall
17-03-17 22:45:32.488 -07 000000433 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:45:32.488 -07 000000576 INF: FPGA: Recv ZDACR 38160
17-03-17 22:45:32.498 -07 000000433 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:45:32.498 -07 000000433 INF: Z Motor: MoveAbsStepped took 798 ms (did NOT wait for settling yet))
17-03-17 22:45:32.528 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:45:32.528 -07 000000433 INF: FPGA: Recv YRDPOS 144770
17-03-17 22:45:32.538 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:45:32.538 -07 000000482 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:45:32.538 -07 000000482 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-17 22:45:32.538 -07 000000482 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 789 ms, distance = 0.839 mm, average velocity = 1.063 mm/sec
17-03-17 22:45:33.488 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:45:33.488 -07 000000486 INF: FPGA: Recv YRDPOS 144771
17-03-17 22:45:33.498 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:45:33.498 -07 000000482 INF: Y Motor: Encoder = 144771 = motor step 113102.3 = 70.6890 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:45:33.518 -07 000000482 INF: Y Motor: After move to 70.702606, error = -0.013641, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:45:33.518 -07 000000482 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 22:45:33.518 -07 000000482 INF: Y Motor: Moved to 70.6890 after 1829 ms (table move)
17-03-17 22:45:33.528 -07 000000478 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174685 mm (DAC = 38160)
17-03-17 22:45:33.528 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:33.528 -07 000000433 INF: FPGA: Recv ZSGSRD 36484
17-03-17 22:45:33.538 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:33.538 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:33.538 -07 000000561 INF: FPGA: Recv ZSGSRD 36481
17-03-17 22:45:33.548 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:33.548 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:33.548 -07 000000458 INF: FPGA: Recv ZSGSRD 36488
17-03-17 22:45:33.558 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:33.558 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:33.558 -07 000000561 INF: FPGA: Recv ZSGSRD 36485
17-03-17 22:45:33.568 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:33.568 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:33.568 -07 000000458 INF: FPGA: Recv ZSGSRD 36475
17-03-17 22:45:33.578 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:33.578 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:33.578 -07 000000576 INF: FPGA: Recv ZSGSRD 36486
17-03-17 22:45:33.588 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:33.588 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:33.588 -07 000000561 INF: FPGA: Recv ZSGSRD 36477
17-03-17 22:45:33.598 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:33.598 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:33.598 -07 000000501 INF: FPGA: Recv ZSGSRD 36483
17-03-17 22:45:33.608 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:33.608 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:33.608 -07 000000486 INF: FPGA: Recv ZSGSRD 36478
17-03-17 22:45:33.618 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:33.618 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:33.618 -07 000000561 INF: FPGA: Recv ZSGSRD 36483
17-03-17 22:45:33.628 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:33.628 -07 000000478 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:45:33.628 -07 000000458 INF: FPGA: Recv ZPIEZORD 32750
17-03-17 22:45:33.638 -07 000000478 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:33.638 -07 000000478 INF: Z Motor: Piezo is near 50.0 V (nominally 0 to 100 V), expect near 58.2 V, since DAC is at 5.823 V. Piezo Error = -8.3 V.
17-03-17 22:45:33.638 -07 000000478 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.7 um, Read 10 ADC samples: Avg = 36482 (-173.8 uncal um), Error = 0.9 uncal um, Median = 36483 (-173.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36475 (-173.8 uncal um), Max = 36488 (-173.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 22:45:33.638 -07 000000478 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36482, posNoise = 6, negNoise = 7
17-03-17 22:45:33.638 -07 000000478 INF: Z Motor: After move to -0.174685, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:45:33.638 -07 000000478 INF: Z Motor: Settle wait time = 1828 ms, measure time = 110 ms (allowed 150 ms), total time = 1938 ms
17-03-17 22:45:33.638 -07 000000478 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-17 22:45:33.678 -07 000000478 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2316 ms
17-03-17 22:45:33.678 -07 000000478 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:45:33.678 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:45:33.678 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:45:33.678 -07 000000486 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:45:33.678 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:45:33.678 -07 000000458 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:45:33.678 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:45:33.688 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:45:33.688 -07 000000458 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:45:33.688 -07 000000458 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 22:45:33.688 -07 000000458 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:45:33.698 -07 000000458 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 22:45:33.698 -07 000000458 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 22:45:33.698 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:45:33.738 -07 000000433 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:45:33.938 -07 000000501 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:45:33.938 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:45:33.948 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:45:33.948 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1113297000, 0x0, 559484976) start.
17-03-17 22:45:33.978 -07 000000561 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:45:33.978 -07 000000576 INF: FPGA: Recv CAMSNAP
17-03-17 22:45:33.978 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 284 ms overall
17-03-17 22:45:34.068 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1113297000, 0x0, 559484976) end. Duration was 120 ms.
17-03-17 22:45:34.068 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:45:34.068 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:45:34.068 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 125 ms.
17-03-17 22:45:34.078 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:45:34.078 -07 000000561 INF: Autofocus start
17-03-17 22:45:34.078 -07 000000561 INF: MeasureProfile start
17-03-17 22:45:34.078 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:45:34.088 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 22:45:34.088 -07 000000501 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:45:34.088 -07 000000561 INF: MeasureProfile done
17-03-17 22:45:34.088 -07 000000561 INF: X=16  Z correction [um]=0.01042744
17-03-17 22:45:34.088 -07 000000561 INF: Autofocus finished
17-03-17 22:45:34.288 -07 000000482 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:45:34.288 -07 000000501 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:45:34.288 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.68896484375, Z-position -0.174691459366858. ----------
17-03-17 22:45:34.288 -07 000000610 INF: Cycle	67	Tile	14	Exposure Settings		A	459	G	221	T	221	C	459
17-03-17 22:45:34.298 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36675, sync = True, waitForSettling = True)
17-03-17 22:45:34.298 -07 000000610 INF: Z Motor: Moving to -0.167887 mm, started at -0.174691 mm, distance = 6.80 um
17-03-17 22:45:34.298 -07 000000610 INF: FPGA: Xmit ZDACW 36675\n [Z Motor]
17-03-17 22:45:34.298 -07 000000433 INF: FPGA: Recv ZDACW
17-03-17 22:45:34.308 -07 000000610 INF: FPGA: 'ZDACW 36675' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:45:34.308 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:45:34.308 -07 000000486 INF: FPGA: Recv ZDACR 36675
17-03-17 22:45:34.318 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:34.318 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:45:34.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:34.468 -07 000000458 INF: FPGA: Recv ZSGSRD 35431
17-03-17 22:45:34.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:45:34.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:34.478 -07 000000576 INF: FPGA: Recv ZSGSRD 35432
17-03-17 22:45:34.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:34.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:34.488 -07 000000433 INF: FPGA: Recv ZSGSRD 35424
17-03-17 22:45:34.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:34.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:34.498 -07 000000561 INF: FPGA: Recv ZSGSRD 35422
17-03-17 22:45:34.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:34.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:34.508 -07 000000458 INF: FPGA: Recv ZSGSRD 35420
17-03-17 22:45:34.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:34.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:34.518 -07 000000478 INF: FPGA: Recv ZSGSRD 35430
17-03-17 22:45:34.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:34.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:34.528 -07 000000433 INF: FPGA: Recv ZSGSRD 35427
17-03-17 22:45:34.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:34.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:34.538 -07 000000486 INF: FPGA: Recv ZSGSRD 35416
17-03-17 22:45:34.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:34.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:34.548 -07 000000561 INF: FPGA: Recv ZSGSRD 35426
17-03-17 22:45:34.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:34.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:34.558 -07 000000478 INF: FPGA: Recv ZSGSRD 35427
17-03-17 22:45:34.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:34.568 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:45:34.568 -07 000000433 INF: FPGA: Recv ZPIEZORD 31329
17-03-17 22:45:34.578 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:34.578 -07 000000610 INF: Z Motor: Piezo is near 46.9 V (nominally 0 to 100 V), expect near 56.0 V, since DAC is at 5.596 V. Piezo Error = -9.0 V.
17-03-17 22:45:34.578 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.9 um, Read 10 ADC samples: Avg = 35426 (-167.0 uncal um), Error = 0.8 uncal um, Median = 35426 (-167.0 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 35416 (-167.0 uncal um), Max = 35432 (-167.1 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-17 22:45:34.578 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35426, posNoise = 6, negNoise = 10
17-03-17 22:45:34.578 -07 000000610 INF: Z Motor: After move to -0.167887, error = -0.000020, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:45:34.578 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 22:45:34.578 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:45:34.578 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:45:34.578 -07 000000486 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:45:34.578 -07 000000478 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:45:34.578 -07 000000458 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:45:34.578 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:45:34.578 -07 000000433 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:45:34.578 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:45:34.578 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 22:45:34.578 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:45:34.578 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 22:45:34.578 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:45:34.588 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 22:45:34.588 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:45:34.588 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:45:34.588 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:45:34.598 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 22:45:34.598 -07 000000458 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 22:45:34.598 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 22:45:34.598 -07 000000433 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 22:45:34.598 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 459 459 221 221 36852 150\n [Camera]
17-03-17 22:45:34.798 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:45:35.258 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 651
17-03-17 22:45:35.258 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 651
17-03-17 22:45:35.258 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:45:35.258 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 651
17-03-17 22:45:35.258 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 651
17-03-17 22:45:35.258 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:45:35.258 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:45:35.258 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1136783688, 0x0, 391868352) start.
17-03-17 22:45:35.268 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:45:35.268 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 22:45:35.448 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36852 844
17-03-17 22:45:35.598 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning grn on 994
17-03-17 22:45:35.658 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1136783688, 0x0, 391868352) end. Duration was 396 ms.
17-03-17 22:45:35.658 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 22:45:35.658 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:45:35.658 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 395 ms.
17-03-17 22:45:35.658 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 22:45:35.658 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:45:35.658 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:45:35.658 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-17 22:45:35.668 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:45:35.668 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-17 22:45:35.818 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1215
17-03-17 22:45:35.818 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1215
17-03-17 22:45:35.818 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:45:35.818 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1215
17-03-17 22:45:35.818 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1215
17-03-17 22:45:35.828 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:45:35.828 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:45:35.828 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 22:45:35.828 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:45:35.828 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-17 22:45:36.008 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP 1407
17-03-17 22:45:36.008 -07 000000618 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:45:36.008 -07 000000610 INF: FPGA: 'CAMDBLSNAP 459 459 221 221 36852 150' command took 2 ms to send, 1407 ms to get response, and 1415 ms overall
17-03-17 22:45:36.018 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 22:45:36.018 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.68896484375, Z-Position -0.167907491345159. ------
17-03-17 22:45:36.018 -07 000000482 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:45:36.018 -07 000000561 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.17411 mm
17-03-17 22:45:36.018 -07 000000561 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:45:36.018 -07 000000478 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-17 22:45:36.018 -07 000000478 INF: Y Motor: Moving to 71.5326 mm, started at 70.6890 mm, delta = 0.8436 mm
17-03-17 22:45:36.018 -07 000000433 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:45:36.018 -07 000000618 INF: Z Motor: Entering MoveAbsStepped (DAC = 38034, sync = True, waitForSettling = False)
17-03-17 22:45:36.018 -07 000000618 INF: Z Motor: Moving to -0.174108 mm, started at -0.167907 mm, distance = -6.20 um
17-03-17 22:45:36.028 -07 000000482 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:45:36.028 -07 000000618 INF: FPGA: Xmit ZDACW 38034\n [Z Motor]
17-03-17 22:45:36.028 -07 000000551 INF: FPGA: Recv ZDACW
17-03-17 22:45:36.038 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:45:36.038 -07 000000618 INF: FPGA: 'ZDACW 38034' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 22:45:36.038 -07 000000512 INF: FPGA: Recv YRDPOS 144771
17-03-17 22:45:36.048 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-17 22:45:36.048 -07 000000478 INF: Y Motor: Encoder = 144771 = motor step 113102.3 = 70.6890 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:45:36.048 -07 000000478 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:45:36.048 -07 000000478 INF: Y Motor: Moving 1350 steps-29
17-03-17 22:45:36.048 -07 000000482 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:45:36.058 -07 000000618 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:45:36.058 -07 000000576 INF: FPGA: Recv ZDACR 38034
17-03-17 22:45:36.068 -07 000000618 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:45:36.068 -07 000000618 INF: Z Motor: MoveAbsStepped took 43 ms (did NOT wait for settling yet))
17-03-17 22:45:36.068 -07 000000478 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:45:36.218 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 391 ms.
17-03-17 22:45:36.218 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 22:45:36.218 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:45:36.228 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 396 ms.
17-03-17 22:45:36.228 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 22:45:36.228 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:45:36.228 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:45:36.228 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:45:36.228 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-17 22:45:36.228 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-17 22:45:36.248 -07 000000486 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:45:36.248 -07 000000482 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 193 ms to get response, and 221 ms overall
17-03-17 22:45:36.438 -07 000000486 INF: FPGA: Recv YMVTILE
17-03-17 22:45:36.438 -07 000000478 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 398 ms overall
17-03-17 22:45:36.478 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:45:36.488 -07 000000501 INF: FPGA: Recv YRDPOS 146471
17-03-17 22:45:36.488 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 22:45:36.488 -07 000000478 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:45:36.488 -07 000000478 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 22:45:36.488 -07 000000478 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.844 mm, average velocity = 2.120 mm/sec
17-03-17 22:45:36.638 -07 000000482 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 67, FrontChillerTemperature: 4.001704,
17-03-17 22:45:36.998 -07 000000486 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:45:36.998 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 66. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1047, R2=1076, Total=2123. Warn if over 250 bubbles per interval.
17-03-17 22:45:37.438 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:45:37.438 -07 000000486 INF: FPGA: Recv YRDPOS 146471
17-03-17 22:45:37.448 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:37.448 -07 000000478 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:45:37.468 -07 000000478 INF: Y Motor: After move to 71.532608, error = -0.013565, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:45:37.468 -07 000000478 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:45:37.468 -07 000000478 INF: Y Motor: Moved to 71.5190 after 1448 ms (table move)
17-03-17 22:45:37.468 -07 000000561 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174108 mm (DAC = 38034)
17-03-17 22:45:37.468 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:37.478 -07 000000486 INF: FPGA: Recv ZSGSRD 36384
17-03-17 22:45:37.478 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 4 ms to get response, and 5 ms overall
17-03-17 22:45:37.478 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:37.478 -07 000000486 INF: FPGA: Recv ZSGSRD 36394
17-03-17 22:45:37.488 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 22:45:37.488 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:37.488 -07 000000482 INF: FPGA: Recv ZSGSRD 36389
17-03-17 22:45:37.498 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:37.498 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:37.498 -07 000000486 INF: FPGA: Recv ZSGSRD 36394
17-03-17 22:45:37.508 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:37.508 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:37.508 -07 000000486 INF: FPGA: Recv ZSGSRD 36396
17-03-17 22:45:37.518 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:37.518 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:37.518 -07 000000482 INF: FPGA: Recv ZSGSRD 36399
17-03-17 22:45:37.528 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:37.528 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:37.528 -07 000000478 INF: FPGA: Recv ZSGSRD 36387
17-03-17 22:45:37.538 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:37.538 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:37.538 -07 000000478 INF: FPGA: Recv ZSGSRD 36389
17-03-17 22:45:37.548 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:37.548 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:37.548 -07 000000486 INF: FPGA: Recv ZSGSRD 36390
17-03-17 22:45:37.558 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:37.558 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:37.558 -07 000000478 INF: FPGA: Recv ZSGSRD 36391
17-03-17 22:45:37.568 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:37.568 -07 000000561 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:45:37.568 -07 000000482 INF: FPGA: Recv ZPIEZORD 32624
17-03-17 22:45:37.578 -07 000000561 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:37.578 -07 000000561 INF: Z Motor: Piezo is near 49.7 V (nominally 0 to 100 V), expect near 58.0 V, since DAC is at 5.804 V. Piezo Error = -8.3 V.
17-03-17 22:45:37.578 -07 000000561 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.1 um, Read 10 ADC samples: Avg = 36391 (-173.2 uncal um), Error = 0.9 uncal um, Median = 36390 (-173.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 36384 (-173.2 uncal um), Max = 36399 (-173.3 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 22:45:37.578 -07 000000561 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36391, posNoise = 8, negNoise = 7
17-03-17 22:45:37.578 -07 000000561 INF: Z Motor: After move to -0.174108, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:45:37.578 -07 000000561 INF: Z Motor: Settle wait time = 1451 ms, measure time = 102 ms (allowed 150 ms), total time = 1553 ms
17-03-17 22:45:37.578 -07 000000561 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 22:45:37.628 -07 000000561 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1606 ms
17-03-17 22:45:37.628 -07 000000561 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:45:37.628 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:45:37.628 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:45:37.628 -07 000000486 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:45:37.628 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:45:37.638 -07 000000478 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:45:37.638 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:45:37.638 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 22:45:37.638 -07 000000478 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:45:37.638 -07 000000478 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:45:37.638 -07 000000478 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:45:37.648 -07 000000478 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 22:45:37.648 -07 000000478 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 22:45:37.648 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:45:37.688 -07 000000429 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:45:37.888 -07 000000429 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:45:37.888 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:45:37.888 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:45:37.898 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1113297000, 0x0, 559484976) start.
17-03-17 22:45:37.928 -07 000000459 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:45:37.928 -07 000000547 INF: FPGA: Recv CAMSNAP
17-03-17 22:45:37.928 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 285 ms overall
17-03-17 22:45:38.008 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1113297000, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 22:45:38.008 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:45:38.008 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:45:38.008 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 22:45:38.028 -07 000000501 INF: Autofocus start
17-03-17 22:45:38.028 -07 000000501 INF: MeasureProfile start
17-03-17 22:45:38.028 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:45:38.028 -07 000000478 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:45:38.038 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 22:45:38.038 -07 000000561 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:45:38.038 -07 000000501 INF: MeasureProfile done
17-03-17 22:45:38.038 -07 000000501 INF: X=16  Z correction [um]=0.01042744
17-03-17 22:45:38.038 -07 000000501 INF: Autofocus finished
17-03-17 22:45:38.238 -07 000000429 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:45:38.238 -07 000000561 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:45:38.238 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.51904296875, Z-position -0.174106856061958. ----------
17-03-17 22:45:38.238 -07 000000610 INF: Cycle	67	Tile	15	Exposure Settings		A	459	G	221	T	221	C	459
17-03-17 22:45:38.248 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36549, sync = True, waitForSettling = True)
17-03-17 22:45:38.248 -07 000000610 INF: Z Motor: Moving to -0.167311 mm, started at -0.174107 mm, distance = 6.80 um
17-03-17 22:45:38.248 -07 000000610 INF: FPGA: Xmit ZDACW 36549\n [Z Motor]
17-03-17 22:45:38.248 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 22:45:38.258 -07 000000610 INF: FPGA: 'ZDACW 36549' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:45:38.258 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:45:38.258 -07 000000482 INF: FPGA: Recv ZDACR 36549
17-03-17 22:45:38.268 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:38.268 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:45:38.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:38.418 -07 000000547 INF: FPGA: Recv ZSGSRD 35334
17-03-17 22:45:38.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:45:38.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:38.428 -07 000000482 INF: FPGA: Recv ZSGSRD 35340
17-03-17 22:45:38.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:38.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:38.438 -07 000000429 INF: FPGA: Recv ZSGSRD 35335
17-03-17 22:45:38.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:38.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:38.448 -07 000000475 INF: FPGA: Recv ZSGSRD 35329
17-03-17 22:45:38.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:38.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:38.458 -07 000000547 INF: FPGA: Recv ZSGSRD 35333
17-03-17 22:45:38.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:38.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:38.468 -07 000000501 INF: FPGA: Recv ZSGSRD 35333
17-03-17 22:45:38.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:38.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:38.478 -07 000000547 INF: FPGA: Recv ZSGSRD 35337
17-03-17 22:45:38.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:38.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:38.488 -07 000000501 INF: FPGA: Recv ZSGSRD 35336
17-03-17 22:45:38.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:38.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:38.498 -07 000000459 INF: FPGA: Recv ZSGSRD 35332
17-03-17 22:45:38.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:38.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:38.508 -07 000000501 INF: FPGA: Recv ZSGSRD 35338
17-03-17 22:45:38.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:38.518 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:45:38.518 -07 000000482 INF: FPGA: Recv ZPIEZORD 31219
17-03-17 22:45:38.528 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:38.528 -07 000000610 INF: Z Motor: Piezo is near 46.7 V (nominally 0 to 100 V), expect near 55.8 V, since DAC is at 5.577 V. Piezo Error = -9.1 V.
17-03-17 22:45:38.528 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.3 um, Read 10 ADC samples: Avg = 35335 (-166.5 uncal um), Error = 0.9 uncal um, Median = 35334 (-166.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35329 (-166.4 uncal um), Max = 35340 (-166.5 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 22:45:38.528 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35335, posNoise = 5, negNoise = 6
17-03-17 22:45:38.528 -07 000000610 INF: Z Motor: After move to -0.167311, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:45:38.528 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 22:45:38.528 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:45:38.528 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:45:38.528 -07 000000429 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:45:38.528 -07 000000478 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:45:38.528 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:45:38.528 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:45:38.528 -07 000000475 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:45:38.528 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:45:38.528 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:45:38.528 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:45:38.528 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:45:38.528 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:45:38.538 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 22:45:38.538 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:45:38.538 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:45:38.538 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:45:38.548 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 22:45:38.548 -07 000000478 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 22:45:38.548 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 22:45:38.548 -07 000000475 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 22:45:38.548 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 459 459 221 221 36726 150\n [Camera]
17-03-17 22:45:38.748 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:45:39.208 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 651
17-03-17 22:45:39.208 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 651
17-03-17 22:45:39.208 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:45:39.208 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 651
17-03-17 22:45:39.208 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 651
17-03-17 22:45:39.208 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:45:39.208 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:45:39.208 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1136783688, 0x0, 391868352) start.
17-03-17 22:45:39.218 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:45:39.218 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 22:45:39.398 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36726 844
17-03-17 22:45:39.548 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP turning grn on 994
17-03-17 22:45:39.588 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 371 ms.
17-03-17 22:45:39.588 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-17 22:45:39.588 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:45:39.588 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1136783688, 0x0, 391868352) end. Duration was 375 ms.
17-03-17 22:45:39.588 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 375 ms.
17-03-17 22:45:39.588 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:45:39.588 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:45:39.588 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:45:39.588 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 22:45:39.598 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 22:45:39.768 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1215
17-03-17 22:45:39.768 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1215
17-03-17 22:45:39.768 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:45:39.768 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1215
17-03-17 22:45:39.768 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1215
17-03-17 22:45:39.778 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:45:39.778 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:45:39.778 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 22:45:39.778 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:45:39.778 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-17 22:45:39.958 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP 1408
17-03-17 22:45:39.958 -07 000000561 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:45:39.958 -07 000000610 INF: FPGA: 'CAMDBLSNAP 459 459 221 221 36726 150' command took 2 ms to send, 1408 ms to get response, and 1415 ms overall
17-03-17 22:45:39.968 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 22:45:39.968 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.51904296875, Z-Position -0.167322888040258. ------
17-03-17 22:45:39.968 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:45:39.968 -07 000000433 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.17368 mm
17-03-17 22:45:39.968 -07 000000433 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:45:39.968 -07 000000486 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-17 22:45:39.968 -07 000000459 INF: Z Motor: Entering MoveAbsStepped (DAC = 37939, sync = True, waitForSettling = False)
17-03-17 22:45:39.968 -07 000000459 INF: Z Motor: Moving to -0.173674 mm, started at -0.167323 mm, distance = -6.35 um
17-03-17 22:45:39.968 -07 000000547 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:45:39.968 -07 000000486 INF: Y Motor: Moving to 72.3626 mm, started at 71.5190 mm, delta = 0.8436 mm
17-03-17 22:45:39.978 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:45:39.978 -07 000000459 INF: FPGA: Xmit ZDACW 37939\n [Z Motor]
17-03-17 22:45:39.978 -07 000000561 INF: FPGA: Recv ZDACW
17-03-17 22:45:39.988 -07 000000459 INF: FPGA: 'ZDACW 37939' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 22:45:39.988 -07 000000501 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:45:39.998 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:45:39.998 -07 000000627 INF: FPGA: Recv YRDPOS 146472
17-03-17 22:45:40.008 -07 000000459 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:45:40.008 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 31 ms overall
17-03-17 22:45:40.008 -07 000000486 INF: Y Motor: Encoder = 146472 = motor step 114431.3 = 71.5195 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:45:40.008 -07 000000429 INF: FPGA: Recv ZDACR 37939
17-03-17 22:45:40.008 -07 000000486 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:45:40.008 -07 000000486 INF: Y Motor: Moving 1349 steps-28
17-03-17 22:45:40.018 -07 000000459 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:45:40.018 -07 000000459 INF: Z Motor: MoveAbsStepped took 42 ms (did NOT wait for settling yet))
17-03-17 22:45:40.018 -07 000000486 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:45:40.178 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 399 ms.
17-03-17 22:45:40.178 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 397 ms.
17-03-17 22:45:40.178 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 22:45:40.178 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:45:40.178 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 22:45:40.178 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:45:40.188 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:45:40.188 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:45:40.188 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-17 22:45:40.188 -07 000000627 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:45:40.188 -07 000000501 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 211 ms overall
17-03-17 22:45:40.188 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-17 22:45:40.388 -07 000000547 INF: FPGA: Recv YMVTILE
17-03-17 22:45:40.388 -07 000000486 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 383 ms overall
17-03-17 22:45:40.428 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:45:40.438 -07 000000459 INF: FPGA: Recv YRDPOS 148172
17-03-17 22:45:40.438 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 22:45:40.438 -07 000000486 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:45:40.438 -07 000000486 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-17 22:45:40.438 -07 000000486 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 383 ms, distance = 0.844 mm, average velocity = 2.203 mm/sec
17-03-17 22:45:41.388 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:45:41.388 -07 000000459 INF: FPGA: Recv YRDPOS 148172
17-03-17 22:45:41.398 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:45:41.398 -07 000000486 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:45:41.418 -07 000000486 INF: Y Motor: After move to 72.362610, error = -0.013000, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:45:41.418 -07 000000486 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:45:41.418 -07 000000486 INF: Y Motor: Moved to 72.3496 after 1447 ms (table move)
17-03-17 22:45:41.418 -07 000000433 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173674 mm (DAC = 37939)
17-03-17 22:45:41.418 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:41.428 -07 000000458 INF: FPGA: Recv ZSGSRD 36333
17-03-17 22:45:41.428 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-17 22:45:41.428 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:41.428 -07 000000475 INF: FPGA: Recv ZSGSRD 36329
17-03-17 22:45:41.438 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:45:41.438 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:41.438 -07 000000627 INF: FPGA: Recv ZSGSRD 36329
17-03-17 22:45:41.448 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:41.448 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:41.448 -07 000000429 INF: FPGA: Recv ZSGSRD 36326
17-03-17 22:45:41.458 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:41.458 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:41.458 -07 000000627 INF: FPGA: Recv ZSGSRD 36323
17-03-17 22:45:41.468 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:41.468 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:41.468 -07 000000429 INF: FPGA: Recv ZSGSRD 36320
17-03-17 22:45:41.478 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:41.478 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:41.478 -07 000000501 INF: FPGA: Recv ZSGSRD 36330
17-03-17 22:45:41.488 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:41.488 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:41.488 -07 000000627 INF: FPGA: Recv ZSGSRD 36325
17-03-17 22:45:41.498 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:41.498 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:41.498 -07 000000429 INF: FPGA: Recv ZSGSRD 36323
17-03-17 22:45:41.508 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:41.508 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:41.508 -07 000000627 INF: FPGA: Recv ZSGSRD 36323
17-03-17 22:45:41.518 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:41.518 -07 000000433 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:45:41.518 -07 000000429 INF: FPGA: Recv ZPIEZORD 32557
17-03-17 22:45:41.528 -07 000000433 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:41.528 -07 000000433 INF: Z Motor: Piezo is near 49.6 V (nominally 0 to 100 V), expect near 57.9 V, since DAC is at 5.789 V. Piezo Error = -8.3 V.
17-03-17 22:45:41.528 -07 000000433 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.7 um, Read 10 ADC samples: Avg = 36326 (-172.8 uncal um), Error = 0.9 uncal um, Median = 36326 (-172.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36320 (-172.8 uncal um), Max = 36333 (-172.9 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 22:45:41.528 -07 000000433 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36326, posNoise = 7, negNoise = 6
17-03-17 22:45:41.528 -07 000000433 INF: Z Motor: After move to -0.173674, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:45:41.528 -07 000000433 INF: Z Motor: Settle wait time = 1451 ms, measure time = 102 ms (allowed 150 ms), total time = 1553 ms
17-03-17 22:45:41.528 -07 000000433 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 22:45:41.578 -07 000000433 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1605 ms
17-03-17 22:45:41.578 -07 000000433 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:45:41.578 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:45:41.578 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:45:41.578 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:45:41.578 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:45:41.578 -07 000000459 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:45:41.578 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:45:41.578 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:45:41.578 -07 000000459 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:45:41.588 -07 000000459 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:45:41.588 -07 000000459 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:45:41.598 -07 000000459 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 22:45:41.598 -07 000000459 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-17 22:45:41.598 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:45:41.648 -07 000000429 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:45:41.848 -07 000000501 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:45:41.848 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:45:41.848 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:45:41.848 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1113297000, 0x0, 559484976) start.
17-03-17 22:45:41.888 -07 000000433 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:45:41.888 -07 000000459 INF: FPGA: Recv CAMSNAP
17-03-17 22:45:41.888 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 283 ms to get response, and 285 ms overall
17-03-17 22:45:41.978 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1113297000, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 22:45:41.978 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:45:41.978 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:45:41.978 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 22:45:41.988 -07 000000429 INF: Autofocus start
17-03-17 22:45:41.988 -07 000000429 INF: MeasureProfile start
17-03-17 22:45:41.998 -07 000000459 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:45:41.998 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 67, FrontChillerTemperature: 3.997626,
17-03-17 22:45:41.998 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:45:41.998 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:45:42.008 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 66. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1047, R2=1076, Total=2123. Warn if over 250 bubbles per interval.
17-03-17 22:45:42.008 -07 000000459 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 22:45:42.008 -07 000000429 INF: MeasureProfile done
17-03-17 22:45:42.008 -07 000000429 INF: X=48  Z correction [um]=0.1739867
17-03-17 22:45:42.008 -07 000000429 INF: Autofocus finished
17-03-17 22:45:42.028 -07 000000459 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:45:42.228 -07 000000433 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:45:42.228 -07 000000459 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 22:45:42.238 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.349609375, Z-position -0.173689282272743. ----------
17-03-17 22:45:42.238 -07 000000610 INF: Cycle	67	Tile	16	Exposure Settings		A	459	G	221	T	221	C	459
17-03-17 22:45:42.238 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36490, sync = True, waitForSettling = True)
17-03-17 22:45:42.238 -07 000000610 INF: Z Motor: Moving to -0.167041 mm, started at -0.173689 mm, distance = 6.65 um
17-03-17 22:45:42.238 -07 000000610 INF: FPGA: Xmit ZDACW 36490\n [Z Motor]
17-03-17 22:45:42.238 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 22:45:42.248 -07 000000610 INF: FPGA: 'ZDACW 36490' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:45:42.248 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:45:42.248 -07 000000501 INF: FPGA: Recv ZDACR 36490
17-03-17 22:45:42.258 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:42.258 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:45:42.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:42.408 -07 000000433 INF: FPGA: Recv ZSGSRD 35293
17-03-17 22:45:42.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:45:42.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:42.418 -07 000000429 INF: FPGA: Recv ZSGSRD 35293
17-03-17 22:45:42.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:42.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:42.428 -07 000000429 INF: FPGA: Recv ZSGSRD 35290
17-03-17 22:45:42.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:42.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:42.438 -07 000000501 INF: FPGA: Recv ZSGSRD 35293
17-03-17 22:45:42.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:42.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:42.448 -07 000000433 INF: FPGA: Recv ZSGSRD 35295
17-03-17 22:45:42.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:42.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:42.458 -07 000000429 INF: FPGA: Recv ZSGSRD 35287
17-03-17 22:45:42.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:42.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:42.468 -07 000000433 INF: FPGA: Recv ZSGSRD 35291
17-03-17 22:45:42.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:42.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:42.478 -07 000000433 INF: FPGA: Recv ZSGSRD 35294
17-03-17 22:45:42.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:42.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:42.488 -07 000000627 INF: FPGA: Recv ZSGSRD 35288
17-03-17 22:45:42.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:42.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:42.498 -07 000000429 INF: FPGA: Recv ZSGSRD 35294
17-03-17 22:45:42.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:42.508 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:45:42.508 -07 000000429 INF: FPGA: Recv ZPIEZORD 31160
17-03-17 22:45:42.518 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:42.518 -07 000000610 INF: Z Motor: Piezo is near 46.6 V (nominally 0 to 100 V), expect near 55.7 V, since DAC is at 5.568 V. Piezo Error = -9.1 V.
17-03-17 22:45:42.518 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.0 um, Read 10 ADC samples: Avg = 35292 (-166.2 uncal um), Error = 0.9 uncal um, Median = 35293 (-166.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35287 (-166.1 uncal um), Max = 35295 (-166.2 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 22:45:42.518 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35292, posNoise = 3, negNoise = 5
17-03-17 22:45:42.518 -07 000000610 INF: Z Motor: After move to -0.167041, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:45:42.518 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 22:45:42.518 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:45:42.518 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:45:42.518 -07 000000433 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:45:42.518 -07 000000459 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:45:42.518 -07 000000627 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:45:42.518 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:45:42.518 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 22:45:42.518 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:45:42.518 -07 000000551 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:45:42.518 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:45:42.528 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:45:42.528 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:45:42.528 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:45:42.528 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:45:42.528 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 22:45:42.528 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:45:42.538 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 22:45:42.538 -07 000000627 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 22:45:42.538 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 22:45:42.538 -07 000000551 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 22:45:42.538 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 459 459 221 221 36667 150\n [Camera]
17-03-17 22:45:42.738 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:45:43.198 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 651
17-03-17 22:45:43.198 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 651
17-03-17 22:45:43.198 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:45:43.198 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 651
17-03-17 22:45:43.198 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 651
17-03-17 22:45:43.208 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:45:43.208 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 1136783688, 0x0, 391868352) start.
17-03-17 22:45:43.208 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:45:43.208 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:45:43.208 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 22:45:43.388 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36667 844
17-03-17 22:45:43.538 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP turning grn on 994
17-03-17 22:45:43.578 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 371 ms.
17-03-17 22:45:43.578 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-17 22:45:43.578 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:45:43.578 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 1136783688, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 22:45:43.578 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 22:45:43.578 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:45:43.588 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 22:45:43.588 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 22:45:43.588 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 22:45:43.598 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 22:45:43.758 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1215
17-03-17 22:45:43.758 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1215
17-03-17 22:45:43.758 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:45:43.868 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1215
17-03-17 22:45:43.868 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1215
17-03-17 22:45:43.868 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:45:43.878 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:45:43.878 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 22:45:43.878 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:45:43.878 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-17 22:45:43.948 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP 1407
17-03-17 22:45:43.958 -07 000000459 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:45:43.958 -07 000000610 INF: FPGA: 'CAMDBLSNAP 459 459 221 221 36667 150' command took 2 ms to send, 1410 ms to get response, and 1414 ms overall
17-03-17 22:45:43.958 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 22:45:43.958 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.349609375, Z-Position -0.167046646918163. ------
17-03-17 22:45:43.958 -07 000000429 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:45:43.958 -07 000000576 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.17349 mm
17-03-17 22:45:43.958 -07 000000576 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:45:43.958 -07 000000433 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:45:43.958 -07 000000478 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-17 22:45:43.958 -07 000000459 INF: Z Motor: Entering MoveAbsStepped (DAC = 37899, sync = True, waitForSettling = False)
17-03-17 22:45:43.958 -07 000000459 INF: Z Motor: Moving to -0.173491 mm, started at -0.167047 mm, distance = -6.44 um
17-03-17 22:45:43.958 -07 000000478 INF: Y Motor: Moving to 73.1926 mm, started at 72.3496 mm, delta = 0.8430 mm
17-03-17 22:45:43.968 -07 000000429 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 22:45:43.968 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:45:43.968 -07 000000433 INF: FPGA: Recv YRDPOS 148173
17-03-17 22:45:43.978 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:45:43.978 -07 000000478 INF: Y Motor: Encoder = 148173 = motor step 115760.2 = 72.3501 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:45:43.978 -07 000000459 INF: FPGA: Xmit ZDACW 37899\n [Z Motor]
17-03-17 22:45:43.978 -07 000000551 INF: FPGA: Recv ZDACW
17-03-17 22:45:43.978 -07 000000478 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:45:43.978 -07 000000478 INF: Y Motor: Moving 1348 steps-27
17-03-17 22:45:43.988 -07 000000459 INF: FPGA: 'ZDACW 37899' command took 0 ms to send, 0 ms to get response, and 20 ms overall
17-03-17 22:45:43.988 -07 000000429 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:45:43.998 -07 000000478 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:45:44.008 -07 000000459 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:45:44.008 -07 000000627 INF: FPGA: Recv ZDACR 37899
17-03-17 22:45:44.018 -07 000000459 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:45:44.018 -07 000000459 INF: Z Motor: MoveAbsStepped took 50 ms (did NOT wait for settling yet))
17-03-17 22:45:44.188 -07 000000433 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:45:44.188 -07 000000429 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-17 22:45:44.258 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 382 ms.
17-03-17 22:45:44.258 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-17 22:45:44.258 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:45:44.268 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 385 ms.
17-03-17 22:45:44.268 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 22:45:44.268 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:45:44.268 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:45:44.268 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:45:44.268 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 506 ms.
17-03-17 22:45:44.278 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 22:45:44.368 -07 000000486 INF: FPGA: Recv YMVTILE
17-03-17 22:45:44.368 -07 000000478 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 390 ms overall
17-03-17 22:45:44.408 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:45:44.418 -07 000000551 INF: FPGA: Recv YRDPOS 149864
17-03-17 22:45:44.418 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:45:44.418 -07 000000478 INF: Y Motor: Encoder = 149864 = motor step 117081.3 = 73.1758 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:45:44.418 -07 000000478 INF: Y Motor: Position error before settling (table move) = -34 encoder counts (-0.017 mm)
17-03-17 22:45:44.418 -07 000000478 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 391 ms, distance = 0.843 mm, average velocity = 2.156 mm/sec
17-03-17 22:45:45.368 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:45:45.368 -07 000000512 INF: FPGA: Recv YRDPOS 149865
17-03-17 22:45:45.378 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:45:45.378 -07 000000478 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:45:45.398 -07 000000478 INF: Y Motor: After move to 73.192604, error = -0.016335, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:45:45.398 -07 000000478 INF: Y Motor: Position error after settling (table move) = -33 encoder counts (-0.016 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 22:45:45.398 -07 000000478 INF: Y Motor: Moved to 73.1763 after 1436 ms (table move)
17-03-17 22:45:45.398 -07 000000576 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173491 mm (DAC = 37899)
17-03-17 22:45:45.398 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:45.408 -07 000000486 INF: FPGA: Recv ZSGSRD 36300
17-03-17 22:45:45.408 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 3 ms to get response, and 5 ms overall
17-03-17 22:45:45.408 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:45.408 -07 000000547 INF: FPGA: Recv ZSGSRD 36300
17-03-17 22:45:45.418 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:45:45.418 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:45.418 -07 000000547 INF: FPGA: Recv ZSGSRD 36293
17-03-17 22:45:45.428 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:45.428 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:45.428 -07 000000547 INF: FPGA: Recv ZSGSRD 36291
17-03-17 22:45:45.438 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:45.438 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:45.438 -07 000000547 INF: FPGA: Recv ZSGSRD 36303
17-03-17 22:45:45.448 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:45.448 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:45.448 -07 000000547 INF: FPGA: Recv ZSGSRD 36302
17-03-17 22:45:45.458 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:45.458 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:45.458 -07 000000551 INF: FPGA: Recv ZSGSRD 36298
17-03-17 22:45:45.468 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:45.468 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:45.468 -07 000000459 INF: FPGA: Recv ZSGSRD 36290
17-03-17 22:45:45.478 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:45.478 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:45.478 -07 000000459 INF: FPGA: Recv ZSGSRD 36297
17-03-17 22:45:45.488 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:45.488 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:45.488 -07 000000512 INF: FPGA: Recv ZSGSRD 36296
17-03-17 22:45:45.498 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:45.498 -07 000000576 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:45:45.498 -07 000000501 INF: FPGA: Recv ZPIEZORD 32466
17-03-17 22:45:45.508 -07 000000576 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:45.508 -07 000000576 INF: Z Motor: Piezo is near 49.4 V (nominally 0 to 100 V), expect near 57.8 V, since DAC is at 5.783 V. Piezo Error = -8.5 V.
17-03-17 22:45:45.508 -07 000000576 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.5 um, Read 10 ADC samples: Avg = 36297 (-172.6 uncal um), Error = 0.9 uncal um, Median = 36298 (-172.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36290 (-172.6 uncal um), Max = 36303 (-172.7 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 22:45:45.508 -07 000000576 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36297, posNoise = 6, negNoise = 7
17-03-17 22:45:45.508 -07 000000576 INF: Z Motor: After move to -0.173491, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:45:45.508 -07 000000576 INF: Z Motor: Settle wait time = 1439 ms, measure time = 102 ms (allowed 150 ms), total time = 1541 ms
17-03-17 22:45:45.508 -07 000000576 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 22:45:45.558 -07 000000576 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1594 ms
17-03-17 22:45:45.558 -07 000000576 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:45:45.558 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:45:45.558 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:45:45.558 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:45:45.558 -07 000000486 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:45:45.558 -07 000000433 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:45:45.558 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:45:45.558 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 22:45:45.558 -07 000000433 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:45:45.568 -07 000000433 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:45:45.568 -07 000000433 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:45:45.578 -07 000000433 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 22:45:45.578 -07 000000433 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 22:45:45.578 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:45:45.618 -07 000000547 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:45:45.818 -07 000000547 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:45:45.818 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:45:45.828 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:45:45.828 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1113297000, 0x0, 559484976) start.
17-03-17 22:45:45.858 -07 000000501 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:45:45.858 -07 000000512 INF: FPGA: Recv CAMSNAP
17-03-17 22:45:45.858 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 284 ms overall
17-03-17 22:45:45.938 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1113297000, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 22:45:45.938 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:45:45.938 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:45:45.938 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 22:45:45.958 -07 000000512 INF: Autofocus start
17-03-17 22:45:45.958 -07 000000512 INF: MeasureProfile start
17-03-17 22:45:45.958 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:45:45.958 -07 000000486 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:45:45.968 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 22:45:45.968 -07 000000501 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:45:45.968 -07 000000512 INF: MeasureProfile done
17-03-17 22:45:45.968 -07 000000512 INF: X=16  Z correction [um]=0.01042744
17-03-17 22:45:45.968 -07 000000512 INF: Autofocus finished
17-03-17 22:45:46.168 -07 000000512 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:45:46.168 -07 000000501 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 205 ms overall
17-03-17 22:45:46.168 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.17626953125, Z-position -0.173502980120632. ----------
17-03-17 22:45:46.178 -07 000000610 INF: Cycle	67	Tile	17	Exposure Settings		A	459	G	221	T	221	C	459
17-03-17 22:45:46.178 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36414, sync = True, waitForSettling = True)
17-03-17 22:45:46.178 -07 000000610 INF: Z Motor: Moving to -0.166693 mm, started at -0.173503 mm, distance = 6.81 um
17-03-17 22:45:46.178 -07 000000610 INF: FPGA: Xmit ZDACW 36414\n [Z Motor]
17-03-17 22:45:46.178 -07 000000627 INF: FPGA: Recv ZDACW
17-03-17 22:45:46.188 -07 000000610 INF: FPGA: 'ZDACW 36414' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 22:45:46.188 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:45:46.188 -07 000000512 INF: FPGA: Recv ZDACR 36414
17-03-17 22:45:46.198 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:46.198 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:45:46.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:46.348 -07 000000627 INF: FPGA: Recv ZSGSRD 35237
17-03-17 22:45:46.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:46.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:46.358 -07 000000486 INF: FPGA: Recv ZSGSRD 35241
17-03-17 22:45:46.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:46.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:46.368 -07 000000501 INF: FPGA: Recv ZSGSRD 35237
17-03-17 22:45:46.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:46.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:46.378 -07 000000627 INF: FPGA: Recv ZSGSRD 35237
17-03-17 22:45:46.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:46.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:46.388 -07 000000512 INF: FPGA: Recv ZSGSRD 35237
17-03-17 22:45:46.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:46.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:46.398 -07 000000501 INF: FPGA: Recv ZSGSRD 35243
17-03-17 22:45:46.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:46.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:46.408 -07 000000627 INF: FPGA: Recv ZSGSRD 35236
17-03-17 22:45:46.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:46.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:46.418 -07 000000512 INF: FPGA: Recv ZSGSRD 35232
17-03-17 22:45:46.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:46.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:46.428 -07 000000512 INF: FPGA: Recv ZSGSRD 35236
17-03-17 22:45:46.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:46.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:46.438 -07 000000501 INF: FPGA: Recv ZSGSRD 35232
17-03-17 22:45:46.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:46.448 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:45:46.448 -07 000000512 INF: FPGA: Recv ZPIEZORD 31118
17-03-17 22:45:46.458 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:46.458 -07 000000610 INF: Z Motor: Piezo is near 46.5 V (nominally 0 to 100 V), expect near 55.6 V, since DAC is at 5.556 V. Piezo Error = -9.1 V.
17-03-17 22:45:46.458 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.7 um, Read 10 ADC samples: Avg = 35237 (-165.8 uncal um), Error = 0.9 uncal um, Median = 35237 (-165.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35232 (-165.8 uncal um), Max = 35243 (-165.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 22:45:46.458 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35237, posNoise = 6, negNoise = 5
17-03-17 22:45:46.458 -07 000000610 INF: Z Motor: After move to -0.166693, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:45:46.458 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-17 22:45:46.458 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:45:46.458 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:45:46.458 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:45:46.458 -07 000000486 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:45:46.458 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:45:46.458 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:45:46.458 -07 000000627 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:45:46.458 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:45:46.458 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:45:46.458 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:45:46.458 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:45:46.458 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:45:46.468 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 22:45:46.468 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:45:46.468 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:45:46.468 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:45:46.478 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 22:45:46.478 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 22:45:46.478 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 22:45:46.478 -07 000000627 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 22:45:46.478 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 459 459 221 221 36591 150\n [Camera]
17-03-17 22:45:46.678 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:45:46.998 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:45:47.008 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 66. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1047, R2=1076, Total=2123. Warn if over 250 bubbles per interval.
17-03-17 22:45:47.138 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 651
17-03-17 22:45:47.138 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 651
17-03-17 22:45:47.138 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:45:47.138 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 651
17-03-17 22:45:47.138 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 651
17-03-17 22:45:47.138 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:45:47.138 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:45:47.138 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1136783688, 0x0, 391868352) start.
17-03-17 22:45:47.148 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:45:47.148 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 22:45:47.328 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36591 844
17-03-17 22:45:47.488 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning grn on 997
17-03-17 22:45:47.488 -07 000000486 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 67, FrontChillerTemperature: 4.003063,
17-03-17 22:45:47.518 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1136783688, 0x0, 391868352) end. Duration was 373 ms.
17-03-17 22:45:47.518 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 374 ms.
17-03-17 22:45:47.518 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:45:47.518 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 371 ms.
17-03-17 22:45:47.518 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-17 22:45:47.518 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:45:47.518 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 22:45:47.518 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 22:45:47.518 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 22:45:47.528 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 22:45:47.698 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1215
17-03-17 22:45:47.698 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1215
17-03-17 22:45:47.698 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:45:47.698 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1215
17-03-17 22:45:47.698 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1215
17-03-17 22:45:47.708 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:45:47.708 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:45:47.708 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 22:45:47.708 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:45:47.708 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-17 22:45:47.888 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP 1407
17-03-17 22:45:47.888 -07 000000458 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:45:47.888 -07 000000610 INF: FPGA: 'CAMDBLSNAP 459 459 221 221 36591 150' command took 2 ms to send, 1408 ms to get response, and 1415 ms overall
17-03-17 22:45:47.898 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 22:45:47.898 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.17626953125, Z-Position -0.166693315250366. ------
17-03-17 22:45:47.898 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:45:47.898 -07 000000627 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.17316 mm
17-03-17 22:45:47.898 -07 000000627 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:45:47.898 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:45:47.898 -07 000000475 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-17 22:45:47.898 -07 000000475 INF: Y Motor: Moving to 74.0226 mm, started at 73.1763 mm, delta = 0.8463 mm
17-03-17 22:45:47.898 -07 000000576 INF: Z Motor: Entering MoveAbsStepped (DAC = 37828, sync = True, waitForSettling = False)
17-03-17 22:45:47.898 -07 000000576 INF: Z Motor: Moving to -0.173165 mm, started at -0.166693 mm, distance = -6.47 um
17-03-17 22:45:47.908 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 22:45:47.908 -07 000000576 INF: FPGA: Xmit ZDACW 37828\n [Z Motor]
17-03-17 22:45:47.908 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 22:45:47.918 -07 000000576 INF: FPGA: 'ZDACW 37828' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 22:45:47.918 -07 000000618 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:45:47.928 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:45:47.928 -07 000000512 INF: FPGA: Recv YRDPOS 149865
17-03-17 22:45:47.938 -07 000000576 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:45:47.938 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 31 ms overall
17-03-17 22:45:47.938 -07 000000475 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:45:47.938 -07 000000475 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:45:47.938 -07 000000475 INF: Y Motor: Moving 1354 steps-34
17-03-17 22:45:47.938 -07 000000482 INF: FPGA: Recv ZDACR 37828
17-03-17 22:45:47.948 -07 000000576 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:45:47.948 -07 000000576 INF: Z Motor: MoveAbsStepped took 41 ms (did NOT wait for settling yet))
17-03-17 22:45:47.948 -07 000000475 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:45:48.108 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 395 ms.
17-03-17 22:45:48.108 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 22:45:48.108 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:45:48.108 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 394 ms.
17-03-17 22:45:48.108 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 22:45:48.108 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:45:48.108 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:45:48.108 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-17 22:45:48.108 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:45:48.118 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-17 22:45:48.118 -07 000000512 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:45:48.118 -07 000000618 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 212 ms overall
17-03-17 22:45:48.318 -07 000000561 INF: FPGA: Recv YMVTILE
17-03-17 22:45:48.318 -07 000000475 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-17 22:45:48.358 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:45:48.358 -07 000000438 INF: FPGA: Recv YRDPOS 151569
17-03-17 22:45:48.368 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:48.368 -07 000000475 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:45:48.368 -07 000000475 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-17 22:45:48.368 -07 000000475 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.846 mm, average velocity = 2.181 mm/sec
17-03-17 22:45:49.318 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:45:49.318 -07 000000486 INF: FPGA: Recv YRDPOS 151569
17-03-17 22:45:49.328 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:45:49.328 -07 000000475 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:45:49.338 -07 000000475 INF: Y Motor: After move to 74.022606, error = -0.014305, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:45:49.338 -07 000000475 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:45:49.338 -07 000000475 INF: Y Motor: Moved to 74.0083 after 1440 ms (table move)
17-03-17 22:45:49.348 -07 000000627 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173165 mm (DAC = 37828)
17-03-17 22:45:49.348 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:49.348 -07 000000501 INF: FPGA: Recv ZSGSRD 36255
17-03-17 22:45:49.358 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:45:49.358 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:49.358 -07 000000576 INF: FPGA: Recv ZSGSRD 36254
17-03-17 22:45:49.368 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:49.368 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:49.368 -07 000000501 INF: FPGA: Recv ZSGSRD 36243
17-03-17 22:45:49.378 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:49.378 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:49.378 -07 000000576 INF: FPGA: Recv ZSGSRD 36244
17-03-17 22:45:49.388 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:49.388 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:49.388 -07 000000501 INF: FPGA: Recv ZSGSRD 36248
17-03-17 22:45:49.398 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:49.398 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:49.398 -07 000000458 INF: FPGA: Recv ZSGSRD 36250
17-03-17 22:45:49.408 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:49.408 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:49.408 -07 000000482 INF: FPGA: Recv ZSGSRD 36241
17-03-17 22:45:49.418 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:49.418 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:49.418 -07 000000458 INF: FPGA: Recv ZSGSRD 36239
17-03-17 22:45:49.428 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:49.428 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:49.428 -07 000000482 INF: FPGA: Recv ZSGSRD 36249
17-03-17 22:45:49.438 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:49.438 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:49.438 -07 000000576 INF: FPGA: Recv ZSGSRD 36249
17-03-17 22:45:49.448 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:49.448 -07 000000627 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:45:49.448 -07 000000482 INF: FPGA: Recv ZPIEZORD 32437
17-03-17 22:45:49.458 -07 000000627 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:49.458 -07 000000627 INF: Z Motor: Piezo is near 49.3 V (nominally 0 to 100 V), expect near 57.7 V, since DAC is at 5.772 V. Piezo Error = -8.4 V.
17-03-17 22:45:49.458 -07 000000627 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.2 um, Read 10 ADC samples: Avg = 36247 (-172.3 uncal um), Error = 0.9 uncal um, Median = 36248 (-172.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 36239 (-172.2 uncal um), Max = 36255 (-172.4 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 22:45:49.458 -07 000000627 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36247, posNoise = 8, negNoise = 8
17-03-17 22:45:49.458 -07 000000627 INF: Z Motor: After move to -0.173165, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:45:49.458 -07 000000627 INF: Z Motor: Settle wait time = 1444 ms, measure time = 107 ms (allowed 150 ms), total time = 1551 ms
17-03-17 22:45:49.458 -07 000000627 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 22:45:49.508 -07 000000627 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1605 ms
17-03-17 22:45:49.508 -07 000000627 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:45:49.508 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:45:49.508 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:45:49.508 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:45:49.508 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:45:49.508 -07 000000429 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:45:49.508 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:45:49.508 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 22:45:49.508 -07 000000429 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:45:49.518 -07 000000429 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:45:49.518 -07 000000429 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:45:49.528 -07 000000429 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 22:45:49.528 -07 000000429 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-17 22:45:49.528 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:45:49.568 -07 000000512 INF: FPGA: Recv @CAMSNAP turning led on 41
17-03-17 22:45:49.768 -07 000000459 INF: FPGA: Recv @CAMSNAP img rdy 241
17-03-17 22:45:49.768 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 241
17-03-17 22:45:49.778 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:45:49.778 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1113297000, 0x0, 559484976) start.
17-03-17 22:45:49.808 -07 000000501 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:45:49.808 -07 000000475 INF: FPGA: Recv CAMSNAP
17-03-17 22:45:49.808 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 285 ms overall
17-03-17 22:45:49.898 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1113297000, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 22:45:49.898 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:45:49.908 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:45:49.908 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-17 22:45:50.008 -07 000000627 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:45:50.008 -07 000000438 INF: Autofocus start
17-03-17 22:45:50.008 -07 000000438 INF: MeasureProfile start
17-03-17 22:45:50.008 -07 000000486 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:45:50.018 -07 000000627 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 22:45:50.018 -07 000000627 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:45:50.018 -07 000000438 INF: MeasureProfile done
17-03-17 22:45:50.018 -07 000000438 INF: X=-48  Z correction [um]=-0.3191189
17-03-17 22:45:50.018 -07 000000438 INF: Autofocus finished
17-03-17 22:45:50.218 -07 000000459 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:45:50.218 -07 000000627 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:45:50.218 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.00830078125, Z-position -0.173181769513544. ----------
17-03-17 22:45:50.218 -07 000000610 INF: Cycle	67	Tile	18	Exposure Settings		A	459	G	221	T	221	C	459
17-03-17 22:45:50.228 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36270, sync = True, waitForSettling = True)
17-03-17 22:45:50.228 -07 000000610 INF: Z Motor: Moving to -0.166033 mm, started at -0.173182 mm, distance = 7.15 um
17-03-17 22:45:50.228 -07 000000610 INF: FPGA: Xmit ZDACW 36270\n [Z Motor]
17-03-17 22:45:50.228 -07 000000438 INF: FPGA: Recv ZDACW
17-03-17 22:45:50.238 -07 000000610 INF: FPGA: 'ZDACW 36270' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:45:50.238 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:45:50.238 -07 000000627 INF: FPGA: Recv ZDACR 36270
17-03-17 22:45:50.248 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:50.248 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:45:50.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:50.398 -07 000000459 INF: FPGA: Recv ZSGSRD 35134
17-03-17 22:45:50.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:50.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:50.408 -07 000000459 INF: FPGA: Recv ZSGSRD 35137
17-03-17 22:45:50.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:50.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:50.418 -07 000000459 INF: FPGA: Recv ZSGSRD 35134
17-03-17 22:45:50.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:50.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:50.428 -07 000000438 INF: FPGA: Recv ZSGSRD 35131
17-03-17 22:45:50.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:50.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:50.438 -07 000000438 INF: FPGA: Recv ZSGSRD 35138
17-03-17 22:45:50.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:50.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:50.448 -07 000000438 INF: FPGA: Recv ZSGSRD 35135
17-03-17 22:45:50.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:50.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:50.458 -07 000000438 INF: FPGA: Recv ZSGSRD 35137
17-03-17 22:45:50.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:50.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:50.468 -07 000000438 INF: FPGA: Recv ZSGSRD 35139
17-03-17 22:45:50.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:50.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:50.478 -07 000000438 INF: FPGA: Recv ZSGSRD 35139
17-03-17 22:45:50.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:50.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:50.488 -07 000000627 INF: FPGA: Recv ZSGSRD 35138
17-03-17 22:45:50.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:50.498 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:45:50.498 -07 000000627 INF: FPGA: Recv ZPIEZORD 30958
17-03-17 22:45:50.508 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:50.508 -07 000000610 INF: Z Motor: Piezo is near 46.1 V (nominally 0 to 100 V), expect near 55.3 V, since DAC is at 5.534 V. Piezo Error = -9.2 V.
17-03-17 22:45:50.508 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.0 um, Read 10 ADC samples: Avg = 35136 (-165.2 uncal um), Error = 0.9 uncal um, Median = 35137 (-165.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35131 (-165.1 uncal um), Max = 35139 (-165.2 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 22:45:50.508 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35136, posNoise = 3, negNoise = 5
17-03-17 22:45:50.508 -07 000000610 INF: Z Motor: After move to -0.166033, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:45:50.508 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 22:45:50.508 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:45:50.508 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:45:50.508 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:45:50.508 -07 000000459 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:45:50.508 -07 000000627 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:45:50.508 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:45:50.508 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:45:50.508 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:45:50.508 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:45:50.508 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:45:50.508 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:45:50.508 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:45:50.518 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:45:50.518 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:45:50.518 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:45:50.518 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:45:50.528 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 22:45:50.528 -07 000000627 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 22:45:50.528 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 22:45:50.528 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 22:45:50.528 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 459 459 221 221 36447 150\n [Camera]
17-03-17 22:45:50.728 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:45:51.188 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 651
17-03-17 22:45:51.188 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 651
17-03-17 22:45:51.188 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:45:51.188 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 651
17-03-17 22:45:51.188 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 651
17-03-17 22:45:51.188 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:45:51.188 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:45:51.198 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-17 22:45:51.198 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:45:51.198 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 22:45:51.378 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36447 848
17-03-17 22:45:51.528 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP turning grn on 994
17-03-17 22:45:51.568 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 370 ms.
17-03-17 22:45:51.568 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 370 ms.
17-03-17 22:45:51.568 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:45:51.568 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 374 ms.
17-03-17 22:45:51.568 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 374 ms.
17-03-17 22:45:51.568 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:45:51.568 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 22:45:51.568 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 22:45:51.568 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 22:45:51.588 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 22:45:51.748 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1215
17-03-17 22:45:51.748 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1215
17-03-17 22:45:51.748 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:45:51.748 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:45:51.748 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 22:45:51.758 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1215
17-03-17 22:45:51.758 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1215
17-03-17 22:45:51.758 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:45:51.758 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:45:51.758 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) start.
17-03-17 22:45:51.938 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP 1408
17-03-17 22:45:51.938 -07 000000433 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:45:51.938 -07 000000610 INF: FPGA: 'CAMDBLSNAP 459 459 221 221 36447 150' command took 2 ms to send, 1409 ms to get response, and 1415 ms overall
17-03-17 22:45:51.948 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 22:45:51.948 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.00830078125, Z-Position -0.166044469824048. ------
17-03-17 22:45:51.948 -07 000000478 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:45:51.948 -07 000000433 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.17247 mm
17-03-17 22:45:51.948 -07 000000433 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:45:51.948 -07 000000627 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-17 22:45:51.958 -07 000000627 INF: Y Motor: Moving to 74.8526 mm, started at 74.0083 mm, delta = 0.8443 mm
17-03-17 22:45:51.958 -07 000000458 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:45:51.958 -07 000000478 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 22:45:51.958 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:45:51.958 -07 000000551 INF: Z Motor: Entering MoveAbsStepped (DAC = 37676, sync = True, waitForSettling = False)
17-03-17 22:45:51.958 -07 000000551 INF: Z Motor: Moving to -0.172470 mm, started at -0.166044 mm, distance = -6.43 um
17-03-17 22:45:51.958 -07 000000458 INF: FPGA: Recv YRDPOS 151569
17-03-17 22:45:51.968 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:51.968 -07 000000551 INF: FPGA: Xmit ZDACW 37676\n [Z Motor]
17-03-17 22:45:51.968 -07 000000627 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:45:51.968 -07 000000627 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:45:51.968 -07 000000627 INF: Y Motor: Moving 1351 steps-29
17-03-17 22:45:51.968 -07 000000475 INF: FPGA: Recv ZDACW
17-03-17 22:45:51.978 -07 000000551 INF: FPGA: 'ZDACW 37676' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-17 22:45:51.978 -07 000000478 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:45:51.988 -07 000000627 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:45:51.998 -07 000000551 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:45:51.998 -07 000000429 INF: FPGA: Recv ZDACR 37676
17-03-17 22:45:51.998 -07 000000429 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:45:52.008 -07 000000551 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:45:52.008 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 66. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1047, R2=1076, Total=2123. Warn if over 250 bubbles per interval.
17-03-17 22:45:52.008 -07 000000551 INF: Z Motor: MoveAbsStepped took 48 ms (did NOT wait for settling yet))
17-03-17 22:45:52.138 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) end. Duration was 385 ms.
17-03-17 22:45:52.138 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 22:45:52.138 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:45:52.138 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 389 ms.
17-03-17 22:45:52.138 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 22:45:52.138 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:45:52.148 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:45:52.148 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:45:52.148 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 22:45:52.148 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 22:45:52.178 -07 000000429 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:45:52.178 -07 000000478 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-17 22:45:52.358 -07 000000482 INF: FPGA: Recv YMVTILE
17-03-17 22:45:52.358 -07 000000627 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 22:45:52.408 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:45:52.408 -07 000000547 INF: FPGA: Recv YRDPOS 153256
17-03-17 22:45:52.418 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-17 22:45:52.418 -07 000000627 INF: Y Motor: Encoder = 153256 = motor step 119731.3 = 74.8320 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:45:52.418 -07 000000627 INF: Y Motor: Position error before settling (table move) = -42 encoder counts (-0.021 mm)
17-03-17 22:45:52.418 -07 000000627 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.844 mm, average velocity = 2.127 mm/sec
17-03-17 22:45:52.848 -07 000000475 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 67, FrontChillerTemperature: 4.027603,
17-03-17 22:45:53.368 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:45:53.368 -07 000000482 INF: FPGA: Recv YRDPOS 153257
17-03-17 22:45:53.378 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:45:53.378 -07 000000627 INF: Y Motor: Encoder = 153257 = motor step 119732.0 = 74.8325 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:45:53.388 -07 000000627 INF: Y Motor: After move to 74.852608, error = -0.020088, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:45:53.388 -07 000000627 INF: Y Motor: Position error after settling (table move) = -41 encoder counts (-0.020 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 22:45:53.388 -07 000000627 INF: Y Motor: Moved to 74.8325 after 1437 ms (table move)
17-03-17 22:45:53.398 -07 000000433 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172470 mm (DAC = 37676)
17-03-17 22:45:53.398 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:53.398 -07 000000478 INF: FPGA: Recv ZSGSRD 36139
17-03-17 22:45:53.408 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:53.408 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:53.408 -07 000000627 INF: FPGA: Recv ZSGSRD 36126
17-03-17 22:45:53.418 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:53.418 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:53.418 -07 000000478 INF: FPGA: Recv ZSGSRD 36137
17-03-17 22:45:53.428 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:53.428 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:53.428 -07 000000627 INF: FPGA: Recv ZSGSRD 36139
17-03-17 22:45:53.438 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:53.438 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:53.438 -07 000000561 INF: FPGA: Recv ZSGSRD 36140
17-03-17 22:45:53.448 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:45:53.448 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:53.448 -07 000000627 INF: FPGA: Recv ZSGSRD 36148
17-03-17 22:45:53.458 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:53.458 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:53.458 -07 000000478 INF: FPGA: Recv ZSGSRD 36134
17-03-17 22:45:53.468 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:53.468 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:53.468 -07 000000627 INF: FPGA: Recv ZSGSRD 36138
17-03-17 22:45:53.478 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:53.478 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:53.478 -07 000000478 INF: FPGA: Recv ZSGSRD 36130
17-03-17 22:45:53.488 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:53.488 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:53.488 -07 000000627 INF: FPGA: Recv ZSGSRD 36132
17-03-17 22:45:53.498 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:53.498 -07 000000433 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:45:53.498 -07 000000547 INF: FPGA: Recv ZPIEZORD 32325
17-03-17 22:45:53.508 -07 000000433 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:53.508 -07 000000433 INF: Z Motor: Piezo is near 49.1 V (nominally 0 to 100 V), expect near 57.5 V, since DAC is at 5.749 V. Piezo Error = -8.4 V.
17-03-17 22:45:53.508 -07 000000433 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.5 um, Read 10 ADC samples: Avg = 36136 (-171.6 uncal um), Error = 0.9 uncal um, Median = 36138 (-171.6 uncal um), StdDev = 6 (0.0 uncal um), Range = 22 (0.1 uncal um), Min = 36126 (-171.5 uncal um), Max = 36148 (-171.7 uncal um), Pos Noise = 12 (0.1 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-17 22:45:53.508 -07 000000433 INF: Z Motor: ADC noise = 12, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36136, posNoise = 12, negNoise = 10
17-03-17 22:45:53.508 -07 000000433 INF: Z Motor: After move to -0.172470, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:45:53.508 -07 000000433 INF: Z Motor: Settle wait time = 1438 ms, measure time = 111 ms (allowed 150 ms), total time = 1549 ms
17-03-17 22:45:53.508 -07 000000433 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-17 22:45:53.548 -07 000000433 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1594 ms
17-03-17 22:45:53.548 -07 000000433 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:45:53.548 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:45:53.548 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:45:53.548 -07 000000433 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:45:53.548 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:45:53.558 -07 000000433 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:45:53.558 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:45:53.558 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:45:53.558 -07 000000433 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:45:53.558 -07 000000433 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:45:53.558 -07 000000433 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:45:53.568 -07 000000433 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 22:45:53.578 -07 000000433 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-17 22:45:53.578 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:45:53.628 -07 000000561 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:45:53.828 -07 000000433 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:45:53.828 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:45:53.828 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:45:53.828 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1172205952, 0x0, 559484976) start.
17-03-17 22:45:53.868 -07 000000433 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:45:53.868 -07 000000433 INF: FPGA: Recv CAMSNAP
17-03-17 22:45:53.868 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 287 ms overall
17-03-17 22:45:53.948 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1172205952, 0x0, 559484976) end. Duration was 119 ms.
17-03-17 22:45:53.948 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:45:53.948 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 22:45:53.948 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 122 ms.
17-03-17 22:45:53.968 -07 000000433 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:45:53.968 -07 000000561 INF: Autofocus start
17-03-17 22:45:53.968 -07 000000561 INF: MeasureProfile start
17-03-17 22:45:53.978 -07 000000561 INF: MeasureProfile done
17-03-17 22:45:53.978 -07 000000561 INF: X=32  Z correction [um]=0.09220707
17-03-17 22:45:53.978 -07 000000561 INF: Autofocus finished
17-03-17 22:45:53.978 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:45:53.978 -07 000000433 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 9 ms to get response, and 16 ms overall
17-03-17 22:45:53.988 -07 000000433 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:45:54.188 -07 000000561 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:45:54.188 -07 000000433 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:45:54.188 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83251953125, Z-position -0.172468681965809. ----------
17-03-17 22:45:54.188 -07 000000610 INF: Cycle	67	Tile	19	Exposure Settings		A	459	G	221	T	221	C	459
17-03-17 22:45:54.198 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36208, sync = True, waitForSettling = True)
17-03-17 22:45:54.198 -07 000000610 INF: Z Motor: Moving to -0.165750 mm, started at -0.172469 mm, distance = 6.72 um
17-03-17 22:45:54.198 -07 000000610 INF: FPGA: Xmit ZDACW 36208\n [Z Motor]
17-03-17 22:45:54.198 -07 000000433 INF: FPGA: Recv ZDACW
17-03-17 22:45:54.208 -07 000000610 INF: FPGA: 'ZDACW 36208' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:54.208 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:45:54.208 -07 000000433 INF: FPGA: Recv ZDACR 36208
17-03-17 22:45:54.218 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:54.218 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:45:54.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:54.368 -07 000000433 INF: FPGA: Recv ZSGSRD 35098
17-03-17 22:45:54.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:45:54.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:54.378 -07 000000561 INF: FPGA: Recv ZSGSRD 35090
17-03-17 22:45:54.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:54.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:54.388 -07 000000561 INF: FPGA: Recv ZSGSRD 35091
17-03-17 22:45:54.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:54.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:54.398 -07 000000433 INF: FPGA: Recv ZSGSRD 35093
17-03-17 22:45:54.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:54.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:54.408 -07 000000561 INF: FPGA: Recv ZSGSRD 35095
17-03-17 22:45:54.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:54.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:54.418 -07 000000561 INF: FPGA: Recv ZSGSRD 35092
17-03-17 22:45:54.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:54.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:54.428 -07 000000433 INF: FPGA: Recv ZSGSRD 35089
17-03-17 22:45:54.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:54.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:54.438 -07 000000561 INF: FPGA: Recv ZSGSRD 35096
17-03-17 22:45:54.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:54.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:54.448 -07 000000433 INF: FPGA: Recv ZSGSRD 35090
17-03-17 22:45:54.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:54.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:45:54.458 -07 000000433 INF: FPGA: Recv ZSGSRD 35089
17-03-17 22:45:54.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:54.468 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:45:54.468 -07 000000433 INF: FPGA: Recv ZPIEZORD 30943
17-03-17 22:45:54.478 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:45:54.478 -07 000000610 INF: Z Motor: Piezo is near 46.1 V (nominally 0 to 100 V), expect near 55.2 V, since DAC is at 5.525 V. Piezo Error = -9.1 V.
17-03-17 22:45:54.478 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -165.7 um, Read 10 ADC samples: Avg = 35092 (-164.9 uncal um), Error = 0.9 uncal um, Median = 35092 (-164.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35089 (-164.9 uncal um), Max = 35098 (-164.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 22:45:54.478 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35092, posNoise = 6, negNoise = 3
17-03-17 22:45:54.478 -07 000000610 INF: Z Motor: After move to -0.165750, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:45:54.478 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 22:45:54.478 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:45:54.478 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:45:54.478 -07 000000433 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:45:54.478 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:45:54.478 -07 000000433 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:45:54.478 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:45:54.478 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:45:54.478 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:45:54.478 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:45:54.478 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:45:54.478 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:45:54.478 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:45:54.488 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:45:54.488 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:45:54.488 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:45:54.488 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:45:54.498 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 22:45:54.498 -07 000000433 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 22:45:54.498 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 22:45:54.498 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 22:45:54.498 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 459 459 221 221 36385 150\n [Camera]
17-03-17 22:45:54.698 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:45:55.158 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 651
17-03-17 22:45:55.158 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 651
17-03-17 22:45:55.158 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:45:55.158 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:45:55.158 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2350877912, 0x0, 391868352) start.
17-03-17 22:45:55.158 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 651
17-03-17 22:45:55.158 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 651
17-03-17 22:45:55.158 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:45:55.158 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:45:55.158 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 22:45:55.348 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36385 844
17-03-17 22:45:55.498 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP turning grn on 994
17-03-17 22:45:55.538 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2350877912, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 22:45:55.538 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 22:45:55.538 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:45:55.538 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 22:45:55.538 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 22:45:55.538 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:45:55.538 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 22:45:55.538 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 22:45:55.538 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:45:55.548 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 22:45:55.718 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1215
17-03-17 22:45:55.718 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1215
17-03-17 22:45:55.718 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:45:55.718 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:45:55.718 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-17 22:45:55.728 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1215
17-03-17 22:45:55.728 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1215
17-03-17 22:45:55.728 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:45:55.728 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:45:55.728 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-17 22:45:55.908 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP 1408
17-03-17 22:45:55.908 -07 000000618 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:45:55.908 -07 000000610 INF: FPGA: 'CAMDBLSNAP 459 459 221 221 36385 150' command took 2 ms to send, 1409 ms to get response, and 1415 ms overall
17-03-17 22:45:56.118 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 398 ms.
17-03-17 22:45:56.118 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 22:45:56.118 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:45:56.118 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 395 ms.
17-03-17 22:45:56.118 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 22:45:56.118 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:45:56.128 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:45:56.128 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 22:45:56.128 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-17 22:45:56.128 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-17 22:45:56.138 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-17 22:45:56.168 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 42 ms.
17-03-17 22:45:56.168 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-17 22:45:56.218 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 42 ms.
17-03-17 22:45:56.218 -07 000000610 INF: Move compensator for Bottom-surface imaging.
17-03-17 22:45:56.218 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-17 22:45:56.218 -07 000000561 INF: FPGA: Recv EMCUR 
17-03-17 22:45:56.228 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:45:56.228 -07 000000610 INF: FPGA: Xmit EMIN 20 40\n [Compensator]
17-03-17 22:45:56.728 -07 000000512 INF: FPGA: Recv EMIN
17-03-17 22:45:56.728 -07 000000610 INF: FPGA: 'EMIN 20 40' command took 0 ms to send, 493 ms to get response, and 502 ms overall
17-03-17 22:45:56.728 -07 000000610 INF: FPGA: Xmit EMCUR 60\n [Compensator]
17-03-17 22:45:56.728 -07 000000618 INF: FPGA: Recv EMCUR 
17-03-17 22:45:56.738 -07 000000610 INF: FPGA: 'EMCUR 60' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:45:56.738 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 22:45:56.738 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 74.83251953125, Z-Position -0.16576180448981. ------
17-03-17 22:45:56.738 -07 000000433 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:45:56.738 -07 000000486 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.14032 mm
17-03-17 22:45:56.738 -07 000000486 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:45:56.748 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:45:56.748 -07 000000433 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 22:45:56.748 -07 000000433 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:45:56.748 -07 000000618 INF: Z Motor: Entering MoveAbsStepped (DAC = 30653, sync = True, waitForSettling = False)
17-03-17 22:45:56.748 -07 000000618 INF: Z Motor: Moving to -0.140320 mm, started at -0.165762 mm, distance = 25.44 um
17-03-17 22:45:56.748 -07 000000512 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-17 22:45:56.748 -07 000000512 INF: Y Motor: Moving to 59.9126 mm, started at 74.8325 mm, delta = -14.9199 mm
17-03-17 22:45:56.758 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:45:56.758 -07 000000561 INF: FPGA: Recv YRDPOS 153258
17-03-17 22:45:56.768 -07 000000618 INF: FPGA: Xmit ZDACW 30653\n [Z Motor]
17-03-17 22:45:56.768 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-17 22:45:56.768 -07 000000512 INF: Y Motor: Encoder = 153258 = motor step 119732.8 = 74.8330 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:45:56.768 -07 000000429 INF: FPGA: Recv ZDACW
17-03-17 22:45:56.768 -07 000000512 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = -14.9400 mm (-23904.0 steps). UsingTableMove = False
17-03-17 22:45:56.768 -07 000000512 INF: Y Motor: Moving to 122701 encoder counts
17-03-17 22:45:56.778 -07 000000618 INF: FPGA: 'ZDACW 30653' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-17 22:45:56.778 -07 000000512 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-17 22:45:56.788 -07 000000618 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:45:56.788 -07 000000429 INF: FPGA: Recv ZDACR 30653
17-03-17 22:45:56.798 -07 000000618 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:45:56.798 -07 000000618 INF: Z Motor: MoveAbsStepped took 48 ms (did NOT wait for settling yet))
17-03-17 22:45:56.948 -07 000000429 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:45:56.948 -07 000000433 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-17 22:45:56.998 -07 000000433 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:45:57.008 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 66. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1047, R2=1076, Total=2123. Warn if over 250 bubbles per interval.
17-03-17 22:45:58.208 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 67, FrontChillerTemperature: 4.014009,
17-03-17 22:45:59.228 -07 000000459 INF: FPGA: Recv YMVTO 122703 23904
17-03-17 22:45:59.228 -07 000000512 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 2447 ms to get response, and 2464 ms overall
17-03-17 22:45:59.228 -07 000000512 INF: Y Motor: Position error before settling = 2 encoder counts (0.001 mm)
17-03-17 22:45:59.228 -07 000000512 INF: Y Motor: To move from 74.833 to 59.913 (-14.920 mm) should take 23873 steps, but required 23904 steps (14.940 mm). Slippage = 0.019 mm (0.00%).
17-03-17 22:45:59.228 -07 000000512 INF: Y Motor: FPGA move command 'YMVTO 122701' took 2464 ms, distance = 14.920 mm, average velocity = 6.055 mm/sec
17-03-17 22:46:01.998 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:46:02.008 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 66. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1047, R2=1076, Total=2123. Warn if over 250 bubbles per interval.
17-03-17 22:46:02.078 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:46:02.078 -07 000000561 INF: FPGA: Recv YRDPOS 122698
17-03-17 22:46:02.088 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:46:02.088 -07 000000512 INF: Y Motor: Encoder = 122698 = motor step 95857.8 = 59.9111 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:46:02.118 -07 000000512 INF: Y Motor: After move to 59.912609, error = -0.001476, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:46:02.118 -07 000000512 INF: Y Motor: Position error after settling = -3 encoder counts (-0.001 mm), Delta during settling = -5 counts (-0.002 mm)
17-03-17 22:46:02.118 -07 000000512 INF: Y Motor: Moved to 59.9111 after 5371 ms
17-03-17 22:46:02.118 -07 000000486 INF: Z Motor: EndOfMoveAbsStepped: target = -0.140320 mm (DAC = 30653)
17-03-17 22:46:02.118 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:02.118 -07 000000438 INF: FPGA: Recv ZSGSRD 31135
17-03-17 22:46:02.128 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:46:02.128 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:02.128 -07 000000512 INF: FPGA: Recv ZSGSRD 31134
17-03-17 22:46:02.138 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:02.138 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:02.138 -07 000000501 INF: FPGA: Recv ZSGSRD 31130
17-03-17 22:46:02.148 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:02.148 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:02.148 -07 000000475 INF: FPGA: Recv ZSGSRD 31131
17-03-17 22:46:02.158 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:02.158 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:02.158 -07 000000561 INF: FPGA: Recv ZSGSRD 31134
17-03-17 22:46:02.168 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:02.168 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:02.168 -07 000000576 INF: FPGA: Recv ZSGSRD 31136
17-03-17 22:46:02.178 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:02.178 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:02.178 -07 000000561 INF: FPGA: Recv ZSGSRD 31130
17-03-17 22:46:02.188 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:02.188 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:02.188 -07 000000475 INF: FPGA: Recv ZSGSRD 31133
17-03-17 22:46:02.198 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:02.198 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:02.198 -07 000000438 INF: FPGA: Recv ZSGSRD 31136
17-03-17 22:46:02.208 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:02.208 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:02.208 -07 000000512 INF: FPGA: Recv ZSGSRD 31135
17-03-17 22:46:02.218 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:02.218 -07 000000486 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:46:02.218 -07 000000438 INF: FPGA: Recv ZPIEZORD 26797
17-03-17 22:46:02.228 -07 000000486 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:02.228 -07 000000486 INF: Z Motor: Piezo is near 37.2 V (nominally 0 to 100 V), expect near 46.8 V, since DAC is at 4.677 V. Piezo Error = -9.5 V.
17-03-17 22:46:02.228 -07 000000486 INF: Z Motor: ReadAdcAverage: Commanded Z = -140.3 um, Read 10 ADC samples: Avg = 31133 (-139.5 uncal um), Error = 0.8 uncal um, Median = 31134 (-139.5 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 31130 (-139.5 uncal um), Max = 31136 (-139.5 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 22:46:02.228 -07 000000486 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31133, posNoise = 3, negNoise = 3
17-03-17 22:46:02.228 -07 000000486 INF: Z Motor: After move to -0.140320, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:46:02.228 -07 000000486 INF: Z Motor: Settle wait time = 5374 ms, measure time = 104 ms (allowed 150 ms), total time = 5478 ms
17-03-17 22:46:02.228 -07 000000486 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 22:46:02.278 -07 000000486 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 5533 ms
17-03-17 22:46:02.278 -07 000000486 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:46:02.278 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:46:02.278 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:46:02.278 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:46:02.278 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:46:02.278 -07 000000429 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:46:02.278 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:46:02.288 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:46:02.288 -07 000000429 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-17 22:46:02.308 -07 000000429 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 20 ms.
17-03-17 22:46:02.308 -07 000000429 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:46:02.308 -07 000000429 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:46:02.308 -07 000000429 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:46:02.308 -07 000000429 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 22:46:02.308 -07 000000429 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 30 ms.
17-03-17 22:46:02.318 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:46:02.358 -07 000000486 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:46:02.558 -07 000000512 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:46:02.558 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:46:02.558 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:46:02.558 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1201016592, 0x0, 559484976) start.
17-03-17 22:46:02.598 -07 000000501 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:46:02.598 -07 000000486 INF: FPGA: Recv CAMSNAP
17-03-17 22:46:02.598 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 285 ms overall
17-03-17 22:46:02.678 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1201016592, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 22:46:02.678 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:46:02.678 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 22:46:02.678 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 22:46:02.698 -07 000000438 INF: Image SNR check: start
17-03-17 22:46:02.698 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:46:02.698 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:46:02.708 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 22:46:02.708 -07 000000576 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:46:02.708 -07 000000438 INF: Image SNR check: pass  [peak (Max-Min)=54.11]
17-03-17 22:46:02.718 -07 000000438 INF: Autofocus start
17-03-17 22:46:02.718 -07 000000438 INF: MeasureProfile start
17-03-17 22:46:02.728 -07 000000438 INF: MeasureProfile done
17-03-17 22:46:02.728 -07 000000438 INF: X=-16  Z correction [um]=-0.08128808
17-03-17 22:46:02.728 -07 000000438 INF: Autofocus finished
17-03-17 22:46:02.908 -07 000000486 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:46:02.908 -07 000000576 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:46:02.908 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.9111328125, Z-position -0.140328348620579. ----------
17-03-17 22:46:02.908 -07 000000610 INF: Cycle	67	Tile	1	Exposure Settings		A	459	G	221	T	221	C	459
17-03-17 22:46:02.918 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 29148, sync = True, waitForSettling = True)
17-03-17 22:46:02.918 -07 000000610 INF: Z Motor: Moving to -0.133431 mm, started at -0.140328 mm, distance = 6.90 um
17-03-17 22:46:02.918 -07 000000610 INF: FPGA: Xmit ZDACW 29148\n [Z Motor]
17-03-17 22:46:02.918 -07 000000576 INF: FPGA: Recv ZDACW
17-03-17 22:46:02.928 -07 000000610 INF: FPGA: 'ZDACW 29148' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:46:02.928 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:46:02.928 -07 000000475 INF: FPGA: Recv ZDACR 29148
17-03-17 22:46:02.938 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:02.938 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:46:03.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:03.088 -07 000000501 INF: FPGA: Recv ZSGSRD 30060
17-03-17 22:46:03.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:03.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:03.098 -07 000000475 INF: FPGA: Recv ZSGSRD 30059
17-03-17 22:46:03.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:03.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:03.108 -07 000000561 INF: FPGA: Recv ZSGSRD 30055
17-03-17 22:46:03.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:03.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:03.128 -07 000000576 INF: FPGA: Recv ZSGSRD 30064
17-03-17 22:46:03.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:46:03.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:03.148 -07 000000512 INF: FPGA: Recv ZSGSRD 30056
17-03-17 22:46:03.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:46:03.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:03.158 -07 000000576 INF: FPGA: Recv ZSGSRD 30059
17-03-17 22:46:03.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:03.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:03.178 -07 000000438 INF: FPGA: Recv ZSGSRD 30059
17-03-17 22:46:03.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:46:03.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:03.208 -07 000000475 INF: FPGA: Recv ZSGSRD 30057
17-03-17 22:46:03.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:46:03.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:03.218 -07 000000576 INF: FPGA: Recv ZSGSRD 30061
17-03-17 22:46:03.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:03.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:03.228 -07 000000561 INF: FPGA: Recv ZSGSRD 30071
17-03-17 22:46:03.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:03.238 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:46:03.238 -07 000000475 INF: FPGA: Recv ZPIEZORD 25657
17-03-17 22:46:03.248 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:03.248 -07 000000610 INF: Z Motor: Piezo is near 34.8 V (nominally 0 to 100 V), expect near 44.5 V, since DAC is at 4.448 V. Piezo Error = -9.7 V.
17-03-17 22:46:03.248 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.4 um, Read 10 ADC samples: Avg = 30060 (-132.6 uncal um), Error = 0.8 uncal um, Median = 30059 (-132.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 30055 (-132.6 uncal um), Max = 30071 (-132.7 uncal um), Pos Noise = 11 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 22:46:03.248 -07 000000610 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30060, posNoise = 11, negNoise = 5
17-03-17 22:46:03.248 -07 000000610 INF: Z Motor: After move to -0.133431, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:46:03.248 -07 000000610 INF: Z Motor: MoveAbsStepped took 329 ms)
17-03-17 22:46:03.248 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:46:03.248 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:46:03.248 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:46:03.248 -07 000000478 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:46:03.248 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:46:03.248 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:46:03.248 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:46:03.248 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:46:03.248 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 22:46:03.248 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:46:03.248 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 22:46:03.248 -07 000000576 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-17 22:46:03.258 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:46:03.258 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:46:03.268 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 22:46:03.268 -07 000000478 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 22:46:03.268 -07 000000576 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 20 ms.
17-03-17 22:46:03.268 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:46:03.278 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 22:46:03.278 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:46:03.278 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 22:46:03.278 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 32 ms.
17-03-17 22:46:03.288 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 459 459 221 221 29324 150\n [Camera]
17-03-17 22:46:03.488 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP turning red on 195
17-03-17 22:46:03.568 -07 000000561 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 67, FrontChillerTemperature: 3.974486,
17-03-17 22:46:03.948 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 651
17-03-17 22:46:03.948 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 651
17-03-17 22:46:03.948 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:46:03.948 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:46:03.948 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-17 22:46:03.948 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 651
17-03-17 22:46:03.948 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 651
17-03-17 22:46:03.948 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:46:03.948 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:46:03.948 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-17 22:46:04.138 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29324 844
17-03-17 22:46:04.288 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning grn on 995
17-03-17 22:46:04.338 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 388 ms.
17-03-17 22:46:04.338 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 22:46:04.338 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:46:04.338 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 394 ms.
17-03-17 22:46:04.338 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 22:46:04.338 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:46:04.338 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:46:04.338 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:46:04.338 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 22:46:04.348 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 22:46:04.508 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1215
17-03-17 22:46:04.508 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1215
17-03-17 22:46:04.508 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:46:04.508 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:46:04.508 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) start.
17-03-17 22:46:04.508 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1215
17-03-17 22:46:04.508 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1215
17-03-17 22:46:04.508 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:46:04.508 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:46:04.508 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-17 22:46:04.698 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP 1408
17-03-17 22:46:04.698 -07 000000438 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:46:04.698 -07 000000610 INF: FPGA: 'CAMDBLSNAP 459 459 221 221 29324 150' command took 2 ms to send, 1406 ms to get response, and 1415 ms overall
17-03-17 22:46:04.698 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 22:46:04.698 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.9111328125, Z-Position -0.133435168992469. ------
17-03-17 22:46:04.708 -07 000000438 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:46:04.708 -07 000000486 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.13962 mm
17-03-17 22:46:04.708 -07 000000486 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:46:04.708 -07 000000475 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-17 22:46:04.708 -07 000000475 INF: Y Motor: Moving to 60.7426 mm, started at 59.9111 mm, delta = 0.8315 mm
17-03-17 22:46:04.708 -07 000000576 INF: Z Motor: Entering MoveAbsStepped (DAC = 30500, sync = True, waitForSettling = False)
17-03-17 22:46:04.708 -07 000000576 INF: Z Motor: Moving to -0.139620 mm, started at -0.133435 mm, distance = -6.18 um
17-03-17 22:46:04.708 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:46:04.718 -07 000000438 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:46:04.718 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:46:04.718 -07 000000561 INF: FPGA: Recv YRDPOS 122698
17-03-17 22:46:04.728 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 22:46:04.728 -07 000000475 INF: Y Motor: Encoder = 122698 = motor step 95857.8 = 59.9111 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:46:04.728 -07 000000475 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:46:04.728 -07 000000475 INF: Y Motor: Moving 1330 steps2
17-03-17 22:46:04.728 -07 000000576 INF: FPGA: Xmit ZDACW 30500\n [Z Motor]
17-03-17 22:46:04.728 -07 000000512 INF: FPGA: Recv ZDACW
17-03-17 22:46:04.738 -07 000000438 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:46:04.738 -07 000000576 INF: FPGA: 'ZDACW 30500' command took 1 ms to send, 0 ms to get response, and 23 ms overall
17-03-17 22:46:04.748 -07 000000475 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:46:04.758 -07 000000576 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:46:04.758 -07 000000561 INF: FPGA: Recv ZDACR 30500
17-03-17 22:46:04.768 -07 000000576 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:46:04.768 -07 000000576 INF: Z Motor: MoveAbsStepped took 53 ms (did NOT wait for settling yet))
17-03-17 22:46:04.908 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) end. Duration was 403 ms.
17-03-17 22:46:04.908 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 22:46:04.908 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:46:04.918 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 402 ms.
17-03-17 22:46:04.918 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 22:46:04.918 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:46:04.918 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:46:04.918 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 22:46:04.918 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-17 22:46:04.928 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-17 22:46:04.938 -07 000000576 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:46:04.938 -07 000000438 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 22:46:05.118 -07 000000501 INF: FPGA: Recv YMVTILE
17-03-17 22:46:05.118 -07 000000475 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 22:46:05.158 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:46:05.158 -07 000000501 INF: FPGA: Recv YRDPOS 124381
17-03-17 22:46:05.168 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:05.168 -07 000000475 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:46:05.168 -07 000000475 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-17 22:46:05.168 -07 000000475 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.831 mm, average velocity = 2.094 mm/sec
17-03-17 22:46:06.118 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:46:06.118 -07 000000576 INF: FPGA: Recv YRDPOS 124381
17-03-17 22:46:06.128 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:46:06.128 -07 000000475 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:46:06.148 -07 000000475 INF: Y Motor: After move to 60.742607, error = -0.009697, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:46:06.148 -07 000000475 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:46:06.148 -07 000000475 INF: Y Motor: Moved to 60.7329 after 1441 ms (table move)
17-03-17 22:46:06.158 -07 000000486 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139620 mm (DAC = 30500)
17-03-17 22:46:06.158 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:06.158 -07 000000501 INF: FPGA: Recv ZSGSRD 31023
17-03-17 22:46:06.168 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:06.168 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:06.168 -07 000000576 INF: FPGA: Recv ZSGSRD 31027
17-03-17 22:46:06.178 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:06.178 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:06.178 -07 000000512 INF: FPGA: Recv ZSGSRD 31028
17-03-17 22:46:06.188 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:06.188 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:06.188 -07 000000576 INF: FPGA: Recv ZSGSRD 31028
17-03-17 22:46:06.198 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:06.198 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:06.198 -07 000000512 INF: FPGA: Recv ZSGSRD 31029
17-03-17 22:46:06.208 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:06.208 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:06.208 -07 000000478 INF: FPGA: Recv ZSGSRD 31021
17-03-17 22:46:06.218 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:06.218 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:06.218 -07 000000576 INF: FPGA: Recv ZSGSRD 31020
17-03-17 22:46:06.228 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:06.228 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:06.228 -07 000000478 INF: FPGA: Recv ZSGSRD 31018
17-03-17 22:46:06.238 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:06.238 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:06.238 -07 000000512 INF: FPGA: Recv ZSGSRD 31021
17-03-17 22:46:06.248 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:06.248 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:06.248 -07 000000478 INF: FPGA: Recv ZSGSRD 31027
17-03-17 22:46:06.258 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:06.258 -07 000000486 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:46:06.258 -07 000000512 INF: FPGA: Recv ZPIEZORD 26969
17-03-17 22:46:06.268 -07 000000486 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:06.268 -07 000000486 INF: Z Motor: Piezo is near 37.6 V (nominally 0 to 100 V), expect near 46.5 V, since DAC is at 4.654 V. Piezo Error = -8.9 V.
17-03-17 22:46:06.268 -07 000000486 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.6 um, Read 10 ADC samples: Avg = 31024 (-138.8 uncal um), Error = 0.8 uncal um, Median = 31025 (-138.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 31018 (-138.8 uncal um), Max = 31029 (-138.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 22:46:06.268 -07 000000486 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31024, posNoise = 5, negNoise = 6
17-03-17 22:46:06.268 -07 000000486 INF: Z Motor: After move to -0.139620, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:46:06.268 -07 000000486 INF: Z Motor: Settle wait time = 1444 ms, measure time = 110 ms (allowed 150 ms), total time = 1554 ms
17-03-17 22:46:06.268 -07 000000486 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-17 22:46:06.308 -07 000000486 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1596 ms
17-03-17 22:46:06.308 -07 000000486 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:46:06.308 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:46:06.308 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:46:06.308 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:46:06.308 -07 000000551 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:46:06.308 -07 000000482 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:46:06.308 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:46:06.308 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 22:46:06.308 -07 000000482 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:46:06.318 -07 000000482 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:46:06.318 -07 000000482 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:46:06.328 -07 000000482 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-17 22:46:06.328 -07 000000482 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 22:46:06.328 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:46:06.368 -07 000000478 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:46:06.568 -07 000000561 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:46:06.568 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:46:06.568 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:46:06.568 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2270629648, 0x0, 559484976) start.
17-03-17 22:46:06.608 -07 000000547 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:46:06.608 -07 000000627 INF: FPGA: Recv CAMSNAP
17-03-17 22:46:06.608 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 285 ms overall
17-03-17 22:46:06.698 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2270629648, 0x0, 559484976) end. Duration was 128 ms.
17-03-17 22:46:06.698 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:46:06.698 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 22:46:06.698 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-17 22:46:06.808 -07 000000486 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:46:06.808 -07 000000438 INF: Autofocus start
17-03-17 22:46:06.808 -07 000000438 INF: MeasureProfile start
17-03-17 22:46:06.808 -07 000000482 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:46:06.818 -07 000000486 INF: FPGA: 'FOCMRRCUR 80' command took 2 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:46:06.818 -07 000000486 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:46:06.818 -07 000000438 INF: MeasureProfile done
17-03-17 22:46:06.818 -07 000000438 INF: X=0  Z correction [um]=-0.02394831
17-03-17 22:46:06.818 -07 000000438 INF: Autofocus finished
17-03-17 22:46:07.008 -07 000000475 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:46:07.008 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 66. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1047, R2=1076, Total=2123. Warn if over 250 bubbles per interval.
17-03-17 22:46:07.018 -07 000000561 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:46:07.018 -07 000000486 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:46:07.018 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.73291015625, Z-position -0.139628109497127. ----------
17-03-17 22:46:07.018 -07 000000610 INF: Cycle	67	Tile	2	Exposure Settings		A	459	G	221	T	221	C	459
17-03-17 22:46:07.028 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 29007, sync = True, waitForSettling = True)
17-03-17 22:46:07.028 -07 000000610 INF: Z Motor: Moving to -0.132786 mm, started at -0.139628 mm, distance = 6.84 um
17-03-17 22:46:07.028 -07 000000610 INF: FPGA: Xmit ZDACW 29007\n [Z Motor]
17-03-17 22:46:07.028 -07 000000482 INF: FPGA: Recv ZDACW
17-03-17 22:46:07.038 -07 000000610 INF: FPGA: 'ZDACW 29007' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:46:07.038 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:46:07.038 -07 000000482 INF: FPGA: Recv ZDACR 29007
17-03-17 22:46:07.048 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:07.048 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:46:07.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:07.198 -07 000000482 INF: FPGA: Recv ZSGSRD 29957
17-03-17 22:46:07.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:46:07.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:07.208 -07 000000482 INF: FPGA: Recv ZSGSRD 29962
17-03-17 22:46:07.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:07.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:07.218 -07 000000486 INF: FPGA: Recv ZSGSRD 29962
17-03-17 22:46:07.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:07.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:07.228 -07 000000482 INF: FPGA: Recv ZSGSRD 29955
17-03-17 22:46:07.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:07.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:07.238 -07 000000486 INF: FPGA: Recv ZSGSRD 29959
17-03-17 22:46:07.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:07.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:07.248 -07 000000561 INF: FPGA: Recv ZSGSRD 29963
17-03-17 22:46:07.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:07.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:07.258 -07 000000478 INF: FPGA: Recv ZSGSRD 29959
17-03-17 22:46:07.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:07.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:07.268 -07 000000551 INF: FPGA: Recv ZSGSRD 29960
17-03-17 22:46:07.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:07.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:07.278 -07 000000486 INF: FPGA: Recv ZSGSRD 29960
17-03-17 22:46:07.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:07.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:07.288 -07 000000486 INF: FPGA: Recv ZSGSRD 29966
17-03-17 22:46:07.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:07.298 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:46:07.298 -07 000000482 INF: FPGA: Recv ZPIEZORD 25557
17-03-17 22:46:07.308 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:07.308 -07 000000610 INF: Z Motor: Piezo is near 34.6 V (nominally 0 to 100 V), expect near 44.3 V, since DAC is at 4.426 V. Piezo Error = -9.7 V.
17-03-17 22:46:07.308 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.8 um, Read 10 ADC samples: Avg = 29960 (-132.0 uncal um), Error = 0.8 uncal um, Median = 29960 (-132.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29955 (-132.0 uncal um), Max = 29966 (-132.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 22:46:07.308 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29960, posNoise = 6, negNoise = 5
17-03-17 22:46:07.308 -07 000000610 INF: Z Motor: After move to -0.132786, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:46:07.308 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 22:46:07.308 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:46:07.308 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:46:07.308 -07 000000486 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:46:07.308 -07 000000551 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:46:07.308 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:46:07.308 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:46:07.308 -07 000000482 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:46:07.308 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 22:46:07.308 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:46:07.308 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:46:07.308 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:46:07.308 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:46:07.318 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:46:07.318 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:46:07.318 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 22:46:07.318 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:46:07.328 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 22:46:07.328 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 22:46:07.328 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 22:46:07.328 -07 000000482 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 22:46:07.328 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 459 459 221 221 29184 150\n [Camera]
17-03-17 22:46:07.528 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:46:07.988 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 651
17-03-17 22:46:07.988 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 651
17-03-17 22:46:07.988 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:46:07.988 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:46:07.988 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) start.
17-03-17 22:46:07.998 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 651
17-03-17 22:46:07.998 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 651
17-03-17 22:46:07.998 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:46:07.998 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:46:07.998 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 2620985504, 0x0, 418435064) start.
17-03-17 22:46:08.188 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29184 844
17-03-17 22:46:08.338 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning grn on 994
17-03-17 22:46:08.388 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) end. Duration was 396 ms.
17-03-17 22:46:08.388 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 22:46:08.388 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:46:08.388 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:46:08.388 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 22:46:08.398 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 2620985504, 0x0, 418435064) end. Duration was 398 ms.
17-03-17 22:46:08.398 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 22:46:08.398 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:46:08.398 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:46:08.408 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-17 22:46:08.558 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1215
17-03-17 22:46:08.558 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1215
17-03-17 22:46:08.558 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:46:08.558 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:46:08.558 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) start.
17-03-17 22:46:08.558 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1215
17-03-17 22:46:08.558 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1215
17-03-17 22:46:08.558 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:46:08.698 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:46:08.698 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-17 22:46:08.748 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP 1408
17-03-17 22:46:08.748 -07 000000551 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:46:08.748 -07 000000610 INF: FPGA: 'CAMDBLSNAP 459 459 221 221 29184 150' command took 2 ms to send, 1404 ms to get response, and 1414 ms overall
17-03-17 22:46:08.748 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 22:46:08.748 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.73291015625, Z-Position -0.132792747778293. ------
17-03-17 22:46:08.748 -07 000000478 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:46:08.748 -07 000000482 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.13942 mm
17-03-17 22:46:08.748 -07 000000482 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:46:08.758 -07 000000429 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-17 22:46:08.758 -07 000000429 INF: Y Motor: Moving to 61.5726 mm, started at 60.7329 mm, delta = 0.8397 mm
17-03-17 22:46:08.758 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:46:08.758 -07 000000459 INF: Z Motor: Entering MoveAbsStepped (DAC = 30456, sync = True, waitForSettling = False)
17-03-17 22:46:08.758 -07 000000459 INF: Z Motor: Moving to -0.139419 mm, started at -0.132793 mm, distance = -6.63 um
17-03-17 22:46:08.758 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:46:08.758 -07 000000478 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 22:46:08.758 -07 000000618 INF: FPGA: Recv YRDPOS 124382
17-03-17 22:46:08.768 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:46:08.768 -07 000000429 INF: Y Motor: Encoder = 124382 = motor step 97173.4 = 60.7334 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:46:08.768 -07 000000478 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:46:08.768 -07 000000429 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:46:08.768 -07 000000429 INF: Y Motor: Moving 1343 steps-20
17-03-17 22:46:08.778 -07 000000459 INF: FPGA: Xmit ZDACW 30456\n [Z Motor]
17-03-17 22:46:08.778 -07 000000438 INF: FPGA: Recv ZDACW
17-03-17 22:46:08.788 -07 000000459 INF: FPGA: 'ZDACW 30456' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-17 22:46:08.788 -07 000000429 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:46:08.798 -07 000000459 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:46:08.798 -07 000000618 INF: FPGA: Recv ZDACR 30456
17-03-17 22:46:08.808 -07 000000459 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:46:08.808 -07 000000459 INF: Z Motor: MoveAbsStepped took 47 ms (did NOT wait for settling yet))
17-03-17 22:46:08.958 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) end. Duration was 404 ms.
17-03-17 22:46:08.958 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 22:46:08.958 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:46:08.968 -07 000000547 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:46:08.968 -07 000000478 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 210 ms overall
17-03-17 22:46:08.968 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 22:46:08.968 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-17 22:46:09.008 -07 000000459 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 67, FrontChillerTemperature: 4.024884,
17-03-17 22:46:09.088 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 389 ms.
17-03-17 22:46:09.088 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 22:46:09.088 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:46:09.088 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:46:09.088 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 533 ms.
17-03-17 22:46:09.158 -07 000000547 INF: FPGA: Recv YMVTILE
17-03-17 22:46:09.158 -07 000000429 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 390 ms overall
17-03-17 22:46:09.198 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:46:09.208 -07 000000547 INF: FPGA: Recv YRDPOS 126083
17-03-17 22:46:09.208 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 22:46:09.208 -07 000000429 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:46:09.208 -07 000000429 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-17 22:46:09.208 -07 000000429 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 390 ms, distance = 0.840 mm, average velocity = 2.153 mm/sec
17-03-17 22:46:10.158 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:46:10.158 -07 000000576 INF: FPGA: Recv YRDPOS 126083
17-03-17 22:46:10.168 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:46:10.168 -07 000000429 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:46:10.188 -07 000000429 INF: Y Motor: After move to 61.572609, error = -0.008644, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:46:10.188 -07 000000429 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:46:10.188 -07 000000429 INF: Y Motor: Moved to 61.5640 after 1433 ms (table move)
17-03-17 22:46:10.188 -07 000000482 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139419 mm (DAC = 30456)
17-03-17 22:46:10.188 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:10.198 -07 000000459 INF: FPGA: Recv ZSGSRD 31003
17-03-17 22:46:10.198 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 22:46:10.198 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:10.198 -07 000000438 INF: FPGA: Recv ZSGSRD 30988
17-03-17 22:46:10.208 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:46:10.208 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:10.208 -07 000000561 INF: FPGA: Recv ZSGSRD 30992
17-03-17 22:46:10.218 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:10.218 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:10.218 -07 000000429 INF: FPGA: Recv ZSGSRD 30996
17-03-17 22:46:10.228 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:10.228 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:10.228 -07 000000438 INF: FPGA: Recv ZSGSRD 30997
17-03-17 22:46:10.238 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:10.238 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:10.238 -07 000000433 INF: FPGA: Recv ZSGSRD 31003
17-03-17 22:46:10.248 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:10.248 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:10.248 -07 000000501 INF: FPGA: Recv ZSGSRD 30991
17-03-17 22:46:10.258 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:10.258 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:10.258 -07 000000433 INF: FPGA: Recv ZSGSRD 30987
17-03-17 22:46:10.268 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:10.268 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:10.268 -07 000000478 INF: FPGA: Recv ZSGSRD 30987
17-03-17 22:46:10.278 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:10.278 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:10.278 -07 000000433 INF: FPGA: Recv ZSGSRD 30982
17-03-17 22:46:10.288 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:10.288 -07 000000482 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:46:10.288 -07 000000618 INF: FPGA: Recv ZPIEZORD 26928
17-03-17 22:46:10.298 -07 000000482 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:10.298 -07 000000482 INF: Z Motor: Piezo is near 37.5 V (nominally 0 to 100 V), expect near 46.5 V, since DAC is at 4.647 V. Piezo Error = -8.9 V.
17-03-17 22:46:10.298 -07 000000482 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.4 um, Read 10 ADC samples: Avg = 30993 (-138.6 uncal um), Error = 0.8 uncal um, Median = 30992 (-138.6 uncal um), StdDev = 7 (0.0 uncal um), Range = 21 (0.1 uncal um), Min = 30982 (-138.6 uncal um), Max = 31003 (-138.7 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 11 (0.1 uncal um)
17-03-17 22:46:10.298 -07 000000482 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30993, posNoise = 10, negNoise = 11
17-03-17 22:46:10.298 -07 000000482 INF: Z Motor: After move to -0.139419, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:46:10.298 -07 000000482 INF: Z Motor: Settle wait time = 1436 ms, measure time = 101 ms (allowed 150 ms), total time = 1537 ms
17-03-17 22:46:10.298 -07 000000482 INF: Z Motor: Waiting extra 49 ms after reading position to reach expected total of 150 ms
17-03-17 22:46:10.348 -07 000000482 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1590 ms
17-03-17 22:46:10.348 -07 000000482 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:46:10.348 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:46:10.348 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:46:10.348 -07 000000486 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:46:10.348 -07 000000547 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:46:10.348 -07 000000429 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:46:10.348 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:46:10.358 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:46:10.358 -07 000000429 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:46:10.358 -07 000000429 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:46:10.358 -07 000000429 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:46:10.368 -07 000000429 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 22:46:10.368 -07 000000429 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-17 22:46:10.368 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:46:10.408 -07 000000459 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:46:10.608 -07 000000551 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:46:10.608 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:46:10.608 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:46:10.618 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610341080, 0x0, 559484976) start.
17-03-17 22:46:10.648 -07 000000627 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:46:10.648 -07 000000433 INF: FPGA: Recv CAMSNAP
17-03-17 22:46:10.648 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 284 ms overall
17-03-17 22:46:10.728 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610341080, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 22:46:10.728 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:46:10.728 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:46:10.728 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-17 22:46:10.748 -07 000000482 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:46:10.748 -07 000000627 INF: Autofocus start
17-03-17 22:46:10.748 -07 000000627 INF: MeasureProfile start
17-03-17 22:46:10.748 -07 000000459 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:46:10.758 -07 000000482 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 22:46:10.758 -07 000000482 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:46:10.768 -07 000000627 INF: MeasureProfile done
17-03-17 22:46:10.768 -07 000000627 INF: X=16  Z correction [um]=0.0530179
17-03-17 22:46:10.768 -07 000000627 INF: Autofocus finished
17-03-17 22:46:10.958 -07 000000438 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:46:10.958 -07 000000482 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:46:10.958 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.56396484375, Z-position -0.139428958920732. ----------
17-03-17 22:46:10.958 -07 000000610 INF: Cycle	67	Tile	3	Exposure Settings		A	459	G	221	T	221	C	459
17-03-17 22:46:10.968 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28980, sync = True, waitForSettling = True)
17-03-17 22:46:10.968 -07 000000610 INF: Z Motor: Moving to -0.132662 mm, started at -0.139429 mm, distance = 6.77 um
17-03-17 22:46:10.968 -07 000000610 INF: FPGA: Xmit ZDACW 28980\n [Z Motor]
17-03-17 22:46:10.968 -07 000000459 INF: FPGA: Recv ZDACW
17-03-17 22:46:10.978 -07 000000610 INF: FPGA: 'ZDACW 28980' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:46:10.978 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:46:10.978 -07 000000576 INF: FPGA: Recv ZDACR 28980
17-03-17 22:46:10.988 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:10.988 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:46:11.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:11.138 -07 000000551 INF: FPGA: Recv ZSGSRD 29946
17-03-17 22:46:11.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:46:11.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:11.148 -07 000000627 INF: FPGA: Recv ZSGSRD 29941
17-03-17 22:46:11.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:11.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:11.158 -07 000000486 INF: FPGA: Recv ZSGSRD 29943
17-03-17 22:46:11.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:11.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:11.168 -07 000000478 INF: FPGA: Recv ZSGSRD 29944
17-03-17 22:46:11.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:11.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:11.178 -07 000000551 INF: FPGA: Recv ZSGSRD 29941
17-03-17 22:46:11.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:11.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:11.188 -07 000000482 INF: FPGA: Recv ZSGSRD 29943
17-03-17 22:46:11.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:11.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:11.198 -07 000000482 INF: FPGA: Recv ZSGSRD 29946
17-03-17 22:46:11.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:11.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:11.208 -07 000000482 INF: FPGA: Recv ZSGSRD 29944
17-03-17 22:46:11.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:11.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:11.218 -07 000000551 INF: FPGA: Recv ZSGSRD 29942
17-03-17 22:46:11.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:11.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:11.228 -07 000000576 INF: FPGA: Recv ZSGSRD 29941
17-03-17 22:46:11.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:11.238 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:46:11.238 -07 000000482 INF: FPGA: Recv ZPIEZORD 25555
17-03-17 22:46:11.248 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:11.248 -07 000000610 INF: Z Motor: Piezo is near 34.6 V (nominally 0 to 100 V), expect near 44.2 V, since DAC is at 4.422 V. Piezo Error = -9.6 V.
17-03-17 22:46:11.248 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.7 um, Read 10 ADC samples: Avg = 29943 (-131.9 uncal um), Error = 0.8 uncal um, Median = 29943 (-131.9 uncal um), StdDev = 2 (0.0 uncal um), Range = 5 (0.0 uncal um), Min = 29941 (-131.9 uncal um), Max = 29946 (-131.9 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 2 (0.0 uncal um)
17-03-17 22:46:11.248 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29943, posNoise = 3, negNoise = 2
17-03-17 22:46:11.248 -07 000000610 INF: Z Motor: After move to -0.132662, error = -0.000022, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:46:11.248 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 22:46:11.248 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:46:11.248 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:46:11.248 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:46:11.248 -07 000000482 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:46:11.248 -07 000000478 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:46:11.248 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:46:11.248 -07 000000551 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:46:11.248 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:46:11.248 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 22:46:11.248 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:46:11.248 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:46:11.248 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:46:11.258 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 22:46:11.258 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:46:11.258 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:46:11.258 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:46:11.268 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 22:46:11.268 -07 000000478 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 22:46:11.268 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 22:46:11.268 -07 000000551 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 22:46:11.268 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 459 459 221 221 29157 150\n [Camera]
17-03-17 22:46:11.468 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:46:11.928 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 651
17-03-17 22:46:11.928 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 651
17-03-17 22:46:11.928 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:46:11.928 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 651
17-03-17 22:46:11.928 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 651
17-03-17 22:46:11.928 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:46:11.928 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:46:11.928 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-17 22:46:11.938 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:46:11.938 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-17 22:46:12.008 -07 000000551 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:46:12.008 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 66. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1047, R2=1076, Total=2123. Warn if over 250 bubbles per interval.
17-03-17 22:46:12.118 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29157 844
17-03-17 22:46:12.268 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning grn on 994
17-03-17 22:46:12.328 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 392 ms.
17-03-17 22:46:12.328 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 389 ms.
17-03-17 22:46:12.328 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 22:46:12.328 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:46:12.328 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 22:46:12.328 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:46:12.328 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:46:12.328 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:46:12.328 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 22:46:12.338 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-17 22:46:12.488 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1215
17-03-17 22:46:12.488 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1215
17-03-17 22:46:12.488 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:46:12.498 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1215
17-03-17 22:46:12.498 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1215
17-03-17 22:46:12.498 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:46:12.608 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:46:12.608 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) start.
17-03-17 22:46:12.618 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:46:12.618 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-17 22:46:12.678 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP 1408
17-03-17 22:46:12.678 -07 000000478 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:46:12.678 -07 000000610 INF: FPGA: 'CAMDBLSNAP 459 459 221 221 29157 150' command took 2 ms to send, 1408 ms to get response, and 1415 ms overall
17-03-17 22:46:12.688 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 22:46:12.688 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.56396484375, Z-Position -0.132683536171883. ------
17-03-17 22:46:12.688 -07 000000478 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:46:13.008 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 390 ms.
17-03-17 22:46:13.008 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 22:46:13.008 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:46:13.008 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) end. Duration was 395 ms.
17-03-17 22:46:13.008 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 22:46:13.008 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:46:13.008 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:46:13.008 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:46:13.008 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 520 ms.
17-03-17 22:46:13.018 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 521 ms.
17-03-17 22:46:13.018 -07 000000551 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.13904 mm
17-03-17 22:46:13.018 -07 000000551 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:46:13.028 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:46:13.028 -07 000000478 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 333 ms to get response, and 338 ms overall
17-03-17 22:46:13.028 -07 000000478 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:46:13.028 -07 000000576 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-17 22:46:13.028 -07 000000576 INF: Y Motor: Moving to 62.4026 mm, started at 61.5640 mm, delta = 0.8386 mm
17-03-17 22:46:13.038 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:46:13.728 -07 000000458 INF: Z Motor: Entering MoveAbsStepped (DAC = 30372, sync = True, waitForSettling = False)
17-03-17 22:46:13.728 -07 000000458 INF: Z Motor: Moving to -0.139034 mm, started at -0.132684 mm, distance = -6.35 um
17-03-17 22:46:13.728 -07 000000458 INF: FPGA: Xmit ZDACW 30372\n [Z Motor]
17-03-17 22:46:14.728 -07 000000475 INF: FPGA: Recv YRDPOS 126083
17-03-17 22:46:14.728 -07 000000475 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:46:14.728 -07 000000475 INF: FPGA: Recv ZDACW
17-03-17 22:46:14.728 -07 000000478 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 1690 ms to get response, and 1697 ms overall
17-03-17 22:46:14.728 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1680 ms to get response, and 1693 ms overall
17-03-17 22:46:14.728 -07 000000458 INF: FPGA: 'ZDACW 30372' command took 0 ms to send, 990 ms to get response, and 998 ms overall
17-03-17 22:46:14.728 -07 000000458 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:46:14.728 -07 000000576 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:46:14.728 -07 000000576 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:46:14.728 -07 000000576 INF: Y Motor: Moving 1342 steps-18
17-03-17 22:46:14.728 -07 000000475 INF: FPGA: Recv ZDACR 30372
17-03-17 22:46:14.738 -07 000000576 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:46:14.738 -07 000000458 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:46:14.738 -07 000000458 INF: Z Motor: MoveAbsStepped took 1008 ms (did NOT wait for settling yet))
17-03-17 22:46:15.038 -07 000000478 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 67, FrontChillerTemperature: 4.016692,
17-03-17 22:46:15.108 -07 000000512 INF: FPGA: Recv YMVTILE
17-03-17 22:46:15.108 -07 000000576 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 386 ms overall
17-03-17 22:46:15.158 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:46:15.158 -07 000000475 INF: FPGA: Recv YRDPOS 127786
17-03-17 22:46:15.168 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:15.168 -07 000000576 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:46:15.168 -07 000000576 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-17 22:46:15.168 -07 000000576 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 386 ms, distance = 0.839 mm, average velocity = 2.173 mm/sec
17-03-17 22:46:16.118 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:46:16.118 -07 000000478 INF: FPGA: Recv YRDPOS 127786
17-03-17 22:46:16.128 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:46:16.128 -07 000000576 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:46:16.148 -07 000000576 INF: Y Motor: After move to 62.402607, error = -0.007099, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:46:16.148 -07 000000576 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:46:16.148 -07 000000576 INF: Y Motor: Moved to 62.3955 after 3117 ms (table move)
17-03-17 22:46:16.148 -07 000000551 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139034 mm (DAC = 30372)
17-03-17 22:46:16.148 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:16.158 -07 000000458 INF: FPGA: Recv ZSGSRD 30935
17-03-17 22:46:16.158 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 22:46:16.158 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:16.158 -07 000000475 INF: FPGA: Recv ZSGSRD 30925
17-03-17 22:46:16.168 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:16.168 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:16.168 -07 000000475 INF: FPGA: Recv ZSGSRD 30940
17-03-17 22:46:16.178 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:16.178 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:16.178 -07 000000475 INF: FPGA: Recv ZSGSRD 30929
17-03-17 22:46:16.188 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:16.188 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:16.188 -07 000000475 INF: FPGA: Recv ZSGSRD 30930
17-03-17 22:46:16.198 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:16.198 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:16.198 -07 000000458 INF: FPGA: Recv ZSGSRD 30927
17-03-17 22:46:16.208 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:16.208 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:16.208 -07 000000458 INF: FPGA: Recv ZSGSRD 30932
17-03-17 22:46:16.218 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:16.218 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:16.218 -07 000000458 INF: FPGA: Recv ZSGSRD 30933
17-03-17 22:46:16.228 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:16.228 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:16.228 -07 000000458 INF: FPGA: Recv ZSGSRD 30933
17-03-17 22:46:16.238 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:16.238 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:16.238 -07 000000561 INF: FPGA: Recv ZSGSRD 30935
17-03-17 22:46:16.248 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:16.248 -07 000000551 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:46:16.248 -07 000000458 INF: FPGA: Recv ZPIEZORD 26878
17-03-17 22:46:16.258 -07 000000551 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:16.258 -07 000000551 INF: Z Motor: Piezo is near 37.4 V (nominally 0 to 100 V), expect near 46.3 V, since DAC is at 4.634 V. Piezo Error = -8.9 V.
17-03-17 22:46:16.258 -07 000000551 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.0 um, Read 10 ADC samples: Avg = 30932 (-138.2 uncal um), Error = 0.8 uncal um, Median = 30932 (-138.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30925 (-138.2 uncal um), Max = 30940 (-138.3 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 22:46:16.258 -07 000000551 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30932, posNoise = 8, negNoise = 7
17-03-17 22:46:16.258 -07 000000551 INF: Z Motor: After move to -0.139034, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:46:16.258 -07 000000551 INF: Z Motor: Settle wait time = 2425 ms, measure time = 103 ms (allowed 150 ms), total time = 2528 ms
17-03-17 22:46:16.258 -07 000000551 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 22:46:16.308 -07 000000551 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 3280 ms
17-03-17 22:46:16.308 -07 000000551 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:46:16.308 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:46:16.308 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:46:16.308 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:46:16.308 -07 000000459 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:46:16.308 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:46:16.308 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:46:16.308 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:46:16.308 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:46:16.318 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:46:16.318 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:46:16.318 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 22:46:16.318 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 22:46:16.328 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:46:16.368 -07 000000486 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:46:16.568 -07 000000561 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:46:16.568 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:46:16.568 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:46:16.568 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1094749800, 0x0, 559484976) start.
17-03-17 22:46:16.608 -07 000000475 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:46:16.608 -07 000000458 INF: FPGA: Recv CAMSNAP
17-03-17 22:46:16.608 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 285 ms overall
17-03-17 22:46:16.688 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1094749800, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 22:46:16.688 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:46:16.688 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:46:16.688 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 22:46:16.708 -07 000000486 INF: Autofocus start
17-03-17 22:46:16.708 -07 000000486 INF: MeasureProfile start
17-03-17 22:46:16.708 -07 000000551 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:46:16.718 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:46:16.718 -07 000000551 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 22:46:16.718 -07 000000551 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:46:16.728 -07 000000486 INF: MeasureProfile done
17-03-17 22:46:16.728 -07 000000486 INF: X=16  Z correction [um]=0.0530179
17-03-17 22:46:16.728 -07 000000486 INF: Autofocus finished
17-03-17 22:46:16.918 -07 000000438 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:46:16.918 -07 000000551 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-17 22:46:16.918 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.3955078125, Z-position -0.139037081980085. ----------
17-03-17 22:46:16.928 -07 000000610 INF: Cycle	67	Tile	4	Exposure Settings		A	459	G	221	T	221	C	459
17-03-17 22:46:16.928 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28896, sync = True, waitForSettling = True)
17-03-17 22:46:16.928 -07 000000610 INF: Z Motor: Moving to -0.132277 mm, started at -0.139037 mm, distance = 6.76 um
17-03-17 22:46:16.928 -07 000000610 INF: FPGA: Xmit ZDACW 28896\n [Z Motor]
17-03-17 22:46:16.928 -07 000000512 INF: FPGA: Recv ZDACW
17-03-17 22:46:16.938 -07 000000610 INF: FPGA: 'ZDACW 28896' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:46:16.938 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:46:16.938 -07 000000576 INF: FPGA: Recv ZDACR 28896
17-03-17 22:46:16.948 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:16.948 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:46:17.008 -07 000000458 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:46:17.008 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 66. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1047, R2=1076, Total=2123. Warn if over 250 bubbles per interval.
17-03-17 22:46:17.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:17.098 -07 000000458 INF: FPGA: Recv ZSGSRD 29876
17-03-17 22:46:17.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:46:17.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:17.108 -07 000000458 INF: FPGA: Recv ZSGSRD 29883
17-03-17 22:46:17.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:17.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:17.118 -07 000000458 INF: FPGA: Recv ZSGSRD 29873
17-03-17 22:46:17.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:17.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:17.128 -07 000000478 INF: FPGA: Recv ZSGSRD 29884
17-03-17 22:46:17.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:17.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:17.138 -07 000000458 INF: FPGA: Recv ZSGSRD 29878
17-03-17 22:46:17.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:17.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:17.148 -07 000000458 INF: FPGA: Recv ZSGSRD 29882
17-03-17 22:46:17.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:17.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:17.158 -07 000000478 INF: FPGA: Recv ZSGSRD 29879
17-03-17 22:46:17.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:17.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:17.168 -07 000000478 INF: FPGA: Recv ZSGSRD 29876
17-03-17 22:46:17.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:17.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:17.178 -07 000000475 INF: FPGA: Recv ZSGSRD 29865
17-03-17 22:46:17.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:17.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:17.188 -07 000000475 INF: FPGA: Recv ZSGSRD 29885
17-03-17 22:46:17.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:17.198 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:46:17.198 -07 000000475 INF: FPGA: Recv ZPIEZORD 25507
17-03-17 22:46:17.208 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:17.208 -07 000000610 INF: Z Motor: Piezo is near 34.5 V (nominally 0 to 100 V), expect near 44.1 V, since DAC is at 4.409 V. Piezo Error = -9.6 V.
17-03-17 22:46:17.208 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.3 um, Read 10 ADC samples: Avg = 29878 (-131.5 uncal um), Error = 0.8 uncal um, Median = 29878 (-131.5 uncal um), StdDev = 6 (0.0 uncal um), Range = 20 (0.1 uncal um), Min = 29865 (-131.4 uncal um), Max = 29885 (-131.5 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 13 (0.1 uncal um)
17-03-17 22:46:17.208 -07 000000610 INF: Z Motor: ADC noise = 13, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29878, posNoise = 7, negNoise = 13
17-03-17 22:46:17.208 -07 000000610 INF: Z Motor: After move to -0.132277, error = 0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:46:17.208 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-17 22:46:17.208 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:46:17.208 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:46:17.208 -07 000000551 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:46:17.208 -07 000000486 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:46:17.208 -07 000000459 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:46:17.208 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:46:17.208 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:46:17.208 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:46:17.208 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:46:17.208 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:46:17.208 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:46:17.208 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:46:17.218 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:46:17.218 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:46:17.218 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 22:46:17.218 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:46:17.228 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 12 ms.
17-03-17 22:46:17.228 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 18 ms.
17-03-17 22:46:17.228 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 12 ms.
17-03-17 22:46:17.228 -07 000000459 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 22:46:17.228 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 459 459 221 221 29073 150\n [Camera]
17-03-17 22:46:17.428 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:46:17.888 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 652
17-03-17 22:46:17.888 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 652
17-03-17 22:46:17.888 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:46:17.898 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 652
17-03-17 22:46:17.898 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 652
17-03-17 22:46:17.898 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:46:17.898 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:46:17.898 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 22:46:17.898 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:46:17.898 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 22:46:18.078 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29073 844
17-03-17 22:46:18.228 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning grn on 994
17-03-17 22:46:18.278 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 22:46:18.278 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-17 22:46:18.278 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:46:18.278 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 384 ms.
17-03-17 22:46:18.278 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 22:46:18.278 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:46:18.288 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 22:46:18.288 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:46:18.288 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 22:46:18.288 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 22:46:18.458 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1215
17-03-17 22:46:18.458 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1215
17-03-17 22:46:18.458 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:46:18.458 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1215
17-03-17 22:46:18.458 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1215
17-03-17 22:46:18.458 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:46:18.458 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:46:18.458 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 22:46:18.458 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:46:18.458 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-17 22:46:18.648 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP 1407
17-03-17 22:46:18.648 -07 000000576 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:46:18.648 -07 000000610 INF: FPGA: 'CAMDBLSNAP 459 459 221 221 29073 150' command took 2 ms to send, 1402 ms to get response, and 1414 ms overall
17-03-17 22:46:18.648 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 22:46:18.648 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.3955078125, Z-Position -0.132265962382669. ------
17-03-17 22:46:18.648 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:46:18.648 -07 000000438 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.13903 mm
17-03-17 22:46:18.648 -07 000000438 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:46:18.838 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 375 ms.
17-03-17 22:46:18.838 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 375 ms.
17-03-17 22:46:18.838 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:46:18.838 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 377 ms.
17-03-17 22:46:18.838 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-17 22:46:18.838 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:46:18.838 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 22:46:18.838 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 22:46:18.838 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 22:46:18.848 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 22:46:18.858 -07 000000561 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-17 22:46:18.858 -07 000000561 INF: Y Motor: Moving to 63.2326 mm, started at 62.3955 mm, delta = 0.8371 mm
17-03-17 22:46:18.858 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:46:18.858 -07 000000433 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:46:18.858 -07 000000433 INF: FPGA: Recv YRDPOS 127787
17-03-17 22:46:18.858 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 208 ms to get response, and 210 ms overall
17-03-17 22:46:18.858 -07 000000433 INF: Z Motor: Entering MoveAbsStepped (DAC = 30372, sync = True, waitForSettling = False)
17-03-17 22:46:18.858 -07 000000433 INF: Z Motor: Moving to -0.139034 mm, started at -0.132266 mm, distance = -6.77 um
17-03-17 22:46:18.868 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:46:18.868 -07 000000561 INF: Y Motor: Encoder = 127787 = motor step 99833.6 = 62.3960 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:46:18.868 -07 000000433 INF: FPGA: Xmit ZDACW 30372\n [Z Motor]
17-03-17 22:46:18.868 -07 000000561 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:46:18.868 -07 000000561 INF: Y Motor: Moving 1339 steps-15
17-03-17 22:46:18.878 -07 000000576 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:46:18.888 -07 000000561 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:46:19.728 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 22:46:19.728 -07 000000501 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:46:19.728 -07 000000433 INF: FPGA: 'ZDACW 30372' command took 0 ms to send, 850 ms to get response, and 861 ms overall
17-03-17 22:46:19.728 -07 000000501 INF: FPGA: Recv YMVTILE
17-03-17 22:46:19.728 -07 000000561 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 830 ms to get response, and 855 ms overall
17-03-17 22:46:19.728 -07 000000433 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:46:19.728 -07 000000576 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 840 ms to get response, and 861 ms overall
17-03-17 22:46:19.728 -07 000000576 INF: FPGA: Recv ZDACR 30372
17-03-17 22:46:19.738 -07 000000433 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:19.738 -07 000000433 INF: Z Motor: MoveAbsStepped took 870 ms (did NOT wait for settling yet))
17-03-17 22:46:19.788 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:46:19.788 -07 000000433 INF: FPGA: Recv YRDPOS 129483
17-03-17 22:46:19.798 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 22:46:19.798 -07 000000561 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:46:19.798 -07 000000561 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-17 22:46:19.798 -07 000000561 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 856 ms, distance = 0.837 mm, average velocity = 0.978 mm/sec
17-03-17 22:46:20.408 -07 000000429 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 67, FrontChillerTemperature: 4.007176,
17-03-17 22:46:20.748 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:46:20.748 -07 000000433 INF: FPGA: Recv YRDPOS 129483
17-03-17 22:46:20.758 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:20.758 -07 000000561 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:46:20.778 -07 000000561 INF: Y Motor: After move to 63.232609, error = -0.008488, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:46:20.778 -07 000000561 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:46:20.778 -07 000000561 INF: Y Motor: Moved to 63.2241 after 1924 ms (table move)
17-03-17 22:46:20.778 -07 000000438 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139034 mm (DAC = 30372)
17-03-17 22:46:20.778 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:20.788 -07 000000618 INF: FPGA: Recv ZSGSRD 30933
17-03-17 22:46:20.798 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:46:20.798 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:20.798 -07 000000561 INF: FPGA: Recv ZSGSRD 30930
17-03-17 22:46:20.808 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:20.808 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:20.808 -07 000000433 INF: FPGA: Recv ZSGSRD 30934
17-03-17 22:46:20.818 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:20.818 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:20.818 -07 000000576 INF: FPGA: Recv ZSGSRD 30931
17-03-17 22:46:20.828 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:20.828 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:20.828 -07 000000561 INF: FPGA: Recv ZSGSRD 30937
17-03-17 22:46:20.838 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:20.838 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:20.838 -07 000000429 INF: FPGA: Recv ZSGSRD 30928
17-03-17 22:46:20.848 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:20.848 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:20.848 -07 000000618 INF: FPGA: Recv ZSGSRD 30935
17-03-17 22:46:20.858 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:20.858 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:20.858 -07 000000429 INF: FPGA: Recv ZSGSRD 30934
17-03-17 22:46:20.868 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:20.868 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:20.868 -07 000000618 INF: FPGA: Recv ZSGSRD 30934
17-03-17 22:46:20.878 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:20.878 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:20.878 -07 000000429 INF: FPGA: Recv ZSGSRD 30928
17-03-17 22:46:20.888 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:20.888 -07 000000438 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:46:20.888 -07 000000618 INF: FPGA: Recv ZPIEZORD 26888
17-03-17 22:46:20.898 -07 000000438 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:20.898 -07 000000438 INF: Z Motor: Piezo is near 37.4 V (nominally 0 to 100 V), expect near 46.3 V, since DAC is at 4.634 V. Piezo Error = -8.9 V.
17-03-17 22:46:20.898 -07 000000438 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.0 um, Read 10 ADC samples: Avg = 30932 (-138.2 uncal um), Error = 0.8 uncal um, Median = 30934 (-138.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 30928 (-138.2 uncal um), Max = 30937 (-138.3 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 22:46:20.898 -07 000000438 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30932, posNoise = 5, negNoise = 4
17-03-17 22:46:20.898 -07 000000438 INF: Z Motor: After move to -0.139034, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:46:20.898 -07 000000438 INF: Z Motor: Settle wait time = 1920 ms, measure time = 111 ms (allowed 150 ms), total time = 2031 ms
17-03-17 22:46:20.898 -07 000000438 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-17 22:46:20.938 -07 000000438 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2282 ms
17-03-17 22:46:20.938 -07 000000438 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:46:20.938 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:46:20.938 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:46:20.938 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:46:20.938 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:46:20.938 -07 000000627 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:46:20.938 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:46:20.938 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:46:20.938 -07 000000627 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:46:20.948 -07 000000627 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:46:20.948 -07 000000627 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:46:20.958 -07 000000627 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 15 ms.
17-03-17 22:46:20.958 -07 000000627 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 19 ms.
17-03-17 22:46:20.958 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:46:21.008 -07 000000618 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:46:21.208 -07 000000438 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:46:21.208 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:46:21.208 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:46:21.318 -07 000000618 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:46:21.318 -07 000000618 INF: FPGA: Recv CAMSNAP
17-03-17 22:46:21.318 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 346 ms to get response, and 357 ms overall
17-03-17 22:46:21.318 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1113831184, 0x0, 559484976) start.
17-03-17 22:46:21.448 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1113831184, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 22:46:21.448 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:46:21.448 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:46:21.448 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 239 ms.
17-03-17 22:46:21.518 -07 000000627 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:46:21.518 -07 000000501 INF: Autofocus start
17-03-17 22:46:21.518 -07 000000501 INF: MeasureProfile start
17-03-17 22:46:21.518 -07 000000433 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:46:21.528 -07 000000627 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:46:21.528 -07 000000627 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:46:21.528 -07 000000501 INF: MeasureProfile done
17-03-17 22:46:21.528 -07 000000501 INF: X=-18  Z correction [um]=-0.09102372
17-03-17 22:46:21.528 -07 000000501 INF: Autofocus finished
17-03-17 22:46:21.728 -07 000000429 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:46:21.728 -07 000000627 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:46:21.728 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.22412109375, Z-position -0.139037081980085. ----------
17-03-17 22:46:21.738 -07 000000610 INF: Cycle	67	Tile	5	Exposure Settings		A	459	G	221	T	221	C	459
17-03-17 22:46:21.738 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28865, sync = True, waitForSettling = True)
17-03-17 22:46:21.738 -07 000000610 INF: Z Motor: Moving to -0.132136 mm, started at -0.139037 mm, distance = 6.90 um
17-03-17 22:46:21.738 -07 000000610 INF: FPGA: Xmit ZDACW 28865\n [Z Motor]
17-03-17 22:46:21.738 -07 000000561 INF: FPGA: Recv ZDACW
17-03-17 22:46:21.748 -07 000000610 INF: FPGA: 'ZDACW 28865' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:46:21.748 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:46:21.748 -07 000000501 INF: FPGA: Recv ZDACR 28865
17-03-17 22:46:21.758 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:21.758 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:46:21.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:21.908 -07 000000618 INF: FPGA: Recv ZSGSRD 29859
17-03-17 22:46:21.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:46:21.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:21.918 -07 000000501 INF: FPGA: Recv ZSGSRD 29859
17-03-17 22:46:21.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:21.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:21.928 -07 000000618 INF: FPGA: Recv ZSGSRD 29859
17-03-17 22:46:21.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:21.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:21.938 -07 000000561 INF: FPGA: Recv ZSGSRD 29860
17-03-17 22:46:21.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:21.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:21.948 -07 000000433 INF: FPGA: Recv ZSGSRD 29858
17-03-17 22:46:21.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:21.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:21.958 -07 000000576 INF: FPGA: Recv ZSGSRD 29865
17-03-17 22:46:21.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:21.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:21.968 -07 000000618 INF: FPGA: Recv ZSGSRD 29861
17-03-17 22:46:21.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:21.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:21.978 -07 000000429 INF: FPGA: Recv ZSGSRD 29862
17-03-17 22:46:21.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:21.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:21.988 -07 000000433 INF: FPGA: Recv ZSGSRD 29857
17-03-17 22:46:21.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:21.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:21.998 -07 000000501 INF: FPGA: Recv ZSGSRD 29861
17-03-17 22:46:22.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:22.008 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:46:22.008 -07 000000429 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:46:22.008 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 66. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1047, R2=1076, Total=2123. Warn if over 250 bubbles per interval.
17-03-17 22:46:22.008 -07 000000627 INF: FPGA: Recv ZPIEZORD 25493
17-03-17 22:46:22.018 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:22.018 -07 000000610 INF: Z Motor: Piezo is near 34.5 V (nominally 0 to 100 V), expect near 44.0 V, since DAC is at 4.405 V. Piezo Error = -9.6 V.
17-03-17 22:46:22.018 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.1 um, Read 10 ADC samples: Avg = 29860 (-131.4 uncal um), Error = 0.8 uncal um, Median = 29860 (-131.4 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29857 (-131.3 uncal um), Max = 29865 (-131.4 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 22:46:22.018 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29860, posNoise = 5, negNoise = 3
17-03-17 22:46:22.018 -07 000000610 INF: Z Motor: After move to -0.132136, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:46:22.018 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 22:46:22.018 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:46:22.018 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:46:22.018 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:46:22.018 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:46:22.018 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:46:22.018 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:46:22.018 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:46:22.018 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:46:22.018 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:46:22.018 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:46:22.018 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:46:22.018 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:46:22.018 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 22:46:22.028 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:46:22.028 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:46:22.028 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:46:22.038 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-17 22:46:22.038 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 18 ms.
17-03-17 22:46:22.038 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-17 22:46:22.038 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 22:46:22.038 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 459 459 221 221 29042 150\n [Camera]
17-03-17 22:46:22.238 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:46:22.698 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 651
17-03-17 22:46:22.698 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 651
17-03-17 22:46:22.698 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:46:22.708 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 651
17-03-17 22:46:22.708 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 651
17-03-17 22:46:22.708 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:46:22.708 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:46:22.708 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 583729424, 0x0, 391868352) start.
17-03-17 22:46:22.708 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:46:22.708 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-17 22:46:22.898 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29042 844
17-03-17 22:46:23.038 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP turning grn on 994
17-03-17 22:46:23.108 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 583729424, 0x0, 391868352) end. Duration was 397 ms.
17-03-17 22:46:23.108 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 22:46:23.108 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:46:23.108 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 396 ms.
17-03-17 22:46:23.108 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 22:46:23.108 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:46:23.108 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:46:23.108 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 22:46:23.108 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:46:23.118 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-17 22:46:23.268 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1215
17-03-17 22:46:23.268 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1215
17-03-17 22:46:23.268 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:46:23.268 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1215
17-03-17 22:46:23.268 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1215
17-03-17 22:46:23.268 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:46:23.378 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:46:23.378 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 22:46:23.378 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:46:23.378 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1124101960, 0x0, 391868352) start.
17-03-17 22:46:23.458 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP 1407
17-03-17 22:46:23.458 -07 000000627 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:46:23.458 -07 000000610 INF: FPGA: 'CAMDBLSNAP 459 459 221 221 29042 150' command took 4 ms to send, 1403 ms to get response, and 1415 ms overall
17-03-17 22:46:23.458 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 22:46:23.458 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.22412109375, Z-Position -0.132150326564117. ------
17-03-17 22:46:23.458 -07 000000627 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:46:23.458 -07 000000501 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.13859 mm
17-03-17 22:46:23.458 -07 000000501 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:46:23.778 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 401 ms.
17-03-17 22:46:23.778 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 22:46:23.778 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:46:23.778 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1124101960, 0x0, 391868352) end. Duration was 401 ms.
17-03-17 22:46:23.778 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 22:46:23.778 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:46:23.788 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:46:23.788 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:46:23.788 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 520 ms.
17-03-17 22:46:23.788 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 521 ms.
17-03-17 22:46:23.798 -07 000000561 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-17 22:46:23.798 -07 000000561 INF: Y Motor: Moving to 64.0626 mm, started at 63.2241 mm, delta = 0.8385 mm
17-03-17 22:46:23.798 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:46:23.798 -07 000000547 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:46:23.798 -07 000000547 INF: FPGA: Recv YRDPOS 129484
17-03-17 22:46:23.808 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:46:23.808 -07 000000627 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 337 ms to get response, and 339 ms overall
17-03-17 22:46:23.808 -07 000000561 INF: Y Motor: Encoder = 129484 = motor step 101159.4 = 63.2246 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:46:23.808 -07 000000627 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:46:23.808 -07 000000547 INF: Z Motor: Entering MoveAbsStepped (DAC = 30274, sync = True, waitForSettling = False)
17-03-17 22:46:23.808 -07 000000547 INF: Z Motor: Moving to -0.138585 mm, started at -0.132150 mm, distance = -6.44 um
17-03-17 22:46:23.808 -07 000000561 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:46:23.808 -07 000000561 INF: Y Motor: Moving 1341 steps-17
17-03-17 22:46:23.818 -07 000000561 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:46:23.828 -07 000000547 INF: FPGA: Xmit ZDACW 30274\n [Z Motor]
17-03-17 22:46:24.728 -07 000000458 INF: FPGA: Recv ZDACW
17-03-17 22:46:24.728 -07 000000458 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:46:24.728 -07 000000458 INF: FPGA: Recv YMVTILE
17-03-17 22:46:24.728 -07 000000561 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 900 ms to get response, and 916 ms overall
17-03-17 22:46:24.728 -07 000000547 INF: FPGA: 'ZDACW 30274' command took 0 ms to send, 890 ms to get response, and 918 ms overall
17-03-17 22:46:24.728 -07 000000627 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 910 ms to get response, and 919 ms overall
17-03-17 22:46:24.728 -07 000000547 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:46:24.728 -07 000000458 INF: FPGA: Recv ZDACR 30274
17-03-17 22:46:24.738 -07 000000547 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:46:24.738 -07 000000547 INF: Z Motor: MoveAbsStepped took 927 ms (did NOT wait for settling yet))
17-03-17 22:46:24.768 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:46:24.768 -07 000000547 INF: FPGA: Recv YRDPOS 131189
17-03-17 22:46:24.778 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:46:24.778 -07 000000561 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:46:24.778 -07 000000561 INF: Y Motor: Position error before settling (table move) = -11 encoder counts (-0.005 mm)
17-03-17 22:46:24.778 -07 000000561 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 916 ms, distance = 0.838 mm, average velocity = 0.915 mm/sec
17-03-17 22:46:25.728 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:46:25.728 -07 000000458 INF: FPGA: Recv YRDPOS 131189
17-03-17 22:46:25.738 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:46:25.738 -07 000000561 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:46:25.758 -07 000000561 INF: Y Motor: After move to 64.062607, error = -0.005478, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:46:25.758 -07 000000561 INF: Y Motor: Position error after settling (table move) = -11 encoder counts (-0.005 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:46:25.758 -07 000000561 INF: Y Motor: Moved to 64.0571 after 1959 ms (table move)
17-03-17 22:46:25.758 -07 000000501 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138585 mm (DAC = 30274)
17-03-17 22:46:25.768 -07 000000547 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 67, FrontChillerTemperature: 4.001704,
17-03-17 22:46:25.778 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:25.778 -07 000000547 INF: FPGA: Recv ZSGSRD 30859
17-03-17 22:46:25.788 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-17 22:46:25.798 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:25.798 -07 000000458 INF: FPGA: Recv ZSGSRD 30864
17-03-17 22:46:25.808 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:46:25.808 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:25.808 -07 000000458 INF: FPGA: Recv ZSGSRD 30865
17-03-17 22:46:25.818 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:25.838 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:25.838 -07 000000561 INF: FPGA: Recv ZSGSRD 30865
17-03-17 22:46:25.848 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:46:25.848 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:25.848 -07 000000561 INF: FPGA: Recv ZSGSRD 30861
17-03-17 22:46:25.858 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:25.868 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:25.868 -07 000000458 INF: FPGA: Recv ZSGSRD 30869
17-03-17 22:46:25.878 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:46:25.878 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:25.878 -07 000000627 INF: FPGA: Recv ZSGSRD 30862
17-03-17 22:46:25.888 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:25.888 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:25.888 -07 000000458 INF: FPGA: Recv ZSGSRD 30868
17-03-17 22:46:25.898 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:25.898 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:25.898 -07 000000561 INF: FPGA: Recv ZSGSRD 30868
17-03-17 22:46:25.908 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:25.908 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:25.908 -07 000000478 INF: FPGA: Recv ZSGSRD 30858
17-03-17 22:46:25.918 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:25.918 -07 000000501 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:46:25.918 -07 000000459 INF: FPGA: Recv ZPIEZORD 26844
17-03-17 22:46:25.928 -07 000000501 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:25.928 -07 000000501 INF: Z Motor: Piezo is near 37.3 V (nominally 0 to 100 V), expect near 46.2 V, since DAC is at 4.620 V. Piezo Error = -8.8 V.
17-03-17 22:46:25.928 -07 000000501 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.6 um, Read 10 ADC samples: Avg = 30864 (-137.8 uncal um), Error = 0.8 uncal um, Median = 30864 (-137.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30858 (-137.8 uncal um), Max = 30869 (-137.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 22:46:25.928 -07 000000501 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30864, posNoise = 5, negNoise = 6
17-03-17 22:46:25.928 -07 000000501 INF: Z Motor: After move to -0.138585, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:46:25.928 -07 000000501 INF: Z Motor: Settle wait time = 1954 ms, measure time = 163 ms (allowed 150 ms), total time = 2117 ms
17-03-17 22:46:25.928 -07 000000501 INF: Z Motor: Warning: Actual position measuring time = 163 ms, longer than max expected time of 150 ms
17-03-17 22:46:25.928 -07 000000501 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2461 ms
17-03-17 22:46:25.928 -07 000000501 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:46:25.928 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:46:25.928 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:46:25.928 -07 000000475 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:46:25.928 -07 000000486 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:46:25.928 -07 000000547 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:46:25.928 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:46:25.928 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:46:25.928 -07 000000547 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:46:25.938 -07 000000547 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:46:25.938 -07 000000547 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:46:25.948 -07 000000547 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 22:46:25.948 -07 000000547 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-17 22:46:25.948 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:46:25.998 -07 000000501 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:46:26.198 -07 000000486 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:46:26.198 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:46:26.198 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:46:26.198 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 596199184, 0x0, 559484976) start.
17-03-17 22:46:26.238 -07 000000547 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:46:26.238 -07 000000458 INF: FPGA: Recv CAMSNAP
17-03-17 22:46:26.238 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 284 ms overall
17-03-17 22:46:26.328 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 596199184, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 22:46:26.328 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:46:26.328 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:46:26.328 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 22:46:26.338 -07 000000459 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:46:26.338 -07 000000429 INF: Autofocus start
17-03-17 22:46:26.338 -07 000000429 INF: MeasureProfile start
17-03-17 22:46:26.338 -07 000000478 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:46:26.348 -07 000000459 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:46:26.348 -07 000000459 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:46:26.348 -07 000000429 INF: MeasureProfile done
17-03-17 22:46:26.348 -07 000000429 INF: X=13  Z correction [um]=0.03858674
17-03-17 22:46:26.348 -07 000000429 INF: Autofocus finished
17-03-17 22:46:26.548 -07 000000512 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:46:26.548 -07 000000459 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:46:26.548 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.05712890625, Z-position -0.138600235554445. ----------
17-03-17 22:46:26.548 -07 000000610 INF: Cycle	67	Tile	6	Exposure Settings		A	459	G	221	T	221	C	459
17-03-17 22:46:26.558 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28795, sync = True, waitForSettling = True)
17-03-17 22:46:26.558 -07 000000610 INF: Z Motor: Moving to -0.131815 mm, started at -0.138600 mm, distance = 6.79 um
17-03-17 22:46:26.558 -07 000000610 INF: FPGA: Xmit ZDACW 28795\n [Z Motor]
17-03-17 22:46:26.558 -07 000000475 INF: FPGA: Recv ZDACW
17-03-17 22:46:26.568 -07 000000610 INF: FPGA: 'ZDACW 28795' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:26.568 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:46:26.568 -07 000000433 INF: FPGA: Recv ZDACR 28795
17-03-17 22:46:26.578 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:26.578 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:46:26.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:26.728 -07 000000547 INF: FPGA: Recv ZSGSRD 29812
17-03-17 22:46:26.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:46:26.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:26.738 -07 000000429 INF: FPGA: Recv ZSGSRD 29809
17-03-17 22:46:26.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:26.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:26.748 -07 000000547 INF: FPGA: Recv ZSGSRD 29804
17-03-17 22:46:26.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:26.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:26.758 -07 000000429 INF: FPGA: Recv ZSGSRD 29811
17-03-17 22:46:26.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:26.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:26.768 -07 000000547 INF: FPGA: Recv ZSGSRD 29807
17-03-17 22:46:26.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:26.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:26.778 -07 000000429 INF: FPGA: Recv ZSGSRD 29806
17-03-17 22:46:26.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:26.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:26.788 -07 000000627 INF: FPGA: Recv ZSGSRD 29813
17-03-17 22:46:26.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:26.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:26.798 -07 000000429 INF: FPGA: Recv ZSGSRD 29811
17-03-17 22:46:26.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:26.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:26.808 -07 000000478 INF: FPGA: Recv ZSGSRD 29814
17-03-17 22:46:26.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:26.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:26.818 -07 000000486 INF: FPGA: Recv ZSGSRD 29807
17-03-17 22:46:26.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:26.828 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:46:26.828 -07 000000433 INF: FPGA: Recv ZPIEZORD 25433
17-03-17 22:46:26.838 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:26.838 -07 000000610 INF: Z Motor: Piezo is near 34.3 V (nominally 0 to 100 V), expect near 43.9 V, since DAC is at 4.394 V. Piezo Error = -9.6 V.
17-03-17 22:46:26.838 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.8 um, Read 10 ADC samples: Avg = 29809 (-131.0 uncal um), Error = 0.8 uncal um, Median = 29810 (-131.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29804 (-131.0 uncal um), Max = 29814 (-131.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 22:46:26.838 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29809, posNoise = 5, negNoise = 5
17-03-17 22:46:26.838 -07 000000610 INF: Z Motor: After move to -0.131815, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:46:26.838 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 22:46:26.838 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:46:26.838 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:46:26.838 -07 000000551 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:46:26.838 -07 000000458 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:46:26.838 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:46:26.838 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:46:26.838 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:46:26.838 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:46:26.838 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:46:26.838 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 22:46:26.838 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:46:26.838 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:46:26.848 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 22:46:26.848 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:46:26.848 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 22:46:26.848 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:46:26.858 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 22:46:26.858 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 23 ms.
17-03-17 22:46:26.858 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 22:46:26.858 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 22:46:26.868 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 459 459 221 221 28972 150\n [Camera]
17-03-17 22:46:27.008 -07 000000458 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:46:27.008 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 66. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1047, R2=1076, Total=2123. Warn if over 250 bubbles per interval.
17-03-17 22:46:27.058 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:46:27.518 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 651
17-03-17 22:46:27.518 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 651
17-03-17 22:46:27.518 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:46:27.528 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 651
17-03-17 22:46:27.528 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 651
17-03-17 22:46:27.528 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:46:27.528 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:46:27.528 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-17 22:46:27.528 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:46:27.528 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 22:46:27.718 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28972 844
17-03-17 22:46:27.868 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP turning grn on 994
17-03-17 22:46:27.928 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 396 ms.
17-03-17 22:46:27.928 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 22:46:27.928 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:46:27.928 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 395 ms.
17-03-17 22:46:27.928 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 22:46:27.928 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:46:27.928 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:46:27.928 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 22:46:27.928 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:46:27.938 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-17 22:46:28.088 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1215
17-03-17 22:46:28.088 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1215
17-03-17 22:46:28.088 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:46:28.088 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1215
17-03-17 22:46:28.088 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1215
17-03-17 22:46:28.088 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:46:28.088 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:46:28.088 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 22:46:28.098 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:46:28.098 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-17 22:46:28.278 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP 1408
17-03-17 22:46:28.278 -07 000000478 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:46:28.278 -07 000000610 INF: FPGA: 'CAMDBLSNAP 459 459 221 221 28972 150' command took 2 ms to send, 1404 ms to get response, and 1415 ms overall
17-03-17 22:46:28.278 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 22:46:28.278 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.05712890625, Z-Position -0.131822691744887. ------
17-03-17 22:46:28.278 -07 000000433 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:46:28.278 -07 000000475 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.13843 mm
17-03-17 22:46:28.288 -07 000000475 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:46:28.288 -07 000000547 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-17 22:46:28.288 -07 000000547 INF: Y Motor: Moving to 64.8926 mm, started at 64.0571 mm, delta = 0.8355 mm
17-03-17 22:46:28.298 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:46:28.478 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 388 ms.
17-03-17 22:46:28.478 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 22:46:28.478 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:46:28.488 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 22:46:28.488 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 394 ms.
17-03-17 22:46:28.488 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 22:46:28.488 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:46:28.488 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:46:28.488 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 22:46:28.498 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 22:46:28.498 -07 000000429 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:46:28.498 -07 000000429 INF: FPGA: Recv YRDPOS 131189
17-03-17 22:46:28.498 -07 000000433 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 208 ms to get response, and 219 ms overall
17-03-17 22:46:28.498 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 198 ms to get response, and 215 ms overall
17-03-17 22:46:28.498 -07 000000547 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:46:28.498 -07 000000547 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:46:28.498 -07 000000547 INF: Y Motor: Moving 1337 steps-11
17-03-17 22:46:28.508 -07 000000433 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:46:28.508 -07 000000429 INF: Z Motor: Entering MoveAbsStepped (DAC = 30241, sync = True, waitForSettling = False)
17-03-17 22:46:28.508 -07 000000429 INF: Z Motor: Moving to -0.138434 mm, started at -0.131823 mm, distance = -6.61 um
17-03-17 22:46:28.518 -07 000000429 INF: FPGA: Xmit ZDACW 30241\n [Z Motor]
17-03-17 22:46:28.518 -07 000000459 INF: FPGA: Recv ZDACW
17-03-17 22:46:28.528 -07 000000547 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:46:28.528 -07 000000429 INF: FPGA: 'ZDACW 30241' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:46:28.538 -07 000000429 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:46:28.538 -07 000000459 INF: FPGA: Recv ZDACR 30241
17-03-17 22:46:28.548 -07 000000429 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:46:28.548 -07 000000429 INF: Z Motor: MoveAbsStepped took 39 ms (did NOT wait for settling yet))
17-03-17 22:46:28.708 -07 000000459 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:46:28.708 -07 000000433 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 193 ms to get response, and 203 ms overall
17-03-17 22:46:28.898 -07 000000433 INF: FPGA: Recv YMVTILE
17-03-17 22:46:28.898 -07 000000547 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 398 ms overall
17-03-17 22:46:28.938 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:46:28.938 -07 000000433 INF: FPGA: Recv YRDPOS 132872
17-03-17 22:46:28.948 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:46:28.948 -07 000000547 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:46:28.948 -07 000000547 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 22:46:28.948 -07 000000547 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.835 mm, average velocity = 2.099 mm/sec
17-03-17 22:46:29.898 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:46:29.898 -07 000000433 INF: FPGA: Recv YRDPOS 132872
17-03-17 22:46:29.908 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:29.908 -07 000000547 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:46:29.928 -07 000000547 INF: Y Motor: After move to 64.892609, error = -0.013702, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:46:29.928 -07 000000547 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:46:29.928 -07 000000547 INF: Y Motor: Moved to 64.8789 after 1644 ms (table move)
17-03-17 22:46:29.938 -07 000000475 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138434 mm (DAC = 30241)
17-03-17 22:46:29.938 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:29.938 -07 000000429 INF: FPGA: Recv ZSGSRD 30835
17-03-17 22:46:29.948 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:46:29.948 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:29.948 -07 000000433 INF: FPGA: Recv ZSGSRD 30840
17-03-17 22:46:29.958 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:29.958 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:29.958 -07 000000429 INF: FPGA: Recv ZSGSRD 30844
17-03-17 22:46:29.968 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:29.968 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:29.968 -07 000000459 INF: FPGA: Recv ZSGSRD 30845
17-03-17 22:46:29.978 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:29.978 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:29.978 -07 000000547 INF: FPGA: Recv ZSGSRD 30848
17-03-17 22:46:29.988 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:29.988 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:29.988 -07 000000547 INF: FPGA: Recv ZSGSRD 30845
17-03-17 22:46:29.998 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:46:29.998 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:29.998 -07 000000429 INF: FPGA: Recv ZSGSRD 30841
17-03-17 22:46:30.008 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:30.008 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:30.008 -07 000000547 INF: FPGA: Recv ZSGSRD 30834
17-03-17 22:46:30.018 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:30.018 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:30.018 -07 000000459 INF: FPGA: Recv ZSGSRD 30834
17-03-17 22:46:30.028 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:30.028 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:30.028 -07 000000433 INF: FPGA: Recv ZSGSRD 30838
17-03-17 22:46:30.038 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:30.038 -07 000000475 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:46:30.038 -07 000000429 INF: FPGA: Recv ZPIEZORD 26828
17-03-17 22:46:30.048 -07 000000475 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:30.048 -07 000000475 INF: Z Motor: Piezo is near 37.3 V (nominally 0 to 100 V), expect near 46.1 V, since DAC is at 4.614 V. Piezo Error = -8.8 V.
17-03-17 22:46:30.048 -07 000000475 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.4 um, Read 10 ADC samples: Avg = 30840 (-137.6 uncal um), Error = 0.8 uncal um, Median = 30840 (-137.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30834 (-137.6 uncal um), Max = 30848 (-137.7 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 22:46:30.048 -07 000000475 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30840, posNoise = 8, negNoise = 6
17-03-17 22:46:30.048 -07 000000475 INF: Z Motor: After move to -0.138434, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:46:30.048 -07 000000475 INF: Z Motor: Settle wait time = 1430 ms, measure time = 109 ms (allowed 150 ms), total time = 1539 ms
17-03-17 22:46:30.048 -07 000000475 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-17 22:46:30.098 -07 000000475 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1810 ms
17-03-17 22:46:30.098 -07 000000475 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:46:30.098 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:46:30.098 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:46:30.098 -07 000000547 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:46:30.098 -07 000000459 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:46:30.098 -07 000000475 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:46:30.098 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:46:30.098 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 22:46:30.098 -07 000000475 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:46:30.108 -07 000000475 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:46:30.108 -07 000000475 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:46:30.108 -07 000000475 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 22:46:30.108 -07 000000475 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 22:46:30.118 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:46:30.158 -07 000000429 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:46:30.358 -07 000000433 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:46:30.358 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:46:30.358 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:46:30.358 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1113297000, 0x0, 559484976) start.
17-03-17 22:46:30.398 -07 000000459 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:46:30.398 -07 000000547 INF: FPGA: Recv CAMSNAP
17-03-17 22:46:30.398 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 275 ms to get response, and 284 ms overall
17-03-17 22:46:30.488 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1113297000, 0x0, 559484976) end. Duration was 123 ms.
17-03-17 22:46:30.488 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:46:30.488 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:46:30.488 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 126 ms.
17-03-17 22:46:30.498 -07 000000433 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:46:30.498 -07 000000459 INF: Autofocus start
17-03-17 22:46:30.498 -07 000000459 INF: MeasureProfile start
17-03-17 22:46:30.498 -07 000000482 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:46:30.508 -07 000000433 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:46:30.508 -07 000000433 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:46:30.508 -07 000000459 INF: MeasureProfile done
17-03-17 22:46:30.508 -07 000000459 INF: X=0  Z correction [um]=-0.02394831
17-03-17 22:46:30.508 -07 000000459 INF: Autofocus finished
17-03-17 22:46:30.708 -07 000000547 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:46:30.708 -07 000000433 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:46:30.708 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87890625, Z-position -0.138446054463043. ----------
17-03-17 22:46:30.708 -07 000000610 INF: Cycle	67	Tile	7	Exposure Settings		A	459	G	221	T	221	C	459
17-03-17 22:46:30.718 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28748, sync = True, waitForSettling = True)
17-03-17 22:46:30.718 -07 000000610 INF: Z Motor: Moving to -0.131600 mm, started at -0.138446 mm, distance = 6.85 um
17-03-17 22:46:30.718 -07 000000610 INF: FPGA: Xmit ZDACW 28748\n [Z Motor]
17-03-17 22:46:30.718 -07 000000482 INF: FPGA: Recv ZDACW
17-03-17 22:46:30.728 -07 000000610 INF: FPGA: 'ZDACW 28748' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:30.728 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:46:30.728 -07 000000512 INF: FPGA: Recv ZDACR 28748
17-03-17 22:46:30.738 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:30.738 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:46:30.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:30.888 -07 000000547 INF: FPGA: Recv ZSGSRD 29776
17-03-17 22:46:30.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:46:30.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:30.898 -07 000000482 INF: FPGA: Recv ZSGSRD 29775
17-03-17 22:46:30.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:30.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:30.908 -07 000000486 INF: FPGA: Recv ZSGSRD 29776
17-03-17 22:46:30.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:30.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:30.918 -07 000000438 INF: FPGA: Recv ZSGSRD 29770
17-03-17 22:46:30.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:30.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:30.928 -07 000000475 INF: FPGA: Recv ZSGSRD 29783
17-03-17 22:46:30.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:30.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:30.938 -07 000000478 INF: FPGA: Recv ZSGSRD 29776
17-03-17 22:46:30.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:30.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:30.948 -07 000000547 INF: FPGA: Recv ZSGSRD 29767
17-03-17 22:46:30.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:30.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:30.958 -07 000000551 INF: FPGA: Recv ZSGSRD 29781
17-03-17 22:46:30.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:30.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:30.968 -07 000000501 INF: FPGA: Recv ZSGSRD 29771
17-03-17 22:46:30.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:30.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:30.978 -07 000000482 INF: FPGA: Recv ZSGSRD 29777
17-03-17 22:46:30.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:30.988 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:46:30.988 -07 000000486 INF: FPGA: Recv ZPIEZORD 25426
17-03-17 22:46:30.998 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:30.998 -07 000000610 INF: Z Motor: Piezo is near 34.3 V (nominally 0 to 100 V), expect near 43.9 V, since DAC is at 4.387 V. Piezo Error = -9.6 V.
17-03-17 22:46:30.998 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.6 um, Read 10 ADC samples: Avg = 29775 (-130.8 uncal um), Error = 0.8 uncal um, Median = 29776 (-130.8 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 29767 (-130.8 uncal um), Max = 29783 (-130.9 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 22:46:30.998 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29775, posNoise = 8, negNoise = 8
17-03-17 22:46:30.998 -07 000000610 INF: Z Motor: After move to -0.131600, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:46:30.998 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 22:46:30.998 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:46:30.998 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:46:30.998 -07 000000482 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:46:30.998 -07 000000547 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:46:30.998 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:46:30.998 -07 000000459 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:46:30.998 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:46:30.998 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:46:30.998 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:46:30.998 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:46:30.998 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 4 ms.
17-03-17 22:46:30.998 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:46:31.008 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 22:46:31.008 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:46:31.008 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 22:46:31.008 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:46:31.018 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 22:46:31.018 -07 000000459 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 17 ms.
17-03-17 22:46:31.018 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 12 ms.
17-03-17 22:46:31.018 -07 000000547 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 22:46:31.018 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 459 459 221 221 28925 150\n [Camera]
17-03-17 22:46:31.188 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 67, FrontChillerTemperature: 3.986717,
17-03-17 22:46:31.218 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:46:31.678 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 651
17-03-17 22:46:31.678 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 651
17-03-17 22:46:31.678 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:46:31.678 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:46:31.678 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 2235207384, 0x0, 391868352) start.
17-03-17 22:46:31.688 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 651
17-03-17 22:46:31.688 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 651
17-03-17 22:46:31.688 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:46:31.688 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:46:31.688 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2350877912, 0x0, 418435064) start.
17-03-17 22:46:31.868 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28925 844
17-03-17 22:46:32.008 -07 000000433 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:46:32.008 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 66. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1047, R2=1076, Total=2123. Warn if over 250 bubbles per interval.
17-03-17 22:46:32.018 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP turning grn on 994
17-03-17 22:46:32.078 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 2235207384, 0x0, 391868352) end. Duration was 396 ms.
17-03-17 22:46:32.078 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 22:46:32.078 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:46:32.088 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:46:32.088 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 22:46:32.088 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2350877912, 0x0, 418435064) end. Duration was 399 ms.
17-03-17 22:46:32.088 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 22:46:32.088 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:46:32.088 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:46:32.098 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-17 22:46:32.248 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1215
17-03-17 22:46:32.248 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1215
17-03-17 22:46:32.248 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:46:32.248 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1215
17-03-17 22:46:32.248 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1215
17-03-17 22:46:32.248 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:46:32.248 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 22:46:32.248 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:46:32.248 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:46:32.248 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 22:46:32.438 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP 1408
17-03-17 22:46:32.438 -07 000000429 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:46:32.438 -07 000000610 INF: FPGA: 'CAMDBLSNAP 459 459 221 221 28925 150' command took 2 ms to send, 1412 ms to get response, and 1415 ms overall
17-03-17 22:46:32.438 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 22:46:32.438 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.87890625, Z-Position -0.131604268532067. ------
17-03-17 22:46:32.438 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:46:32.438 -07 000000482 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.13820 mm
17-03-17 22:46:32.438 -07 000000482 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:46:32.448 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:46:32.448 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:46:32.448 -07 000000501 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:46:32.448 -07 000000576 INF: Z Motor: Entering MoveAbsStepped (DAC = 30191, sync = True, waitForSettling = False)
17-03-17 22:46:32.448 -07 000000576 INF: Z Motor: Moving to -0.138206 mm, started at -0.131604 mm, distance = -6.60 um
17-03-17 22:46:32.448 -07 000000547 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-17 22:46:32.448 -07 000000547 INF: Y Motor: Moving to 65.7226 mm, started at 64.8789 mm, delta = 0.8437 mm
17-03-17 22:46:32.458 -07 000000576 INF: FPGA: Xmit ZDACW 30191\n [Z Motor]
17-03-17 22:46:32.458 -07 000000433 INF: FPGA: Recv ZDACW
17-03-17 22:46:32.468 -07 000000576 INF: FPGA: 'ZDACW 30191' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 22:46:32.468 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:46:32.468 -07 000000459 INF: FPGA: Recv YRDPOS 132873
17-03-17 22:46:32.478 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 22:46:32.478 -07 000000576 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:46:32.478 -07 000000547 INF: Y Motor: Encoder = 132873 = motor step 103807.0 = 64.8794 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:46:32.478 -07 000000438 INF: FPGA: Recv ZDACR 30191
17-03-17 22:46:32.478 -07 000000547 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:46:32.478 -07 000000547 INF: Y Motor: Moving 1349 steps-28
17-03-17 22:46:32.488 -07 000000576 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:46:32.488 -07 000000576 INF: Z Motor: MoveAbsStepped took 37 ms (did NOT wait for settling yet))
17-03-17 22:46:32.488 -07 000000547 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:46:32.648 -07 000000459 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:46:32.648 -07 000000501 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 202 ms overall
17-03-17 22:46:32.648 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 403 ms.
17-03-17 22:46:32.648 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-17 22:46:32.648 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:46:32.648 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 404 ms.
17-03-17 22:46:32.648 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 22:46:32.648 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:46:32.658 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 22:46:32.658 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 22:46:32.658 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-17 22:46:32.668 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-17 22:46:32.858 -07 000000501 INF: FPGA: Recv YMVTILE
17-03-17 22:46:32.858 -07 000000547 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 383 ms overall
17-03-17 22:46:32.898 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:46:32.908 -07 000000459 INF: FPGA: Recv YRDPOS 134582
17-03-17 22:46:32.908 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 22:46:32.908 -07 000000547 INF: Y Motor: Encoder = 134582 = motor step 105142.2 = 65.7139 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:46:32.908 -07 000000547 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-17 22:46:32.908 -07 000000547 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 384 ms, distance = 0.844 mm, average velocity = 2.197 mm/sec
17-03-17 22:46:33.858 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:46:33.858 -07 000000486 INF: FPGA: Recv YRDPOS 134583
17-03-17 22:46:33.868 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:33.868 -07 000000547 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:46:33.888 -07 000000547 INF: Y Motor: After move to 65.722610, error = -0.008255, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:46:33.888 -07 000000547 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 22:46:33.888 -07 000000547 INF: Y Motor: Moved to 65.7144 after 1444 ms (table move)
17-03-17 22:46:33.898 -07 000000482 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138206 mm (DAC = 30191)
17-03-17 22:46:33.898 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:33.898 -07 000000547 INF: FPGA: Recv ZSGSRD 30801
17-03-17 22:46:33.908 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:33.908 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:33.908 -07 000000576 INF: FPGA: Recv ZSGSRD 30802
17-03-17 22:46:33.918 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:33.918 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:33.918 -07 000000459 INF: FPGA: Recv ZSGSRD 30814
17-03-17 22:46:33.928 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:33.928 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:33.928 -07 000000486 INF: FPGA: Recv ZSGSRD 30809
17-03-17 22:46:33.938 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:33.938 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:33.938 -07 000000459 INF: FPGA: Recv ZSGSRD 30800
17-03-17 22:46:33.948 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:33.948 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:33.948 -07 000000551 INF: FPGA: Recv ZSGSRD 30811
17-03-17 22:46:33.958 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:33.958 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:33.958 -07 000000576 INF: FPGA: Recv ZSGSRD 30798
17-03-17 22:46:33.968 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:33.968 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:33.968 -07 000000486 INF: FPGA: Recv ZSGSRD 30798
17-03-17 22:46:33.978 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:33.978 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:33.978 -07 000000551 INF: FPGA: Recv ZSGSRD 30802
17-03-17 22:46:33.988 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:33.988 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:33.988 -07 000000551 INF: FPGA: Recv ZSGSRD 30804
17-03-17 22:46:33.998 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:33.998 -07 000000482 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:46:33.998 -07 000000551 INF: FPGA: Recv ZPIEZORD 26864
17-03-17 22:46:34.008 -07 000000482 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:34.008 -07 000000482 INF: Z Motor: Piezo is near 37.4 V (nominally 0 to 100 V), expect near 46.1 V, since DAC is at 4.607 V. Piezo Error = -8.7 V.
17-03-17 22:46:34.008 -07 000000482 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.2 um, Read 10 ADC samples: Avg = 30804 (-137.4 uncal um), Error = 0.8 uncal um, Median = 30802 (-137.4 uncal um), StdDev = 6 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 30798 (-137.4 uncal um), Max = 30814 (-137.5 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 22:46:34.008 -07 000000482 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30804, posNoise = 10, negNoise = 6
17-03-17 22:46:34.008 -07 000000482 INF: Z Motor: After move to -0.138206, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:46:34.008 -07 000000482 INF: Z Motor: Settle wait time = 1447 ms, measure time = 110 ms (allowed 150 ms), total time = 1557 ms
17-03-17 22:46:34.008 -07 000000482 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-17 22:46:34.048 -07 000000482 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1601 ms
17-03-17 22:46:34.048 -07 000000482 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:46:34.048 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:46:34.048 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:46:34.048 -07 000000486 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:46:34.048 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:46:34.048 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:46:34.048 -07 000000551 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:46:34.048 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:46:34.048 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:46:34.058 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:46:34.058 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:46:34.058 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 22:46:34.058 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 22:46:34.068 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:46:34.108 -07 000000459 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:46:34.308 -07 000000576 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:46:34.308 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:46:34.318 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:46:34.318 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) start.
17-03-17 22:46:34.348 -07 000000551 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:46:34.348 -07 000000482 INF: FPGA: Recv CAMSNAP
17-03-17 22:46:34.348 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 285 ms overall
17-03-17 22:46:34.428 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 22:46:34.428 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:46:34.428 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:46:34.428 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 22:46:34.448 -07 000000551 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:46:34.448 -07 000000459 INF: Autofocus start
17-03-17 22:46:34.448 -07 000000459 INF: MeasureProfile start
17-03-17 22:46:34.448 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:46:34.458 -07 000000551 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:46:34.458 -07 000000551 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:46:34.468 -07 000000459 INF: MeasureProfile done
17-03-17 22:46:34.468 -07 000000459 INF: X=16  Z correction [um]=0.0530179
17-03-17 22:46:34.468 -07 000000459 INF: Autofocus finished
17-03-17 22:46:34.658 -07 000000547 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:46:34.658 -07 000000551 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 204 ms overall
17-03-17 22:46:34.668 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.71435546875, Z-position -0.13821478282594. ----------
17-03-17 22:46:34.668 -07 000000610 INF: Cycle	67	Tile	8	Exposure Settings		A	459	G	221	T	221	C	459
17-03-17 22:46:34.668 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28715, sync = True, waitForSettling = True)
17-03-17 22:46:34.668 -07 000000610 INF: Z Motor: Moving to -0.131449 mm, started at -0.138215 mm, distance = 6.77 um
17-03-17 22:46:34.668 -07 000000610 INF: FPGA: Xmit ZDACW 28715\n [Z Motor]
17-03-17 22:46:34.668 -07 000000486 INF: FPGA: Recv ZDACW
17-03-17 22:46:34.678 -07 000000610 INF: FPGA: 'ZDACW 28715' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 22:46:34.678 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:46:34.678 -07 000000482 INF: FPGA: Recv ZDACR 28715
17-03-17 22:46:34.688 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:34.688 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:46:34.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:34.838 -07 000000551 INF: FPGA: Recv ZSGSRD 29751
17-03-17 22:46:34.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:46:34.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:34.848 -07 000000547 INF: FPGA: Recv ZSGSRD 29757
17-03-17 22:46:34.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:34.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:34.858 -07 000000551 INF: FPGA: Recv ZSGSRD 29752
17-03-17 22:46:34.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:34.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:34.868 -07 000000547 INF: FPGA: Recv ZSGSRD 29750
17-03-17 22:46:34.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:34.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:34.878 -07 000000486 INF: FPGA: Recv ZSGSRD 29757
17-03-17 22:46:34.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:34.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:34.888 -07 000000547 INF: FPGA: Recv ZSGSRD 29752
17-03-17 22:46:34.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:34.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:34.898 -07 000000551 INF: FPGA: Recv ZSGSRD 29749
17-03-17 22:46:34.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:34.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:34.908 -07 000000482 INF: FPGA: Recv ZSGSRD 29745
17-03-17 22:46:34.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:34.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:34.918 -07 000000551 INF: FPGA: Recv ZSGSRD 29749
17-03-17 22:46:34.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:34.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:34.928 -07 000000486 INF: FPGA: Recv ZSGSRD 29756
17-03-17 22:46:34.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:34.938 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:46:34.938 -07 000000576 INF: FPGA: Recv ZPIEZORD 25459
17-03-17 22:46:34.948 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:46:34.948 -07 000000610 INF: Z Motor: Piezo is near 34.4 V (nominally 0 to 100 V), expect near 43.8 V, since DAC is at 4.382 V. Piezo Error = -9.4 V.
17-03-17 22:46:34.948 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.4 um, Read 10 ADC samples: Avg = 29752 (-130.7 uncal um), Error = 0.8 uncal um, Median = 29752 (-130.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29745 (-130.6 uncal um), Max = 29757 (-130.7 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 22:46:34.948 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29752, posNoise = 5, negNoise = 7
17-03-17 22:46:34.948 -07 000000610 INF: Z Motor: After move to -0.131449, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:46:34.948 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 22:46:34.948 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:46:34.948 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:46:34.948 -07 000000482 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:46:34.948 -07 000000459 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:46:34.948 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:46:34.948 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:46:34.948 -07 000000486 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:46:34.948 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:46:34.948 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:46:34.948 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:46:34.948 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:46:34.948 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:46:34.948 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:46:34.948 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:46:34.958 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:46:34.958 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:46:34.958 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 22:46:34.958 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 22:46:34.968 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 22:46:34.968 -07 000000486 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 22:46:34.968 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 459 459 221 221 28892 150\n [Camera]
17-03-17 22:46:35.168 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:46:35.628 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 651
17-03-17 22:46:35.628 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 651
17-03-17 22:46:35.628 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:46:35.628 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:46:35.628 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-17 22:46:35.628 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 651
17-03-17 22:46:35.628 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 651
17-03-17 22:46:35.628 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:46:35.628 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:46:35.628 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-17 22:46:35.818 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28892 844
17-03-17 22:46:35.968 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP turning grn on 994
17-03-17 22:46:36.008 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 22:46:36.008 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 22:46:36.008 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:46:36.008 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 22:46:36.008 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 22:46:36.008 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:46:36.008 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:46:36.008 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:46:36.008 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 22:46:36.018 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 22:46:36.188 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1215
17-03-17 22:46:36.188 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1215
17-03-17 22:46:36.188 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:46:36.188 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:46:36.188 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) start.
17-03-17 22:46:36.198 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1215
17-03-17 22:46:36.198 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1215
17-03-17 22:46:36.198 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:46:36.198 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:46:36.198 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) start.
17-03-17 22:46:36.378 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP 1408
17-03-17 22:46:36.378 -07 000000547 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:46:36.378 -07 000000610 INF: FPGA: 'CAMDBLSNAP 459 459 221 221 28892 150' command took 5 ms to send, 1407 ms to get response, and 1414 ms overall
17-03-17 22:46:36.378 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 22:46:36.378 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.71435546875, Z-Position -0.131456511652807. ------
17-03-17 22:46:36.388 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:46:36.388 -07 000000547 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.13780 mm
17-03-17 22:46:36.388 -07 000000547 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:46:36.388 -07 000000512 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-17 22:46:36.388 -07 000000512 INF: Y Motor: Moving to 66.5526 mm, started at 65.7144 mm, delta = 0.8382 mm
17-03-17 22:46:36.388 -07 000000551 INF: Z Motor: Entering MoveAbsStepped (DAC = 30102, sync = True, waitForSettling = False)
17-03-17 22:46:36.388 -07 000000551 INF: Z Motor: Moving to -0.137798 mm, started at -0.131457 mm, distance = -6.34 um
17-03-17 22:46:36.398 -07 000000551 INF: FPGA: Xmit ZDACW 30102\n [Z Motor]
17-03-17 22:46:36.398 -07 000000482 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:46:36.398 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:46:36.398 -07 000000459 INF: FPGA: Recv ZDACW
17-03-17 22:46:36.408 -07 000000551 INF: FPGA: 'ZDACW 30102' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 22:46:36.408 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:46:36.408 -07 000000627 INF: FPGA: Recv YRDPOS 134583
17-03-17 22:46:36.418 -07 000000561 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:46:36.418 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-17 22:46:36.418 -07 000000512 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:46:36.418 -07 000000512 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:46:36.418 -07 000000512 INF: Y Motor: Moving 1341 steps-18
17-03-17 22:46:36.428 -07 000000551 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:46:36.428 -07 000000433 INF: FPGA: Recv ZDACR 30102
17-03-17 22:46:36.438 -07 000000551 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:46:36.438 -07 000000551 INF: Z Motor: MoveAbsStepped took 42 ms (did NOT wait for settling yet))
17-03-17 22:46:36.438 -07 000000512 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:46:36.548 -07 000000482 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 67, FrontChillerTemperature: 3.979922,
17-03-17 22:46:36.588 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) end. Duration was 397 ms.
17-03-17 22:46:36.588 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 22:46:36.588 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:46:36.598 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) end. Duration was 399 ms.
17-03-17 22:46:36.598 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 22:46:36.598 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:46:36.598 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 22:46:36.598 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-17 22:46:36.598 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 22:46:36.608 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-17 22:46:36.618 -07 000000576 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:46:36.618 -07 000000561 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 221 ms overall
17-03-17 22:46:36.808 -07 000000627 INF: FPGA: Recv YMVTILE
17-03-17 22:46:36.808 -07 000000512 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 22:46:36.848 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:46:36.858 -07 000000482 INF: FPGA: Recv YRDPOS 136272
17-03-17 22:46:36.858 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 22:46:36.858 -07 000000512 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:46:36.858 -07 000000512 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 22:46:36.858 -07 000000512 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.838 mm, average velocity = 2.106 mm/sec
17-03-17 22:46:37.008 -07 000000433 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:46:37.008 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 66. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1047, R2=1076, Total=2123. Warn if over 250 bubbles per interval.
17-03-17 22:46:37.808 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:46:37.808 -07 000000627 INF: FPGA: Recv YRDPOS 136273
17-03-17 22:46:37.818 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:37.818 -07 000000512 INF: Y Motor: Encoder = 136273 = motor step 106463.3 = 66.5396 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:46:37.838 -07 000000512 INF: Y Motor: After move to 66.552605, error = -0.013054, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:46:37.838 -07 000000512 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 22:46:37.838 -07 000000512 INF: Y Motor: Moved to 66.5396 after 1449 ms (table move)
17-03-17 22:46:37.848 -07 000000547 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137798 mm (DAC = 30102)
17-03-17 22:46:37.848 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:37.848 -07 000000512 INF: FPGA: Recv ZSGSRD 30745
17-03-17 22:46:37.858 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:37.858 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:37.858 -07 000000512 INF: FPGA: Recv ZSGSRD 30740
17-03-17 22:46:37.868 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:37.868 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:37.868 -07 000000512 INF: FPGA: Recv ZSGSRD 30745
17-03-17 22:46:37.878 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:37.878 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:37.878 -07 000000512 INF: FPGA: Recv ZSGSRD 30742
17-03-17 22:46:37.888 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:37.888 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:37.888 -07 000000512 INF: FPGA: Recv ZSGSRD 30740
17-03-17 22:46:37.898 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:37.898 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:37.898 -07 000000512 INF: FPGA: Recv ZSGSRD 30743
17-03-17 22:46:37.908 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:37.908 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:37.908 -07 000000551 INF: FPGA: Recv ZSGSRD 30736
17-03-17 22:46:37.918 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:37.918 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:37.918 -07 000000551 INF: FPGA: Recv ZSGSRD 30741
17-03-17 22:46:37.928 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:37.928 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:37.928 -07 000000512 INF: FPGA: Recv ZSGSRD 30736
17-03-17 22:46:37.938 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:37.938 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:37.938 -07 000000576 INF: FPGA: Recv ZSGSRD 30737
17-03-17 22:46:37.948 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:37.948 -07 000000547 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:46:37.948 -07 000000627 INF: FPGA: Recv ZPIEZORD 26724
17-03-17 22:46:37.958 -07 000000547 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:37.958 -07 000000547 INF: Z Motor: Piezo is near 37.1 V (nominally 0 to 100 V), expect near 45.9 V, since DAC is at 4.593 V. Piezo Error = -8.8 V.
17-03-17 22:46:37.958 -07 000000547 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.8 um, Read 10 ADC samples: Avg = 30740 (-137.0 uncal um), Error = 0.8 uncal um, Median = 30740 (-137.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 30736 (-137.0 uncal um), Max = 30745 (-137.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 22:46:37.958 -07 000000547 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30740, posNoise = 5, negNoise = 4
17-03-17 22:46:37.958 -07 000000547 INF: Z Motor: After move to -0.137798, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:46:37.958 -07 000000547 INF: Z Motor: Settle wait time = 1452 ms, measure time = 112 ms (allowed 150 ms), total time = 1564 ms
17-03-17 22:46:37.958 -07 000000547 INF: Z Motor: Waiting extra 38 ms after reading position to reach expected total of 150 ms
17-03-17 22:46:37.998 -07 000000547 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1605 ms
17-03-17 22:46:37.998 -07 000000547 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:46:37.998 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:46:37.998 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:46:37.998 -07 000000433 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:46:37.998 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:46:37.998 -07 000000547 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:46:37.998 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:46:37.998 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:46:37.998 -07 000000547 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:46:38.008 -07 000000547 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:46:38.008 -07 000000547 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:46:38.018 -07 000000547 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 22:46:38.018 -07 000000547 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 22:46:38.018 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:46:38.068 -07 000000512 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:46:38.268 -07 000000512 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:46:38.268 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:46:38.268 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:46:38.268 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1201016592, 0x0, 559484976) start.
17-03-17 22:46:38.308 -07 000000512 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:46:38.308 -07 000000433 INF: FPGA: Recv CAMSNAP
17-03-17 22:46:38.308 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 284 ms overall
17-03-17 22:46:38.378 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1201016592, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 22:46:38.378 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:46:38.378 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 22:46:38.378 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 116 ms.
17-03-17 22:46:38.408 -07 000000459 INF: Autofocus start
17-03-17 22:46:38.408 -07 000000459 INF: MeasureProfile start
17-03-17 22:46:38.408 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:46:38.408 -07 000000547 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:46:38.418 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:46:38.418 -07 000000512 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:46:38.418 -07 000000459 INF: MeasureProfile done
17-03-17 22:46:38.418 -07 000000459 INF: X=0  Z correction [um]=-0.02394831
17-03-17 22:46:38.418 -07 000000459 INF: Autofocus finished
17-03-17 22:46:38.618 -07 000000459 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:46:38.618 -07 000000512 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:46:38.618 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.53955078125, Z-position -0.137803633248867. ----------
17-03-17 22:46:38.618 -07 000000610 INF: Cycle	67	Tile	9	Exposure Settings		A	459	G	221	T	221	C	459
17-03-17 22:46:38.628 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28609, sync = True, waitForSettling = True)
17-03-17 22:46:38.628 -07 000000610 INF: Z Motor: Moving to -0.130964 mm, started at -0.137804 mm, distance = 6.84 um
17-03-17 22:46:38.628 -07 000000610 INF: FPGA: Xmit ZDACW 28609\n [Z Motor]
17-03-17 22:46:38.628 -07 000000512 INF: FPGA: Recv ZDACW
17-03-17 22:46:38.638 -07 000000610 INF: FPGA: 'ZDACW 28609' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:38.638 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:46:38.638 -07 000000627 INF: FPGA: Recv ZDACR 28609
17-03-17 22:46:38.648 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:38.648 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:46:38.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:38.798 -07 000000433 INF: FPGA: Recv ZSGSRD 29678
17-03-17 22:46:38.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:46:38.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:38.808 -07 000000576 INF: FPGA: Recv ZSGSRD 29684
17-03-17 22:46:38.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:38.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:38.818 -07 000000512 INF: FPGA: Recv ZSGSRD 29678
17-03-17 22:46:38.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:38.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:38.828 -07 000000547 INF: FPGA: Recv ZSGSRD 29678
17-03-17 22:46:38.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:46:38.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:38.838 -07 000000512 INF: FPGA: Recv ZSGSRD 29676
17-03-17 22:46:38.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:38.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:38.848 -07 000000547 INF: FPGA: Recv ZSGSRD 29677
17-03-17 22:46:38.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:38.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:38.858 -07 000000576 INF: FPGA: Recv ZSGSRD 29675
17-03-17 22:46:38.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:38.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:38.868 -07 000000547 INF: FPGA: Recv ZSGSRD 29673
17-03-17 22:46:38.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:38.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:38.878 -07 000000627 INF: FPGA: Recv ZSGSRD 29681
17-03-17 22:46:38.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:38.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:38.888 -07 000000459 INF: FPGA: Recv ZSGSRD 29679
17-03-17 22:46:38.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:38.898 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:46:38.898 -07 000000627 INF: FPGA: Recv ZPIEZORD 25333
17-03-17 22:46:38.908 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:38.908 -07 000000610 INF: Z Motor: Piezo is near 34.1 V (nominally 0 to 100 V), expect near 43.7 V, since DAC is at 4.365 V. Piezo Error = -9.5 V.
17-03-17 22:46:38.908 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.0 um, Read 10 ADC samples: Avg = 29678 (-130.2 uncal um), Error = 0.8 uncal um, Median = 29678 (-130.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29673 (-130.2 uncal um), Max = 29684 (-130.2 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 22:46:38.908 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29678, posNoise = 6, negNoise = 5
17-03-17 22:46:38.908 -07 000000610 INF: Z Motor: After move to -0.130964, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:46:38.908 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 22:46:38.908 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:46:38.908 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:46:38.908 -07 000000547 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:46:38.908 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:46:38.908 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:46:38.908 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:46:38.908 -07 000000433 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:46:38.908 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:46:38.908 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:46:38.908 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:46:38.908 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:46:38.908 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:46:38.918 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:46:38.918 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:46:38.918 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:46:38.918 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:46:38.918 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 22:46:38.918 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 22:46:38.928 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 22:46:38.928 -07 000000433 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 22:46:38.928 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 459 459 221 221 28786 150\n [Camera]
17-03-17 22:46:39.128 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:46:39.588 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 651
17-03-17 22:46:39.588 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 651
17-03-17 22:46:39.588 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:46:39.588 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:46:39.588 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-17 22:46:39.588 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 651
17-03-17 22:46:39.588 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 651
17-03-17 22:46:39.588 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:46:39.588 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:46:39.588 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) start.
17-03-17 22:46:39.778 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28786 844
17-03-17 22:46:39.928 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning grn on 994
17-03-17 22:46:39.968 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 22:46:39.968 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 22:46:39.968 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:46:39.968 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 22:46:39.968 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 22:46:39.968 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:46:39.968 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 22:46:39.968 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 22:46:39.968 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:46:39.978 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 22:46:40.148 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1215
17-03-17 22:46:40.148 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1215
17-03-17 22:46:40.148 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:46:40.148 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:46:40.148 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2620985504, 0x0, 391868352) start.
17-03-17 22:46:40.158 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1215
17-03-17 22:46:40.158 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1215
17-03-17 22:46:40.158 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:46:40.158 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:46:40.158 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) start.
17-03-17 22:46:40.338 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP 1408
17-03-17 22:46:40.338 -07 000000547 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:46:40.338 -07 000000610 INF: FPGA: 'CAMDBLSNAP 459 459 221 221 28786 150' command took 2 ms to send, 1409 ms to get response, and 1415 ms overall
17-03-17 22:46:40.348 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 22:46:40.348 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.53955078125, Z-Position -0.130981119954317. ------
17-03-17 22:46:40.348 -07 000000459 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:46:40.348 -07 000000547 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.13774 mm
17-03-17 22:46:40.348 -07 000000547 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:46:40.348 -07 000000627 INF: Z Motor: Entering MoveAbsStepped (DAC = 30089, sync = True, waitForSettling = False)
17-03-17 22:46:40.348 -07 000000627 INF: Z Motor: Moving to -0.137739 mm, started at -0.130981 mm, distance = -6.76 um
17-03-17 22:46:40.348 -07 000000501 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-17 22:46:40.348 -07 000000501 INF: Y Motor: Moving to 67.3826 mm, started at 66.5396 mm, delta = 0.8431 mm
17-03-17 22:46:40.358 -07 000000429 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:46:40.358 -07 000000459 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:46:40.358 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:46:40.358 -07 000000433 INF: FPGA: Recv YRDPOS 136273
17-03-17 22:46:40.368 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:40.368 -07 000000501 INF: Y Motor: Encoder = 136273 = motor step 106463.3 = 66.5396 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:46:40.368 -07 000000459 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:46:40.368 -07 000000501 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:46:40.368 -07 000000501 INF: Y Motor: Moving 1349 steps-28
17-03-17 22:46:40.378 -07 000000627 INF: FPGA: Xmit ZDACW 30089\n [Z Motor]
17-03-17 22:46:40.378 -07 000000429 INF: FPGA: Recv ZDACW
17-03-17 22:46:40.388 -07 000000627 INF: FPGA: 'ZDACW 30089' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-17 22:46:40.388 -07 000000501 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:46:40.398 -07 000000627 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:46:40.398 -07 000000429 INF: FPGA: Recv ZDACR 30089
17-03-17 22:46:40.408 -07 000000627 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:46:40.408 -07 000000627 INF: Z Motor: MoveAbsStepped took 50 ms (did NOT wait for settling yet))
17-03-17 22:46:40.548 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2620985504, 0x0, 391868352) end. Duration was 399 ms.
17-03-17 22:46:40.548 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 22:46:40.548 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:46:40.558 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) end. Duration was 397 ms.
17-03-17 22:46:40.558 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 22:46:40.558 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:46:40.558 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:46:40.558 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 9 ms.
17-03-17 22:46:40.558 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-17 22:46:40.568 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-17 22:46:40.568 -07 000000438 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:46:40.568 -07 000000459 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 212 ms overall
17-03-17 22:46:40.758 -07 000000433 INF: FPGA: Recv YMVTILE
17-03-17 22:46:40.758 -07 000000501 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 22:46:40.798 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:46:40.808 -07 000000512 INF: FPGA: Recv YRDPOS 137978
17-03-17 22:46:40.808 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 22:46:40.808 -07 000000501 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:46:40.808 -07 000000501 INF: Y Motor: Position error before settling (table move) = -22 encoder counts (-0.011 mm)
17-03-17 22:46:40.808 -07 000000501 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.843 mm, average velocity = 2.118 mm/sec
17-03-17 22:46:41.758 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:46:41.758 -07 000000429 INF: FPGA: Recv YRDPOS 137978
17-03-17 22:46:41.768 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:46:41.768 -07 000000501 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:46:41.788 -07 000000501 INF: Y Motor: After move to 67.382607, error = -0.010536, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:46:41.788 -07 000000501 INF: Y Motor: Position error after settling (table move) = -22 encoder counts (-0.011 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:46:41.788 -07 000000501 INF: Y Motor: Moved to 67.3721 after 1436 ms (table move)
17-03-17 22:46:41.788 -07 000000547 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137739 mm (DAC = 30089)
17-03-17 22:46:41.788 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:41.798 -07 000000512 INF: FPGA: Recv ZSGSRD 30735
17-03-17 22:46:41.798 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-17 22:46:41.798 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:41.798 -07 000000512 INF: FPGA: Recv ZSGSRD 30730
17-03-17 22:46:41.808 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:46:41.808 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:41.808 -07 000000512 INF: FPGA: Recv ZSGSRD 30729
17-03-17 22:46:41.818 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:41.818 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:41.818 -07 000000512 INF: FPGA: Recv ZSGSRD 30734
17-03-17 22:46:41.828 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:41.828 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:41.828 -07 000000618 INF: FPGA: Recv ZSGSRD 30737
17-03-17 22:46:41.838 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:41.838 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:41.838 -07 000000618 INF: FPGA: Recv ZSGSRD 30735
17-03-17 22:46:41.848 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:41.848 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:41.848 -07 000000512 INF: FPGA: Recv ZSGSRD 30730
17-03-17 22:46:41.858 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:41.858 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:41.858 -07 000000618 INF: FPGA: Recv ZSGSRD 30728
17-03-17 22:46:41.868 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:41.868 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:41.868 -07 000000512 INF: FPGA: Recv ZSGSRD 30727
17-03-17 22:46:41.878 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:41.878 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:41.878 -07 000000512 INF: FPGA: Recv ZSGSRD 30727
17-03-17 22:46:41.888 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:41.888 -07 000000547 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:46:41.888 -07 000000618 INF: FPGA: Recv ZPIEZORD 26730
17-03-17 22:46:41.898 -07 000000547 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:41.898 -07 000000547 INF: Z Motor: Piezo is near 37.1 V (nominally 0 to 100 V), expect near 45.9 V, since DAC is at 4.591 V. Piezo Error = -8.8 V.
17-03-17 22:46:41.898 -07 000000547 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.7 um, Read 10 ADC samples: Avg = 30731 (-136.9 uncal um), Error = 0.8 uncal um, Median = 30730 (-136.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 30727 (-136.9 uncal um), Max = 30737 (-137.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 22:46:41.898 -07 000000547 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30731, posNoise = 6, negNoise = 4
17-03-17 22:46:41.898 -07 000000547 INF: Z Motor: After move to -0.137739, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:46:41.898 -07 000000547 INF: Z Motor: Settle wait time = 1439 ms, measure time = 102 ms (allowed 150 ms), total time = 1541 ms
17-03-17 22:46:41.898 -07 000000547 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 22:46:41.918 -07 000000433 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 67, FrontChillerTemperature: 3.974486,
17-03-17 22:46:41.948 -07 000000547 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1593 ms
17-03-17 22:46:41.948 -07 000000547 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:46:41.948 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:46:41.948 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:46:41.948 -07 000000459 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:46:41.948 -07 000000627 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:46:41.948 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:46:41.948 -07 000000486 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:46:41.948 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:46:41.948 -07 000000627 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:46:41.958 -07 000000627 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:46:41.958 -07 000000627 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:46:41.968 -07 000000627 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 22:46:41.968 -07 000000627 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-17 22:46:41.968 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:46:42.008 -07 000000429 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:46:42.008 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 66. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1047, R2=1076, Total=2123. Warn if over 250 bubbles per interval.
17-03-17 22:46:42.018 -07 000000486 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:46:42.208 -07 000000475 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:46:42.208 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:46:42.218 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:46:42.218 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2403175240, 0x0, 559484976) start.
17-03-17 22:46:42.248 -07 000000459 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:46:42.248 -07 000000501 INF: FPGA: Recv CAMSNAP
17-03-17 22:46:42.258 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 284 ms overall
17-03-17 22:46:42.328 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2403175240, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 22:46:42.328 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:46:42.328 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 22:46:42.328 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 22:46:42.358 -07 000000547 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:46:42.358 -07 000000618 INF: Autofocus start
17-03-17 22:46:42.358 -07 000000618 INF: MeasureProfile start
17-03-17 22:46:42.358 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:46:42.368 -07 000000547 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:46:42.368 -07 000000547 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:46:42.368 -07 000000618 INF: MeasureProfile done
17-03-17 22:46:42.368 -07 000000618 INF: X=16  Z correction [um]=0.0530179
17-03-17 22:46:42.368 -07 000000618 INF: Autofocus finished
17-03-17 22:46:42.568 -07 000000475 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:46:42.568 -07 000000547 INF: FPGA: 'FOCMRRIMG' command took 1 ms to send, 194 ms to get response, and 204 ms overall
17-03-17 22:46:42.568 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.3720703125, Z-position -0.137745815339591. ----------
17-03-17 22:46:42.568 -07 000000610 INF: Cycle	67	Tile	10	Exposure Settings		A	459	G	221	T	221	C	459
17-03-17 22:46:42.578 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28614, sync = True, waitForSettling = True)
17-03-17 22:46:42.578 -07 000000610 INF: Z Motor: Moving to -0.130986 mm, started at -0.137746 mm, distance = 6.76 um
17-03-17 22:46:42.578 -07 000000610 INF: FPGA: Xmit ZDACW 28614\n [Z Motor]
17-03-17 22:46:42.578 -07 000000459 INF: FPGA: Recv ZDACW
17-03-17 22:46:42.588 -07 000000610 INF: FPGA: 'ZDACW 28614' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:46:42.588 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:46:42.588 -07 000000627 INF: FPGA: Recv ZDACR 28614
17-03-17 22:46:42.598 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:42.598 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:46:42.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:42.748 -07 000000618 INF: FPGA: Recv ZSGSRD 29677
17-03-17 22:46:42.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:46:42.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:42.758 -07 000000486 INF: FPGA: Recv ZSGSRD 29682
17-03-17 22:46:42.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:42.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:42.768 -07 000000576 INF: FPGA: Recv ZSGSRD 29682
17-03-17 22:46:42.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:42.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:42.778 -07 000000618 INF: FPGA: Recv ZSGSRD 29682
17-03-17 22:46:42.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:42.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:42.788 -07 000000459 INF: FPGA: Recv ZSGSRD 29675
17-03-17 22:46:42.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:42.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:42.798 -07 000000627 INF: FPGA: Recv ZSGSRD 29684
17-03-17 22:46:42.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:42.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:42.808 -07 000000512 INF: FPGA: Recv ZSGSRD 29686
17-03-17 22:46:42.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:42.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:42.818 -07 000000618 INF: FPGA: Recv ZSGSRD 29682
17-03-17 22:46:42.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:42.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:42.828 -07 000000512 INF: FPGA: Recv ZSGSRD 29679
17-03-17 22:46:42.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:42.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:42.838 -07 000000627 INF: FPGA: Recv ZSGSRD 29677
17-03-17 22:46:42.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:42.848 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:46:42.848 -07 000000433 INF: FPGA: Recv ZPIEZORD 25350
17-03-17 22:46:42.858 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:42.858 -07 000000610 INF: Z Motor: Piezo is near 34.2 V (nominally 0 to 100 V), expect near 43.7 V, since DAC is at 4.366 V. Piezo Error = -9.5 V.
17-03-17 22:46:42.858 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.0 um, Read 10 ADC samples: Avg = 29681 (-130.2 uncal um), Error = 0.8 uncal um, Median = 29682 (-130.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29675 (-130.2 uncal um), Max = 29686 (-130.3 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 22:46:42.858 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29681, posNoise = 5, negNoise = 6
17-03-17 22:46:42.858 -07 000000610 INF: Z Motor: After move to -0.130986, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:46:42.858 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 22:46:42.858 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:46:42.858 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:46:42.858 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:46:42.858 -07 000000547 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:46:42.858 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:46:42.858 -07 000000433 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:46:42.858 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:46:42.858 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:46:42.858 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 22:46:42.858 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:46:42.858 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:46:42.858 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:46:42.858 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 22:46:42.858 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:46:42.868 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 22:46:42.868 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:46:42.868 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 22:46:42.868 -07 000000433 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 22:46:42.878 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 12 ms.
17-03-17 22:46:42.878 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms.
17-03-17 22:46:42.878 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 459 459 221 221 28790 150\n [Camera]
17-03-17 22:46:43.078 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:46:43.538 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 651
17-03-17 22:46:43.538 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 651
17-03-17 22:46:43.538 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:46:43.538 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:46:43.538 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2719780968, 0x0, 391868352) start.
17-03-17 22:46:43.538 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 651
17-03-17 22:46:43.538 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 651
17-03-17 22:46:43.538 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:46:43.548 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:46:43.548 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 2755203232, 0x0, 418435064) start.
17-03-17 22:46:43.728 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28790 844
17-03-17 22:46:43.878 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP turning grn on 994
17-03-17 22:46:43.918 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2719780968, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 22:46:43.918 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 22:46:43.918 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:46:43.918 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 2755203232, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 22:46:43.918 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 22:46:43.918 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:46:43.918 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:46:43.928 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 22:46:43.928 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:46:43.928 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 22:46:44.098 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1215
17-03-17 22:46:44.108 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1215
17-03-17 22:46:44.108 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:46:44.238 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1215
17-03-17 22:46:44.238 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1215
17-03-17 22:46:44.238 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:46:44.238 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:46:44.238 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 2818576432, 0x0, 391868352) start.
17-03-17 22:46:44.248 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:46:44.248 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) start.
17-03-17 22:46:44.298 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP 1409
17-03-17 22:46:44.298 -07 000000618 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:46:44.298 -07 000000610 INF: FPGA: 'CAMDBLSNAP 459 459 221 221 28790 150' command took 2 ms to send, 1414 ms to get response, and 1418 ms overall
17-03-17 22:46:44.298 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 22:46:44.298 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.3720703125, Z-Position -0.131000392590742. ------
17-03-17 22:46:44.298 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:46:44.298 -07 000000618 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.13752 mm
17-03-17 22:46:44.308 -07 000000618 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:46:44.308 -07 000000547 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-17 22:46:44.308 -07 000000547 INF: Y Motor: Moving to 68.2126 mm, started at 67.3721 mm, delta = 0.8405 mm
17-03-17 22:46:44.308 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:46:44.308 -07 000000459 INF: Z Motor: Entering MoveAbsStepped (DAC = 30041, sync = True, waitForSettling = False)
17-03-17 22:46:44.308 -07 000000459 INF: Z Motor: Moving to -0.137519 mm, started at -0.131000 mm, distance = -6.52 um
17-03-17 22:46:44.318 -07 000000459 INF: FPGA: Xmit ZDACW 30041\n [Z Motor]
17-03-17 22:46:44.638 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) end. Duration was 395 ms.
17-03-17 22:46:44.638 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 22:46:44.638 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:46:44.638 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 2818576432, 0x0, 391868352) end. Duration was 401 ms.
17-03-17 22:46:44.638 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 22:46:44.638 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:46:44.648 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:46:44.648 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:46:44.648 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 541 ms.
17-03-17 22:46:44.648 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-17 22:46:44.658 -07 000000433 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:46:44.658 -07 000000433 INF: FPGA: Recv YRDPOS 137979
17-03-17 22:46:44.658 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 354 ms to get response, and 354 ms overall
17-03-17 22:46:44.658 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 344 ms to get response, and 351 ms overall
17-03-17 22:46:44.658 -07 000000433 INF: FPGA: Recv ZDACW
17-03-17 22:46:44.658 -07 000000459 INF: FPGA: 'ZDACW 30041' command took 0 ms to send, 334 ms to get response, and 351 ms overall
17-03-17 22:46:44.658 -07 000000459 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:46:44.658 -07 000000547 INF: Y Motor: Encoder = 137979 = motor step 107796.1 = 67.3726 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:46:44.658 -07 000000433 INF: FPGA: Recv ZDACR 30041
17-03-17 22:46:44.658 -07 000000547 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:46:44.658 -07 000000547 INF: Y Motor: Moving 1344 steps-22
17-03-17 22:46:44.668 -07 000000459 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 22:46:44.668 -07 000000459 INF: Z Motor: MoveAbsStepped took 356 ms (did NOT wait for settling yet))
17-03-17 22:46:44.668 -07 000000512 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:46:44.678 -07 000000547 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:46:44.868 -07 000000433 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:46:44.868 -07 000000512 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 207 ms overall
17-03-17 22:46:45.048 -07 000000459 INF: FPGA: Recv YMVTILE
17-03-17 22:46:45.048 -07 000000547 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 389 ms overall
17-03-17 22:46:45.088 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:46:45.098 -07 000000458 INF: FPGA: Recv YRDPOS 139685
17-03-17 22:46:45.098 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 5 ms overall
17-03-17 22:46:45.098 -07 000000547 INF: Y Motor: Encoder = 139685 = motor step 109128.9 = 68.2056 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:46:45.098 -07 000000547 INF: Y Motor: Position error before settling (table move) = -14 encoder counts (-0.007 mm)
17-03-17 22:46:45.098 -07 000000547 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 389 ms, distance = 0.841 mm, average velocity = 2.161 mm/sec
17-03-17 22:46:46.048 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:46:46.048 -07 000000482 INF: FPGA: Recv YRDPOS 139685
17-03-17 22:46:46.058 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:46:46.058 -07 000000547 INF: Y Motor: Encoder = 139685 = motor step 109128.9 = 68.2056 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:46:46.078 -07 000000547 INF: Y Motor: After move to 68.212608, error = -0.007042, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:46:46.078 -07 000000547 INF: Y Motor: Position error after settling (table move) = -14 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:46:46.078 -07 000000547 INF: Y Motor: Moved to 68.2056 after 1770 ms (table move)
17-03-17 22:46:46.078 -07 000000618 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137519 mm (DAC = 30041)
17-03-17 22:46:46.078 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:46.088 -07 000000512 INF: FPGA: Recv ZSGSRD 30694
17-03-17 22:46:46.088 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 3 ms to get response, and 6 ms overall
17-03-17 22:46:46.088 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:46.088 -07 000000458 INF: FPGA: Recv ZSGSRD 30699
17-03-17 22:46:46.098 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:46:46.098 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:46.098 -07 000000512 INF: FPGA: Recv ZSGSRD 30697
17-03-17 22:46:46.108 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:46.108 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:46.108 -07 000000482 INF: FPGA: Recv ZSGSRD 30703
17-03-17 22:46:46.118 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:46.118 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:46.118 -07 000000459 INF: FPGA: Recv ZSGSRD 30704
17-03-17 22:46:46.128 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:46.128 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:46.128 -07 000000482 INF: FPGA: Recv ZSGSRD 30691
17-03-17 22:46:46.138 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:46.138 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:46.138 -07 000000433 INF: FPGA: Recv ZSGSRD 30697
17-03-17 22:46:46.148 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:46.148 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:46.148 -07 000000458 INF: FPGA: Recv ZSGSRD 30691
17-03-17 22:46:46.158 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:46.158 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:46.158 -07 000000627 INF: FPGA: Recv ZSGSRD 30698
17-03-17 22:46:46.168 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:46.168 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:46.168 -07 000000482 INF: FPGA: Recv ZSGSRD 30696
17-03-17 22:46:46.178 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:46.178 -07 000000618 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:46:46.178 -07 000000512 INF: FPGA: Recv ZPIEZORD 26674
17-03-17 22:46:46.188 -07 000000618 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:46.188 -07 000000618 INF: Z Motor: Piezo is near 37.0 V (nominally 0 to 100 V), expect near 45.8 V, since DAC is at 4.584 V. Piezo Error = -8.9 V.
17-03-17 22:46:46.188 -07 000000618 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.5 um, Read 10 ADC samples: Avg = 30697 (-136.7 uncal um), Error = 0.8 uncal um, Median = 30697 (-136.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30691 (-136.7 uncal um), Max = 30704 (-136.8 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 22:46:46.188 -07 000000618 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30697, posNoise = 7, negNoise = 6
17-03-17 22:46:46.188 -07 000000618 INF: Z Motor: After move to -0.137519, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:46:46.188 -07 000000618 INF: Z Motor: Settle wait time = 1773 ms, measure time = 106 ms (allowed 150 ms), total time = 1879 ms
17-03-17 22:46:46.188 -07 000000618 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 22:46:46.238 -07 000000618 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1930 ms
17-03-17 22:46:46.238 -07 000000618 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:46:46.238 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:46:46.238 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:46:46.238 -07 000000547 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:46:46.238 -07 000000458 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:46:46.238 -07 000000482 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:46:46.238 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:46:46.238 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:46:46.238 -07 000000482 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:46:46.238 -07 000000482 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:46:46.238 -07 000000482 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:46:46.248 -07 000000482 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 22:46:46.248 -07 000000482 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 22:46:46.258 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:46:46.298 -07 000000482 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:46:46.498 -07 000000512 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:46:46.498 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:46:46.498 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:46:46.498 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1077874736, 0x0, 559484976) start.
17-03-17 22:46:46.538 -07 000000433 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:46:46.538 -07 000000618 INF: FPGA: Recv CAMSNAP
17-03-17 22:46:46.538 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 285 ms overall
17-03-17 22:46:46.618 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1077874736, 0x0, 559484976) end. Duration was 120 ms.
17-03-17 22:46:46.618 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:46:46.628 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 22:46:46.628 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 124 ms.
17-03-17 22:46:46.638 -07 000000547 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:46:46.638 -07 000000433 INF: Autofocus start
17-03-17 22:46:46.638 -07 000000433 INF: MeasureProfile start
17-03-17 22:46:46.638 -07 000000482 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:46:46.648 -07 000000547 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 22:46:46.648 -07 000000547 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:46:46.658 -07 000000433 INF: MeasureProfile done
17-03-17 22:46:46.658 -07 000000433 INF: X=-16  Z correction [um]=-0.08128808
17-03-17 22:46:46.658 -07 000000433 INF: Autofocus finished
17-03-17 22:46:46.848 -07 000000627 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:46:46.848 -07 000000547 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 192 ms to get response, and 202 ms overall
17-03-17 22:46:46.848 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.20556640625, Z-position -0.137527392126771. ----------
17-03-17 22:46:46.848 -07 000000610 INF: Cycle	67	Tile	11	Exposure Settings		A	459	G	221	T	221	C	459
17-03-17 22:46:46.858 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28536, sync = True, waitForSettling = True)
17-03-17 22:46:46.858 -07 000000610 INF: Z Motor: Moving to -0.130629 mm, started at -0.137527 mm, distance = 6.90 um
17-03-17 22:46:46.858 -07 000000610 INF: FPGA: Xmit ZDACW 28536\n [Z Motor]
17-03-17 22:46:46.858 -07 000000512 INF: FPGA: Recv ZDACW
17-03-17 22:46:46.868 -07 000000610 INF: FPGA: 'ZDACW 28536' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:46:46.868 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:46:46.868 -07 000000433 INF: FPGA: Recv ZDACR 28536
17-03-17 22:46:46.878 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:46.878 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:46:47.008 -07 000000458 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:46:47.008 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 66. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1047, R2=1076, Total=2123. Warn if over 250 bubbles per interval.
17-03-17 22:46:47.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:47.028 -07 000000512 INF: FPGA: Recv ZSGSRD 29620
17-03-17 22:46:47.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:46:47.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:47.038 -07 000000433 INF: FPGA: Recv ZSGSRD 29625
17-03-17 22:46:47.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:47.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:47.048 -07 000000482 INF: FPGA: Recv ZSGSRD 29631
17-03-17 22:46:47.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:47.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:47.058 -07 000000512 INF: FPGA: Recv ZSGSRD 29627
17-03-17 22:46:47.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:47.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:47.068 -07 000000459 INF: FPGA: Recv ZSGSRD 29622
17-03-17 22:46:47.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:47.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:47.078 -07 000000433 INF: FPGA: Recv ZSGSRD 29621
17-03-17 22:46:47.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:47.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:47.088 -07 000000482 INF: FPGA: Recv ZSGSRD 29630
17-03-17 22:46:47.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:47.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:47.098 -07 000000512 INF: FPGA: Recv ZSGSRD 29630
17-03-17 22:46:47.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:47.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:47.108 -07 000000458 INF: FPGA: Recv ZSGSRD 29620
17-03-17 22:46:47.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:47.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:47.118 -07 000000627 INF: FPGA: Recv ZSGSRD 29625
17-03-17 22:46:47.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:47.128 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:46:47.128 -07 000000547 INF: FPGA: Recv ZPIEZORD 25275
17-03-17 22:46:47.138 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:47.138 -07 000000610 INF: Z Motor: Piezo is near 34.0 V (nominally 0 to 100 V), expect near 43.5 V, since DAC is at 4.354 V. Piezo Error = -9.5 V.
17-03-17 22:46:47.138 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.6 um, Read 10 ADC samples: Avg = 29625 (-129.9 uncal um), Error = 0.8 uncal um, Median = 29625 (-129.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29620 (-129.8 uncal um), Max = 29631 (-129.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 22:46:47.138 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29625, posNoise = 6, negNoise = 5
17-03-17 22:46:47.138 -07 000000610 INF: Z Motor: After move to -0.130629, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:46:47.138 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 22:46:47.138 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:46:47.138 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:46:47.138 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:46:47.138 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:46:47.138 -07 000000482 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:46:47.138 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:46:47.138 -07 000000547 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:46:47.138 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:46:47.138 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:46:47.138 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:46:47.138 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:46:47.138 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:46:47.148 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:46:47.148 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:46:47.148 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:46:47.148 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:46:47.148 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 22:46:47.148 -07 000000482 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 22:46:47.158 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 22:46:47.158 -07 000000547 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 22:46:47.158 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 459 459 221 221 28713 150\n [Camera]
17-03-17 22:46:47.288 -07 000000459 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 67, FrontChillerTemperature: 4.005817,
17-03-17 22:46:47.358 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:46:47.818 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 651
17-03-17 22:46:47.818 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 651
17-03-17 22:46:47.818 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:46:47.818 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 651
17-03-17 22:46:47.818 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 651
17-03-17 22:46:47.818 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:46:47.818 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:46:47.818 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 1123698904, 0x0, 391868352) start.
17-03-17 22:46:47.828 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:46:47.828 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 22:46:48.008 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28713 844
17-03-17 22:46:48.158 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP turning grn on 994
17-03-17 22:46:48.198 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 1123698904, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 22:46:48.198 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 22:46:48.198 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:46:48.198 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 373 ms.
17-03-17 22:46:48.198 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-17 22:46:48.198 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:46:48.208 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:46:48.208 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 22:46:48.208 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:46:48.208 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 22:46:48.378 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1215
17-03-17 22:46:48.378 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1215
17-03-17 22:46:48.378 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:46:48.488 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1215
17-03-17 22:46:48.488 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1215
17-03-17 22:46:48.488 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:46:48.498 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:46:48.498 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 22:46:48.498 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:46:48.498 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 1092550816, 0x0, 418435064) start.
17-03-17 22:46:48.568 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP 1407
17-03-17 22:46:48.568 -07 000000458 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:46:48.568 -07 000000610 INF: FPGA: 'CAMDBLSNAP 459 459 221 221 28713 150' command took 2 ms to send, 1408 ms to get response, and 1415 ms overall
17-03-17 22:46:48.578 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 22:46:48.578 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.20556640625, Z-Position -0.130640636710803. ------
17-03-17 22:46:48.578 -07 000000433 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:46:48.578 -07 000000458 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.13725 mm
17-03-17 22:46:48.578 -07 000000458 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:46:48.578 -07 000000547 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-17 22:46:48.578 -07 000000547 INF: Y Motor: Moving to 69.0426 mm, started at 68.2056 mm, delta = 0.8370 mm
17-03-17 22:46:48.578 -07 000000627 INF: Z Motor: Entering MoveAbsStepped (DAC = 29982, sync = True, waitForSettling = False)
17-03-17 22:46:48.578 -07 000000627 INF: Z Motor: Moving to -0.137249 mm, started at -0.130641 mm, distance = -6.61 um
17-03-17 22:46:48.588 -07 000000627 INF: FPGA: Xmit ZDACW 29982\n [Z Motor]
17-03-17 22:46:48.598 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:46:48.898 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 1092550816, 0x0, 418435064) end. Duration was 401 ms.
17-03-17 22:46:48.898 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 22:46:48.898 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:46:48.898 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 401 ms.
17-03-17 22:46:48.898 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 22:46:48.898 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:46:48.908 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:46:48.908 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:46:48.908 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 527 ms.
17-03-17 22:46:48.918 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 421 ms.
17-03-17 22:46:48.918 -07 000000459 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:46:48.918 -07 000000459 INF: FPGA: Recv ZDACW
17-03-17 22:46:48.918 -07 000000459 INF: FPGA: Recv YRDPOS 139685
17-03-17 22:46:48.918 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 314 ms to get response, and 337 ms overall
17-03-17 22:46:48.918 -07 000000547 INF: Y Motor: Encoder = 139685 = motor step 109128.9 = 68.2056 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:46:48.918 -07 000000547 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:46:48.918 -07 000000547 INF: Y Motor: Moving 1339 steps-14
17-03-17 22:46:48.918 -07 000000547 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:46:48.918 -07 000000433 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 334 ms to get response, and 340 ms overall
17-03-17 22:46:48.918 -07 000000627 INF: FPGA: 'ZDACW 29982' command took 0 ms to send, 324 ms to get response, and 336 ms overall
17-03-17 22:46:48.928 -07 000000627 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:46:48.928 -07 000000482 INF: FPGA: Recv ZDACR 29982
17-03-17 22:46:48.938 -07 000000627 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 22:46:48.938 -07 000000627 INF: Z Motor: MoveAbsStepped took 352 ms (did NOT wait for settling yet))
17-03-17 22:46:48.938 -07 000000433 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:46:49.138 -07 000000459 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:46:49.138 -07 000000433 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 217 ms overall
17-03-17 22:46:49.298 -07 000000459 INF: FPGA: Recv YMVTILE
17-03-17 22:46:49.298 -07 000000547 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 373 ms to get response, and 378 ms overall
17-03-17 22:46:49.338 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:46:49.338 -07 000000459 INF: FPGA: Recv YRDPOS 141368
17-03-17 22:46:49.348 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:46:49.348 -07 000000547 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:46:49.348 -07 000000547 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-17 22:46:49.348 -07 000000547 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.837 mm, average velocity = 2.214 mm/sec
17-03-17 22:46:50.298 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:46:50.298 -07 000000627 INF: FPGA: Recv YRDPOS 141368
17-03-17 22:46:50.308 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:46:50.308 -07 000000547 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:46:50.328 -07 000000547 INF: Y Motor: After move to 69.042610, error = -0.015266, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:46:50.328 -07 000000547 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:46:50.328 -07 000000547 INF: Y Motor: Moved to 69.0273 after 1748 ms (table move)
17-03-17 22:46:50.328 -07 000000458 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137249 mm (DAC = 29982)
17-03-17 22:46:50.328 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:50.338 -07 000000627 INF: FPGA: Recv ZSGSRD 30658
17-03-17 22:46:50.338 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 22:46:50.338 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:50.338 -07 000000433 INF: FPGA: Recv ZSGSRD 30651
17-03-17 22:46:50.348 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:46:50.348 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:50.348 -07 000000627 INF: FPGA: Recv ZSGSRD 30652
17-03-17 22:46:50.358 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:50.358 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:50.358 -07 000000627 INF: FPGA: Recv ZSGSRD 30658
17-03-17 22:46:50.368 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:50.368 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:50.368 -07 000000547 INF: FPGA: Recv ZSGSRD 30661
17-03-17 22:46:50.378 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:50.378 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:50.378 -07 000000627 INF: FPGA: Recv ZSGSRD 30660
17-03-17 22:46:50.388 -07 000000458 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:50.388 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:50.388 -07 000000482 INF: FPGA: Recv ZSGSRD 30662
17-03-17 22:46:50.398 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:50.398 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:50.398 -07 000000433 INF: FPGA: Recv ZSGSRD 30653
17-03-17 22:46:50.408 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:50.408 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:50.408 -07 000000433 INF: FPGA: Recv ZSGSRD 30650
17-03-17 22:46:50.418 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:50.418 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:50.418 -07 000000482 INF: FPGA: Recv ZSGSRD 30653
17-03-17 22:46:50.428 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:50.428 -07 000000458 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:46:50.428 -07 000000459 INF: FPGA: Recv ZPIEZORD 26619
17-03-17 22:46:50.438 -07 000000458 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:50.438 -07 000000458 INF: Z Motor: Piezo is near 36.9 V (nominally 0 to 100 V), expect near 45.7 V, since DAC is at 4.575 V. Piezo Error = -8.9 V.
17-03-17 22:46:50.438 -07 000000458 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.2 um, Read 10 ADC samples: Avg = 30656 (-136.5 uncal um), Error = 0.8 uncal um, Median = 30656 (-136.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30650 (-136.4 uncal um), Max = 30662 (-136.5 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 22:46:50.438 -07 000000458 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30656, posNoise = 6, negNoise = 6
17-03-17 22:46:50.438 -07 000000458 INF: Z Motor: After move to -0.137249, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:46:50.438 -07 000000458 INF: Z Motor: Settle wait time = 1750 ms, measure time = 102 ms (allowed 150 ms), total time = 1852 ms
17-03-17 22:46:50.438 -07 000000458 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 22:46:50.488 -07 000000458 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1905 ms
17-03-17 22:46:50.488 -07 000000458 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:46:50.488 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:46:50.488 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:46:50.488 -07 000000547 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:46:50.488 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:46:50.488 -07 000000459 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:46:50.488 -07 000000482 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:46:50.488 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:46:50.488 -07 000000547 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:46:50.498 -07 000000547 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 22:46:50.498 -07 000000547 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:46:50.508 -07 000000547 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 8 ms.
17-03-17 22:46:50.508 -07 000000547 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-17 22:46:50.508 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:46:50.548 -07 000000433 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:46:50.748 -07 000000478 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:46:50.748 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:46:50.748 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:46:50.758 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1144848144, 0x0, 559484976) start.
17-03-17 22:46:50.788 -07 000000482 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:46:50.788 -07 000000459 INF: FPGA: Recv CAMSNAP
17-03-17 22:46:50.788 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 284 ms overall
17-03-17 22:46:50.868 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1144848144, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 22:46:50.868 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:46:50.868 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:46:50.868 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-17 22:46:50.888 -07 000000433 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:46:50.888 -07 000000478 INF: Autofocus start
17-03-17 22:46:50.888 -07 000000478 INF: MeasureProfile start
17-03-17 22:46:50.888 -07 000000459 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:46:50.898 -07 000000433 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:46:50.898 -07 000000433 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:46:50.898 -07 000000478 INF: MeasureProfile done
17-03-17 22:46:50.898 -07 000000478 INF: X=0  Z correction [um]=-0.02394831
17-03-17 22:46:50.898 -07 000000478 INF: Autofocus finished
17-03-17 22:46:51.098 -07 000000482 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:46:51.098 -07 000000433 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 203 ms overall
17-03-17 22:46:51.098 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02734375, Z-position -0.137263999428959. ----------
17-03-17 22:46:51.108 -07 000000610 INF: Cycle	67	Tile	12	Exposure Settings		A	459	G	221	T	221	C	459
17-03-17 22:46:51.108 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28489, sync = True, waitForSettling = True)
17-03-17 22:46:51.108 -07 000000610 INF: Z Motor: Moving to -0.130414 mm, started at -0.137264 mm, distance = 6.85 um
17-03-17 22:46:51.108 -07 000000610 INF: FPGA: Xmit ZDACW 28489\n [Z Motor]
17-03-17 22:46:51.108 -07 000000458 INF: FPGA: Recv ZDACW
17-03-17 22:46:51.118 -07 000000610 INF: FPGA: 'ZDACW 28489' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 22:46:51.118 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:46:51.118 -07 000000433 INF: FPGA: Recv ZDACR 28489
17-03-17 22:46:51.128 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:51.128 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:46:51.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:51.278 -07 000000458 INF: FPGA: Recv ZSGSRD 29587
17-03-17 22:46:51.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:46:51.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:51.288 -07 000000433 INF: FPGA: Recv ZSGSRD 29596
17-03-17 22:46:51.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:51.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:51.298 -07 000000551 INF: FPGA: Recv ZSGSRD 29586
17-03-17 22:46:51.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:51.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:51.308 -07 000000433 INF: FPGA: Recv ZSGSRD 29586
17-03-17 22:46:51.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:51.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:51.318 -07 000000459 INF: FPGA: Recv ZSGSRD 29591
17-03-17 22:46:51.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:51.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:51.328 -07 000000547 INF: FPGA: Recv ZSGSRD 29590
17-03-17 22:46:51.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:51.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:51.338 -07 000000551 INF: FPGA: Recv ZSGSRD 29588
17-03-17 22:46:51.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:51.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:51.348 -07 000000478 INF: FPGA: Recv ZSGSRD 29590
17-03-17 22:46:51.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:51.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:51.358 -07 000000551 INF: FPGA: Recv ZSGSRD 29589
17-03-17 22:46:51.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:51.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:51.368 -07 000000433 INF: FPGA: Recv ZSGSRD 29590
17-03-17 22:46:51.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:51.378 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:46:51.378 -07 000000458 INF: FPGA: Recv ZPIEZORD 25255
17-03-17 22:46:51.388 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:51.388 -07 000000610 INF: Z Motor: Piezo is near 34.0 V (nominally 0 to 100 V), expect near 43.5 V, since DAC is at 4.347 V. Piezo Error = -9.5 V.
17-03-17 22:46:51.388 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.4 um, Read 10 ADC samples: Avg = 29589 (-129.6 uncal um), Error = 0.8 uncal um, Median = 29590 (-129.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29586 (-129.6 uncal um), Max = 29596 (-129.7 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 22:46:51.388 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29589, posNoise = 7, negNoise = 3
17-03-17 22:46:51.388 -07 000000610 INF: Z Motor: After move to -0.130414, error = 0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:46:51.388 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 22:46:51.388 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:46:51.388 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:46:51.388 -07 000000551 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:46:51.388 -07 000000478 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:46:51.388 -07 000000547 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:46:51.388 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:46:51.388 -07 000000482 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:46:51.388 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:46:51.388 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-17 22:46:51.388 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:46:51.388 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 22:46:51.388 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:46:51.398 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 22:46:51.398 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:46:51.398 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:46:51.398 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:46:51.398 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 22:46:51.408 -07 000000482 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 22:46:51.408 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 22:46:51.408 -07 000000547 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 22:46:51.408 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 459 459 221 221 28666 150\n [Camera]
17-03-17 22:46:51.608 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:46:52.008 -07 000000458 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:46:52.008 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 66. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1047, R2=1076, Total=2123. Warn if over 250 bubbles per interval.
17-03-17 22:46:52.068 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 651
17-03-17 22:46:52.068 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 651
17-03-17 22:46:52.068 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:46:52.068 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 651
17-03-17 22:46:52.068 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 651
17-03-17 22:46:52.068 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:46:52.068 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:46:52.068 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 22:46:52.078 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:46:52.078 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 22:46:52.258 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28666 844
17-03-17 22:46:52.408 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP turning grn on 994
17-03-17 22:46:52.448 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 22:46:52.448 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 22:46:52.448 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:46:52.458 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 22:46:52.458 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 22:46:52.458 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:46:52.458 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:46:52.458 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 22:46:52.458 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:46:52.468 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 22:46:52.628 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1215
17-03-17 22:46:52.628 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1215
17-03-17 22:46:52.738 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1215
17-03-17 22:46:52.738 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1215
17-03-17 22:46:52.738 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:46:52.738 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:46:52.748 -07 000000627 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 67, FrontChillerTemperature: 3.970374,
17-03-17 22:46:52.748 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:46:52.748 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-17 22:46:52.748 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:46:52.748 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 22:46:52.818 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP 1407
17-03-17 22:46:52.818 -07 000000429 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:46:52.818 -07 000000610 INF: FPGA: 'CAMDBLSNAP 459 459 221 221 28666 150' command took 2 ms to send, 1407 ms to get response, and 1414 ms overall
17-03-17 22:46:52.818 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 22:46:52.818 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.02734375, Z-Position -0.1304093650737. ------
17-03-17 22:46:52.828 -07 000000458 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:46:52.828 -07 000000501 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.13679 mm
17-03-17 22:46:52.828 -07 000000501 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:46:52.828 -07 000000547 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-17 22:46:52.828 -07 000000547 INF: Y Motor: Moving to 69.8726 mm, started at 69.0273 mm, delta = 0.8453 mm
17-03-17 22:46:52.828 -07 000000627 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:46:52.828 -07 000000551 INF: Z Motor: Entering MoveAbsStepped (DAC = 29883, sync = True, waitForSettling = False)
17-03-17 22:46:52.828 -07 000000551 INF: Z Motor: Moving to -0.136796 mm, started at -0.130409 mm, distance = -6.39 um
17-03-17 22:46:52.838 -07 000000551 INF: FPGA: Xmit ZDACW 29883\n [Z Motor]
17-03-17 22:46:52.838 -07 000000458 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:46:52.838 -07 000000627 INF: FPGA: Recv ZDACW
17-03-17 22:46:52.848 -07 000000551 INF: FPGA: 'ZDACW 29883' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 22:46:52.848 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:46:52.848 -07 000000478 INF: FPGA: Recv YRDPOS 141369
17-03-17 22:46:52.858 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-17 22:46:52.858 -07 000000458 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:46:52.858 -07 000000547 INF: Y Motor: Encoder = 141369 = motor step 110444.5 = 69.0278 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:46:52.858 -07 000000547 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:46:52.858 -07 000000547 INF: Y Motor: Moving 1352 steps-31
17-03-17 22:46:52.868 -07 000000551 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:46:52.868 -07 000000561 INF: FPGA: Recv ZDACR 29883
17-03-17 22:46:52.878 -07 000000551 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:46:52.878 -07 000000551 INF: Z Motor: MoveAbsStepped took 42 ms (did NOT wait for settling yet))
17-03-17 22:46:52.878 -07 000000547 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:46:53.058 -07 000000478 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:46:53.058 -07 000000458 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 224 ms overall
17-03-17 22:46:53.138 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 392 ms.
17-03-17 22:46:53.138 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 22:46:53.138 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 394 ms.
17-03-17 22:46:53.138 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 22:46:53.138 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:46:53.138 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:46:53.148 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:46:53.148 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 22:46:53.148 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-17 22:46:53.148 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-17 22:46:53.248 -07 000000627 INF: FPGA: Recv YMVTILE
17-03-17 22:46:53.248 -07 000000547 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-17 22:46:53.298 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:46:53.298 -07 000000478 INF: FPGA: Recv YRDPOS 143081
17-03-17 22:46:53.308 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:46:53.308 -07 000000547 INF: Y Motor: Encoder = 143081 = motor step 111782.0 = 69.8638 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:46:53.308 -07 000000547 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-17 22:46:53.308 -07 000000547 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.845 mm, average velocity = 2.140 mm/sec
17-03-17 22:46:54.258 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:46:54.258 -07 000000478 INF: FPGA: Recv YRDPOS 143081
17-03-17 22:46:54.268 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:46:54.268 -07 000000547 INF: Y Motor: Encoder = 143081 = motor step 111782.0 = 69.8638 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:46:54.288 -07 000000547 INF: Y Motor: After move to 69.872612, error = -0.008842, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:46:54.288 -07 000000547 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:46:54.288 -07 000000547 INF: Y Motor: Moved to 69.8638 after 1459 ms (table move)
17-03-17 22:46:54.288 -07 000000501 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136796 mm (DAC = 29883)
17-03-17 22:46:54.288 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:54.298 -07 000000433 INF: FPGA: Recv ZSGSRD 30582
17-03-17 22:46:54.298 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 5 ms to get response, and 6 ms overall
17-03-17 22:46:54.298 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:54.298 -07 000000478 INF: FPGA: Recv ZSGSRD 30593
17-03-17 22:46:54.308 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 22:46:54.308 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:54.308 -07 000000482 INF: FPGA: Recv ZSGSRD 30593
17-03-17 22:46:54.318 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:54.318 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:54.318 -07 000000547 INF: FPGA: Recv ZSGSRD 30591
17-03-17 22:46:54.328 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:54.328 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:54.328 -07 000000627 INF: FPGA: Recv ZSGSRD 30581
17-03-17 22:46:54.338 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:54.338 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:54.338 -07 000000433 INF: FPGA: Recv ZSGSRD 30580
17-03-17 22:46:54.348 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:54.348 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:54.348 -07 000000547 INF: FPGA: Recv ZSGSRD 30578
17-03-17 22:46:54.358 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:54.358 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:54.358 -07 000000433 INF: FPGA: Recv ZSGSRD 30588
17-03-17 22:46:54.368 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:54.368 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:54.368 -07 000000547 INF: FPGA: Recv ZSGSRD 30586
17-03-17 22:46:54.378 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:54.378 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:54.378 -07 000000547 INF: FPGA: Recv ZSGSRD 30579
17-03-17 22:46:54.388 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:54.388 -07 000000501 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:46:54.388 -07 000000547 INF: FPGA: Recv ZPIEZORD 26561
17-03-17 22:46:54.398 -07 000000501 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:54.398 -07 000000501 INF: Z Motor: Piezo is near 36.7 V (nominally 0 to 100 V), expect near 45.6 V, since DAC is at 4.560 V. Piezo Error = -8.9 V.
17-03-17 22:46:54.398 -07 000000501 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.8 um, Read 10 ADC samples: Avg = 30585 (-136.0 uncal um), Error = 0.8 uncal um, Median = 30584 (-136.0 uncal um), StdDev = 6 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30578 (-136.0 uncal um), Max = 30593 (-136.1 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 22:46:54.398 -07 000000501 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30585, posNoise = 8, negNoise = 7
17-03-17 22:46:54.398 -07 000000501 INF: Z Motor: After move to -0.136796, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:46:54.398 -07 000000501 INF: Z Motor: Settle wait time = 1461 ms, measure time = 102 ms (allowed 150 ms), total time = 1563 ms
17-03-17 22:46:54.398 -07 000000501 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 22:46:54.448 -07 000000501 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1616 ms
17-03-17 22:46:54.448 -07 000000501 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:46:54.448 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:46:54.448 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:46:54.448 -07 000000547 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:46:54.448 -07 000000433 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:46:54.448 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:46:54.448 -07 000000478 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:46:54.448 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:46:54.448 -07 000000433 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:46:54.458 -07 000000433 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:46:54.458 -07 000000433 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:46:54.458 -07 000000433 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 22:46:54.458 -07 000000433 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 22:46:54.468 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:46:54.508 -07 000000478 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:46:54.708 -07 000000433 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:46:54.708 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:46:54.708 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:46:54.708 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1130172064, 0x0, 559484976) start.
17-03-17 22:46:54.748 -07 000000433 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:46:54.748 -07 000000486 INF: FPGA: Recv CAMSNAP
17-03-17 22:46:54.748 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 275 ms to get response, and 284 ms overall
17-03-17 22:46:54.828 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1130172064, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 22:46:54.828 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:46:54.828 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:46:54.828 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 22:46:54.848 -07 000000627 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:46:54.848 -07 000000547 INF: Autofocus start
17-03-17 22:46:54.848 -07 000000547 INF: MeasureProfile start
17-03-17 22:46:54.848 -07 000000478 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:46:54.858 -07 000000627 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 22:46:54.858 -07 000000627 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:46:54.858 -07 000000547 INF: MeasureProfile done
17-03-17 22:46:54.858 -07 000000547 INF: X=16  Z correction [um]=0.0530179
17-03-17 22:46:54.858 -07 000000547 INF: Autofocus finished
17-03-17 22:46:55.058 -07 000000433 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:46:55.058 -07 000000627 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:46:55.058 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86376953125, Z-position -0.136807880366894. ----------
17-03-17 22:46:55.058 -07 000000610 INF: Cycle	67	Tile	13	Exposure Settings		A	459	G	221	T	221	C	459
17-03-17 22:46:55.068 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28407, sync = True, waitForSettling = True)
17-03-17 22:46:55.068 -07 000000610 INF: Z Motor: Moving to -0.130039 mm, started at -0.136808 mm, distance = 6.77 um
17-03-17 22:46:55.068 -07 000000610 INF: FPGA: Xmit ZDACW 28407\n [Z Motor]
17-03-17 22:46:55.068 -07 000000478 INF: FPGA: Recv ZDACW
17-03-17 22:46:55.078 -07 000000610 INF: FPGA: 'ZDACW 28407' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:46:55.078 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:46:55.078 -07 000000486 INF: FPGA: Recv ZDACR 28407
17-03-17 22:46:55.088 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:55.088 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:46:55.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:55.238 -07 000000433 INF: FPGA: Recv ZSGSRD 29530
17-03-17 22:46:55.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:46:55.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:55.248 -07 000000627 INF: FPGA: Recv ZSGSRD 29529
17-03-17 22:46:55.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:55.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:55.258 -07 000000478 INF: FPGA: Recv ZSGSRD 29532
17-03-17 22:46:55.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:55.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:55.268 -07 000000627 INF: FPGA: Recv ZSGSRD 29538
17-03-17 22:46:55.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:55.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:55.278 -07 000000433 INF: FPGA: Recv ZSGSRD 29526
17-03-17 22:46:55.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:55.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:55.288 -07 000000478 INF: FPGA: Recv ZSGSRD 29531
17-03-17 22:46:55.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:55.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:55.298 -07 000000433 INF: FPGA: Recv ZSGSRD 29527
17-03-17 22:46:55.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:55.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:55.308 -07 000000478 INF: FPGA: Recv ZSGSRD 29529
17-03-17 22:46:55.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:55.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:55.318 -07 000000547 INF: FPGA: Recv ZSGSRD 29532
17-03-17 22:46:55.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:55.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:55.328 -07 000000482 INF: FPGA: Recv ZSGSRD 29533
17-03-17 22:46:55.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:55.338 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:46:55.338 -07 000000547 INF: FPGA: Recv ZPIEZORD 25184
17-03-17 22:46:55.348 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:55.348 -07 000000610 INF: Z Motor: Piezo is near 33.8 V (nominally 0 to 100 V), expect near 43.3 V, since DAC is at 4.335 V. Piezo Error = -9.5 V.
17-03-17 22:46:55.348 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.0 um, Read 10 ADC samples: Avg = 29531 (-129.3 uncal um), Error = 0.8 uncal um, Median = 29530 (-129.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29526 (-129.2 uncal um), Max = 29538 (-129.3 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 22:46:55.348 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29531, posNoise = 7, negNoise = 5
17-03-17 22:46:55.348 -07 000000610 INF: Z Motor: After move to -0.130039, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:46:55.348 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 22:46:55.348 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:46:55.348 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:46:55.348 -07 000000486 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:46:55.348 -07 000000482 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:46:55.348 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:46:55.348 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:46:55.348 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:46:55.348 -07 000000478 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:46:55.348 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:46:55.348 -07 000000433 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:46:55.348 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:46:55.348 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:46:55.348 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 22:46:55.348 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:46:55.358 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:46:55.358 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:46:55.368 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 11 ms.
17-03-17 22:46:55.368 -07 000000482 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 22:46:55.368 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 12 ms.
17-03-17 22:46:55.368 -07 000000478 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms.
17-03-17 22:46:55.368 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 459 459 221 221 28583 150\n [Camera]
17-03-17 22:46:55.568 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:46:56.028 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 651
17-03-17 22:46:56.028 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 651
17-03-17 22:46:56.028 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:46:56.028 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 651
17-03-17 22:46:56.028 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 651
17-03-17 22:46:56.038 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:46:56.038 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:46:56.038 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 22:46:56.038 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:46:56.038 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 22:46:56.218 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28583 844
17-03-17 22:46:56.368 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP turning grn on 994
17-03-17 22:46:56.418 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 22:46:56.418 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 22:46:56.418 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:46:56.418 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 22:46:56.418 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 22:46:56.418 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:46:56.418 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:46:56.528 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 109 ms.
17-03-17 22:46:56.528 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 495 ms.
17-03-17 22:46:56.528 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 497 ms.
17-03-17 22:46:56.588 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1215
17-03-17 22:46:56.588 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1215
17-03-17 22:46:56.598 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:46:56.598 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1215
17-03-17 22:46:56.598 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1215
17-03-17 22:46:56.598 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:46:56.598 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:46:56.598 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 22:46:56.608 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:46:56.608 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-17 22:46:56.788 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP 1408
17-03-17 22:46:56.788 -07 000000438 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:46:56.788 -07 000000610 INF: FPGA: 'CAMDBLSNAP 459 459 221 221 28583 150' command took 2 ms to send, 1411 ms to get response, and 1414 ms overall
17-03-17 22:46:56.788 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 22:46:56.788 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.86376953125, Z-Position -0.130036760769478. ------
17-03-17 22:46:56.788 -07 000000478 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:46:56.788 -07 000000576 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.13639 mm
17-03-17 22:46:56.788 -07 000000576 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:46:56.788 -07 000000547 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-17 22:46:56.788 -07 000000547 INF: Y Motor: Moving to 70.7026 mm, started at 69.8638 mm, delta = 0.8388 mm
17-03-17 22:46:56.798 -07 000000438 INF: Z Motor: Entering MoveAbsStepped (DAC = 29793, sync = True, waitForSettling = False)
17-03-17 22:46:56.798 -07 000000438 INF: Z Motor: Moving to -0.136384 mm, started at -0.130037 mm, distance = -6.35 um
17-03-17 22:46:56.798 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:46:56.798 -07 000000433 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:46:56.798 -07 000000478 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 6 ms overall
17-03-17 22:46:56.798 -07 000000561 INF: FPGA: Recv YRDPOS 143081
17-03-17 22:46:56.808 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:46:56.808 -07 000000547 INF: Y Motor: Encoder = 143081 = motor step 111782.0 = 69.8638 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:46:56.808 -07 000000547 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:46:56.808 -07 000000547 INF: Y Motor: Moving 1342 steps-18
17-03-17 22:46:56.808 -07 000000438 INF: FPGA: Xmit ZDACW 29793\n [Z Motor]
17-03-17 22:46:56.808 -07 000000627 INF: FPGA: Recv ZDACW
17-03-17 22:46:56.818 -07 000000478 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:46:56.818 -07 000000438 INF: FPGA: 'ZDACW 29793' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-17 22:46:56.828 -07 000000547 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:46:56.838 -07 000000438 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:46:56.838 -07 000000475 INF: FPGA: Recv ZDACR 29793
17-03-17 22:46:56.848 -07 000000438 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:46:56.848 -07 000000438 INF: Z Motor: MoveAbsStepped took 48 ms (did NOT wait for settling yet))
17-03-17 22:46:56.998 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 398 ms.
17-03-17 22:46:56.998 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 22:46:56.998 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:46:56.998 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 397 ms.
17-03-17 22:46:56.998 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 22:46:56.998 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:46:56.998 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:46:56.998 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-17 22:46:57.008 -07 000000486 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:46:57.008 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:46:57.008 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 66. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1047, R2=1076, Total=2123. Warn if over 250 bubbles per interval.
17-03-17 22:46:57.008 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-17 22:46:57.018 -07 000000458 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:46:57.018 -07 000000478 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 219 ms overall
17-03-17 22:46:57.198 -07 000000618 INF: FPGA: Recv YMVTILE
17-03-17 22:46:57.198 -07 000000547 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 22:46:57.238 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:46:57.248 -07 000000478 INF: FPGA: Recv YRDPOS 144771
17-03-17 22:46:57.248 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 22:46:57.248 -07 000000547 INF: Y Motor: Encoder = 144771 = motor step 113102.3 = 70.6890 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:46:57.248 -07 000000547 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 22:46:57.248 -07 000000547 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.839 mm, average velocity = 2.113 mm/sec
17-03-17 22:46:58.118 -07 000000478 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 67, FrontChillerTemperature: 3.962185,
17-03-17 22:46:58.198 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:46:58.198 -07 000000458 INF: FPGA: Recv YRDPOS 144771
17-03-17 22:46:58.208 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:46:58.208 -07 000000547 INF: Y Motor: Encoder = 144771 = motor step 113102.3 = 70.6890 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:46:58.228 -07 000000547 INF: Y Motor: After move to 70.702606, error = -0.013641, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:46:58.228 -07 000000547 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:46:58.228 -07 000000547 INF: Y Motor: Moved to 70.6890 after 1436 ms (table move)
17-03-17 22:46:58.228 -07 000000576 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136384 mm (DAC = 29793)
17-03-17 22:46:58.228 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:58.238 -07 000000433 INF: FPGA: Recv ZSGSRD 30522
17-03-17 22:46:58.238 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 22:46:58.238 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:58.238 -07 000000547 INF: FPGA: Recv ZSGSRD 30526
17-03-17 22:46:58.248 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:46:58.248 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:58.248 -07 000000501 INF: FPGA: Recv ZSGSRD 30516
17-03-17 22:46:58.258 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:58.258 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:58.258 -07 000000486 INF: FPGA: Recv ZSGSRD 30521
17-03-17 22:46:58.268 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:58.268 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:58.268 -07 000000501 INF: FPGA: Recv ZSGSRD 30525
17-03-17 22:46:58.278 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:58.278 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:58.278 -07 000000475 INF: FPGA: Recv ZSGSRD 30525
17-03-17 22:46:58.288 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:58.288 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:58.288 -07 000000512 INF: FPGA: Recv ZSGSRD 30513
17-03-17 22:46:58.298 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:58.298 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:58.298 -07 000000478 INF: FPGA: Recv ZSGSRD 30515
17-03-17 22:46:58.308 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:58.308 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:58.308 -07 000000475 INF: FPGA: Recv ZSGSRD 30517
17-03-17 22:46:58.318 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:58.318 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:58.318 -07 000000561 INF: FPGA: Recv ZSGSRD 30517
17-03-17 22:46:58.328 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:58.328 -07 000000576 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:46:58.328 -07 000000627 INF: FPGA: Recv ZPIEZORD 26511
17-03-17 22:46:58.338 -07 000000576 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:58.338 -07 000000576 INF: Z Motor: Piezo is near 36.6 V (nominally 0 to 100 V), expect near 45.5 V, since DAC is at 4.546 V. Piezo Error = -8.8 V.
17-03-17 22:46:58.338 -07 000000576 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.4 um, Read 10 ADC samples: Avg = 30520 (-135.6 uncal um), Error = 0.8 uncal um, Median = 30519 (-135.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30513 (-135.6 uncal um), Max = 30526 (-135.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 22:46:58.338 -07 000000576 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30520, posNoise = 6, negNoise = 7
17-03-17 22:46:58.338 -07 000000576 INF: Z Motor: After move to -0.136384, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:46:58.338 -07 000000576 INF: Z Motor: Settle wait time = 1436 ms, measure time = 102 ms (allowed 150 ms), total time = 1538 ms
17-03-17 22:46:58.338 -07 000000576 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 22:46:58.388 -07 000000576 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1593 ms
17-03-17 22:46:58.388 -07 000000576 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:46:58.388 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:46:58.388 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:46:58.388 -07 000000433 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:46:58.388 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:46:58.388 -07 000000627 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:46:58.388 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:46:58.398 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:46:58.398 -07 000000627 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:46:58.398 -07 000000627 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:46:58.398 -07 000000627 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:46:58.408 -07 000000627 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 22:46:58.408 -07 000000627 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 22:46:58.408 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:46:58.458 -07 000000576 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:46:58.658 -07 000000433 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:46:58.658 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:46:58.658 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:46:58.658 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1113297000, 0x0, 559484976) start.
17-03-17 22:46:58.698 -07 000000433 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:46:58.698 -07 000000458 INF: FPGA: Recv CAMSNAP
17-03-17 22:46:58.698 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 287 ms to get response, and 288 ms overall
17-03-17 22:46:58.768 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1113297000, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 22:46:58.768 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:46:58.778 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 22:46:58.778 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 22:46:58.798 -07 000000486 INF: Autofocus start
17-03-17 22:46:58.798 -07 000000486 INF: MeasureProfile start
17-03-17 22:46:58.798 -07 000000438 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:46:58.798 -07 000000458 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:46:58.808 -07 000000438 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:46:58.808 -07 000000438 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:46:58.808 -07 000000486 INF: MeasureProfile done
17-03-17 22:46:58.808 -07 000000486 INF: X=16  Z correction [um]=0.0530179
17-03-17 22:46:58.808 -07 000000486 INF: Autofocus finished
17-03-17 22:46:59.008 -07 000000618 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:46:59.008 -07 000000438 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 191 ms to get response, and 202 ms overall
17-03-17 22:46:59.008 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.68896484375, Z-position -0.136390306577679. ----------
17-03-17 22:46:59.018 -07 000000610 INF: Cycle	67	Tile	14	Exposure Settings		A	459	G	221	T	221	C	459
17-03-17 22:46:59.018 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28318, sync = True, waitForSettling = True)
17-03-17 22:46:59.018 -07 000000610 INF: Z Motor: Moving to -0.129631 mm, started at -0.136390 mm, distance = 6.76 um
17-03-17 22:46:59.018 -07 000000610 INF: FPGA: Xmit ZDACW 28318\n [Z Motor]
17-03-17 22:46:59.018 -07 000000438 INF: FPGA: Recv ZDACW
17-03-17 22:46:59.028 -07 000000610 INF: FPGA: 'ZDACW 28318' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:46:59.028 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:46:59.028 -07 000000433 INF: FPGA: Recv ZDACR 28318
17-03-17 22:46:59.038 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:59.038 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:46:59.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:59.188 -07 000000618 INF: FPGA: Recv ZSGSRD 29472
17-03-17 22:46:59.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:46:59.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:59.198 -07 000000433 INF: FPGA: Recv ZSGSRD 29471
17-03-17 22:46:59.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:59.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:59.208 -07 000000482 INF: FPGA: Recv ZSGSRD 29470
17-03-17 22:46:59.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:59.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:59.218 -07 000000618 INF: FPGA: Recv ZSGSRD 29467
17-03-17 22:46:59.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:59.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:59.228 -07 000000482 INF: FPGA: Recv ZSGSRD 29462
17-03-17 22:46:59.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:59.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:59.238 -07 000000438 INF: FPGA: Recv ZSGSRD 29469
17-03-17 22:46:59.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:59.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:59.248 -07 000000486 INF: FPGA: Recv ZSGSRD 29466
17-03-17 22:46:59.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:59.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:59.258 -07 000000475 INF: FPGA: Recv ZSGSRD 29468
17-03-17 22:46:59.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:59.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:59.268 -07 000000438 INF: FPGA: Recv ZSGSRD 29468
17-03-17 22:46:59.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:59.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:46:59.278 -07 000000433 INF: FPGA: Recv ZSGSRD 29470
17-03-17 22:46:59.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:59.288 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:46:59.288 -07 000000475 INF: FPGA: Recv ZPIEZORD 25107
17-03-17 22:46:59.298 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:46:59.298 -07 000000610 INF: Z Motor: Piezo is near 33.6 V (nominally 0 to 100 V), expect near 43.2 V, since DAC is at 4.321 V. Piezo Error = -9.6 V.
17-03-17 22:46:59.298 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.6 um, Read 10 ADC samples: Avg = 29468 (-128.9 uncal um), Error = 0.8 uncal um, Median = 29468 (-128.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29462 (-128.8 uncal um), Max = 29472 (-128.9 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 22:46:59.298 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29468, posNoise = 4, negNoise = 6
17-03-17 22:46:59.298 -07 000000610 INF: Z Motor: After move to -0.129631, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:46:59.298 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 22:46:59.298 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:46:59.298 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:46:59.298 -07 000000482 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:46:59.298 -07 000000458 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:46:59.298 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:46:59.298 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:46:59.298 -07 000000486 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:46:59.298 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:46:59.298 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:46:59.298 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:46:59.298 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 22:46:59.298 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:46:59.308 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:46:59.308 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:46:59.308 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 22:46:59.308 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:46:59.308 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 22:46:59.308 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 22:46:59.318 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 22:46:59.318 -07 000000486 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 22:46:59.318 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 459 459 221 221 28494 150\n [Camera]
17-03-17 22:46:59.518 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:46:59.978 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 651
17-03-17 22:46:59.978 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 651
17-03-17 22:46:59.978 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:46:59.978 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 651
17-03-17 22:46:59.978 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 651
17-03-17 22:46:59.978 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:46:59.978 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:46:59.978 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 1144848144, 0x0, 391868352) start.
17-03-17 22:46:59.988 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:46:59.988 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 22:47:00.168 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28494 844
17-03-17 22:47:00.318 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP turning grn on 994
17-03-17 22:47:00.358 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 372 ms.
17-03-17 22:47:00.358 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-17 22:47:00.358 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:47:00.358 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 1144848144, 0x0, 391868352) end. Duration was 375 ms.
17-03-17 22:47:00.358 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-17 22:47:00.358 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:47:00.358 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:47:00.358 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:47:00.358 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 22:47:00.368 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 22:47:00.538 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1215
17-03-17 22:47:00.538 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1215
17-03-17 22:47:00.538 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:47:00.538 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1215
17-03-17 22:47:00.538 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1215
17-03-17 22:47:00.538 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:47:00.538 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:47:00.538 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 22:47:00.548 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:47:00.548 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-17 22:47:00.728 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP 1408
17-03-17 22:47:00.728 -07 000000486 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:47:00.728 -07 000000610 INF: FPGA: 'CAMDBLSNAP 459 459 221 221 28494 150' command took 2 ms to send, 1406 ms to get response, and 1415 ms overall
17-03-17 22:47:00.728 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 22:47:00.728 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.68896484375, Z-Position -0.129632035404547. ------
17-03-17 22:47:00.738 -07 000000433 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.13579 mm
17-03-17 22:47:00.738 -07 000000433 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:47:00.738 -07 000000482 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:47:00.738 -07 000000438 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-17 22:47:00.738 -07 000000438 INF: Y Motor: Moving to 71.5326 mm, started at 70.6890 mm, delta = 0.8436 mm
17-03-17 22:47:00.738 -07 000000486 INF: Z Motor: Entering MoveAbsStepped (DAC = 29664, sync = True, waitForSettling = False)
17-03-17 22:47:00.738 -07 000000486 INF: Z Motor: Moving to -0.135793 mm, started at -0.129632 mm, distance = -6.16 um
17-03-17 22:47:00.738 -07 000000458 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:47:00.748 -07 000000482 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 22:47:00.748 -07 000000486 INF: FPGA: Xmit ZDACW 29664\n [Z Motor]
17-03-17 22:47:00.748 -07 000000459 INF: FPGA: Recv ZDACW
17-03-17 22:47:00.758 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:47:00.758 -07 000000486 INF: FPGA: 'ZDACW 29664' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 22:47:00.758 -07 000000429 INF: FPGA: Recv YRDPOS 144771
17-03-17 22:47:00.768 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-17 22:47:00.768 -07 000000482 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:47:00.768 -07 000000438 INF: Y Motor: Encoder = 144771 = motor step 113102.3 = 70.6890 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:47:00.768 -07 000000438 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:47:00.768 -07 000000438 INF: Y Motor: Moving 1350 steps-28
17-03-17 22:47:00.778 -07 000000486 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:47:00.778 -07 000000429 INF: FPGA: Recv ZDACR 29664
17-03-17 22:47:00.788 -07 000000486 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:47:00.788 -07 000000486 INF: Z Motor: MoveAbsStepped took 43 ms (did NOT wait for settling yet))
17-03-17 22:47:00.788 -07 000000438 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:47:00.938 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 395 ms.
17-03-17 22:47:00.938 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 22:47:00.938 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:47:00.938 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 399 ms.
17-03-17 22:47:00.938 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 22:47:00.938 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:47:00.948 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:47:00.948 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-17 22:47:00.948 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:47:00.958 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-17 22:47:00.968 -07 000000458 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:47:00.968 -07 000000482 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 22:47:01.168 -07 000000486 INF: FPGA: Recv YMVTILE
17-03-17 22:47:01.168 -07 000000438 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 372 ms to get response, and 401 ms overall
17-03-17 22:47:01.208 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:47:01.208 -07 000000561 INF: FPGA: Recv YRDPOS 146471
17-03-17 22:47:01.218 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:47:01.218 -07 000000438 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:47:01.218 -07 000000438 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 22:47:01.218 -07 000000438 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 401 ms, distance = 0.844 mm, average velocity = 2.104 mm/sec
17-03-17 22:47:02.008 -07 000000486 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:47:02.008 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 66. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1047, R2=1076, Total=2123. Warn if over 250 bubbles per interval.
17-03-17 22:47:02.168 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:47:02.168 -07 000000458 INF: FPGA: Recv YRDPOS 146471
17-03-17 22:47:02.178 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:47:02.178 -07 000000438 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:47:02.198 -07 000000438 INF: Y Motor: After move to 71.532608, error = -0.013565, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:47:02.198 -07 000000438 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:47:02.198 -07 000000438 INF: Y Motor: Moved to 71.5190 after 1459 ms (table move)
17-03-17 22:47:02.198 -07 000000433 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135793 mm (DAC = 29664)
17-03-17 22:47:02.198 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:47:02.208 -07 000000618 INF: FPGA: Recv ZSGSRD 30428
17-03-17 22:47:02.208 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-17 22:47:02.208 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:47:02.208 -07 000000438 INF: FPGA: Recv ZSGSRD 30430
17-03-17 22:47:02.218 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:47:02.218 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:47:02.218 -07 000000618 INF: FPGA: Recv ZSGSRD 30422
17-03-17 22:47:02.228 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:47:02.228 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:47:02.228 -07 000000475 INF: FPGA: Recv ZSGSRD 30423
17-03-17 22:47:02.238 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:47:02.238 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:47:02.238 -07 000000627 INF: FPGA: Recv ZSGSRD 30424
17-03-17 22:47:02.248 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:47:02.248 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:47:02.248 -07 000000475 INF: FPGA: Recv ZSGSRD 30434
17-03-17 22:47:02.258 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:47:02.258 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:47:02.258 -07 000000618 INF: FPGA: Recv ZSGSRD 30431
17-03-17 22:47:02.268 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:47:02.268 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:47:02.268 -07 000000576 INF: FPGA: Recv ZSGSRD 30429
17-03-17 22:47:02.278 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:47:02.278 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:47:02.278 -07 000000551 INF: FPGA: Recv ZSGSRD 30431
17-03-17 22:47:02.288 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:47:02.288 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:47:02.288 -07 000000458 INF: FPGA: Recv ZSGSRD 30424
17-03-17 22:47:02.298 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:47:02.298 -07 000000433 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:47:02.298 -07 000000482 INF: FPGA: Recv ZPIEZORD 26381
17-03-17 22:47:02.308 -07 000000433 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:47:02.308 -07 000000433 INF: Z Motor: Piezo is near 36.4 V (nominally 0 to 100 V), expect near 45.3 V, since DAC is at 4.526 V. Piezo Error = -8.9 V.
17-03-17 22:47:02.308 -07 000000433 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.8 um, Read 10 ADC samples: Avg = 30428 (-135.0 uncal um), Error = 0.8 uncal um, Median = 30428 (-135.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30422 (-135.0 uncal um), Max = 30434 (-135.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 22:47:02.308 -07 000000433 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30428, posNoise = 6, negNoise = 6
17-03-17 22:47:02.308 -07 000000433 INF: Z Motor: After move to -0.135793, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:47:02.308 -07 000000433 INF: Z Motor: Settle wait time = 1462 ms, measure time = 101 ms (allowed 150 ms), total time = 1563 ms
17-03-17 22:47:02.308 -07 000000433 INF: Z Motor: Waiting extra 49 ms after reading position to reach expected total of 150 ms
17-03-17 22:47:02.358 -07 000000433 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1615 ms
17-03-17 22:47:02.358 -07 000000433 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:47:02.358 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:47:02.358 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:47:02.358 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:47:02.358 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:47:02.358 -07 000000482 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:47:02.358 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:47:02.358 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:47:02.358 -07 000000482 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:47:02.368 -07 000000482 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:47:02.368 -07 000000482 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:47:02.378 -07 000000482 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 22:47:02.378 -07 000000482 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-17 22:47:02.378 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:47:02.418 -07 000000433 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:47:02.618 -07 000000438 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:47:02.618 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:47:02.628 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:47:02.628 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) start.
17-03-17 22:47:02.658 -07 000000482 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:47:02.658 -07 000000433 INF: FPGA: Recv CAMSNAP
17-03-17 22:47:02.658 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 285 ms overall
17-03-17 22:47:02.738 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 22:47:02.738 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:47:02.738 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 22:47:02.738 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 22:47:02.758 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:47:02.758 -07 000000458 INF: Autofocus start
17-03-17 22:47:02.758 -07 000000458 INF: MeasureProfile start
17-03-17 22:47:02.758 -07 000000433 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:47:02.768 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:47:02.768 -07 000000501 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:47:02.768 -07 000000458 INF: MeasureProfile done
17-03-17 22:47:02.768 -07 000000458 INF: X=16  Z correction [um]=0.0530179
17-03-17 22:47:02.768 -07 000000458 INF: Autofocus finished
17-03-17 22:47:02.968 -07 000000618 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:47:02.968 -07 000000501 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 204 ms overall
17-03-17 22:47:02.968 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.51904296875, Z-position -0.135799279060637. ----------
17-03-17 22:47:02.968 -07 000000610 INF: Cycle	67	Tile	15	Exposure Settings		A	459	G	221	T	221	C	459
17-03-17 22:47:02.978 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28188, sync = True, waitForSettling = True)
17-03-17 22:47:02.978 -07 000000610 INF: Z Motor: Moving to -0.129036 mm, started at -0.135799 mm, distance = 6.76 um
17-03-17 22:47:02.978 -07 000000610 INF: FPGA: Xmit ZDACW 28188\n [Z Motor]
17-03-17 22:47:02.978 -07 000000627 INF: FPGA: Recv ZDACW
17-03-17 22:47:02.988 -07 000000610 INF: FPGA: 'ZDACW 28188' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:47:02.988 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:47:02.988 -07 000000482 INF: FPGA: Recv ZDACR 28188
17-03-17 22:47:02.998 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:47:02.998 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:47:03.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:47:03.148 -07 000000561 INF: FPGA: Recv ZSGSRD 29380
17-03-17 22:47:03.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:47:03.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:47:03.158 -07 000000501 INF: FPGA: Recv ZSGSRD 29376
17-03-17 22:47:03.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:47:03.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:47:03.178 -07 000000433 INF: FPGA: Recv ZSGSRD 29374
17-03-17 22:47:03.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:47:03.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:47:03.188 -07 000000501 INF: FPGA: Recv ZSGSRD 29376
17-03-17 22:47:03.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:47:03.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:47:03.198 -07 000000576 INF: FPGA: Recv ZSGSRD 29377
17-03-17 22:47:03.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:47:03.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:47:03.208 -07 000000429 INF: FPGA: Recv ZSGSRD 29382
17-03-17 22:47:03.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:47:03.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:47:03.218 -07 000000433 INF: FPGA: Recv ZSGSRD 29380
17-03-17 22:47:03.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:47:03.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:47:03.228 -07 000000458 INF: FPGA: Recv ZSGSRD 29375
17-03-17 22:47:03.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:47:03.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:47:03.238 -07 000000627 INF: FPGA: Recv ZSGSRD 29377
17-03-17 22:47:03.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:47:03.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:47:03.248 -07 000000429 INF: FPGA: Recv ZSGSRD 29379
17-03-17 22:47:03.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:47:03.258 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:47:03.258 -07 000000475 INF: FPGA: Recv ZPIEZORD 25037
17-03-17 22:47:03.268 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:47:03.268 -07 000000610 INF: Z Motor: Piezo is near 33.5 V (nominally 0 to 100 V), expect near 43.0 V, since DAC is at 4.301 V. Piezo Error = -9.5 V.
17-03-17 22:47:03.268 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.0 um, Read 10 ADC samples: Avg = 29378 (-128.3 uncal um), Error = 0.8 uncal um, Median = 29377 (-128.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29374 (-128.3 uncal um), Max = 29382 (-128.3 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 22:47:03.268 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29378, posNoise = 4, negNoise = 4
17-03-17 22:47:03.268 -07 000000610 INF: Z Motor: After move to -0.129036, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:47:03.268 -07 000000610 INF: Z Motor: MoveAbsStepped took 288 ms)
17-03-17 22:47:03.268 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:47:03.268 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:47:03.268 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:47:03.268 -07 000000433 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:47:03.268 -07 000000429 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:47:03.268 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:47:03.268 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 22:47:03.268 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:47:03.268 -07 000000551 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:47:03.268 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:47:03.268 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:47:03.268 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:47:03.278 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:47:03.278 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:47:03.278 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 22:47:03.278 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:47:03.278 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 22:47:03.278 -07 000000551 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 22:47:03.278 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 22:47:03.278 -07 000000429 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 22:47:03.288 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 459 459 221 221 28365 150\n [Camera]
17-03-17 22:47:03.488 -07 000000475 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 67, FrontChillerTemperature: 3.978563,
17-03-17 22:47:03.488 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:47:03.948 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 651
17-03-17 22:47:03.948 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 651
17-03-17 22:47:03.948 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:47:03.948 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:47:03.948 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2235207384, 0x0, 391868352) start.
17-03-17 22:47:03.948 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 651
17-03-17 22:47:03.948 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 651
17-03-17 22:47:03.948 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:47:04.068 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:47:04.068 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-17 22:47:04.138 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28365 844
17-03-17 22:47:04.288 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP turning grn on 994
17-03-17 22:47:04.328 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2235207384, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 22:47:04.328 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 22:47:04.328 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:47:04.328 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:47:04.328 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 22:47:04.448 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 22:47:04.448 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 22:47:04.448 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:47:04.448 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 22:47:04.458 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 508 ms.
17-03-17 22:47:04.508 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1215
17-03-17 22:47:04.508 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1215
17-03-17 22:47:04.508 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:47:04.508 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1215
17-03-17 22:47:04.508 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1215
17-03-17 22:47:04.508 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:47:04.518 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:47:04.518 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-17 22:47:04.518 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:47:04.518 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 1136783688, 0x0, 418435064) start.
17-03-17 22:47:04.698 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP 1410
17-03-17 22:47:04.698 -07 000000576 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:47:04.698 -07 000000610 INF: FPGA: 'CAMDBLSNAP 459 459 221 221 28365 150' command took 2 ms to send, 1409 ms to get response, and 1418 ms overall
17-03-17 22:47:04.708 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 22:47:04.708 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.51904296875, Z-Position -0.129053856311788. ------
17-03-17 22:47:04.708 -07 000000475 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:47:04.708 -07 000000458 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.13537 mm
17-03-17 22:47:04.708 -07 000000458 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:47:04.708 -07 000000627 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:47:04.708 -07 000000576 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-17 22:47:04.708 -07 000000576 INF: Y Motor: Moving to 72.3626 mm, started at 71.5190 mm, delta = 0.8436 mm
17-03-17 22:47:04.718 -07 000000475 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 22:47:04.718 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:47:04.718 -07 000000429 INF: Z Motor: Entering MoveAbsStepped (DAC = 29571, sync = True, waitForSettling = False)
17-03-17 22:47:04.718 -07 000000429 INF: Z Motor: Moving to -0.135367 mm, started at -0.129054 mm, distance = -6.31 um
17-03-17 22:47:04.718 -07 000000627 INF: FPGA: Recv YRDPOS 146471
17-03-17 22:47:04.728 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:47:04.728 -07 000000576 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:47:04.728 -07 000000576 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:47:04.728 -07 000000576 INF: Y Motor: Moving 1350 steps-28
17-03-17 22:47:04.728 -07 000000429 INF: FPGA: Xmit ZDACW 29571\n [Z Motor]
17-03-17 22:47:04.728 -07 000000618 INF: FPGA: Recv ZDACW
17-03-17 22:47:04.738 -07 000000475 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:47:04.738 -07 000000429 INF: FPGA: 'ZDACW 29571' command took 1 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:47:04.748 -07 000000576 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:47:04.758 -07 000000429 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:47:04.758 -07 000000618 INF: FPGA: Recv ZDACR 29571
17-03-17 22:47:04.768 -07 000000429 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:47:04.768 -07 000000429 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-17 22:47:04.908 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 1136783688, 0x0, 418435064) end. Duration was 393 ms.
17-03-17 22:47:04.908 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 22:47:04.908 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:47:04.918 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 396 ms.
17-03-17 22:47:04.918 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 22:47:04.918 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:47:04.918 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:47:04.918 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:47:04.918 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-17 22:47:04.918 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-17 22:47:04.938 -07 000000486 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:47:04.938 -07 000000475 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 22:47:05.118 -07 000000438 INF: FPGA: Recv YMVTILE
17-03-17 22:47:05.118 -07 000000576 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 22:47:05.158 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:47:05.168 -07 000000618 INF: FPGA: Recv YRDPOS 148172
17-03-17 22:47:05.168 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:47:05.168 -07 000000576 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:47:05.168 -07 000000576 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-17 22:47:05.168 -07 000000576 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.844 mm, average velocity = 2.125 mm/sec
17-03-17 22:47:06.118 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:47:06.118 -07 000000429 INF: FPGA: Recv YRDPOS 148172
17-03-17 22:47:06.128 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:47:06.128 -07 000000576 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:47:06.148 -07 000000576 INF: Y Motor: After move to 72.362610, error = -0.013000, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:47:06.148 -07 000000576 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:47:06.148 -07 000000576 INF: Y Motor: Moved to 72.3496 after 1435 ms (table move)
17-03-17 22:47:06.148 -07 000000458 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135367 mm (DAC = 29571)
17-03-17 22:47:06.148 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:47:06.158 -07 000000576 INF: FPGA: Recv ZSGSRD 30372
17-03-17 22:47:06.158 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 22:47:06.158 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:47:06.158 -07 000000438 INF: FPGA: Recv ZSGSRD 30365
17-03-17 22:47:06.168 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:47:06.168 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:47:06.168 -07 000000618 INF: FPGA: Recv ZSGSRD 30358
17-03-17 22:47:06.178 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:47:06.178 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:47:06.178 -07 000000475 INF: FPGA: Recv ZSGSRD 30361
17-03-17 22:47:06.188 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:47:06.188 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:47:06.188 -07 000000438 INF: FPGA: Recv ZSGSRD 30361
17-03-17 22:47:06.198 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:47:06.198 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:47:06.198 -07 000000475 INF: FPGA: Recv ZSGSRD 30372
17-03-17 22:47:06.208 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:47:06.208 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:47:06.208 -07 000000576 INF: FPGA: Recv ZSGSRD 30364
17-03-17 22:47:06.218 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:47:06.218 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:47:06.218 -07 000000475 INF: FPGA: Recv ZSGSRD 30353
17-03-17 22:47:06.228 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:47:06.228 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:47:06.228 -07 000000429 INF: FPGA: Recv ZSGSRD 30364
17-03-17 22:47:06.238 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:47:06.238 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:47:06.238 -07 000000475 INF: FPGA: Recv ZSGSRD 30360
17-03-17 22:47:06.248 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:47:06.248 -07 000000458 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:47:06.248 -07 000000438 INF: FPGA: Recv ZPIEZORD 26345
17-03-17 22:47:06.258 -07 000000458 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:47:06.258 -07 000000458 INF: Z Motor: Piezo is near 36.3 V (nominally 0 to 100 V), expect near 45.1 V, since DAC is at 4.512 V. Piezo Error = -8.8 V.
17-03-17 22:47:06.258 -07 000000458 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.4 um, Read 10 ADC samples: Avg = 30363 (-134.6 uncal um), Error = 0.8 uncal um, Median = 30362 (-134.6 uncal um), StdDev = 6 (0.0 uncal um), Range = 19 (0.1 uncal um), Min = 30353 (-134.5 uncal um), Max = 30372 (-134.6 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-17 22:47:06.258 -07 000000458 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30363, posNoise = 9, negNoise = 10
17-03-17 22:47:06.258 -07 000000458 INF: Z Motor: After move to -0.135367, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:47:06.258 -07 000000458 INF: Z Motor: Settle wait time = 1438 ms, measure time = 102 ms (allowed 150 ms), total time = 1540 ms
17-03-17 22:47:06.258 -07 000000458 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 22:47:06.308 -07 000000458 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1595 ms
17-03-17 22:47:06.308 -07 000000458 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:47:06.308 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:47:06.308 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:47:06.308 -07 000000475 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:47:06.308 -07 000000486 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:47:06.308 -07 000000429 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:47:06.308 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:47:06.308 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:47:06.308 -07 000000429 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:47:06.318 -07 000000429 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:47:06.318 -07 000000429 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:47:06.328 -07 000000429 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 22:47:06.328 -07 000000429 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 22:47:06.328 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:47:06.378 -07 000000458 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:47:06.578 -07 000000429 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:47:06.578 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:47:06.578 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:47:06.578 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1172205952, 0x0, 559484976) start.
17-03-17 22:47:06.618 -07 000000475 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:47:06.618 -07 000000576 INF: FPGA: Recv CAMSNAP
17-03-17 22:47:06.618 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 284 ms overall
17-03-17 22:47:06.698 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1172205952, 0x0, 559484976) end. Duration was 119 ms.
17-03-17 22:47:06.698 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:47:06.698 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:47:06.698 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 121 ms.
17-03-17 22:47:06.828 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:47:06.828 -07 000000618 INF: Autofocus start
17-03-17 22:47:06.828 -07 000000618 INF: MeasureProfile start
17-03-17 22:47:06.828 -07 000000486 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:47:06.838 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:47:06.838 -07 000000576 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:47:06.838 -07 000000618 INF: MeasureProfile done
17-03-17 22:47:06.838 -07 000000618 INF: X=16  Z correction [um]=0.0530179
17-03-17 22:47:06.838 -07 000000618 INF: Autofocus finished
17-03-17 22:47:07.008 -07 000000475 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:47:07.008 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 66. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1047, R2=1076, Total=2123. Warn if over 250 bubbles per interval.
17-03-17 22:47:07.038 -07 000000618 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:47:07.038 -07 000000576 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 203 ms overall
17-03-17 22:47:07.048 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.349609375, Z-position -0.135381705271423. ----------
17-03-17 22:47:07.048 -07 000000610 INF: Cycle	67	Tile	16	Exposure Settings		A	459	G	221	T	221	C	459
17-03-17 22:47:07.048 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28095, sync = True, waitForSettling = True)
17-03-17 22:47:07.048 -07 000000610 INF: Z Motor: Moving to -0.128611 mm, started at -0.135382 mm, distance = 6.77 um
17-03-17 22:47:07.048 -07 000000610 INF: FPGA: Xmit ZDACW 28095\n [Z Motor]
17-03-17 22:47:07.058 -07 000000438 INF: FPGA: Recv ZDACW
17-03-17 22:47:07.058 -07 000000610 INF: FPGA: 'ZDACW 28095' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-17 22:47:07.058 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:47:07.058 -07 000000458 INF: FPGA: Recv ZDACR 28095
17-03-17 22:47:07.068 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:47:07.068 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:47:07.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:47:07.218 -07 000000475 INF: FPGA: Recv ZSGSRD 29317
17-03-17 22:47:07.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:47:07.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:47:07.238 -07 000000429 INF: FPGA: Recv ZSGSRD 29312
17-03-17 22:47:07.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 22:47:07.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:47:07.238 -07 000000475 INF: FPGA: Recv ZSGSRD 29313
17-03-17 22:47:07.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:47:07.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:47:07.248 -07 000000618 INF: FPGA: Recv ZSGSRD 29310
17-03-17 22:47:07.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:47:07.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:47:07.258 -07 000000438 INF: FPGA: Recv ZSGSRD 29307
17-03-17 22:47:07.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:47:07.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:47:07.268 -07 000000618 INF: FPGA: Recv ZSGSRD 29313
17-03-17 22:47:07.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:47:07.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:47:07.278 -07 000000475 INF: FPGA: Recv ZSGSRD 29305
17-03-17 22:47:07.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:47:07.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:47:07.288 -07 000000618 INF: FPGA: Recv ZSGSRD 29306
17-03-17 22:47:07.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:47:07.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:47:07.298 -07 000000486 INF: FPGA: Recv ZSGSRD 29318
17-03-17 22:47:07.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:47:07.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:47:07.308 -07 000000429 INF: FPGA: Recv ZSGSRD 29306
17-03-17 22:47:07.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:47:07.318 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:47:07.318 -07 000000627 INF: FPGA: Recv ZPIEZORD 24946
17-03-17 22:47:07.328 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:47:07.328 -07 000000610 INF: Z Motor: Piezo is near 33.3 V (nominally 0 to 100 V), expect near 42.9 V, since DAC is at 4.287 V. Piezo Error = -9.6 V.
17-03-17 22:47:07.328 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.6 um, Read 10 ADC samples: Avg = 29311 (-127.8 uncal um), Error = 0.8 uncal um, Median = 29311 (-127.8 uncal um), StdDev = 5 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29305 (-127.8 uncal um), Max = 29318 (-127.9 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 22:47:07.328 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29311, posNoise = 7, negNoise = 6
17-03-17 22:47:07.328 -07 000000610 INF: Z Motor: After move to -0.128611, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:47:07.328 -07 000000610 INF: Z Motor: MoveAbsStepped took 272 ms)
17-03-17 22:47:07.328 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:47:07.328 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:47:07.328 -07 000000486 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:47:07.338 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:47:07.338 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:47:07.338 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:47:07.338 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:47:07.338 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:47:07.338 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 22:47:07.338 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:47:07.338 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 22:47:07.338 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:47:07.338 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:47:07.338 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:47:07.338 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:47:07.338 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:47:07.348 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 22:47:07.348 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 22:47:07.348 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 22:47:07.348 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 22:47:07.348 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 459 459 221 221 28272 150\n [Camera]
17-03-17 22:47:07.548 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:47:08.008 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 651
17-03-17 22:47:08.008 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 651
17-03-17 22:47:08.008 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:47:08.008 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 651
17-03-17 22:47:08.008 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 651
17-03-17 22:47:08.018 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:47:08.018 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-17 22:47:08.018 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:47:08.018 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:47:08.018 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-17 22:47:08.208 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28272 845
17-03-17 22:47:08.348 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP turning grn on 994
17-03-17 22:47:08.388 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 22:47:08.398 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-17 22:47:08.398 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:47:08.398 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 372 ms.
17-03-17 22:47:08.398 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-17 22:47:08.398 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:47:08.398 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:47:08.398 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 22:47:08.398 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:47:08.408 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 22:47:08.578 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1215
17-03-17 22:47:08.578 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1215
17-03-17 22:47:08.578 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:47:08.578 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1215
17-03-17 22:47:08.578 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1215
17-03-17 22:47:08.578 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:47:08.578 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:47:08.578 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) start.
17-03-17 22:47:08.588 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:47:08.588 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 22:47:08.768 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP 1408
17-03-17 22:47:08.768 -07 000000429 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:47:08.768 -07 000000610 INF: FPGA: 'CAMDBLSNAP 459 459 221 221 28272 150' command took 2 ms to send, 1402 ms to get response, and 1414 ms overall
17-03-17 22:47:08.768 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 22:47:08.768 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.349609375, Z-Position -0.12862343409829. ------
17-03-17 22:47:08.768 -07 000000458 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:47:08.768 -07 000000475 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.13519 mm
17-03-17 22:47:08.768 -07 000000475 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:47:08.778 -07 000000429 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:47:08.778 -07 000000458 INF: FPGA: 'FOCMRRCUR 80' command took 1 ms to send, 2 ms to get response, and 4 ms overall
17-03-17 22:47:08.778 -07 000000576 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-17 22:47:08.778 -07 000000576 INF: Y Motor: Moving to 73.1926 mm, started at 72.3496 mm, delta = 0.8430 mm
17-03-17 22:47:08.778 -07 000000458 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:47:08.778 -07 000000618 INF: Z Motor: Entering MoveAbsStepped (DAC = 29531, sync = True, waitForSettling = False)
17-03-17 22:47:08.778 -07 000000618 INF: Z Motor: Moving to -0.135184 mm, started at -0.128623 mm, distance = -6.56 um
17-03-17 22:47:08.788 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:47:08.788 -07 000000512 INF: FPGA: Recv YRDPOS 148173
17-03-17 22:47:08.798 -07 000000618 INF: FPGA: Xmit ZDACW 29531\n [Z Motor]
17-03-17 22:47:08.798 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-17 22:47:08.798 -07 000000576 INF: Y Motor: Encoder = 148173 = motor step 115760.2 = 72.3501 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:47:08.798 -07 000000512 INF: FPGA: Recv ZDACW
17-03-17 22:47:08.798 -07 000000576 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:47:08.798 -07 000000576 INF: Y Motor: Moving 1348 steps-27
17-03-17 22:47:08.808 -07 000000618 INF: FPGA: 'ZDACW 29531' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-17 22:47:08.808 -07 000000576 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:47:08.818 -07 000000618 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:47:08.818 -07 000000627 INF: FPGA: Recv ZDACR 29531
17-03-17 22:47:08.828 -07 000000618 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:47:08.828 -07 000000618 INF: Z Motor: MoveAbsStepped took 47 ms (did NOT wait for settling yet))
17-03-17 22:47:08.858 -07 000000429 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 67, FrontChillerTemperature: 3.962185,
17-03-17 22:47:08.978 -07 000000547 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:47:08.978 -07 000000458 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 202 ms overall
17-03-17 22:47:08.978 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) end. Duration was 396 ms.
17-03-17 22:47:08.978 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 22:47:08.978 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:47:08.978 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 395 ms.
17-03-17 22:47:08.978 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 22:47:08.978 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:47:08.988 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:47:08.988 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-17 22:47:08.988 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:47:08.988 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-17 22:47:09.178 -07 000000512 INF: FPGA: Recv YMVTILE
17-03-17 22:47:09.178 -07 000000576 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 382 ms overall
17-03-17 22:47:09.228 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:47:09.228 -07 000000618 INF: FPGA: Recv YRDPOS 149865
17-03-17 22:47:09.238 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:47:09.238 -07 000000576 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:47:09.238 -07 000000576 INF: Y Motor: Position error before settling (table move) = -33 encoder counts (-0.016 mm)
17-03-17 22:47:09.238 -07 000000576 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 382 ms, distance = 0.843 mm, average velocity = 2.207 mm/sec
17-03-17 22:47:10.188 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:47:10.188 -07 000000627 INF: FPGA: Recv YRDPOS 149865
17-03-17 22:47:10.198 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:47:10.198 -07 000000576 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:47:10.218 -07 000000576 INF: Y Motor: After move to 73.192604, error = -0.016335, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:47:10.218 -07 000000576 INF: Y Motor: Position error after settling (table move) = -33 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:47:10.218 -07 000000576 INF: Y Motor: Moved to 73.1763 after 1443 ms (table move)
17-03-17 22:47:10.218 -07 000000475 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135184 mm (DAC = 29531)
17-03-17 22:47:10.218 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:47:10.228 -07 000000486 INF: FPGA: Recv ZSGSRD 30338
17-03-17 22:47:10.228 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-17 22:47:10.228 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:47:10.228 -07 000000486 INF: FPGA: Recv ZSGSRD 30335
17-03-17 22:47:10.238 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:47:10.238 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:47:10.238 -07 000000486 INF: FPGA: Recv ZSGSRD 30334
17-03-17 22:47:10.248 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:47:10.248 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:47:10.248 -07 000000576 INF: FPGA: Recv ZSGSRD 30333
17-03-17 22:47:10.258 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:47:10.258 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:47:10.258 -07 000000486 INF: FPGA: Recv ZSGSRD 30338
17-03-17 22:47:10.268 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:47:10.268 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:47:10.268 -07 000000486 INF: FPGA: Recv ZSGSRD 30338
17-03-17 22:47:10.278 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:47:10.278 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:47:10.278 -07 000000576 INF: FPGA: Recv ZSGSRD 30338
17-03-17 22:47:10.288 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:47:10.288 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:47:10.288 -07 000000547 INF: FPGA: Recv ZSGSRD 30333
17-03-17 22:47:10.298 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:47:10.298 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:47:10.298 -07 000000576 INF: FPGA: Recv ZSGSRD 30327
17-03-17 22:47:10.308 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:47:10.308 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:47:10.308 -07 000000576 INF: FPGA: Recv ZSGSRD 30329
17-03-17 22:47:10.318 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:47:10.318 -07 000000475 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:47:10.318 -07 000000576 INF: FPGA: Recv ZPIEZORD 26291
17-03-17 22:47:10.328 -07 000000475 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:47:10.328 -07 000000475 INF: Z Motor: Piezo is near 36.2 V (nominally 0 to 100 V), expect near 45.1 V, since DAC is at 4.506 V. Piezo Error = -8.9 V.
17-03-17 22:47:10.328 -07 000000475 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.2 um, Read 10 ADC samples: Avg = 30334 (-134.4 uncal um), Error = 0.8 uncal um, Median = 30334 (-134.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30327 (-134.4 uncal um), Max = 30338 (-134.4 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 22:47:10.328 -07 000000475 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30334, posNoise = 4, negNoise = 7
17-03-17 22:47:10.328 -07 000000475 INF: Z Motor: After move to -0.135184, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:47:10.328 -07 000000475 INF: Z Motor: Settle wait time = 1446 ms, measure time = 103 ms (allowed 150 ms), total time = 1549 ms
17-03-17 22:47:10.328 -07 000000475 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 22:47:10.378 -07 000000475 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1600 ms
17-03-17 22:47:10.378 -07 000000475 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:47:10.378 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:47:10.378 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:47:10.378 -07 000000486 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:47:10.378 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:47:10.378 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:47:10.378 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:47:10.378 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:47:10.378 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:47:10.388 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-17 22:47:10.388 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:47:10.398 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 22:47:10.398 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-17 22:47:10.398 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:47:10.448 -07 000000475 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:47:10.648 -07 000000576 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:47:10.648 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:47:10.648 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:47:10.758 -07 000000475 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:47:10.758 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2199785120, 0x0, 559484976) start.
17-03-17 22:47:10.758 -07 000000475 INF: FPGA: Recv CAMSNAP
17-03-17 22:47:10.758 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 342 ms to get response, and 353 ms overall
17-03-17 22:47:10.868 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2199785120, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 22:47:10.868 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:47:10.868 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:47:10.868 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 223 ms.
17-03-17 22:47:10.958 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:47:10.958 -07 000000627 INF: Autofocus start
17-03-17 22:47:10.958 -07 000000627 INF: MeasureProfile start
17-03-17 22:47:10.958 -07 000000478 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:47:10.968 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:47:10.968 -07 000000618 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:47:10.968 -07 000000627 INF: MeasureProfile done
17-03-17 22:47:10.968 -07 000000627 INF: X=-16  Z correction [um]=-0.08128808
17-03-17 22:47:10.968 -07 000000627 INF: Autofocus finished
17-03-17 22:47:11.168 -07 000000547 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:47:11.168 -07 000000618 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:47:11.168 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.17626953125, Z-position -0.135195403119312. ----------
17-03-17 22:47:11.178 -07 000000610 INF: Cycle	67	Tile	17	Exposure Settings		A	459	G	221	T	221	C	459
17-03-17 22:47:11.178 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28026, sync = True, waitForSettling = True)
17-03-17 22:47:11.178 -07 000000610 INF: Z Motor: Moving to -0.128295 mm, started at -0.135195 mm, distance = 6.90 um
17-03-17 22:47:11.178 -07 000000610 INF: FPGA: Xmit ZDACW 28026\n [Z Motor]
17-03-17 22:47:11.178 -07 000000478 INF: FPGA: Recv ZDACW
17-03-17 22:47:11.188 -07 000000610 INF: FPGA: 'ZDACW 28026' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:47:11.188 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:47:11.188 -07 000000475 INF: FPGA: Recv ZDACR 28026
17-03-17 22:47:11.198 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:47:11.198 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:47:11.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:47:11.348 -07 000000627 INF: FPGA: Recv ZSGSRD 29260
17-03-17 22:47:11.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:47:11.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:47:11.358 -07 000000576 INF: FPGA: Recv ZSGSRD 29259
17-03-17 22:47:11.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:47:11.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:47:11.368 -07 000000627 INF: FPGA: Recv ZSGSRD 29263
17-03-17 22:47:11.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:47:11.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:47:11.378 -07 000000618 INF: FPGA: Recv ZSGSRD 29255
17-03-17 22:47:11.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:47:11.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:47:11.388 -07 000000627 INF: FPGA: Recv ZSGSRD 29265
17-03-17 22:47:11.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:47:11.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:47:11.398 -07 000000475 INF: FPGA: Recv ZSGSRD 29259
17-03-17 22:47:11.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:47:11.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:47:11.408 -07 000000576 INF: FPGA: Recv ZSGSRD 29266
17-03-17 22:47:11.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:47:11.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:47:11.418 -07 000000618 INF: FPGA: Recv ZSGSRD 29260
17-03-17 22:47:11.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:47:11.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:47:11.428 -07 000000627 INF: FPGA: Recv ZSGSRD 29258
17-03-17 22:47:11.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:47:11.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:47:11.438 -07 000000486 INF: FPGA: Recv ZSGSRD 29259
17-03-17 22:47:11.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:47:11.448 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:47:11.448 -07 000000478 INF: FPGA: Recv ZPIEZORD 24899
17-03-17 22:47:11.458 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:47:11.458 -07 000000610 INF: Z Motor: Piezo is near 33.2 V (nominally 0 to 100 V), expect near 42.8 V, since DAC is at 4.276 V. Piezo Error = -9.6 V.
17-03-17 22:47:11.458 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.3 um, Read 10 ADC samples: Avg = 29260 (-127.5 uncal um), Error = 0.8 uncal um, Median = 29260 (-127.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29255 (-127.5 uncal um), Max = 29266 (-127.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 22:47:11.458 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29260, posNoise = 6, negNoise = 5
17-03-17 22:47:11.458 -07 000000610 INF: Z Motor: After move to -0.128295, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:47:11.458 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 22:47:11.458 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:47:11.458 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:47:11.458 -07 000000478 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:47:11.458 -07 000000475 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:47:11.458 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:47:11.458 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:47:11.458 -07 000000547 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:47:11.458 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:47:11.458 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:47:11.458 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:47:11.458 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:47:11.458 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:47:11.468 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 22:47:11.468 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:47:11.468 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:47:11.468 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:47:11.478 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 22:47:11.478 -07 000000475 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 22:47:11.478 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 22:47:11.478 -07 000000547 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 22:47:11.478 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 459 459 221 221 28203 150\n [Camera]
17-03-17 22:47:11.678 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:47:12.008 -07 000000478 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:47:12.008 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 66. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1047, R2=1076, Total=2123. Warn if over 250 bubbles per interval.
17-03-17 22:47:12.138 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 651
17-03-17 22:47:12.138 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 651
17-03-17 22:47:12.138 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:47:12.138 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 651
17-03-17 22:47:12.138 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 651
17-03-17 22:47:12.138 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:47:12.138 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:47:12.138 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 583729424, 0x0, 391868352) start.
17-03-17 22:47:12.148 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:47:12.148 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-17 22:47:12.328 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28203 844
17-03-17 22:47:12.478 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP turning grn on 994
17-03-17 22:47:12.518 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 376 ms.
17-03-17 22:47:12.518 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 22:47:12.518 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:47:12.528 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 583729424, 0x0, 391868352) end. Duration was 382 ms.
17-03-17 22:47:12.528 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 22:47:12.528 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:47:12.528 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:47:12.528 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:47:12.528 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 22:47:12.528 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 22:47:12.698 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1215
17-03-17 22:47:12.698 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1215
17-03-17 22:47:12.698 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:47:12.708 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1215
17-03-17 22:47:12.708 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1215
17-03-17 22:47:12.708 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:47:12.708 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start.
17-03-17 22:47:12.708 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:47:12.708 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:47:12.708 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 22:47:12.888 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP 1408
17-03-17 22:47:12.888 -07 000000475 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:47:12.888 -07 000000610 INF: FPGA: 'CAMDBLSNAP 459 459 221 221 28203 150' command took 2 ms to send, 1407 ms to get response, and 1415 ms overall
17-03-17 22:47:12.888 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 22:47:12.888 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.17626953125, Z-Position -0.128295799279061. ------
17-03-17 22:47:12.898 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:47:12.898 -07 000000547 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.13474 mm
17-03-17 22:47:12.898 -07 000000547 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:47:12.898 -07 000000475 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-17 22:47:12.898 -07 000000475 INF: Y Motor: Moving to 74.0226 mm, started at 73.1763 mm, delta = 0.8463 mm
17-03-17 22:47:12.898 -07 000000486 INF: Z Motor: Entering MoveAbsStepped (DAC = 29434, sync = True, waitForSettling = False)
17-03-17 22:47:12.898 -07 000000486 INF: Z Motor: Moving to -0.134740 mm, started at -0.128296 mm, distance = -6.44 um
17-03-17 22:47:12.908 -07 000000482 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:47:12.908 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:47:12.908 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 22:47:12.908 -07 000000501 INF: FPGA: Recv YRDPOS 149865
17-03-17 22:47:12.918 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 22:47:12.918 -07 000000486 INF: FPGA: Xmit ZDACW 29434\n [Z Motor]
17-03-17 22:47:12.918 -07 000000475 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:47:12.918 -07 000000475 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:47:12.918 -07 000000475 INF: Y Motor: Moving 1354 steps-33
17-03-17 22:47:12.918 -07 000000512 INF: FPGA: Recv ZDACW
17-03-17 22:47:12.928 -07 000000576 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:47:12.928 -07 000000486 INF: FPGA: 'ZDACW 29434' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-17 22:47:12.938 -07 000000475 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:47:12.948 -07 000000486 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:47:12.948 -07 000000482 INF: FPGA: Recv ZDACR 29434
17-03-17 22:47:12.958 -07 000000486 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:47:12.958 -07 000000486 INF: Z Motor: MoveAbsStepped took 52 ms (did NOT wait for settling yet))
17-03-17 22:47:13.108 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 398 ms.
17-03-17 22:47:13.108 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 22:47:13.108 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:47:13.108 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 395 ms.
17-03-17 22:47:13.108 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 22:47:13.108 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:47:13.108 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:47:13.108 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-17 22:47:13.108 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:47:13.118 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-17 22:47:13.128 -07 000000501 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:47:13.128 -07 000000576 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 22:47:13.308 -07 000000551 INF: FPGA: Recv YMVTILE
17-03-17 22:47:13.308 -07 000000475 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 22:47:13.338 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:47:13.348 -07 000000512 INF: FPGA: Recv YRDPOS 151569
17-03-17 22:47:13.358 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:47:13.358 -07 000000475 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:47:13.358 -07 000000475 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-17 22:47:13.358 -07 000000475 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.846 mm, average velocity = 2.132 mm/sec
17-03-17 22:47:14.228 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 67, FrontChillerTemperature: 4.015368,
17-03-17 22:47:14.308 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:47:14.308 -07 000000501 INF: FPGA: Recv YRDPOS 151569
17-03-17 22:47:14.318 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:47:14.318 -07 000000475 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:47:14.328 -07 000000475 INF: Y Motor: After move to 74.022606, error = -0.014305, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:47:14.328 -07 000000475 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:47:14.328 -07 000000475 INF: Y Motor: Moved to 74.0083 after 1431 ms (table move)
17-03-17 22:47:14.338 -07 000000547 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134740 mm (DAC = 29434)
17-03-17 22:47:14.338 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:47:14.338 -07 000000478 INF: FPGA: Recv ZSGSRD 30270
17-03-17 22:47:14.348 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:47:14.348 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:47:14.348 -07 000000475 INF: FPGA: Recv ZSGSRD 30263
17-03-17 22:47:14.358 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:47:14.358 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:47:14.358 -07 000000478 INF: FPGA: Recv ZSGSRD 30263
17-03-17 22:47:14.368 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:47:14.368 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:47:14.368 -07 000000475 INF: FPGA: Recv ZSGSRD 30274
17-03-17 22:47:14.378 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:47:14.378 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:47:14.378 -07 000000475 INF: FPGA: Recv ZSGSRD 30268
17-03-17 22:47:14.388 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:47:14.388 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:47:14.388 -07 000000478 INF: FPGA: Recv ZSGSRD 30259
17-03-17 22:47:14.398 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:47:14.398 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:47:14.398 -07 000000475 INF: FPGA: Recv ZSGSRD 30265
17-03-17 22:47:14.408 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:47:14.408 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:47:14.408 -07 000000475 INF: FPGA: Recv ZSGSRD 30259
17-03-17 22:47:14.418 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:47:14.418 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:47:14.418 -07 000000512 INF: FPGA: Recv ZSGSRD 30258
17-03-17 22:47:14.428 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:47:14.428 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:47:14.428 -07 000000478 INF: FPGA: Recv ZSGSRD 30261
17-03-17 22:47:14.438 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:47:14.438 -07 000000547 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:47:14.438 -07 000000475 INF: FPGA: Recv ZPIEZORD 26222
17-03-17 22:47:14.448 -07 000000547 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:47:14.448 -07 000000547 INF: Z Motor: Piezo is near 36.0 V (nominally 0 to 100 V), expect near 44.9 V, since DAC is at 4.491 V. Piezo Error = -8.9 V.
17-03-17 22:47:14.448 -07 000000547 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.7 um, Read 10 ADC samples: Avg = 30264 (-134.0 uncal um), Error = 0.8 uncal um, Median = 30263 (-133.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 30258 (-133.9 uncal um), Max = 30274 (-134.0 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 22:47:14.448 -07 000000547 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30264, posNoise = 10, negNoise = 6
17-03-17 22:47:14.448 -07 000000547 INF: Z Motor: After move to -0.134740, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:47:14.448 -07 000000547 INF: Z Motor: Settle wait time = 1434 ms, measure time = 108 ms (allowed 150 ms), total time = 1542 ms
17-03-17 22:47:14.448 -07 000000547 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-17 22:47:14.498 -07 000000547 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1595 ms
17-03-17 22:47:14.498 -07 000000547 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:47:14.498 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:47:14.498 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:47:14.498 -07 000000478 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:47:14.498 -07 000000551 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:47:14.498 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:47:14.498 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:47:14.498 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:47:14.508 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:47:14.508 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:47:14.508 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:47:14.518 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 22:47:14.518 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 22:47:14.518 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:47:14.568 -07 000000486 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:47:14.768 -07 000000551 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:47:14.768 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:47:14.768 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:47:14.768 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1165594328, 0x0, 559484976) start.
17-03-17 22:47:14.808 -07 000000482 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:47:14.808 -07 000000627 INF: FPGA: Recv CAMSNAP
17-03-17 22:47:14.808 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 284 ms overall
17-03-17 22:47:14.878 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1165594328, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 22:47:14.878 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:47:14.888 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 22:47:14.888 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 22:47:14.908 -07 000000618 INF: Autofocus start
17-03-17 22:47:14.908 -07 000000618 INF: MeasureProfile start
17-03-17 22:47:14.908 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:47:14.908 -07 000000478 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:47:14.918 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 22:47:14.918 -07 000000576 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:47:14.928 -07 000000618 INF: MeasureProfile done
17-03-17 22:47:14.928 -07 000000618 INF: X=-32  Z correction [um]=-0.1591732
17-03-17 22:47:14.928 -07 000000618 INF: Autofocus finished
17-03-17 22:47:15.118 -07 000000501 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:47:15.118 -07 000000576 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:47:15.118 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.00830078125, Z-position -0.134745708269389. ----------
17-03-17 22:47:15.118 -07 000000610 INF: Cycle	67	Tile	18	Exposure Settings		A	459	G	221	T	221	C	459
17-03-17 22:47:15.128 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27911, sync = True, waitForSettling = True)
17-03-17 22:47:15.128 -07 000000610 INF: Z Motor: Moving to -0.127768 mm, started at -0.134746 mm, distance = 6.98 um
17-03-17 22:47:15.128 -07 000000610 INF: FPGA: Xmit ZDACW 27911\n [Z Motor]
17-03-17 22:47:15.128 -07 000000627 INF: FPGA: Recv ZDACW
17-03-17 22:47:15.138 -07 000000610 INF: FPGA: 'ZDACW 27911' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:47:15.138 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:47:15.138 -07 000000501 INF: FPGA: Recv ZDACR 27911
17-03-17 22:47:15.148 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:47:15.148 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:47:15.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:47:15.298 -07 000000501 INF: FPGA: Recv ZSGSRD 29175
17-03-17 22:47:15.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:47:15.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:47:15.308 -07 000000501 INF: FPGA: Recv ZSGSRD 29178
17-03-17 22:47:15.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:47:15.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:47:15.318 -07 000000501 INF: FPGA: Recv ZSGSRD 29182
17-03-17 22:47:15.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:47:15.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:47:15.328 -07 000000512 INF: FPGA: Recv ZSGSRD 29183
17-03-17 22:47:15.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:47:15.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:47:15.338 -07 000000547 INF: FPGA: Recv ZSGSRD 29182
17-03-17 22:47:15.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:47:15.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:47:15.348 -07 000000547 INF: FPGA: Recv ZSGSRD 29179
17-03-17 22:47:15.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:47:15.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:47:15.358 -07 000000547 INF: FPGA: Recv ZSGSRD 29174
17-03-17 22:47:15.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:47:15.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:47:15.368 -07 000000512 INF: FPGA: Recv ZSGSRD 29180
17-03-17 22:47:15.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:47:15.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:47:15.378 -07 000000512 INF: FPGA: Recv ZSGSRD 29175
17-03-17 22:47:15.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:47:15.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:47:15.388 -07 000000512 INF: FPGA: Recv ZSGSRD 29181
17-03-17 22:47:15.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:47:15.398 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:47:15.398 -07 000000501 INF: FPGA: Recv ZPIEZORD 24805
17-03-17 22:47:15.408 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:47:15.408 -07 000000610 INF: Z Motor: Piezo is near 33.0 V (nominally 0 to 100 V), expect near 42.6 V, since DAC is at 4.259 V. Piezo Error = -9.6 V.
17-03-17 22:47:15.408 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.8 um, Read 10 ADC samples: Avg = 29179 (-127.0 uncal um), Error = 0.8 uncal um, Median = 29180 (-127.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29174 (-127.0 uncal um), Max = 29183 (-127.0 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 22:47:15.408 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29179, posNoise = 4, negNoise = 5
17-03-17 22:47:15.408 -07 000000610 INF: Z Motor: After move to -0.127768, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:47:15.408 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 22:47:15.408 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:47:15.408 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:47:15.408 -07 000000547 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:47:15.408 -07 000000482 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:47:15.408 -07 000000627 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:47:15.408 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:47:15.408 -07 000000478 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:47:15.408 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:47:15.408 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:47:15.408 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:47:15.408 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:47:15.408 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:47:15.418 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:47:15.418 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:47:15.418 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:47:15.418 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:47:15.418 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 22:47:15.428 -07 000000627 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 22:47:15.428 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 22:47:15.428 -07 000000478 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 22:47:15.428 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 459 459 221 221 28088 150\n [Camera]
17-03-17 22:47:15.628 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:47:16.088 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 651
17-03-17 22:47:16.088 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 651
17-03-17 22:47:16.088 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:47:16.088 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 651
17-03-17 22:47:16.088 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 651
17-03-17 22:47:16.088 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:47:16.088 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:47:16.088 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 22:47:16.088 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:47:16.088 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-17 22:47:16.278 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28088 844
17-03-17 22:47:16.428 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP turning grn on 994
17-03-17 22:47:16.468 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 372 ms.
17-03-17 22:47:16.468 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-17 22:47:16.468 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:47:16.468 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:47:16.468 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 375 ms.
17-03-17 22:47:16.468 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 375 ms.
17-03-17 22:47:16.468 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:47:16.468 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:47:16.468 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 22:47:16.478 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-17 22:47:16.648 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1215
17-03-17 22:47:16.648 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1215
17-03-17 22:47:16.648 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:47:16.758 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1215
17-03-17 22:47:16.758 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1215
17-03-17 22:47:16.758 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:47:16.768 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:47:16.768 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 22:47:16.768 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:47:16.768 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-17 22:47:16.838 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP 1408
17-03-17 22:47:16.838 -07 000000547 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:47:16.838 -07 000000610 INF: FPGA: 'CAMDBLSNAP 459 459 221 221 28088 150' command took 2 ms to send, 1409 ms to get response, and 1415 ms overall
17-03-17 22:47:16.848 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 22:47:16.848 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.00830078125, Z-Position -0.127775438095578. ------
17-03-17 22:47:16.848 -07 000000482 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:47:16.848 -07 000000627 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.13422 mm
17-03-17 22:47:16.848 -07 000000627 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:47:16.848 -07 000000618 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-17 22:47:16.848 -07 000000547 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:47:16.848 -07 000000478 INF: Z Motor: Entering MoveAbsStepped (DAC = 29321, sync = True, waitForSettling = False)
17-03-17 22:47:16.848 -07 000000478 INF: Z Motor: Moving to -0.134223 mm, started at -0.127775 mm, distance = -6.45 um
17-03-17 22:47:16.848 -07 000000618 INF: Y Motor: Moving to 74.8526 mm, started at 74.0083 mm, delta = 0.8443 mm
17-03-17 22:47:16.858 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:47:16.858 -07 000000482 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:47:16.858 -07 000000576 INF: FPGA: Recv YRDPOS 151570
17-03-17 22:47:16.868 -07 000000478 INF: FPGA: Xmit ZDACW 29321\n [Z Motor]
17-03-17 22:47:16.868 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 22:47:16.868 -07 000000618 INF: Y Motor: Encoder = 151570 = motor step 118414.1 = 74.0088 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:47:16.868 -07 000000547 INF: FPGA: Recv ZDACW
17-03-17 22:47:16.868 -07 000000618 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:47:16.868 -07 000000618 INF: Y Motor: Moving 1350 steps-29
17-03-17 22:47:16.878 -07 000000482 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:47:16.878 -07 000000478 INF: FPGA: 'ZDACW 29321' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-17 22:47:16.888 -07 000000618 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:47:16.898 -07 000000478 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:47:16.898 -07 000000576 INF: FPGA: Recv ZDACR 29321
17-03-17 22:47:16.908 -07 000000478 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:47:16.908 -07 000000478 INF: Z Motor: MoveAbsStepped took 52 ms (did NOT wait for settling yet))
17-03-17 22:47:17.008 -07 000000547 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:47:17.008 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 66. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1047, R2=1076, Total=2123. Warn if over 250 bubbles per interval.
17-03-17 22:47:17.078 -07 000000576 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:47:17.078 -07 000000482 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 22:47:17.168 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 397 ms.
17-03-17 22:47:17.168 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 22:47:17.168 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:47:17.168 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 398 ms.
17-03-17 22:47:17.168 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 22:47:17.168 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:47:17.168 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:47:17.168 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:47:17.168 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 518 ms.
17-03-17 22:47:17.178 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-17 22:47:17.258 -07 000000478 INF: FPGA: Recv YMVTILE
17-03-17 22:47:17.258 -07 000000618 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 390 ms overall
17-03-17 22:47:17.288 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:47:17.288 -07 000000551 INF: FPGA: Recv YRDPOS 153256
17-03-17 22:47:17.298 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:47:17.298 -07 000000618 INF: Y Motor: Encoder = 153256 = motor step 119731.3 = 74.8320 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:47:17.298 -07 000000618 INF: Y Motor: Position error before settling (table move) = -42 encoder counts (-0.021 mm)
17-03-17 22:47:17.298 -07 000000618 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 391 ms, distance = 0.844 mm, average velocity = 2.159 mm/sec
17-03-17 22:47:18.248 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:47:18.248 -07 000000486 INF: FPGA: Recv YRDPOS 153257
17-03-17 22:47:18.258 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:47:18.258 -07 000000618 INF: Y Motor: Encoder = 153257 = motor step 119732.0 = 74.8325 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:47:18.268 -07 000000618 INF: Y Motor: After move to 74.852608, error = -0.020088, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:47:18.268 -07 000000618 INF: Y Motor: Position error after settling (table move) = -41 encoder counts (-0.020 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 22:47:18.268 -07 000000618 INF: Y Motor: Moved to 74.8325 after 1420 ms (table move)
17-03-17 22:47:18.278 -07 000000627 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134223 mm (DAC = 29321)
17-03-17 22:47:18.278 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:47:18.278 -07 000000547 INF: FPGA: Recv ZSGSRD 30193
17-03-17 22:47:18.288 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:47:18.288 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:47:18.288 -07 000000551 INF: FPGA: Recv ZSGSRD 30182
17-03-17 22:47:18.298 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:47:18.298 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:47:18.298 -07 000000576 INF: FPGA: Recv ZSGSRD 30173
17-03-17 22:47:18.308 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:47:18.308 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:47:18.308 -07 000000478 INF: FPGA: Recv ZSGSRD 30177
17-03-17 22:47:18.318 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:47:18.318 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:47:18.318 -07 000000618 INF: FPGA: Recv ZSGSRD 30180
17-03-17 22:47:18.328 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:47:18.328 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:47:18.328 -07 000000482 INF: FPGA: Recv ZSGSRD 30185
17-03-17 22:47:18.338 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:47:18.338 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:47:18.338 -07 000000501 INF: FPGA: Recv ZSGSRD 30191
17-03-17 22:47:18.348 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:47:18.348 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:47:18.348 -07 000000482 INF: FPGA: Recv ZSGSRD 30185
17-03-17 22:47:18.358 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:47:18.358 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:47:18.358 -07 000000547 INF: FPGA: Recv ZSGSRD 30183
17-03-17 22:47:18.368 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:47:18.368 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:47:18.368 -07 000000478 INF: FPGA: Recv ZSGSRD 30178
17-03-17 22:47:18.378 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:47:18.378 -07 000000627 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:47:18.378 -07 000000618 INF: FPGA: Recv ZPIEZORD 26132
17-03-17 22:47:18.388 -07 000000627 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:47:18.388 -07 000000627 INF: Z Motor: Piezo is near 35.8 V (nominally 0 to 100 V), expect near 44.7 V, since DAC is at 4.474 V. Piezo Error = -8.9 V.
17-03-17 22:47:18.388 -07 000000627 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.2 um, Read 10 ADC samples: Avg = 30183 (-133.4 uncal um), Error = 0.8 uncal um, Median = 30182 (-133.4 uncal um), StdDev = 6 (0.0 uncal um), Range = 20 (0.1 uncal um), Min = 30173 (-133.4 uncal um), Max = 30193 (-133.5 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-17 22:47:18.388 -07 000000627 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30183, posNoise = 10, negNoise = 10
17-03-17 22:47:18.388 -07 000000627 INF: Z Motor: After move to -0.134223, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:47:18.388 -07 000000627 INF: Z Motor: Settle wait time = 1424 ms, measure time = 109 ms (allowed 150 ms), total time = 1533 ms
17-03-17 22:47:18.388 -07 000000627 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-17 22:47:18.438 -07 000000627 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1586 ms
17-03-17 22:47:18.438 -07 000000627 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:47:18.438 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:47:18.438 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:47:18.438 -07 000000478 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:47:18.438 -07 000000547 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:47:18.438 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:47:18.438 -07 000000551 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:47:18.438 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:47:18.438 -07 000000547 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:47:18.448 -07 000000547 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:47:18.448 -07 000000547 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:47:18.458 -07 000000547 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 22:47:18.458 -07 000000547 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 22:47:18.458 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:47:18.508 -07 000000576 INF: FPGA: Recv @CAMSNAP turning led on 42
17-03-17 22:47:18.708 -07 000000478 INF: FPGA: Recv @CAMSNAP img rdy 242
17-03-17 22:47:18.708 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 242
17-03-17 22:47:18.708 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:47:18.708 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1130172064, 0x0, 559484976) start.
17-03-17 22:47:18.738 -07 000000501 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:47:18.748 -07 000000576 INF: FPGA: Recv CAMSNAP
17-03-17 22:47:18.748 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 284 ms overall
17-03-17 22:47:18.828 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1130172064, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 22:47:18.828 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:47:18.828 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:47:18.828 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 22:47:18.848 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:47:18.848 -07 000000547 INF: Autofocus start
17-03-17 22:47:18.848 -07 000000547 INF: MeasureProfile start
17-03-17 22:47:18.858 -07 000000627 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:47:18.858 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:47:18.858 -07 000000576 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:47:18.868 -07 000000547 INF: MeasureProfile done
17-03-17 22:47:18.868 -07 000000547 INF: X=16  Z correction [um]=0.0530179
17-03-17 22:47:18.868 -07 000000547 INF: Autofocus finished
17-03-17 22:47:19.058 -07 000000478 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:47:19.058 -07 000000576 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:47:19.058 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83251953125, Z-position -0.134225347085906. ----------
17-03-17 22:47:19.068 -07 000000610 INF: Cycle	67	Tile	19	Exposure Settings		A	459	G	221	T	221	C	459
17-03-17 22:47:19.068 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27845, sync = True, waitForSettling = True)
17-03-17 22:47:19.068 -07 000000610 INF: Z Motor: Moving to -0.127466 mm, started at -0.134225 mm, distance = 6.76 um
17-03-17 22:47:19.068 -07 000000610 INF: FPGA: Xmit ZDACW 27845\n [Z Motor]
17-03-17 22:47:19.068 -07 000000627 INF: FPGA: Recv ZDACW
17-03-17 22:47:19.078 -07 000000610 INF: FPGA: 'ZDACW 27845' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:47:19.078 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:47:19.078 -07 000000482 INF: FPGA: Recv ZDACR 27845
17-03-17 22:47:19.088 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:47:19.088 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:47:19.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:47:19.238 -07 000000486 INF: FPGA: Recv ZSGSRD 29136
17-03-17 22:47:19.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:47:19.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:47:19.248 -07 000000627 INF: FPGA: Recv ZSGSRD 29130
17-03-17 22:47:19.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:47:19.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:47:19.258 -07 000000618 INF: FPGA: Recv ZSGSRD 29129
17-03-17 22:47:19.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:47:19.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:47:19.268 -07 000000482 INF: FPGA: Recv ZSGSRD 29128
17-03-17 22:47:19.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:47:19.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:47:19.288 -07 000000576 INF: FPGA: Recv ZSGSRD 29142
17-03-17 22:47:19.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:47:19.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:47:19.298 -07 000000478 INF: FPGA: Recv ZSGSRD 29122
17-03-17 22:47:19.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:47:19.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:47:19.308 -07 000000547 INF: FPGA: Recv ZSGSRD 29128
17-03-17 22:47:19.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:47:19.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:47:19.318 -07 000000627 INF: FPGA: Recv ZSGSRD 29137
17-03-17 22:47:19.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:47:19.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:47:19.328 -07 000000551 INF: FPGA: Recv ZSGSRD 29128
17-03-17 22:47:19.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:47:19.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:47:19.338 -07 000000576 INF: FPGA: Recv ZSGSRD 29138
17-03-17 22:47:19.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:47:19.348 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:47:19.348 -07 000000482 INF: FPGA: Recv ZPIEZORD 24712
17-03-17 22:47:19.358 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:47:19.358 -07 000000610 INF: Z Motor: Piezo is near 32.8 V (nominally 0 to 100 V), expect near 42.5 V, since DAC is at 4.249 V. Piezo Error = -9.7 V.
17-03-17 22:47:19.358 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.5 um, Read 10 ADC samples: Avg = 29132 (-126.7 uncal um), Error = 0.8 uncal um, Median = 29130 (-126.7 uncal um), StdDev = 6 (0.0 uncal um), Range = 20 (0.1 uncal um), Min = 29122 (-126.6 uncal um), Max = 29142 (-126.8 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-17 22:47:19.358 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29132, posNoise = 10, negNoise = 10
17-03-17 22:47:19.358 -07 000000610 INF: Z Motor: After move to -0.127466, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:47:19.358 -07 000000610 INF: Z Motor: MoveAbsStepped took 288 ms)
17-03-17 22:47:19.358 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:47:19.358 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:47:19.358 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:47:19.358 -07 000000482 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:47:19.358 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:47:19.358 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:47:19.358 -07 000000547 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:47:19.358 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:47:19.358 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 22:47:19.358 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:47:19.358 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:47:19.358 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:47:19.368 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 22:47:19.368 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:47:19.368 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 22:47:19.368 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:47:19.368 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 22:47:19.368 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 12 ms.
17-03-17 22:47:19.368 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 22:47:19.368 -07 000000547 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 22:47:19.378 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 459 459 221 221 28022 150\n [Camera]
17-03-17 22:47:19.578 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:47:19.608 -07 000000478 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 67, FrontChillerTemperature: 4.020806,
17-03-17 22:47:20.038 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 651
17-03-17 22:47:20.038 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 651
17-03-17 22:47:20.038 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 651
17-03-17 22:47:20.038 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:47:20.038 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 651
17-03-17 22:47:20.038 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:47:20.148 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:47:20.148 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 22:47:20.158 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:47:20.158 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-17 22:47:20.228 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28022 844
17-03-17 22:47:20.378 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP turning grn on 994
17-03-17 22:47:20.528 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 379 ms.
17-03-17 22:47:20.528 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-17 22:47:20.528 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:47:20.528 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 376 ms.
17-03-17 22:47:20.528 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 22:47:20.528 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:47:20.538 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:47:20.538 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 498 ms.
17-03-17 22:47:20.538 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:47:20.538 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 505 ms.
17-03-17 22:47:20.598 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1216
17-03-17 22:47:20.598 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1216
17-03-17 22:47:20.598 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:47:20.608 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1216
17-03-17 22:47:20.608 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1216
17-03-17 22:47:20.608 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:47:20.608 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:47:20.608 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-17 22:47:20.608 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:47:20.608 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 1144848144, 0x0, 418435064) start.
17-03-17 22:47:20.788 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP 1408
17-03-17 22:47:20.788 -07 000000501 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:47:20.788 -07 000000610 INF: FPGA: 'CAMDBLSNAP 459 459 221 221 28022 150' command took 2 ms to send, 1406 ms to get response, and 1415 ms overall
17-03-17 22:47:21.008 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 401 ms.
17-03-17 22:47:21.008 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 22:47:21.008 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:47:21.008 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 1144848144, 0x0, 418435064) end. Duration was 400 ms.
17-03-17 22:47:21.008 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 22:47:21.008 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:47:21.008 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:47:21.008 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-17 22:47:21.008 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-17 22:47:21.018 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:47:21.018 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-17 22:47:21.058 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 42 ms.
17-03-17 22:47:21.058 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-17 22:47:21.098 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 42 ms.
17-03-17 22:47:21.108 -07 000000610 INF: Enabling Skipping AutoFocus in the next 1 cycles.
17-03-17 22:47:21.108 -07 000000610 INF: Imaging Cycle 67: ScanTilesCommand Cycle 67 time end. Duration was 169485 ms.
17-03-17 22:47:21.108 -07 000000610 INF: =================== Cycle #67 ===================
17-03-17 22:47:21.108 -07 000000610 INF: ===================  ===================
17-03-17 22:47:21.108 -07 000000486 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-17 22:47:21.118 -07 000000618 INF: FPGA: Recv EXLED1ADCR 24
17-03-17 22:47:21.118 -07 000000486 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 22:47:21.118 -07 000000486 INF: GreenLED: Using Green data: Photodiode ADC 24 --> 0.0 mW (old method), or 1.7 mW (new method). Difference = 1.7 mW
17-03-17 22:47:21.118 -07 000000486 INF: Predictive Diagnostic Log Cycle Entry Metrics: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 67, FrontChillerTemperature: 4.020806, FrontChillerHeatSinkTemperature: 0.599062, AmbientTemperature: 18.83892, FlowCellCompartmentTemperature: 21.99255, FlowCellTargetTemperature: 22, FlowCellHeatSinkTemperature: 18.47575, GreenLEDSensorTemperature: 26.57584, PhotodiodePowerAdcGreen: 24, PhotodiodePowerMwGreen: 1.744678
17-03-17 22:47:21.158 -07 000000610 INF: Y-Drift Offset assigned 0.002126916.