17-03-17 22:47:21.218 -07 000000610 INF: =================== Cycle #68 ===================
17-03-17 22:47:21.218 -07 000000610 INF: Y Motor: Entering MoveAbsStepped (target = 120609 steps, sync = True, waitForSettling = True)
17-03-17 22:47:21.218 -07 000000610 INF: Y Motor: Moving to 75.3806 mm, started at 74.8325 mm, delta = 0.5481 mm
17-03-17 22:47:21.218 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:47:21.218 -07 000000551 INF: FPGA: Recv YRDPOS 153257
17-03-17 22:47:21.228 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:47:21.228 -07 000000610 INF: Y Motor: Encoder = 153257 = motor step 119732.0 = 74.8325 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:47:21.228 -07 000000610 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = 0.5280 mm (844.8 steps). UsingTableMove = False
17-03-17 22:47:21.228 -07 000000610 INF: Y Motor: Moving to 154379 encoder counts
17-03-17 22:47:21.228 -07 000000610 INF: FPGA: Xmit YMVTO 154379\n [Y Motor]
17-03-17 22:47:21.338 -07 000000627 INF: FPGA: Recv YMVTO 154377 870
17-03-17 22:47:21.338 -07 000000610 INF: FPGA: 'YMVTO 154379' command took 0 ms to send, 106 ms to get response, and 116 ms overall
17-03-17 22:47:21.338 -07 000000610 INF: Y Motor: Position error before settling = -2 encoder counts (-0.001 mm)
17-03-17 22:47:21.338 -07 000000610 INF: Y Motor: To move from 74.833 to 75.381 (0.548 mm) should take 877 steps, but required 870 steps (0.544 mm). Slippage = -0.004 mm (-0.01%).
17-03-17 22:47:21.338 -07 000000610 INF: Y Motor: FPGA move command 'YMVTO 154379' took 116 ms, distance = 0.548 mm, average velocity = 4.725 mm/sec
17-03-17 22:47:22.008 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:47:22.008 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 67. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1047, R2=1076, Total=2123. Warn if over 250 bubbles per interval.
17-03-17 22:47:24.338 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:47:24.338 -07 000000576 INF: FPGA: Recv YRDPOS 154378
17-03-17 22:47:24.348 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:47:24.348 -07 000000610 INF: Y Motor: Encoder = 154378 = motor step 120607.8 = 75.3799 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:47:24.368 -07 000000610 INF: Y Motor: After move to 75.380580, error = -0.000697, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:47:24.368 -07 000000610 INF: Y Motor: Position error after settling = -1 encoder counts (0.000 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 22:47:24.368 -07 000000610 INF: Y Motor: Moved to 75.3799 after 3151 ms
17-03-17 22:47:24.378 -07 000000610 INF: =================== Cycle #68, Flow Cell Temp 60° ===================
17-03-17 22:47:24.378 -07 000000610 INF: =================== Cycle #68, Flow Cell Temp 60°, FC temperature to 60° ===================
17-03-17 22:47:24.378 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 60000000\n [FlowCellTempControl]
17-03-17 22:47:24.378 -07 000000482 INF: FPGA: Recv TEC2TEMP 
17-03-17 22:47:24.388 -07 000000610 INF: FPGA: 'TEC2TEMP 0 60000000' command took 1 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:47:24.388 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 22:47:24.388 -07 000000618 INF: FPGA: Recv TEC2EN 
17-03-17 22:47:24.398 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:47:24.398 -07 000000610 INF: =================== Cycle #68, Flow Cell Temp 60° ===================
17-03-17 22:47:24.398 -07 000000610 INF: =================== Cycle #68 ===================
17-03-17 22:47:24.398 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 22:47:24.398 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 22:47:24.428 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-17 22:47:24.428 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 24 to 3. Moving 3 positions.
17-03-17 22:47:24.428 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 22:47:24.728 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 22:47:24.748 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-17 22:47:24.748 -07 000000610 INF: ReagentValve: Move+ from 24 to 3 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-17 22:47:24.798 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 22:47:24.818 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 22:47:24.818 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 22:47:24.918 -07 000000610 INF: =================== Cycle #68, Pumping Reagent PR2 (3) ===================
17-03-17 22:47:24.918 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-17 22:47:24.918 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:47:24.948 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 22:47:24.948 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 22:47:24.948 -07 000000610 INF: =================== Cycle #68, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 22:47:24.968 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 68, FrontChillerTemperature: 3.981281,
17-03-17 22:47:25.078 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-17 22:47:25.118 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:47:27.008 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 1
17-03-17 22:47:27.008 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 67. Bubbles during last 5000 ms interval: R1=1, R2=0, Total=1. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1048, R2=1076, Total=2124. Warn if over 250 bubbles per interval.
17-03-17 22:47:28.248 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:47:28.278 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:47:28.698 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:47:28.728 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:47:29.148 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:47:29.178 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:47:29.178 -07 000000610 INF: LanePump: Waited 4060 ms for pump motion to complete
17-03-17 22:47:29.178 -07 000000610 INF: =================== Cycle #68, Pumping Reagent PR2 (3) ===================
17-03-17 22:47:29.308 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:47:29.338 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 22:47:29.338 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 22:47:29.468 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:47:29.498 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 22:47:29.498 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 22:47:29.498 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 22:47:29.628 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 22:47:29.658 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:47:30.088 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:47:30.118 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:47:30.118 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 22:47:30.118 -07 000000610 INF: =================== Cycle #68 ===================
17-03-17 22:47:30.338 -07 000000482 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 68, FrontChillerTemperature: 4.000345,
17-03-17 22:47:31.338 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 22:47:31.338 -07 000000610 INF: ReagentValve: Go to position 4 - PumpToFlowcell start
17-03-17 22:47:31.338 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 22:47:31.358 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 22:47:31.358 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 3 to 4. Moving 1 positions.
17-03-17 22:47:31.358 -07 000000610 INF: ReagentValve: Xmit +04\r
17-03-17 22:47:31.498 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 22:47:31.518 -07 000000610 INF: ReagentValve: Recv 00CD\r
17-03-17 22:47:31.518 -07 000000610 INF: ReagentValve: Move+ from 3 to 4 took 205 steps, expected 204. Error = 1 steps (0.5%)
17-03-17 22:47:31.568 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 22:47:31.588 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-17 22:47:31.588 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 22:47:31.688 -07 000000610 INF: =================== Cycle #68, Pumping Reagent CMS (4) ===================
17-03-17 22:47:31.688 -07 000000610 INF: LanePump: Pumping from 4, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 22:47:31.688 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:47:31.718 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 22:47:31.718 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 22:47:31.718 -07 000000610 INF: =================== Cycle #68, Pumping Reagent CMS (4), Aspirating port InputPort ===================
17-03-17 22:47:31.848 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 22:47:31.888 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:47:32.008 -07 000000478 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 0
17-03-17 22:47:32.008 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 67. Bubbles during last 5000 ms interval: R1=0, R2=1, Total=1. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1048, R2=1077, Total=2125. Warn if over 250 bubbles per interval.
17-03-17 22:47:33.328 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:47:33.358 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:47:33.778 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:47:33.808 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:47:33.808 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-17 22:47:33.808 -07 000000610 INF: =================== Cycle #68, Pumping Reagent CMS (4) ===================
17-03-17 22:47:33.938 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:47:33.968 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 22:47:33.968 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 22:47:34.098 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:47:34.128 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 22:47:34.128 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 22:47:34.128 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 22:47:34.258 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 22:47:34.288 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:47:34.718 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:47:34.748 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:47:34.748 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 22:47:34.748 -07 000000610 INF: =================== Cycle #68 ===================
17-03-17 22:47:35.708 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 68, FrontChillerTemperature: 4.023489,
17-03-17 22:47:35.968 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 22:47:35.968 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 22:47:35.968 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 22:47:35.988 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-17 22:47:35.988 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 4 to 3. Moving 1 positions.
17-03-17 22:47:35.988 -07 000000610 INF: ReagentValve: Xmit -03\r
17-03-17 22:47:36.138 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 22:47:36.158 -07 000000610 INF: ReagentValve: Recv 00E1\r
17-03-17 22:47:36.158 -07 000000610 INF: ReagentValve: Move- from 4 to 3 took 225 steps, expected 204. Error = 21 steps (10.3%)
17-03-17 22:47:36.208 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 22:47:36.228 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 22:47:36.228 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 22:47:36.328 -07 000000610 INF: =================== Cycle #68, Pumping Reagent PR2 (3) ===================
17-03-17 22:47:36.328 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 22:47:36.328 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:47:36.358 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 22:47:36.358 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 22:47:36.358 -07 000000610 INF: =================== Cycle #68, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 22:47:36.488 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 22:47:36.528 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:47:37.008 -07 000000551 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 3 R1 6
17-03-17 22:47:37.008 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 67. Bubbles during last 5000 ms interval: R1=6, R2=3, Total=9. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1054, R2=1080, Total=2134. Warn if over 250 bubbles per interval.
17-03-17 22:47:37.398 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:47:37.428 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:47:37.428 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-17 22:47:37.428 -07 000000610 INF: =================== Cycle #68, Pumping Reagent PR2 (3) ===================
17-03-17 22:47:37.558 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:47:37.588 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 22:47:37.588 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 22:47:37.718 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:47:37.748 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 22:47:37.748 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 22:47:37.748 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 22:47:37.878 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 22:47:37.908 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:47:38.338 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:47:38.368 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:47:38.368 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 22:47:38.368 -07 000000610 INF: =================== Cycle #68 ===================
17-03-17 22:47:38.368 -07 000000551 INF: WaitCommand(10000) start
17-03-17 22:47:38.368 -07 000000547 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 22:47:38.368 -07 000000547 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 22:47:39.588 -07 000000547 INF: AsyncDelayTimer waited 1215ms
17-03-17 22:47:39.588 -07 000000547 INF: LanePump: Xmit /1?\r
17-03-17 22:47:39.618 -07 000000547 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 22:47:39.618 -07 000000547 INF: LanePump: Current Position of Pump is: 1110
17-03-17 22:47:39.748 -07 000000547 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 22:47:39.788 -07 000000547 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:47:41.088 -07 000000486 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 68, FrontChillerTemperature: 4.019446,
17-03-17 22:47:41.318 -07 000000547 INF: LanePump: Xmit /1Q\r
17-03-17 22:47:41.348 -07 000000547 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:47:41.768 -07 000000547 INF: LanePump: Xmit /1Q\r
17-03-17 22:47:41.798 -07 000000547 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:47:41.798 -07 000000547 INF: LanePump: Waited 2010 ms for pump motion to complete
17-03-17 22:47:41.798 -07 000000547 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 22:47:41.798 -07 000000547 INF: ===================  ===================
17-03-17 22:47:42.008 -07 000000478 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 2
17-03-17 22:47:42.008 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 67. Bubbles during last 5000 ms interval: R1=2, R2=1, Total=3. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1056, R2=1081, Total=2137. Warn if over 250 bubbles per interval.
17-03-17 22:47:46.448 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 68, FrontChillerTemperature: 4.024884,
17-03-17 22:47:47.008 -07 000000593 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:47:47.008 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 67. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1056, R2=1081, Total=2137. Warn if over 250 bubbles per interval.
17-03-17 22:47:48.378 -07 000000551 INF: WaitCommand(10000) end
17-03-17 22:47:48.378 -07 000000610 INF: =================== Cycle #68, Pumping Reagent PR2 (3) ===================
17-03-17 22:47:48.378 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 250 µL, calling command Pumping to Flow Cell #1
17-03-17 22:47:48.378 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:47:48.408 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 22:47:48.408 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 22:47:48.408 -07 000000610 INF: =================== Cycle #68, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 22:47:48.538 -07 000000610 INF: LanePump: Xmit /1V400IP1500R\r
17-03-17 22:47:48.578 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:47:51.818 -07 000000409 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 68, FrontChillerTemperature: 3.999021,
17-03-17 22:47:52.008 -07 000000593 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 3 R1 1
17-03-17 22:47:52.008 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 67. Bubbles during last 5000 ms interval: R1=1, R2=3, Total=4. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1057, R2=1084, Total=2141. Warn if over 250 bubbles per interval.
17-03-17 22:47:54.708 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:47:54.738 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:47:55.158 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:47:55.188 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:47:55.608 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:47:55.638 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:47:56.058 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:47:56.088 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:47:56.508 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:47:56.538 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:47:56.538 -07 000000610 INF: LanePump: Waited 7959 ms for pump motion to complete
17-03-17 22:47:56.538 -07 000000610 INF: =================== Cycle #68, Pumping Reagent PR2 (3) ===================
17-03-17 22:47:56.668 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:47:56.698 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 22:47:56.698 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 22:47:56.828 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:47:56.858 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 22:47:56.858 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 22:47:56.858 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 22:47:56.988 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 22:47:57.008 -07 000000482 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 14 R1 15
17-03-17 22:47:57.008 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 67. Bubbles during last 5000 ms interval: R1=15, R2=14, Total=29. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1072, R2=1098, Total=2170. Warn if over 250 bubbles per interval.
17-03-17 22:47:57.018 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:47:57.188 -07 000000482 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 68, FrontChillerTemperature: 3.993549,
17-03-17 22:47:57.448 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:47:57.478 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:47:57.478 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 22:47:57.478 -07 000000610 INF: =================== Cycle #68 ===================
17-03-17 22:47:58.698 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 22:47:58.698 -07 000000610 INF: ReagentValve: Go to position 1 - PumpToFlowcell start
17-03-17 22:47:58.698 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 22:47:58.718 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 22:47:58.718 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 1. Moving 2 positions.
17-03-17 22:47:58.718 -07 000000610 INF: ReagentValve: Xmit -01\r
17-03-17 22:47:58.928 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 22:47:58.948 -07 000000610 INF: ReagentValve: Recv 0198\r
17-03-17 22:47:58.948 -07 000000610 INF: ReagentValve: Move- from 3 to 1 took 408 steps, expected 408. Error = 0 steps (0.0%)
17-03-17 22:47:58.998 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 22:47:59.018 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-17 22:47:59.018 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 22:47:59.118 -07 000000610 INF: =================== Cycle #68, Pumping Reagent IMT (1) ===================
17-03-17 22:47:59.118 -07 000000610 INF: LanePump: Pumping from 1, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 22:47:59.118 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:47:59.158 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 22:47:59.158 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 22:47:59.158 -07 000000610 INF: =================== Cycle #68, Pumping Reagent IMT (1), Aspirating port InputPort ===================
17-03-17 22:47:59.288 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 22:47:59.328 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:48:00.768 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:48:00.798 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:48:01.218 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:48:01.248 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:48:01.248 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-17 22:48:01.248 -07 000000610 INF: =================== Cycle #68, Pumping Reagent IMT (1) ===================
17-03-17 22:48:01.378 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:48:01.408 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 22:48:01.408 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 22:48:01.538 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:48:01.568 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 22:48:01.568 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 22:48:01.568 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 22:48:01.698 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 22:48:01.728 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:48:02.008 -07 000000478 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 3
17-03-17 22:48:02.008 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 67. Bubbles during last 5000 ms interval: R1=3, R2=0, Total=3. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1075, R2=1098, Total=2173. Warn if over 250 bubbles per interval.
17-03-17 22:48:02.158 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:48:02.188 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:48:02.188 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 22:48:02.188 -07 000000610 INF: =================== Cycle #68 ===================
17-03-17 22:48:02.558 -07 000000409 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 68, FrontChillerTemperature: 4.016692,
17-03-17 22:48:03.408 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 22:48:03.408 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 22:48:03.408 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 22:48:03.428 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-17 22:48:03.428 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 1 to 3. Moving 2 positions.
17-03-17 22:48:03.428 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 22:48:03.658 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 22:48:03.678 -07 000000610 INF: ReagentValve: Recv 01AC\r
17-03-17 22:48:03.678 -07 000000610 INF: ReagentValve: Move+ from 1 to 3 took 428 steps, expected 408. Error = 20 steps (4.9%)
17-03-17 22:48:03.728 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 22:48:03.748 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 22:48:03.748 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 22:48:03.848 -07 000000610 INF: =================== Cycle #68, Pumping Reagent PR2 (3) ===================
17-03-17 22:48:03.848 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 22:48:03.848 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:48:03.878 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 22:48:03.878 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 22:48:03.878 -07 000000610 INF: =================== Cycle #68, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 22:48:04.008 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 22:48:04.048 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:48:04.918 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:48:04.948 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:48:04.948 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-17 22:48:04.948 -07 000000610 INF: =================== Cycle #68, Pumping Reagent PR2 (3) ===================
17-03-17 22:48:05.078 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:48:05.108 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 22:48:05.108 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 22:48:05.238 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:48:05.268 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 22:48:05.268 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 22:48:05.268 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 22:48:05.398 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 22:48:05.428 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:48:05.858 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:48:05.888 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:48:05.888 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 22:48:05.888 -07 000000610 INF: =================== Cycle #68 ===================
17-03-17 22:48:05.888 -07 000000610 INF: =================== Cycle #68, Flow Cell Temp 65° ===================
17-03-17 22:48:05.888 -07 000000610 INF: =================== Cycle #68, Flow Cell Temp 65°, FC temperature to 65° ===================
17-03-17 22:48:05.888 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 65000000\n [FlowCellTempControl]
17-03-17 22:48:05.888 -07 000000576 INF: FPGA: Recv TEC2TEMP 
17-03-17 22:48:05.898 -07 000000610 INF: FPGA: 'TEC2TEMP 0 65000000' command took 1 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:48:05.898 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 22:48:05.898 -07 000000551 INF: FPGA: Recv TEC2EN 
17-03-17 22:48:05.908 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:48:05.908 -07 000000610 INF: =================== Cycle #68, Flow Cell Temp 65° ===================
17-03-17 22:48:05.908 -07 000000610 INF: =================== Cycle #68 ===================
17-03-17 22:48:05.908 -07 000000610 INF: WaitCommand(30000) start
17-03-17 22:48:07.008 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 3 R1 1
17-03-17 22:48:07.008 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 67. Bubbles during last 5000 ms interval: R1=1, R2=3, Total=4. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1076, R2=1101, Total=2177. Warn if over 250 bubbles per interval.
17-03-17 22:48:07.928 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 68, FrontChillerTemperature: 3.985358,
17-03-17 22:48:12.008 -07 000000593 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:48:12.008 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 67. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1076, R2=1101, Total=2177. Warn if over 250 bubbles per interval.
17-03-17 22:48:13.308 -07 000000478 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 68, FrontChillerTemperature: 3.994908,
17-03-17 22:48:17.008 -07 000000478 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 0
17-03-17 22:48:17.008 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 67. Bubbles during last 5000 ms interval: R1=0, R2=1, Total=1. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1076, R2=1102, Total=2178. Warn if over 250 bubbles per interval.
17-03-17 22:48:18.668 -07 000000551 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 68, FrontChillerTemperature: 3.973092,
17-03-17 22:48:22.008 -07 000000547 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:48:22.008 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 67. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1076, R2=1102, Total=2178. Warn if over 250 bubbles per interval.
17-03-17 22:48:24.038 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 68, FrontChillerTemperature: 3.997626,
17-03-17 22:48:27.008 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:48:27.008 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 67. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1076, R2=1102, Total=2178. Warn if over 250 bubbles per interval.
17-03-17 22:48:29.418 -07 000000593 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 68, FrontChillerTemperature: 3.98264,
17-03-17 22:48:32.008 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:48:32.008 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 67. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1076, R2=1102, Total=2178. Warn if over 250 bubbles per interval.
17-03-17 22:48:34.778 -07 000000482 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 68, FrontChillerTemperature: 3.990831,
17-03-17 22:48:35.918 -07 000000610 INF: WaitCommand(30000) end
17-03-17 22:48:35.918 -07 000000610 INF: =================== Cycle #68, Pumping Reagent PR2 (3) ===================
17-03-17 22:48:35.918 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 5 µL, calling command Pumping to Flow Cell #1
17-03-17 22:48:36.018 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:48:36.048 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 22:48:36.048 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 22:48:36.048 -07 000000610 INF: =================== Cycle #68, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 22:48:36.178 -07 000000610 INF: LanePump: Xmit /1V400IP30R\r
17-03-17 22:48:36.218 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:48:36.758 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:48:36.788 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:48:36.788 -07 000000610 INF: LanePump: Waited 570 ms for pump motion to complete
17-03-17 22:48:36.788 -07 000000610 INF: =================== Cycle #68, Pumping Reagent PR2 (3) ===================
17-03-17 22:48:36.918 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:48:36.948 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 22:48:36.948 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-17 22:48:37.008 -07 000000547 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:48:37.008 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 67. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1076, R2=1102, Total=2178. Warn if over 250 bubbles per interval.
17-03-17 22:48:37.078 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:48:37.108 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 22:48:37.108 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-17 22:48:37.108 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 22:48:37.238 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 22:48:37.268 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:48:37.698 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:48:37.728 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:48:37.728 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 22:48:37.728 -07 000000610 INF: =================== Cycle #68 ===================
17-03-17 22:48:37.728 -07 000000486 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 22:48:37.728 -07 000000618 INF: WaitCommand(30000) start
17-03-17 22:48:37.728 -07 000000486 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 22:48:38.948 -07 000000486 INF: AsyncDelayTimer waited 1216ms
17-03-17 22:48:38.948 -07 000000486 INF: LanePump: Xmit /1?\r
17-03-17 22:48:38.978 -07 000000486 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 22:48:38.978 -07 000000486 INF: LanePump: Current Position of Pump is: 1920
17-03-17 22:48:39.108 -07 000000486 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 22:48:39.148 -07 000000486 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:48:40.148 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 68, FrontChillerTemperature: 4.000345,
17-03-17 22:48:41.488 -07 000000486 INF: LanePump: Xmit /1Q\r
17-03-17 22:48:41.518 -07 000000486 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:48:41.938 -07 000000486 INF: LanePump: Xmit /1Q\r
17-03-17 22:48:41.968 -07 000000486 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:48:41.968 -07 000000486 INF: LanePump: Waited 2822 ms for pump motion to complete
17-03-17 22:48:41.968 -07 000000486 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 22:48:41.968 -07 000000486 INF: ===================  ===================
17-03-17 22:48:42.008 -07 000000482 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:48:42.008 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 67. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1076, R2=1102, Total=2178. Warn if over 250 bubbles per interval.
17-03-17 22:48:45.528 -07 000000593 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 68, FrontChillerTemperature: 4.016692,
17-03-17 22:48:47.008 -07 000000482 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:48:47.008 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 67. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1076, R2=1102, Total=2178. Warn if over 250 bubbles per interval.
17-03-17 22:48:50.898 -07 000000593 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 68, FrontChillerTemperature: 4.016692,
17-03-17 22:48:52.008 -07 000000482 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:48:52.008 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 67. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1076, R2=1102, Total=2178. Warn if over 250 bubbles per interval.
17-03-17 22:48:56.258 -07 000000482 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 68, FrontChillerTemperature: 4.008536,
17-03-17 22:48:57.008 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:48:57.008 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 67. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1076, R2=1102, Total=2178. Warn if over 250 bubbles per interval.
17-03-17 22:49:01.628 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 68, FrontChillerTemperature: 3.994908,
17-03-17 22:49:02.008 -07 000000482 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:49:02.008 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 67. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1076, R2=1102, Total=2178. Warn if over 250 bubbles per interval.
17-03-17 22:49:06.998 -07 000000478 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 68, FrontChillerTemperature: 3.994908,
17-03-17 22:49:07.008 -07 000000593 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:49:07.008 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 67. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1076, R2=1102, Total=2178. Warn if over 250 bubbles per interval.
17-03-17 22:49:07.738 -07 000000618 INF: WaitCommand(30000) end
17-03-17 22:49:07.738 -07 000000610 INF: =================== Cycle #68, Flow Cell Temp 22° ===================
17-03-17 22:49:07.738 -07 000000610 INF: =================== Cycle #68, Flow Cell Temp 22°, FC temperature to 22° ===================
17-03-17 22:49:07.738 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 22000000\n [FlowCellTempControl]
17-03-17 22:49:07.748 -07 000000478 INF: FPGA: Recv TEC2TEMP 
17-03-17 22:49:07.748 -07 000000610 INF: FPGA: 'TEC2TEMP 0 22000000' command took 1 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:49:07.748 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 22:49:07.748 -07 000000627 INF: FPGA: Recv TEC2EN 
17-03-17 22:49:07.758 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:49:07.758 -07 000000610 INF: =================== Cycle #68, Flow Cell Temp 22° ===================
17-03-17 22:49:07.758 -07 000000610 INF: =================== Cycle #68 ===================
17-03-17 22:49:07.758 -07 000000610 INF: =================== Cycle #68, Pumping Reagent PR2 (3) ===================
17-03-17 22:49:07.758 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-17 22:49:07.758 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:49:07.788 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 22:49:07.788 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 22:49:07.788 -07 000000610 INF: =================== Cycle #68, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 22:49:07.918 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-17 22:49:07.958 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:49:11.088 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:49:11.118 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:49:11.538 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:49:11.568 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:49:11.988 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:49:12.008 -07 000000478 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 1
17-03-17 22:49:12.008 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 67. Bubbles during last 5000 ms interval: R1=1, R2=1, Total=2. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1077, R2=1103, Total=2180. Warn if over 250 bubbles per interval.
17-03-17 22:49:12.018 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:49:12.018 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-17 22:49:12.018 -07 000000610 INF: =================== Cycle #68, Pumping Reagent PR2 (3) ===================
17-03-17 22:49:12.148 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:49:12.178 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 22:49:12.178 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 22:49:12.308 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:49:12.338 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 22:49:12.338 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 22:49:12.338 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 22:49:12.368 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 68, FrontChillerTemperature: 4.008536,
17-03-17 22:49:12.468 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 22:49:12.498 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:49:12.928 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:49:12.958 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:49:12.958 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 22:49:12.958 -07 000000610 INF: =================== Cycle #68 ===================
17-03-17 22:49:14.178 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 22:49:14.178 -07 000000610 INF: ReagentValve: Go to position 2 - PumpToFlowcell start
17-03-17 22:49:14.178 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 22:49:14.198 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 22:49:14.198 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 2. Moving 1 positions.
17-03-17 22:49:14.198 -07 000000610 INF: ReagentValve: Xmit -02\r
17-03-17 22:49:14.348 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 22:49:14.368 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-17 22:49:14.368 -07 000000610 INF: ReagentValve: Move- from 3 to 2 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-17 22:49:14.418 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 22:49:14.438 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-17 22:49:14.438 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 22:49:14.538 -07 000000610 INF: =================== Cycle #68, Pumping Reagent USM (2) ===================
17-03-17 22:49:14.538 -07 000000610 INF: LanePump: Pumping from 2, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 22:49:14.538 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:49:14.568 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 22:49:14.568 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 22:49:14.568 -07 000000610 INF: =================== Cycle #68, Pumping Reagent USM (2), Aspirating port InputPort ===================
17-03-17 22:49:14.698 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 22:49:14.738 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:49:16.178 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:49:16.208 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:49:16.628 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:49:16.658 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:49:16.658 -07 000000610 INF: LanePump: Waited 1920 ms for pump motion to complete
17-03-17 22:49:16.658 -07 000000610 INF: =================== Cycle #68, Pumping Reagent USM (2) ===================
17-03-17 22:49:16.788 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:49:16.818 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 22:49:16.818 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 22:49:16.948 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:49:16.978 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 22:49:16.978 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 22:49:16.978 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 22:49:17.008 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:49:17.008 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 67. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1077, R2=1103, Total=2180. Warn if over 250 bubbles per interval.
17-03-17 22:49:17.108 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 22:49:17.138 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:49:17.568 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:49:17.598 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:49:17.598 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 22:49:17.598 -07 000000610 INF: =================== Cycle #68 ===================
17-03-17 22:49:17.748 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 68, FrontChillerTemperature: 4.008536,
17-03-17 22:49:18.818 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 22:49:18.818 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 22:49:18.818 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 22:49:18.838 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-17 22:49:18.838 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 2 to 3. Moving 1 positions.
17-03-17 22:49:18.838 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 22:49:18.988 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 22:49:19.008 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-17 22:49:19.008 -07 000000610 INF: ReagentValve: Move+ from 2 to 3 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-17 22:49:19.058 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 22:49:19.078 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 22:49:19.078 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 22:49:19.178 -07 000000610 INF: =================== Cycle #68, Pumping Reagent PR2 (3) ===================
17-03-17 22:49:19.178 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 22:49:19.178 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:49:19.208 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 22:49:19.208 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 22:49:19.208 -07 000000610 INF: =================== Cycle #68, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 22:49:19.338 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 22:49:19.378 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:49:20.248 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:49:20.278 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:49:20.278 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-17 22:49:20.278 -07 000000610 INF: =================== Cycle #68, Pumping Reagent PR2 (3) ===================
17-03-17 22:49:20.408 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:49:20.438 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 22:49:20.438 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 22:49:20.568 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:49:20.598 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 22:49:20.598 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 22:49:20.598 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 22:49:20.728 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 22:49:20.758 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:49:21.188 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:49:21.218 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:49:21.218 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 22:49:21.218 -07 000000610 INF: =================== Cycle #68 ===================
17-03-17 22:49:21.218 -07 000000576 INF: WaitCommand(10000) start
17-03-17 22:49:21.218 -07 000000409 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 22:49:21.218 -07 000000409 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 22:49:22.008 -07 000000478 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 1
17-03-17 22:49:22.008 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 67. Bubbles during last 5000 ms interval: R1=1, R2=0, Total=1. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1078, R2=1103, Total=2181. Warn if over 250 bubbles per interval.
17-03-17 22:49:22.438 -07 000000409 INF: AsyncDelayTimer waited 1216ms
17-03-17 22:49:22.438 -07 000000409 INF: LanePump: Xmit /1?\r
17-03-17 22:49:22.468 -07 000000409 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 22:49:22.468 -07 000000409 INF: LanePump: Current Position of Pump is: 1110
17-03-17 22:49:22.598 -07 000000409 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 22:49:22.638 -07 000000409 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:49:23.118 -07 000000627 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 68, FrontChillerTemperature: 4.000345,
17-03-17 22:49:24.168 -07 000000409 INF: LanePump: Xmit /1Q\r
17-03-17 22:49:24.198 -07 000000409 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:49:24.618 -07 000000409 INF: LanePump: Xmit /1Q\r
17-03-17 22:49:24.648 -07 000000409 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:49:24.648 -07 000000409 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-17 22:49:24.648 -07 000000409 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 22:49:24.648 -07 000000409 INF: ===================  ===================
17-03-17 22:49:27.008 -07 000000551 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 0
17-03-17 22:49:27.008 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 67. Bubbles during last 5000 ms interval: R1=0, R2=1, Total=1. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1078, R2=1104, Total=2182. Warn if over 250 bubbles per interval.
17-03-17 22:49:28.478 -07 000000627 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 68, FrontChillerTemperature: 3.99219,
17-03-17 22:49:31.228 -07 000000576 INF: WaitCommand(10000) end
17-03-17 22:49:31.228 -07 000000610 INF: =================== Cycle #68, Imaging ===================
17-03-17 22:49:31.228 -07 000000610 INF: Imaging Cycle 68: ScanTilesCommand Cycle 68 time start.
17-03-17 22:49:31.228 -07 000000610 INF: ReagentValve: Go to position 24 (Plug) - Start of ScanTilesCommand
17-03-17 22:49:31.228 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 22:49:31.258 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 22:49:31.258 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 24. Moving 3 positions.
17-03-17 22:49:31.258 -07 000000610 INF: ReagentValve: Xmit -18\r
17-03-17 22:49:31.558 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 22:49:31.578 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-17 22:49:31.578 -07 000000610 INF: ReagentValve: Move- from 3 to 24 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-17 22:49:31.628 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 22:49:31.648 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-17 22:49:31.648 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:49:31.648 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:49:31.648 -07 000000618 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms start.
17-03-17 22:49:31.648 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:49:31.648 -07 000000618 INF: FPGA: Xmit EXLED1ON\n [RedLED]
17-03-17 22:49:31.648 -07 000000486 INF: FPGA: Recv EXLED1ON 
17-03-17 22:49:31.658 -07 000000618 INF: FPGA: 'EXLED1ON' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 22:49:31.658 -07 000000618 INF: FPGA: Xmit EXLED1ADCR\n [RedLED]
17-03-17 22:49:31.658 -07 000000382 INF: FPGA: Recv EXLED1ADCR 23164
17-03-17 22:49:31.668 -07 000000618 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:49:31.668 -07 000000618 INF: RedLED: Using Red data: Photodiode ADC 23164 --> 7.4 mW (old method), or 205.3 mW (new method). Difference = 197.9 mW
17-03-17 22:49:31.668 -07 000000618 INF: FPGA: Xmit EXLED1OFF\n [RedLED]
17-03-17 22:49:31.668 -07 000000547 INF: FPGA: Recv EXLED1OFF 
17-03-17 22:49:31.678 -07 000000618 INF: FPGA: 'EXLED1OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:49:31.678 -07 000000618 INF: RedLED: LED was on for 20 ms
17-03-17 22:49:31.678 -07 000000618 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms end. Duration was 24 ms.
17-03-17 22:49:31.678 -07 000000618 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms start.
17-03-17 22:49:31.678 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:49:31.678 -07 000000618 INF: FPGA: Xmit EXLED2ON\n [GreenLED]
17-03-17 22:49:31.678 -07 000000409 INF: FPGA: Recv EXLED2ON 
17-03-17 22:49:31.688 -07 000000618 INF: FPGA: 'EXLED2ON' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:49:31.688 -07 000000618 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-17 22:49:31.688 -07 000000593 INF: FPGA: Recv EXLED1ADCR 2102
17-03-17 22:49:31.698 -07 000000618 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:49:31.698 -07 000000618 INF: GreenLED: Using Green data: Photodiode ADC 2102 --> 0.9 mW (old method), or 182.6 mW (new method). Difference = 181.7 mW
17-03-17 22:49:31.698 -07 000000618 INF: FPGA: Xmit EXLED2OFF\n [GreenLED]
17-03-17 22:49:31.698 -07 000000501 INF: FPGA: Recv EXLED2OFF 
17-03-17 22:49:31.708 -07 000000618 INF: FPGA: 'EXLED2OFF' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:49:31.708 -07 000000618 INF: GreenLED: LED was on for 19 ms
17-03-17 22:49:31.708 -07 000000618 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms end. Duration was 28 ms.
17-03-17 22:49:31.708 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-17 22:49:31.708 -07 000000409 INF: FPGA: Recv EMCUR 
17-03-17 22:49:31.718 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:49:31.718 -07 000000610 INF: FPGA: Xmit EMOUT 20 70\n [Compensator]
17-03-17 22:49:32.008 -07 000000547 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 0
17-03-17 22:49:32.008 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 67. Bubbles during last 5000 ms interval: R1=0, R2=1, Total=1. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1078, R2=1105, Total=2183. Warn if over 250 bubbles per interval.
17-03-17 22:49:32.218 -07 000000409 INF: FPGA: Recv EMOUT
17-03-17 22:49:32.218 -07 000000610 INF: FPGA: 'EMOUT 20 70' command took 0 ms to send, 493 ms to get response, and 502 ms overall
17-03-17 22:49:32.218 -07 000000610 INF: FPGA: Xmit EMCUR 75\n [Compensator]
17-03-17 22:49:32.218 -07 000000482 INF: FPGA: Recv EMCUR 
17-03-17 22:49:32.228 -07 000000610 INF: FPGA: 'EMCUR 75' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:49:32.228 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 22:49:32.228 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 75.3798828125, Z-Position -0.127473500124915. ------
17-03-17 22:49:32.228 -07 000000627 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:49:32.228 -07 000000409 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.17944 mm
17-03-17 22:49:32.228 -07 000000409 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:49:32.228 -07 000000551 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:49:32.238 -07 000000627 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 22:49:32.238 -07 000000627 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:49:32.238 -07 000000618 INF: Z Motor: Entering MoveAbsStepped (DAC = 39198, sync = True, waitForSettling = False)
17-03-17 22:49:32.238 -07 000000618 INF: Z Motor: Moving to -0.179437 mm, started at -0.127474 mm, distance = -51.96 um
17-03-17 22:49:32.238 -07 000000501 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-17 22:49:32.238 -07 000000501 INF: Y Motor: Moving to 59.9126 mm, started at 75.3799 mm, delta = -15.4673 mm
17-03-17 22:49:32.248 -07 000000618 INF: FPGA: Xmit ZDACW 39198\n [Z Motor]
17-03-17 22:49:32.248 -07 000000482 INF: FPGA: Recv ZDACW
17-03-17 22:49:32.258 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:49:32.258 -07 000000618 INF: FPGA: 'ZDACW 39198' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:49:32.258 -07 000000478 INF: FPGA: Recv YRDPOS 154378
17-03-17 22:49:32.268 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-17 22:49:32.268 -07 000000618 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:49:32.268 -07 000000501 INF: Y Motor: Encoder = 154378 = motor step 120607.8 = 75.3799 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:49:32.268 -07 000000501 INF: Y Motor: Last commanded position = 75.3806 mm (120608.9 steps), delta from last commanded position = -15.4680 mm (-24748.8 steps). UsingTableMove = False
17-03-17 22:49:32.268 -07 000000501 INF: Y Motor: Moving to 122701 encoder counts
17-03-17 22:49:32.268 -07 000000547 INF: FPGA: Recv ZDACR 39198
17-03-17 22:49:32.278 -07 000000501 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-17 22:49:32.278 -07 000000618 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:49:32.278 -07 000000618 INF: Z Motor: MoveAbsStepped took 39 ms (did NOT wait for settling yet))
17-03-17 22:49:32.438 -07 000000382 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:49:32.438 -07 000000627 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:49:33.848 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 68, FrontChillerTemperature: 3.988112,
17-03-17 22:49:33.958 -07 000000576 INF: FPGA: Recv YMVTO 122703 24775
17-03-17 22:49:33.958 -07 000000501 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1675 ms to get response, and 1695 ms overall
17-03-17 22:49:33.958 -07 000000501 INF: Y Motor: Position error before settling = 2 encoder counts (0.001 mm)
17-03-17 22:49:33.958 -07 000000501 INF: Y Motor: To move from 75.380 to 59.913 (-15.467 mm) should take 24748 steps, but required 24775 steps (15.484 mm). Slippage = 0.017 mm (0.00%).
17-03-17 22:49:33.958 -07 000000501 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1695 ms, distance = 15.467 mm, average velocity = 9.125 mm/sec
17-03-17 22:49:36.808 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:49:36.808 -07 000000482 INF: FPGA: Recv YRDPOS 122697
17-03-17 22:49:36.818 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:49:36.818 -07 000000501 INF: Y Motor: Encoder = 122697 = motor step 95857.0 = 59.9106 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:49:36.838 -07 000000501 INF: Y Motor: After move to 59.912609, error = -0.001965, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:49:36.838 -07 000000501 INF: Y Motor: Position error after settling = -4 encoder counts (-0.002 mm), Delta during settling = -6 counts (-0.003 mm)
17-03-17 22:49:36.838 -07 000000501 INF: Y Motor: Moved to 59.9106 after 4602 ms
17-03-17 22:49:36.838 -07 000000409 INF: Z Motor: EndOfMoveAbsStepped: target = -0.179437 mm (DAC = 39198)
17-03-17 22:49:36.838 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:49:36.848 -07 000000547 INF: FPGA: Recv ZSGSRD 37221
17-03-17 22:49:36.848 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 5 ms to get response, and 6 ms overall
17-03-17 22:49:36.848 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:49:36.848 -07 000000478 INF: FPGA: Recv ZSGSRD 37223
17-03-17 22:49:36.858 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:49:36.858 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:49:36.858 -07 000000547 INF: FPGA: Recv ZSGSRD 37219
17-03-17 22:49:36.868 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:49:36.868 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:49:36.868 -07 000000593 INF: FPGA: Recv ZSGSRD 37223
17-03-17 22:49:36.878 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:49:36.878 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:49:36.878 -07 000000618 INF: FPGA: Recv ZSGSRD 37222
17-03-17 22:49:36.888 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:49:36.888 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:49:36.888 -07 000000618 INF: FPGA: Recv ZSGSRD 37218
17-03-17 22:49:36.898 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:49:36.898 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:49:36.898 -07 000000618 INF: FPGA: Recv ZSGSRD 37218
17-03-17 22:49:36.908 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:49:36.908 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:49:36.908 -07 000000618 INF: FPGA: Recv ZSGSRD 37225
17-03-17 22:49:36.918 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:49:36.918 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:49:36.918 -07 000000486 INF: FPGA: Recv ZSGSRD 37225
17-03-17 22:49:36.928 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:49:36.928 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:49:36.928 -07 000000482 INF: FPGA: Recv ZSGSRD 37216
17-03-17 22:49:36.938 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:49:36.938 -07 000000409 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:49:36.938 -07 000000482 INF: FPGA: Recv ZPIEZORD 33646
17-03-17 22:49:36.948 -07 000000409 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:49:36.948 -07 000000409 INF: Z Motor: Piezo is near 51.9 V (nominally 0 to 100 V), expect near 59.8 V, since DAC is at 5.981 V. Piezo Error = -7.9 V.
17-03-17 22:49:36.948 -07 000000409 INF: Z Motor: ReadAdcAverage: Commanded Z = -179.4 um, Read 10 ADC samples: Avg = 37221 (-178.5 uncal um), Error = 0.9 uncal um, Median = 37222 (-178.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 37216 (-178.5 uncal um), Max = 37225 (-178.6 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 22:49:36.948 -07 000000409 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37221, posNoise = 4, negNoise = 5
17-03-17 22:49:36.948 -07 000000409 INF: Z Motor: After move to -0.179437, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:49:36.948 -07 000000409 INF: Z Motor: Settle wait time = 4608 ms, measure time = 102 ms (allowed 150 ms), total time = 4710 ms
17-03-17 22:49:36.948 -07 000000409 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 22:49:36.998 -07 000000409 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4764 ms
17-03-17 22:49:36.998 -07 000000409 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:49:36.998 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:49:36.998 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:49:36.998 -07 000000486 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:49:36.998 -07 000000551 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:49:36.998 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:49:36.998 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:49:36.998 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:49:36.998 -07 000000576 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-17 22:49:37.008 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:49:37.008 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 67. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1078, R2=1105, Total=2183. Warn if over 250 bubbles per interval.
17-03-17 22:49:37.028 -07 000000576 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 23 ms.
17-03-17 22:49:37.028 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:49:37.028 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:49:37.028 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:49:37.038 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 22:49:37.038 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 40 ms.
17-03-17 22:49:37.048 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:49:37.088 -07 000000382 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:49:37.288 -07 000000482 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:49:37.288 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:49:37.288 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:49:37.288 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1130172064, 0x0, 559484976) start.
17-03-17 22:49:37.328 -07 000000501 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:49:37.328 -07 000000478 INF: FPGA: Recv CAMSNAP
17-03-17 22:49:37.328 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 287 ms overall
17-03-17 22:49:37.418 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1130172064, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 22:49:37.418 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:49:37.418 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:49:37.418 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-17 22:49:37.528 -07 000000627 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:49:37.528 -07 000000486 INF: Image SNR check: start
17-03-17 22:49:37.528 -07 000000547 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:49:37.538 -07 000000627 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:49:37.538 -07 000000627 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:49:37.538 -07 000000486 INF: Image SNR check: pass  [peak (Max-Min)=58.14]
17-03-17 22:49:37.538 -07 000000486 INF: Autofocus start
17-03-17 22:49:37.538 -07 000000486 INF: MeasureProfile start
17-03-17 22:49:37.548 -07 000000486 INF: MeasureProfile done
17-03-17 22:49:37.548 -07 000000486 INF: X=-16  Z correction [um]=-0.1496812
17-03-17 22:49:37.548 -07 000000486 INF: Autofocus finished
17-03-17 22:49:37.738 -07 000000486 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:49:37.738 -07 000000627 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:49:37.738 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.91064453125, Z-position -0.17943895213962. ----------
17-03-17 22:49:37.738 -07 000000610 INF: Cycle	68	Tile	1	Exposure Settings		A	461	G	222	T	222	C	461
17-03-17 22:49:37.748 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37678, sync = True, waitForSettling = True)
17-03-17 22:49:37.748 -07 000000610 INF: Z Motor: Moving to -0.172479 mm, started at -0.179439 mm, distance = 6.96 um
17-03-17 22:49:37.748 -07 000000610 INF: FPGA: Xmit ZDACW 37678\n [Z Motor]
17-03-17 22:49:37.748 -07 000000576 INF: FPGA: Recv ZDACW
17-03-17 22:49:37.758 -07 000000610 INF: FPGA: 'ZDACW 37678' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:49:37.758 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:49:37.758 -07 000000551 INF: FPGA: Recv ZDACR 37678
17-03-17 22:49:37.768 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:49:37.768 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:49:37.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:49:37.918 -07 000000482 INF: FPGA: Recv ZSGSRD 36140
17-03-17 22:49:37.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:49:37.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:49:37.928 -07 000000551 INF: FPGA: Recv ZSGSRD 36142
17-03-17 22:49:37.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:49:37.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:49:37.938 -07 000000482 INF: FPGA: Recv ZSGSRD 36141
17-03-17 22:49:37.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:49:37.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:49:37.948 -07 000000551 INF: FPGA: Recv ZSGSRD 36134
17-03-17 22:49:37.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:49:37.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:49:37.958 -07 000000547 INF: FPGA: Recv ZSGSRD 36134
17-03-17 22:49:37.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:49:37.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:49:37.968 -07 000000482 INF: FPGA: Recv ZSGSRD 36144
17-03-17 22:49:37.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:49:37.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:49:37.978 -07 000000551 INF: FPGA: Recv ZSGSRD 36137
17-03-17 22:49:37.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:49:37.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:49:37.988 -07 000000627 INF: FPGA: Recv ZSGSRD 36137
17-03-17 22:49:37.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:49:37.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:49:37.998 -07 000000501 INF: FPGA: Recv ZSGSRD 36136
17-03-17 22:49:38.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:49:38.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:49:38.008 -07 000000593 INF: FPGA: Recv ZSGSRD 36137
17-03-17 22:49:38.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:49:38.018 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:49:38.018 -07 000000486 INF: FPGA: Recv ZPIEZORD 32213
17-03-17 22:49:38.028 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:49:38.028 -07 000000610 INF: Z Motor: Piezo is near 48.8 V (nominally 0 to 100 V), expect near 57.5 V, since DAC is at 5.749 V. Piezo Error = -8.7 V.
17-03-17 22:49:38.028 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.5 um, Read 10 ADC samples: Avg = 36138 (-171.6 uncal um), Error = 0.9 uncal um, Median = 36137 (-171.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 36134 (-171.6 uncal um), Max = 36144 (-171.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 22:49:38.028 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36138, posNoise = 6, negNoise = 4
17-03-17 22:49:38.028 -07 000000610 INF: Z Motor: After move to -0.172479, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:49:38.028 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 22:49:38.028 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:49:38.028 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:49:38.028 -07 000000409 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:49:38.028 -07 000000478 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:49:38.028 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:49:38.028 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:49:38.028 -07 000000551 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:49:38.028 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:49:38.028 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:49:38.028 -07 000000382 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-17 22:49:38.028 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:49:38.028 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:49:38.028 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 22:49:38.028 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:49:38.048 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 22:49:38.048 -07 000000551 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 22:49:38.048 -07 000000382 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 23 ms.
17-03-17 22:49:38.048 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:49:38.058 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:49:38.058 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:49:38.068 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 22:49:38.068 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 44 ms.
17-03-17 22:49:38.078 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 461 461 222 222 37855 150\n [Camera]
17-03-17 22:49:38.278 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:49:38.738 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 653
17-03-17 22:49:38.738 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 653
17-03-17 22:49:38.738 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:49:38.738 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 653
17-03-17 22:49:38.738 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 653
17-03-17 22:49:38.738 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:49:38.748 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:49:38.748 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-17 22:49:38.748 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:49:38.748 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 22:49:38.928 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37855 846
17-03-17 22:49:39.078 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP turning grn on 996
17-03-17 22:49:39.148 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 395 ms.
17-03-17 22:49:39.148 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 397 ms.
17-03-17 22:49:39.148 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 22:49:39.148 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:49:39.148 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 22:49:39.148 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:49:39.148 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:49:39.148 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-17 22:49:39.158 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 9 ms.
17-03-17 22:49:39.158 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 419 ms.
17-03-17 22:49:39.228 -07 000000486 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 68, FrontChillerTemperature: 3.985358,
17-03-17 22:49:39.298 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1218
17-03-17 22:49:39.298 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1218
17-03-17 22:49:39.308 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:49:39.308 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:49:39.308 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 656674232, 0x0, 391868352) start.
17-03-17 22:49:39.308 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1218
17-03-17 22:49:39.308 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1218
17-03-17 22:49:39.308 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:49:39.308 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:49:39.308 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 2350877912, 0x0, 418435064) start.
17-03-17 22:49:39.498 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP 1410
17-03-17 22:49:39.498 -07 000000627 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:49:39.498 -07 000000610 INF: FPGA: 'CAMDBLSNAP 461 461 222 222 37855 150' command took 2 ms to send, 1411 ms to get response, and 1418 ms overall
17-03-17 22:49:39.498 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 22:49:39.498 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.91064453125, Z-Position -0.172481530390092. ------
17-03-17 22:49:39.498 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:49:39.498 -07 000000382 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.17845 mm
17-03-17 22:49:39.498 -07 000000382 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:49:39.498 -07 000000478 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-17 22:49:39.498 -07 000000478 INF: Y Motor: Moving to 60.7426 mm, started at 59.9106 mm, delta = 0.8320 mm
17-03-17 22:49:39.508 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:49:39.508 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:49:39.508 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:49:39.508 -07 000000482 INF: Z Motor: Entering MoveAbsStepped (DAC = 38982, sync = True, waitForSettling = False)
17-03-17 22:49:39.508 -07 000000482 INF: Z Motor: Moving to -0.178448 mm, started at -0.172482 mm, distance = -5.97 um
17-03-17 22:49:39.508 -07 000000409 INF: FPGA: Recv YRDPOS 122697
17-03-17 22:49:39.518 -07 000000482 INF: FPGA: Xmit ZDACW 38982\n [Z Motor]
17-03-17 22:49:39.518 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:49:39.518 -07 000000478 INF: Y Motor: Encoder = 122697 = motor step 95857.0 = 59.9106 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:49:39.518 -07 000000478 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:49:39.518 -07 000000478 INF: Y Motor: Moving 1331 steps2
17-03-17 22:49:39.518 -07 000000409 INF: FPGA: Recv ZDACW
17-03-17 22:49:39.528 -07 000000482 INF: FPGA: 'ZDACW 38982' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-17 22:49:39.528 -07 000000618 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:49:39.538 -07 000000478 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:49:39.548 -07 000000482 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:49:39.548 -07 000000627 INF: FPGA: Recv ZDACR 38982
17-03-17 22:49:39.558 -07 000000482 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:49:39.558 -07 000000482 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-17 22:49:39.708 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 656674232, 0x0, 391868352) end. Duration was 400 ms.
17-03-17 22:49:39.708 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 22:49:39.708 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:49:39.708 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 2350877912, 0x0, 418435064) end. Duration was 401 ms.
17-03-17 22:49:39.708 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 22:49:39.708 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:49:39.708 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-17 22:49:39.708 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-17 22:49:39.718 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 22:49:39.718 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-17 22:49:39.728 -07 000000541 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:49:39.728 -07 000000618 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-17 22:49:39.908 -07 000000593 INF: FPGA: Recv YMVTILE
17-03-17 22:49:39.908 -07 000000478 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 22:49:39.948 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:49:39.948 -07 000000501 INF: FPGA: Recv YRDPOS 124380
17-03-17 22:49:39.958 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:49:39.958 -07 000000478 INF: Y Motor: Encoder = 124380 = motor step 97171.9 = 60.7324 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:49:39.958 -07 000000478 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-17 22:49:39.958 -07 000000478 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.832 mm, average velocity = 2.096 mm/sec
17-03-17 22:49:40.908 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:49:40.908 -07 000000409 INF: FPGA: Recv YRDPOS 124380
17-03-17 22:49:40.918 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:49:40.918 -07 000000478 INF: Y Motor: Encoder = 124380 = motor step 97171.9 = 60.7324 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:49:40.938 -07 000000478 INF: Y Motor: After move to 60.742607, error = -0.010185, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:49:40.938 -07 000000478 INF: Y Motor: Position error after settling (table move) = -21 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:49:40.938 -07 000000478 INF: Y Motor: Moved to 60.7324 after 1436 ms (table move)
17-03-17 22:49:40.948 -07 000000382 INF: Z Motor: EndOfMoveAbsStepped: target = -0.178448 mm (DAC = 38982)
17-03-17 22:49:40.948 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:49:40.948 -07 000000593 INF: FPGA: Recv ZSGSRD 37073
17-03-17 22:49:40.958 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:49:40.958 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:49:40.958 -07 000000482 INF: FPGA: Recv ZSGSRD 37070
17-03-17 22:49:40.968 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:49:40.968 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:49:40.968 -07 000000409 INF: FPGA: Recv ZSGSRD 37075
17-03-17 22:49:40.978 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:49:40.978 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:49:40.978 -07 000000623 INF: FPGA: Recv ZSGSRD 37069
17-03-17 22:49:40.988 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:49:40.988 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:49:40.988 -07 000000551 INF: FPGA: Recv ZSGSRD 37070
17-03-17 22:49:40.998 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:49:40.998 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:49:40.998 -07 000000501 INF: FPGA: Recv ZSGSRD 37071
17-03-17 22:49:41.008 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:49:41.008 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:49:41.008 -07 000000627 INF: FPGA: Recv ZSGSRD 37066
17-03-17 22:49:41.018 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:49:41.018 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:49:41.018 -07 000000478 INF: FPGA: Recv ZSGSRD 37061
17-03-17 22:49:41.028 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:49:41.028 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:49:41.028 -07 000000482 INF: FPGA: Recv ZSGSRD 37066
17-03-17 22:49:41.038 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:49:41.038 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:49:41.038 -07 000000448 INF: FPGA: Recv ZSGSRD 37075
17-03-17 22:49:41.048 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:49:41.048 -07 000000382 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:49:41.048 -07 000000462 INF: FPGA: Recv ZPIEZORD 33423
17-03-17 22:49:41.058 -07 000000382 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:49:41.058 -07 000000382 INF: Z Motor: Piezo is near 51.4 V (nominally 0 to 100 V), expect near 59.5 V, since DAC is at 5.948 V. Piezo Error = -8.1 V.
17-03-17 22:49:41.058 -07 000000382 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.4 um, Read 10 ADC samples: Avg = 37070 (-177.6 uncal um), Error = 0.9 uncal um, Median = 37070 (-177.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 37061 (-177.5 uncal um), Max = 37075 (-177.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 22:49:41.058 -07 000000382 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37070, posNoise = 5, negNoise = 9
17-03-17 22:49:41.058 -07 000000382 INF: Z Motor: After move to -0.178448, error = -0.000021, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:49:41.058 -07 000000382 INF: Z Motor: Settle wait time = 1439 ms, measure time = 110 ms (allowed 150 ms), total time = 1549 ms
17-03-17 22:49:41.058 -07 000000382 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-17 22:49:41.098 -07 000000382 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1592 ms
17-03-17 22:49:41.098 -07 000000382 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:49:41.098 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:49:41.098 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:49:41.098 -07 000000541 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:49:41.098 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:49:41.098 -07 000000448 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:49:41.098 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:49:41.098 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:49:41.098 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:49:41.108 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 22:49:41.108 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:49:41.118 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 22:49:41.118 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 22:49:41.118 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:49:41.168 -07 000000409 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:49:41.368 -07 000000551 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:49:41.368 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:49:41.368 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:49:41.368 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 619151688, 0x0, 559484976) start.
17-03-17 22:49:41.408 -07 000000409 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:49:41.408 -07 000000618 INF: FPGA: Recv CAMSNAP
17-03-17 22:49:41.408 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 285 ms overall
17-03-17 22:49:41.498 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 619151688, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 22:49:41.498 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:49:41.498 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 22:49:41.498 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-17 22:49:41.508 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:49:41.508 -07 000000486 INF: Autofocus start
17-03-17 22:49:41.508 -07 000000486 INF: MeasureProfile start
17-03-17 22:49:41.508 -07 000000593 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:49:41.518 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:49:41.518 -07 000000501 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:49:41.518 -07 000000486 INF: MeasureProfile done
17-03-17 22:49:41.518 -07 000000486 INF: X=32  Z correction [um]=0.09220707
17-03-17 22:49:41.518 -07 000000486 INF: Autofocus finished
17-03-17 22:49:41.718 -07 000000623 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:49:41.718 -07 000000501 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:49:41.718 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.732421875, Z-position -0.178468896106214. ----------
17-03-17 22:49:41.718 -07 000000610 INF: Cycle	68	Tile	2	Exposure Settings		A	461	G	222	T	222	C	461
17-03-17 22:49:41.728 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37515, sync = True, waitForSettling = True)
17-03-17 22:49:41.728 -07 000000610 INF: Z Motor: Moving to -0.171733 mm, started at -0.178469 mm, distance = 6.74 um
17-03-17 22:49:41.728 -07 000000610 INF: FPGA: Xmit ZDACW 37515\n [Z Motor]
17-03-17 22:49:41.728 -07 000000482 INF: FPGA: Recv ZDACW
17-03-17 22:49:41.738 -07 000000610 INF: FPGA: 'ZDACW 37515' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:49:41.738 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:49:41.738 -07 000000382 INF: FPGA: Recv ZDACR 37515
17-03-17 22:49:41.748 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:49:41.748 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:49:41.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:49:41.898 -07 000000501 INF: FPGA: Recv ZSGSRD 36020
17-03-17 22:49:41.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:49:41.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:49:41.908 -07 000000486 INF: FPGA: Recv ZSGSRD 36021
17-03-17 22:49:41.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:49:41.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:49:41.918 -07 000000593 INF: FPGA: Recv ZSGSRD 36030
17-03-17 22:49:41.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:49:41.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:49:41.928 -07 000000409 INF: FPGA: Recv ZSGSRD 36026
17-03-17 22:49:41.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:49:41.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:49:41.938 -07 000000382 INF: FPGA: Recv ZSGSRD 36019
17-03-17 22:49:41.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:49:41.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:49:41.948 -07 000000576 INF: FPGA: Recv ZSGSRD 36024
17-03-17 22:49:41.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:49:41.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:49:41.958 -07 000000462 INF: FPGA: Recv ZSGSRD 36026
17-03-17 22:49:41.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:49:41.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:49:41.968 -07 000000478 INF: FPGA: Recv ZSGSRD 36024
17-03-17 22:49:41.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:49:41.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:49:41.978 -07 000000482 INF: FPGA: Recv ZSGSRD 36020
17-03-17 22:49:41.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:49:41.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:49:41.988 -07 000000382 INF: FPGA: Recv ZSGSRD 36023
17-03-17 22:49:41.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:49:41.998 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:49:41.998 -07 000000547 INF: FPGA: Recv ZPIEZORD 32076
17-03-17 22:49:42.008 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:49:42.008 -07 000000610 INF: Z Motor: Piezo is near 48.5 V (nominally 0 to 100 V), expect near 57.2 V, since DAC is at 5.724 V. Piezo Error = -8.7 V.
17-03-17 22:49:42.008 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.7 um, Read 10 ADC samples: Avg = 36023 (-170.9 uncal um), Error = 0.9 uncal um, Median = 36024 (-170.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36019 (-170.8 uncal um), Max = 36030 (-170.9 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 22:49:42.008 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36023, posNoise = 7, negNoise = 4
17-03-17 22:49:42.008 -07 000000610 INF: Z Motor: After move to -0.171733, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:49:42.008 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 22:49:42.008 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:49:42.008 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:49:42.008 -07 000000478 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:49:42.008 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:49:42.008 -07 000000627 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:49:42.008 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:49:42.008 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 67. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1078, R2=1105, Total=2183. Warn if over 250 bubbles per interval.
17-03-17 22:49:42.008 -07 000000547 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:49:42.008 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 22:49:42.008 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:49:42.008 -07 000000486 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:49:42.008 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:49:42.008 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:49:42.008 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:49:42.018 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 22:49:42.018 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:49:42.018 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:49:42.018 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:49:42.028 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 22:49:42.028 -07 000000627 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 22:49:42.028 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 22:49:42.028 -07 000000486 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 22:49:42.028 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 461 461 222 222 37692 150\n [Camera]
17-03-17 22:49:42.228 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:49:42.698 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 653
17-03-17 22:49:42.698 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 653
17-03-17 22:49:42.698 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:49:42.698 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:49:42.698 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 22:49:42.698 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 653
17-03-17 22:49:42.698 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 653
17-03-17 22:49:42.698 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:49:42.698 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:49:42.698 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 22:49:42.888 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37692 846
17-03-17 22:49:43.038 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP turning grn on 996
17-03-17 22:49:43.098 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 400 ms.
17-03-17 22:49:43.098 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 22:49:43.098 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:49:43.098 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 402 ms.
17-03-17 22:49:43.098 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 22:49:43.098 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:49:43.098 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:49:43.108 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:49:43.108 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-17 22:49:43.108 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-17 22:49:43.258 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1218
17-03-17 22:49:43.258 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1218
17-03-17 22:49:43.258 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:49:43.368 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1218
17-03-17 22:49:43.368 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1218
17-03-17 22:49:43.378 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:49:43.378 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:49:43.378 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-17 22:49:43.378 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:49:43.378 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) start.
17-03-17 22:49:43.448 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP 1412
17-03-17 22:49:43.448 -07 000000462 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:49:43.448 -07 000000610 INF: FPGA: 'CAMDBLSNAP 461 461 222 222 37692 150' command took 2 ms to send, 1408 ms to get response, and 1419 ms overall
17-03-17 22:49:43.458 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 22:49:43.458 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.732421875, Z-Position -0.17174274599379. ------
17-03-17 22:49:43.458 -07 000000482 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:49:43.458 -07 000000576 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.17829 mm
17-03-17 22:49:43.458 -07 000000576 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:49:43.458 -07 000000478 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-17 22:49:43.458 -07 000000478 INF: Y Motor: Moving to 61.5726 mm, started at 60.7324 mm, delta = 0.8402 mm
17-03-17 22:49:43.458 -07 000000593 INF: Z Motor: Entering MoveAbsStepped (DAC = 38947, sync = True, waitForSettling = False)
17-03-17 22:49:43.458 -07 000000593 INF: Z Motor: Moving to -0.178288 mm, started at -0.171743 mm, distance = -6.55 um
17-03-17 22:49:43.458 -07 000000541 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:49:43.468 -07 000000482 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 22:49:43.468 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:49:43.468 -07 000000501 INF: FPGA: Recv YRDPOS 124381
17-03-17 22:49:43.478 -07 000000593 INF: FPGA: Xmit ZDACW 38947\n [Z Motor]
17-03-17 22:49:43.478 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 22:49:43.478 -07 000000478 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:49:43.478 -07 000000502 INF: FPGA: Recv ZDACW
17-03-17 22:49:43.478 -07 000000478 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:49:43.478 -07 000000478 INF: Y Motor: Moving 1344 steps-21
17-03-17 22:49:43.488 -07 000000482 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:49:43.488 -07 000000593 INF: FPGA: 'ZDACW 38947' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-17 22:49:43.498 -07 000000478 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:49:43.508 -07 000000593 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:49:43.508 -07 000000382 INF: FPGA: Recv ZDACR 38947
17-03-17 22:49:43.518 -07 000000593 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:49:43.518 -07 000000593 INF: Z Motor: MoveAbsStepped took 52 ms (did NOT wait for settling yet))
17-03-17 22:49:43.688 -07 000000623 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:49:43.688 -07 000000482 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 22:49:43.768 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) end. Duration was 387 ms.
17-03-17 22:49:43.768 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 22:49:43.768 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:49:43.768 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:49:43.768 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 396 ms.
17-03-17 22:49:43.768 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 22:49:43.778 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:49:43.778 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 22:49:43.778 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:49:43.778 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 519 ms.
17-03-17 22:49:43.868 -07 000000593 INF: FPGA: Recv YMVTILE
17-03-17 22:49:43.868 -07 000000478 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 391 ms overall
17-03-17 22:49:43.908 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:49:43.918 -07 000000409 INF: FPGA: Recv YRDPOS 126081
17-03-17 22:49:43.918 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 22:49:43.918 -07 000000478 INF: Y Motor: Encoder = 126081 = motor step 98500.8 = 61.5630 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:49:43.918 -07 000000478 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-17 22:49:43.918 -07 000000478 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 392 ms, distance = 0.840 mm, average velocity = 2.143 mm/sec
17-03-17 22:49:44.588 -07 000000623 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 68, FrontChillerTemperature: 3.983999,
17-03-17 22:49:44.868 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:49:44.868 -07 000000541 INF: FPGA: Recv YRDPOS 126081
17-03-17 22:49:44.878 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:49:44.878 -07 000000478 INF: Y Motor: Encoder = 126081 = motor step 98500.8 = 61.5630 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:49:44.898 -07 000000478 INF: Y Motor: After move to 61.572609, error = -0.009621, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:49:44.898 -07 000000478 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:49:44.898 -07 000000478 INF: Y Motor: Moved to 61.5630 after 1437 ms (table move)
17-03-17 22:49:44.898 -07 000000576 INF: Z Motor: EndOfMoveAbsStepped: target = -0.178288 mm (DAC = 38947)
17-03-17 22:49:44.898 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:49:44.908 -07 000000593 INF: FPGA: Recv ZSGSRD 37045
17-03-17 22:49:44.908 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-17 22:49:44.908 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:49:44.908 -07 000000448 INF: FPGA: Recv ZSGSRD 37053
17-03-17 22:49:44.918 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:49:44.928 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:49:44.928 -07 000000627 INF: FPGA: Recv ZSGSRD 37041
17-03-17 22:49:44.938 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:49:44.938 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:49:44.938 -07 000000623 INF: FPGA: Recv ZSGSRD 37046
17-03-17 22:49:44.948 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:49:44.958 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:49:44.958 -07 000000541 INF: FPGA: Recv ZSGSRD 37057
17-03-17 22:49:44.968 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:49:44.968 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:49:44.968 -07 000000482 INF: FPGA: Recv ZSGSRD 37043
17-03-17 22:49:44.978 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:49:44.988 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:49:44.988 -07 000000502 INF: FPGA: Recv ZSGSRD 37042
17-03-17 22:49:44.998 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:49:44.998 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:49:44.998 -07 000000462 INF: FPGA: Recv ZSGSRD 37038
17-03-17 22:49:45.008 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:49:45.018 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:49:45.018 -07 000000627 INF: FPGA: Recv ZSGSRD 37047
17-03-17 22:49:45.028 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:49:45.028 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:49:45.028 -07 000000502 INF: FPGA: Recv ZSGSRD 37051
17-03-17 22:49:45.038 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:49:45.048 -07 000000576 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:49:45.048 -07 000000618 INF: FPGA: Recv ZPIEZORD 33430
17-03-17 22:49:45.058 -07 000000576 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:49:45.058 -07 000000576 INF: Z Motor: Piezo is near 51.4 V (nominally 0 to 100 V), expect near 59.4 V, since DAC is at 5.943 V. Piezo Error = -8.0 V.
17-03-17 22:49:45.058 -07 000000576 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.3 um, Read 10 ADC samples: Avg = 37046 (-177.4 uncal um), Error = 0.9 uncal um, Median = 37046 (-177.4 uncal um), StdDev = 6 (0.0 uncal um), Range = 19 (0.1 uncal um), Min = 37038 (-177.4 uncal um), Max = 37057 (-177.5 uncal um), Pos Noise = 11 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 22:49:45.058 -07 000000576 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37046, posNoise = 11, negNoise = 8
17-03-17 22:49:45.058 -07 000000576 INF: Z Motor: After move to -0.178288, error = -0.000027, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:49:45.058 -07 000000576 INF: Z Motor: Settle wait time = 1441 ms, measure time = 151 ms (allowed 150 ms), total time = 1592 ms
17-03-17 22:49:45.058 -07 000000576 INF: Z Motor: Warning: Actual position measuring time = 151 ms, longer than max expected time of 150 ms
17-03-17 22:49:45.058 -07 000000576 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1595 ms
17-03-17 22:49:45.058 -07 000000576 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:49:45.058 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:49:45.058 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:49:45.058 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:49:45.058 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:49:45.058 -07 000000623 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:49:45.058 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:49:45.058 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:49:45.058 -07 000000623 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:49:45.068 -07 000000623 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:49:45.068 -07 000000623 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:49:45.078 -07 000000623 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 22:49:45.078 -07 000000623 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 22:49:45.078 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:49:45.128 -07 000000409 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:49:45.328 -07 000000627 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:49:45.328 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:49:45.328 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:49:45.328 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1077874736, 0x0, 559484976) start.
17-03-17 22:49:45.368 -07 000000409 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:49:45.368 -07 000000593 INF: FPGA: Recv CAMSNAP
17-03-17 22:49:45.368 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 285 ms overall
17-03-17 22:49:45.458 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1077874736, 0x0, 559484976) end. Duration was 125 ms.
17-03-17 22:49:45.458 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:49:45.458 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:49:45.458 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-17 22:49:45.468 -07 000000448 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:49:45.468 -07 000000482 INF: Autofocus start
17-03-17 22:49:45.468 -07 000000482 INF: MeasureProfile start
17-03-17 22:49:45.468 -07 000000478 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:49:45.478 -07 000000448 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:49:45.478 -07 000000448 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:49:45.478 -07 000000482 INF: MeasureProfile done
17-03-17 22:49:45.478 -07 000000482 INF: X=16  Z correction [um]=0.01042744
17-03-17 22:49:45.478 -07 000000482 INF: Autofocus finished
17-03-17 22:49:45.678 -07 000000541 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:49:45.678 -07 000000448 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:49:45.678 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.56298828125, Z-position -0.178314715014811. ----------
17-03-17 22:49:45.678 -07 000000610 INF: Cycle	68	Tile	3	Exposure Settings		A	461	G	222	T	222	C	461
17-03-17 22:49:45.688 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37462, sync = True, waitForSettling = True)
17-03-17 22:49:45.688 -07 000000610 INF: Z Motor: Moving to -0.171490 mm, started at -0.178315 mm, distance = 6.82 um
17-03-17 22:49:45.688 -07 000000610 INF: FPGA: Xmit ZDACW 37462\n [Z Motor]
17-03-17 22:49:45.688 -07 000000618 INF: FPGA: Recv ZDACW
17-03-17 22:49:45.698 -07 000000610 INF: FPGA: 'ZDACW 37462' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:49:45.698 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:49:45.698 -07 000000501 INF: FPGA: Recv ZDACR 37462
17-03-17 22:49:45.708 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:49:45.708 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:49:45.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:49:45.858 -07 000000541 INF: FPGA: Recv ZSGSRD 35986
17-03-17 22:49:45.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:49:45.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:49:45.868 -07 000000409 INF: FPGA: Recv ZSGSRD 35982
17-03-17 22:49:45.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:49:45.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:49:45.878 -07 000000478 INF: FPGA: Recv ZSGSRD 35982
17-03-17 22:49:45.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:49:45.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:49:45.888 -07 000000618 INF: FPGA: Recv ZSGSRD 35987
17-03-17 22:49:45.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:49:45.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:49:45.898 -07 000000486 INF: FPGA: Recv ZSGSRD 35986
17-03-17 22:49:45.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:49:45.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:49:45.908 -07 000000382 INF: FPGA: Recv ZSGSRD 35986
17-03-17 22:49:45.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:49:45.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:49:45.918 -07 000000502 INF: FPGA: Recv ZSGSRD 35989
17-03-17 22:49:45.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:49:45.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:49:45.928 -07 000000547 INF: FPGA: Recv ZSGSRD 35984
17-03-17 22:49:45.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:49:45.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:49:45.938 -07 000000593 INF: FPGA: Recv ZSGSRD 35979
17-03-17 22:49:45.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:49:45.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:49:45.948 -07 000000501 INF: FPGA: Recv ZSGSRD 35983
17-03-17 22:49:45.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:49:45.958 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:49:45.958 -07 000000382 INF: FPGA: Recv ZPIEZORD 32010
17-03-17 22:49:45.968 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:49:45.968 -07 000000610 INF: Z Motor: Piezo is near 48.4 V (nominally 0 to 100 V), expect near 57.2 V, since DAC is at 5.716 V. Piezo Error = -8.8 V.
17-03-17 22:49:45.968 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.5 um, Read 10 ADC samples: Avg = 35984 (-170.6 uncal um), Error = 0.9 uncal um, Median = 35985 (-170.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35979 (-170.6 uncal um), Max = 35989 (-170.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 22:49:45.968 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35984, posNoise = 5, negNoise = 5
17-03-17 22:49:45.968 -07 000000610 INF: Z Motor: After move to -0.171490, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:49:45.968 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 22:49:45.968 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:49:45.968 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:49:45.968 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:49:45.968 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:49:45.968 -07 000000415 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:49:45.968 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:49:45.968 -07 000000486 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:49:45.968 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:49:45.968 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:49:45.968 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:49:45.968 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:49:45.968 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:49:45.978 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:49:45.978 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:49:45.978 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:49:45.978 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:49:45.988 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 22:49:45.988 -07 000000415 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 22:49:45.988 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 22:49:45.988 -07 000000486 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 22:49:45.988 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 461 461 222 222 37638 150\n [Camera]
17-03-17 22:49:46.188 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:49:46.648 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 655
17-03-17 22:49:46.648 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 655
17-03-17 22:49:46.658 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:49:46.658 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 655
17-03-17 22:49:46.658 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 655
17-03-17 22:49:46.658 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:49:46.658 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:49:46.658 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1096956120, 0x0, 391868352) start.
17-03-17 22:49:46.658 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:49:46.658 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 1132378384, 0x0, 418435064) start.
17-03-17 22:49:46.838 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37638 846
17-03-17 22:49:46.988 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP turning grn on 996
17-03-17 22:49:47.008 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:49:47.008 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 67. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1078, R2=1105, Total=2183. Warn if over 250 bubbles per interval.
17-03-17 22:49:47.038 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1096956120, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 22:49:47.038 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 22:49:47.038 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:49:47.038 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 1132378384, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 22:49:47.038 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-17 22:49:47.038 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:49:47.048 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:49:47.048 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 22:49:47.048 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:49:47.048 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 22:49:47.208 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1218
17-03-17 22:49:47.208 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1218
17-03-17 22:49:47.218 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:49:47.348 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1218
17-03-17 22:49:47.348 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1218
17-03-17 22:49:47.348 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:49:47.348 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:49:47.348 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 22:49:47.358 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:49:47.358 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 22:49:47.408 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP 1411
17-03-17 22:49:47.408 -07 000000462 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:49:47.408 -07 000000610 INF: FPGA: 'CAMDBLSNAP 461 461 222 222 37638 150' command took 2 ms to send, 1411 ms to get response, and 1417 ms overall
17-03-17 22:49:47.408 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 22:49:47.408 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.56298828125, Z-Position -0.171492201720261. ------
17-03-17 22:49:47.408 -07 000000502 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.17784 mm
17-03-17 22:49:47.408 -07 000000502 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:49:47.408 -07 000000409 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:49:47.418 -07 000000448 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-17 22:49:47.418 -07 000000448 INF: Y Motor: Moving to 62.4026 mm, started at 61.5630 mm, delta = 0.8396 mm
17-03-17 22:49:47.418 -07 000000593 INF: Z Motor: Entering MoveAbsStepped (DAC = 38850, sync = True, waitForSettling = False)
17-03-17 22:49:47.418 -07 000000593 INF: Z Motor: Moving to -0.177844 mm, started at -0.171492 mm, distance = -6.35 um
17-03-17 22:49:47.418 -07 000000482 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:49:47.418 -07 000000409 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 22:49:47.418 -07 000000448 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:49:47.418 -07 000000541 INF: FPGA: Recv YRDPOS 126082
17-03-17 22:49:47.428 -07 000000448 INF: FPGA: 'YRDPOS' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:49:47.428 -07 000000448 INF: Y Motor: Encoder = 126082 = motor step 98501.6 = 61.5635 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:49:47.428 -07 000000593 INF: FPGA: Xmit ZDACW 38850\n [Z Motor]
17-03-17 22:49:47.428 -07 000000382 INF: FPGA: Recv ZDACW
17-03-17 22:49:47.428 -07 000000448 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:49:47.428 -07 000000448 INF: Y Motor: Moving 1343 steps-20
17-03-17 22:49:47.438 -07 000000409 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:49:47.438 -07 000000593 INF: FPGA: 'ZDACW 38850' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-17 22:49:47.448 -07 000000448 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:49:47.458 -07 000000593 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:49:47.458 -07 000000462 INF: FPGA: Recv ZDACR 38850
17-03-17 22:49:47.468 -07 000000593 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:49:47.468 -07 000000593 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-17 22:49:47.638 -07 000000551 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:49:47.638 -07 000000409 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 221 ms overall
17-03-17 22:49:47.738 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 388 ms.
17-03-17 22:49:47.738 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 22:49:47.738 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:49:47.738 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 389 ms.
17-03-17 22:49:47.738 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 22:49:47.748 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:49:47.748 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:49:47.748 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:49:47.748 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 534 ms.
17-03-17 22:49:47.758 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-17 22:49:47.818 -07 000000618 INF: FPGA: Recv YMVTILE
17-03-17 22:49:47.818 -07 000000448 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 393 ms overall
17-03-17 22:49:47.858 -07 000000448 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:49:47.868 -07 000000541 INF: FPGA: Recv YRDPOS 127785
17-03-17 22:49:47.868 -07 000000448 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 22:49:47.868 -07 000000448 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:49:47.868 -07 000000448 INF: Y Motor: Position error before settling (table move) = -16 encoder counts (-0.008 mm)
17-03-17 22:49:47.868 -07 000000448 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.840 mm, average velocity = 2.131 mm/sec
17-03-17 22:49:48.818 -07 000000448 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:49:48.818 -07 000000462 INF: FPGA: Recv YRDPOS 127785
17-03-17 22:49:48.828 -07 000000448 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:49:48.828 -07 000000448 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:49:48.848 -07 000000448 INF: Y Motor: After move to 62.402607, error = -0.007587, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:49:48.848 -07 000000448 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:49:48.848 -07 000000448 INF: Y Motor: Moved to 62.3950 after 1433 ms (table move)
17-03-17 22:49:48.848 -07 000000502 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177844 mm (DAC = 38850)
17-03-17 22:49:48.848 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:49:48.858 -07 000000547 INF: FPGA: Recv ZSGSRD 36975
17-03-17 22:49:48.858 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 22:49:48.858 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:49:48.858 -07 000000462 INF: FPGA: Recv ZSGSRD 36979
17-03-17 22:49:48.868 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:49:48.868 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:49:48.868 -07 000000627 INF: FPGA: Recv ZSGSRD 36979
17-03-17 22:49:48.878 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:49:48.878 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:49:48.878 -07 000000627 INF: FPGA: Recv ZSGSRD 36983
17-03-17 22:49:48.888 -07 000000502 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:49:48.888 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:49:48.888 -07 000000415 INF: FPGA: Recv ZSGSRD 36977
17-03-17 22:49:48.898 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:49:48.898 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:49:48.898 -07 000000576 INF: FPGA: Recv ZSGSRD 36968
17-03-17 22:49:48.908 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:49:48.908 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:49:48.908 -07 000000409 INF: FPGA: Recv ZSGSRD 36972
17-03-17 22:49:48.918 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:49:48.918 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:49:48.918 -07 000000482 INF: FPGA: Recv ZSGSRD 36971
17-03-17 22:49:48.928 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:49:48.928 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:49:48.928 -07 000000462 INF: FPGA: Recv ZSGSRD 36972
17-03-17 22:49:48.938 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:49:48.938 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:49:48.938 -07 000000486 INF: FPGA: Recv ZSGSRD 36981
17-03-17 22:49:48.948 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:49:48.948 -07 000000502 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:49:48.948 -07 000000409 INF: FPGA: Recv ZPIEZORD 33306
17-03-17 22:49:48.958 -07 000000502 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:49:48.958 -07 000000502 INF: Z Motor: Piezo is near 51.2 V (nominally 0 to 100 V), expect near 59.3 V, since DAC is at 5.928 V. Piezo Error = -8.1 V.
17-03-17 22:49:48.958 -07 000000502 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.8 um, Read 10 ADC samples: Avg = 36976 (-177.0 uncal um), Error = 0.9 uncal um, Median = 36976 (-177.0 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 36968 (-176.9 uncal um), Max = 36983 (-177.0 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 22:49:48.958 -07 000000502 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36976, posNoise = 7, negNoise = 8
17-03-17 22:49:48.958 -07 000000502 INF: Z Motor: After move to -0.177844, error = -0.000021, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:49:48.958 -07 000000502 INF: Z Motor: Settle wait time = 1436 ms, measure time = 103 ms (allowed 150 ms), total time = 1539 ms
17-03-17 22:49:48.958 -07 000000502 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 22:49:49.008 -07 000000502 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1592 ms
17-03-17 22:49:49.008 -07 000000502 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:49:49.008 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:49:49.008 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:49:49.008 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:49:49.008 -07 000000486 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:49:49.008 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:49:49.008 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:49:49.008 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 22:49:49.008 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:49:49.018 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:49:49.018 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:49:49.028 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 22:49:49.028 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-17 22:49:49.028 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:49:49.068 -07 000000482 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:49:49.268 -07 000000478 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:49:49.268 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:49:49.268 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:49:49.278 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2199785120, 0x0, 559484976) start.
17-03-17 22:49:49.308 -07 000000627 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:49:49.308 -07 000000547 INF: FPGA: Recv CAMSNAP
17-03-17 22:49:49.308 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 285 ms overall
17-03-17 22:49:49.398 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2199785120, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 22:49:49.398 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:49:49.398 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:49:49.398 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 22:49:49.508 -07 000000448 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:49:49.508 -07 000000415 INF: Autofocus start
17-03-17 22:49:49.508 -07 000000415 INF: MeasureProfile start
17-03-17 22:49:49.508 -07 000000551 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:49:49.518 -07 000000448 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:49:49.518 -07 000000448 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:49:49.518 -07 000000415 INF: MeasureProfile done
17-03-17 22:49:49.518 -07 000000415 INF: X=0  Z correction [um]=-0.0713522
17-03-17 22:49:49.518 -07 000000415 INF: Autofocus finished
17-03-17 22:49:49.718 -07 000000382 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:49:49.718 -07 000000448 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:49:49.718 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.39501953125, Z-position -0.177865020164888. ----------
17-03-17 22:49:49.718 -07 000000610 INF: Cycle	68	Tile	4	Exposure Settings		A	461	G	222	T	222	C	461
17-03-17 22:49:49.728 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37347, sync = True, waitForSettling = True)
17-03-17 22:49:49.728 -07 000000610 INF: Z Motor: Moving to -0.170964 mm, started at -0.177865 mm, distance = 6.90 um
17-03-17 22:49:49.728 -07 000000610 INF: FPGA: Xmit ZDACW 37347\n [Z Motor]
17-03-17 22:49:49.728 -07 000000618 INF: FPGA: Recv ZDACW
17-03-17 22:49:49.738 -07 000000610 INF: FPGA: 'ZDACW 37347' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:49:49.738 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:49:49.738 -07 000000482 INF: FPGA: Recv ZDACR 37347
17-03-17 22:49:49.748 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:49:49.748 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:49:49.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:49:49.898 -07 000000547 INF: FPGA: Recv ZSGSRD 35903
17-03-17 22:49:49.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:49:49.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:49:49.908 -07 000000501 INF: FPGA: Recv ZSGSRD 35904
17-03-17 22:49:49.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:49:49.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:49:49.918 -07 000000623 INF: FPGA: Recv ZSGSRD 35900
17-03-17 22:49:49.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:49:49.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:49:49.928 -07 000000415 INF: FPGA: Recv ZSGSRD 35903
17-03-17 22:49:49.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:49:49.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:49:49.938 -07 000000482 INF: FPGA: Recv ZSGSRD 35904
17-03-17 22:49:49.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:49:49.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:49:49.958 -07 000000478 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 68, FrontChillerTemperature: 3.994908,
17-03-17 22:49:49.958 -07 000000618 INF: FPGA: Recv ZSGSRD 35910
17-03-17 22:49:49.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:49:49.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:49:49.968 -07 000000478 INF: FPGA: Recv ZSGSRD 35904
17-03-17 22:49:49.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:49:49.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:49:49.998 -07 000000576 INF: FPGA: Recv ZSGSRD 35901
17-03-17 22:49:50.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:49:50.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:49:50.028 -07 000000482 INF: FPGA: Recv ZSGSRD 35898
17-03-17 22:49:50.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:49:50.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:49:50.038 -07 000000547 INF: FPGA: Recv ZSGSRD 35905
17-03-17 22:49:50.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:49:50.058 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:49:50.058 -07 000000486 INF: FPGA: Recv ZPIEZORD 31918
17-03-17 22:49:50.068 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:49:50.068 -07 000000610 INF: Z Motor: Piezo is near 48.2 V (nominally 0 to 100 V), expect near 57.0 V, since DAC is at 5.699 V. Piezo Error = -8.8 V.
17-03-17 22:49:50.068 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.0 um, Read 10 ADC samples: Avg = 35903 (-170.1 uncal um), Error = 0.9 uncal um, Median = 35904 (-170.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35898 (-170.1 uncal um), Max = 35910 (-170.1 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 22:49:50.068 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35903, posNoise = 7, negNoise = 5
17-03-17 22:49:50.068 -07 000000610 INF: Z Motor: After move to -0.170964, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:49:50.068 -07 000000610 INF: Z Motor: MoveAbsStepped took 340 ms)
17-03-17 22:49:50.068 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:49:50.068 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:49:50.068 -07 000000551 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:49:50.068 -07 000000482 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:49:50.068 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:49:50.068 -07 000000478 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:49:50.068 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:49:50.068 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:49:50.068 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 22:49:50.068 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:49:50.078 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:49:50.078 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:49:50.078 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 22:49:50.078 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:49:50.078 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:49:50.078 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:49:50.088 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 22:49:50.088 -07 000000482 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 22:49:50.088 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 22:49:50.088 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 22:49:50.088 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 461 461 222 222 37524 150\n [Camera]
17-03-17 22:49:50.288 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:49:50.748 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 653
17-03-17 22:49:50.748 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 653
17-03-17 22:49:50.748 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:49:50.758 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 653
17-03-17 22:49:50.758 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 653
17-03-17 22:49:50.758 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:49:50.758 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-17 22:49:50.758 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:49:50.758 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:49:50.758 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 656674232, 0x0, 418435064) start.
17-03-17 22:49:50.938 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37524 846
17-03-17 22:49:51.088 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning grn on 996
17-03-17 22:49:51.208 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 656674232, 0x0, 418435064) end. Duration was 447 ms.
17-03-17 22:49:51.208 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 447 ms.
17-03-17 22:49:51.208 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:49:51.208 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 447 ms.
17-03-17 22:49:51.208 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 448 ms.
17-03-17 22:49:51.208 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:49:51.208 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:49:51.208 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:49:51.208 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 458 ms.
17-03-17 22:49:51.218 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 459 ms.
17-03-17 22:49:51.318 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1218
17-03-17 22:49:51.318 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1218
17-03-17 22:49:51.318 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:49:51.318 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1218
17-03-17 22:49:51.318 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1218
17-03-17 22:49:51.318 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:49:51.328 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:49:51.328 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 22:49:51.328 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:49:51.328 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 22:49:51.508 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP 1410
17-03-17 22:49:51.508 -07 000000541 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:49:51.508 -07 000000610 INF: FPGA: 'CAMDBLSNAP 461 461 222 222 37524 150' command took 2 ms to send, 1413 ms to get response, and 1417 ms overall
17-03-17 22:49:51.508 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 22:49:51.508 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.39501953125, Z-Position -0.170971840536779. ------
17-03-17 22:49:51.518 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:49:51.518 -07 000000409 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.17750 mm
17-03-17 22:49:51.518 -07 000000409 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:49:51.518 -07 000000623 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:49:51.518 -07 000000547 INF: Z Motor: Entering MoveAbsStepped (DAC = 38774, sync = True, waitForSettling = False)
17-03-17 22:49:51.518 -07 000000547 INF: Z Motor: Moving to -0.177496 mm, started at -0.170972 mm, distance = -6.52 um
17-03-17 22:49:51.518 -07 000000501 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-17 22:49:51.518 -07 000000501 INF: Y Motor: Moving to 63.2326 mm, started at 62.3950 mm, delta = 0.8376 mm
17-03-17 22:49:51.528 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:49:51.528 -07 000000547 INF: FPGA: Xmit ZDACW 38774\n [Z Motor]
17-03-17 22:49:51.528 -07 000000448 INF: FPGA: Recv ZDACW
17-03-17 22:49:51.538 -07 000000547 INF: FPGA: 'ZDACW 38774' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 22:49:51.538 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:49:51.538 -07 000000482 INF: FPGA: Recv YRDPOS 127785
17-03-17 22:49:51.548 -07 000000382 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:49:51.548 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 20 ms overall
17-03-17 22:49:51.548 -07 000000501 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:49:51.548 -07 000000501 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:49:51.548 -07 000000501 INF: Y Motor: Moving 1340 steps-16
17-03-17 22:49:51.558 -07 000000547 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:49:51.558 -07 000000478 INF: FPGA: Recv ZDACR 38774
17-03-17 22:49:51.568 -07 000000547 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:49:51.568 -07 000000547 INF: Z Motor: MoveAbsStepped took 41 ms (did NOT wait for settling yet))
17-03-17 22:49:51.568 -07 000000501 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:49:51.708 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 377 ms.
17-03-17 22:49:51.708 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-17 22:49:51.708 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:49:51.708 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 22:49:51.708 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 22:49:51.708 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:49:51.708 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:49:51.708 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:49:51.708 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 22:49:51.718 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 22:49:51.748 -07 000000486 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:49:51.748 -07 000000382 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 224 ms overall
17-03-17 22:49:51.938 -07 000000576 INF: FPGA: Recv YMVTILE
17-03-17 22:49:51.948 -07 000000501 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 399 ms overall
17-03-17 22:49:51.978 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:49:51.988 -07 000000551 INF: FPGA: Recv YRDPOS 129482
17-03-17 22:49:51.988 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 22:49:51.988 -07 000000501 INF: Y Motor: Encoder = 129482 = motor step 101157.8 = 63.2236 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:49:51.988 -07 000000501 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-17 22:49:51.988 -07 000000501 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 400 ms, distance = 0.838 mm, average velocity = 2.094 mm/sec
17-03-17 22:49:52.008 -07 000000593 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:49:52.008 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 67. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1078, R2=1105, Total=2183. Warn if over 250 bubbles per interval.
17-03-17 22:49:52.938 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:49:52.938 -07 000000618 INF: FPGA: Recv YRDPOS 129482
17-03-17 22:49:52.948 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:49:52.948 -07 000000501 INF: Y Motor: Encoder = 129482 = motor step 101157.8 = 63.2236 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:49:52.968 -07 000000501 INF: Y Motor: After move to 63.232609, error = -0.008976, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:49:52.968 -07 000000501 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:49:52.968 -07 000000501 INF: Y Motor: Moved to 63.2236 after 1445 ms (table move)
17-03-17 22:49:52.968 -07 000000409 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177496 mm (DAC = 38774)
17-03-17 22:49:52.968 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:49:52.978 -07 000000448 INF: FPGA: Recv ZSGSRD 36928
17-03-17 22:49:52.978 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 22:49:52.978 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:49:52.978 -07 000000627 INF: FPGA: Recv ZSGSRD 36911
17-03-17 22:49:52.988 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:49:52.988 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:49:52.988 -07 000000502 INF: FPGA: Recv ZSGSRD 36918
17-03-17 22:49:52.998 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:49:52.998 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:49:52.998 -07 000000623 INF: FPGA: Recv ZSGSRD 36925
17-03-17 22:49:53.008 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:49:53.008 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:49:53.008 -07 000000593 INF: FPGA: Recv ZSGSRD 36920
17-03-17 22:49:53.018 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:49:53.018 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:49:53.018 -07 000000547 INF: FPGA: Recv ZSGSRD 36928
17-03-17 22:49:53.028 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:49:53.028 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:49:53.028 -07 000000576 INF: FPGA: Recv ZSGSRD 36919
17-03-17 22:49:53.038 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:49:53.038 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:49:53.038 -07 000000551 INF: FPGA: Recv ZSGSRD 36918
17-03-17 22:49:53.048 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:49:53.048 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:49:53.048 -07 000000382 INF: FPGA: Recv ZSGSRD 36924
17-03-17 22:49:53.058 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:49:53.058 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:49:53.058 -07 000000462 INF: FPGA: Recv ZSGSRD 36916
17-03-17 22:49:53.068 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:49:53.068 -07 000000409 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:49:53.068 -07 000000576 INF: FPGA: Recv ZPIEZORD 33264
17-03-17 22:49:53.078 -07 000000409 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:49:53.078 -07 000000409 INF: Z Motor: Piezo is near 51.1 V (nominally 0 to 100 V), expect near 59.2 V, since DAC is at 5.917 V. Piezo Error = -8.1 V.
17-03-17 22:49:53.078 -07 000000409 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.5 um, Read 10 ADC samples: Avg = 36921 (-176.6 uncal um), Error = 0.9 uncal um, Median = 36920 (-176.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 36911 (-176.6 uncal um), Max = 36928 (-176.7 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-17 22:49:53.078 -07 000000409 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36921, posNoise = 7, negNoise = 10
17-03-17 22:49:53.078 -07 000000409 INF: Z Motor: After move to -0.177496, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:49:53.078 -07 000000409 INF: Z Motor: Settle wait time = 1450 ms, measure time = 102 ms (allowed 150 ms), total time = 1552 ms
17-03-17 22:49:53.078 -07 000000409 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 22:49:53.128 -07 000000409 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1609 ms
17-03-17 22:49:53.128 -07 000000409 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:49:53.128 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:49:53.128 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:49:53.128 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:49:53.128 -07 000000547 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:49:53.128 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:49:53.128 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:49:53.128 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:49:53.138 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:49:53.138 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 22:49:53.138 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:49:53.148 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 22:49:53.148 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-17 22:49:53.148 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:49:53.198 -07 000000547 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:49:53.398 -07 000000593 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:49:53.398 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:49:53.398 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:49:53.398 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2199785120, 0x0, 559484976) start.
17-03-17 22:49:53.438 -07 000000382 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:49:53.438 -07 000000576 INF: FPGA: Recv CAMSNAP
17-03-17 22:49:53.438 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 274 ms to get response, and 285 ms overall
17-03-17 22:49:53.528 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2199785120, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 22:49:53.528 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:49:53.528 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:49:53.528 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 22:49:53.538 -07 000000462 INF: Autofocus start
17-03-17 22:49:53.538 -07 000000462 INF: MeasureProfile start
17-03-17 22:49:53.538 -07 000000415 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:49:53.538 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:49:53.548 -07 000000415 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:49:53.548 -07 000000415 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:49:53.548 -07 000000462 INF: MeasureProfile done
17-03-17 22:49:53.548 -07 000000462 INF: X=0  Z correction [um]=-0.0713522
17-03-17 22:49:53.548 -07 000000462 INF: Autofocus finished
17-03-17 22:49:53.748 -07 000000576 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:49:53.748 -07 000000415 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 205 ms overall
17-03-17 22:49:53.758 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.2236328125, Z-position -0.177511688497091. ----------
17-03-17 22:49:53.758 -07 000000610 INF: Cycle	68	Tile	5	Exposure Settings		A	461	G	222	T	222	C	461
17-03-17 22:49:53.758 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37271, sync = True, waitForSettling = True)
17-03-17 22:49:53.758 -07 000000610 INF: Z Motor: Moving to -0.170616 mm, started at -0.177512 mm, distance = 6.90 um
17-03-17 22:49:53.758 -07 000000610 INF: FPGA: Xmit ZDACW 37271\n [Z Motor]
17-03-17 22:49:53.758 -07 000000547 INF: FPGA: Recv ZDACW
17-03-17 22:49:53.768 -07 000000610 INF: FPGA: 'ZDACW 37271' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:49:53.768 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:49:53.768 -07 000000478 INF: FPGA: Recv ZDACR 37271
17-03-17 22:49:53.778 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:49:53.778 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:49:53.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:49:53.928 -07 000000576 INF: FPGA: Recv ZSGSRD 35851
17-03-17 22:49:53.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:49:53.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:49:53.938 -07 000000462 INF: FPGA: Recv ZSGSRD 35850
17-03-17 22:49:53.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:49:53.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:49:53.948 -07 000000502 INF: FPGA: Recv ZSGSRD 35849
17-03-17 22:49:53.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:49:53.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:49:53.958 -07 000000547 INF: FPGA: Recv ZSGSRD 35852
17-03-17 22:49:53.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:49:53.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:49:53.968 -07 000000478 INF: FPGA: Recv ZSGSRD 35849
17-03-17 22:49:53.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:49:53.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:49:53.978 -07 000000576 INF: FPGA: Recv ZSGSRD 35847
17-03-17 22:49:53.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:49:53.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:49:53.988 -07 000000462 INF: FPGA: Recv ZSGSRD 35851
17-03-17 22:49:53.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:49:53.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:49:53.998 -07 000000415 INF: FPGA: Recv ZSGSRD 35848
17-03-17 22:49:54.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:49:54.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:49:54.008 -07 000000482 INF: FPGA: Recv ZSGSRD 35855
17-03-17 22:49:54.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:49:54.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:49:54.018 -07 000000593 INF: FPGA: Recv ZSGSRD 35851
17-03-17 22:49:54.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:49:54.028 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:49:54.028 -07 000000576 INF: FPGA: Recv ZPIEZORD 31832
17-03-17 22:49:54.038 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:49:54.038 -07 000000610 INF: Z Motor: Piezo is near 48.0 V (nominally 0 to 100 V), expect near 56.9 V, since DAC is at 5.687 V. Piezo Error = -8.9 V.
17-03-17 22:49:54.038 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.6 um, Read 10 ADC samples: Avg = 35850 (-169.8 uncal um), Error = 0.9 uncal um, Median = 35850 (-169.8 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35847 (-169.7 uncal um), Max = 35855 (-169.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 22:49:54.038 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35850, posNoise = 5, negNoise = 3
17-03-17 22:49:54.038 -07 000000610 INF: Z Motor: After move to -0.170616, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:49:54.038 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 22:49:54.038 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:49:54.038 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:49:54.038 -07 000000482 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:49:54.038 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:49:54.038 -07 000000415 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:49:54.038 -07 000000409 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:49:54.038 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:49:54.038 -07 000000409 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:49:54.038 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:49:54.038 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:49:54.038 -07 000000409 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:49:54.038 -07 000000409 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:49:54.048 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:49:54.048 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:49:54.048 -07 000000409 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 22:49:54.048 -07 000000409 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:49:54.058 -07 000000409 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 22:49:54.058 -07 000000409 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 22:49:54.058 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 22:49:54.058 -07 000000415 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 22:49:54.058 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 461 461 222 222 37448 150\n [Camera]
17-03-17 22:49:54.258 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning red on 193
17-03-17 22:49:54.718 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 653
17-03-17 22:49:54.718 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 653
17-03-17 22:49:54.718 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:49:54.718 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 653
17-03-17 22:49:54.718 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 653
17-03-17 22:49:54.718 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:49:54.718 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:49:54.718 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 2334002848, 0x0, 418435064) start.
17-03-17 22:49:54.728 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:49:54.728 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 2214461200, 0x0, 391868352) start.
17-03-17 22:49:54.908 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37448 846
17-03-17 22:49:55.058 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning grn on 996
17-03-17 22:49:55.108 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 2214461200, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 22:49:55.108 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 22:49:55.108 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:49:55.108 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 2334002848, 0x0, 418435064) end. Duration was 386 ms.
17-03-17 22:49:55.108 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 22:49:55.108 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:49:55.108 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:49:55.108 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 22:49:55.118 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:49:55.118 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 22:49:55.278 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1218
17-03-17 22:49:55.288 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1218
17-03-17 22:49:55.288 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:49:55.288 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:49:55.288 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 2369425112, 0x0, 391868352) start.
17-03-17 22:49:55.288 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1218
17-03-17 22:49:55.288 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1218
17-03-17 22:49:55.288 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:49:55.288 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:49:55.288 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 1094749800, 0x0, 418435064) start.
17-03-17 22:49:55.348 -07 000000409 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 68, FrontChillerTemperature: 4.000345,
17-03-17 22:49:55.478 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP 1411
17-03-17 22:49:55.478 -07 000000409 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:49:55.478 -07 000000610 INF: FPGA: 'CAMDBLSNAP 461 461 222 222 37448 150' command took 2 ms to send, 1411 ms to get response, and 1418 ms overall
17-03-17 22:49:55.478 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 22:49:55.478 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.2236328125, Z-Position -0.170631357293265. ------
17-03-17 22:49:55.478 -07 000000593 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:49:55.478 -07 000000576 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.17696 mm
17-03-17 22:49:55.478 -07 000000576 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:49:55.488 -07 000000382 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-17 22:49:55.488 -07 000000382 INF: Y Motor: Moving to 64.0626 mm, started at 63.2236 mm, delta = 0.8390 mm
17-03-17 22:49:55.488 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:49:55.488 -07 000000623 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:49:55.488 -07 000000593 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 22:49:55.488 -07 000000478 INF: Z Motor: Entering MoveAbsStepped (DAC = 38657, sync = True, waitForSettling = False)
17-03-17 22:49:55.488 -07 000000478 INF: Z Motor: Moving to -0.176960 mm, started at -0.170631 mm, distance = -6.33 um
17-03-17 22:49:55.488 -07 000000501 INF: FPGA: Recv YRDPOS 129482
17-03-17 22:49:55.498 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:49:55.498 -07 000000382 INF: Y Motor: Encoder = 129482 = motor step 101157.8 = 63.2236 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:49:55.498 -07 000000382 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:49:55.498 -07 000000382 INF: Y Motor: Moving 1342 steps-18
17-03-17 22:49:55.498 -07 000000593 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:49:55.508 -07 000000478 INF: FPGA: Xmit ZDACW 38657\n [Z Motor]
17-03-17 22:49:55.508 -07 000000623 INF: FPGA: Recv ZDACW
17-03-17 22:49:55.518 -07 000000382 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:49:55.518 -07 000000478 INF: FPGA: 'ZDACW 38657' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-17 22:49:55.528 -07 000000478 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:49:55.528 -07 000000627 INF: FPGA: Recv ZDACR 38657
17-03-17 22:49:55.538 -07 000000478 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:49:55.538 -07 000000478 INF: Z Motor: MoveAbsStepped took 48 ms (did NOT wait for settling yet))
17-03-17 22:49:55.668 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 1094749800, 0x0, 418435064) end. Duration was 381 ms.
17-03-17 22:49:55.668 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-17 22:49:55.668 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:49:55.668 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 2369425112, 0x0, 391868352) end. Duration was 385 ms.
17-03-17 22:49:55.668 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 22:49:55.668 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:49:55.668 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:49:55.678 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 22:49:55.678 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 22:49:55.678 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 22:49:55.698 -07 000000409 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:49:55.698 -07 000000593 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 193 ms to get response, and 211 ms overall
17-03-17 22:49:55.888 -07 000000478 INF: FPGA: Recv YMVTILE
17-03-17 22:49:55.888 -07 000000382 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 22:49:55.928 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:49:55.938 -07 000000618 INF: FPGA: Recv YRDPOS 131187
17-03-17 22:49:55.938 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 22:49:55.938 -07 000000382 INF: Y Motor: Encoder = 131187 = motor step 102489.8 = 64.0562 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:49:55.938 -07 000000382 INF: Y Motor: Position error before settling (table move) = -13 encoder counts (-0.006 mm)
17-03-17 22:49:55.938 -07 000000382 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.839 mm, average velocity = 2.113 mm/sec
17-03-17 22:49:56.888 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:49:56.888 -07 000000551 INF: FPGA: Recv YRDPOS 131188
17-03-17 22:49:56.898 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:49:56.898 -07 000000382 INF: Y Motor: Encoder = 131188 = motor step 102490.6 = 64.0566 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:49:56.918 -07 000000382 INF: Y Motor: After move to 64.062607, error = -0.005966, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:49:56.918 -07 000000382 INF: Y Motor: Position error after settling (table move) = -12 encoder counts (-0.006 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 22:49:56.918 -07 000000382 INF: Y Motor: Moved to 64.0566 after 1433 ms (table move)
17-03-17 22:49:56.918 -07 000000576 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176960 mm (DAC = 38657)
17-03-17 22:49:56.918 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:49:56.928 -07 000000502 INF: FPGA: Recv ZSGSRD 36838
17-03-17 22:49:56.928 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-17 22:49:56.928 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:49:56.928 -07 000000415 INF: FPGA: Recv ZSGSRD 36831
17-03-17 22:49:56.938 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:49:56.938 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:49:56.938 -07 000000501 INF: FPGA: Recv ZSGSRD 36837
17-03-17 22:49:56.948 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:49:56.948 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:49:56.948 -07 000000627 INF: FPGA: Recv ZSGSRD 36837
17-03-17 22:49:56.958 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:49:56.958 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:49:56.958 -07 000000486 INF: FPGA: Recv ZSGSRD 36839
17-03-17 22:49:56.968 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:49:56.968 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:49:56.968 -07 000000502 INF: FPGA: Recv ZSGSRD 36836
17-03-17 22:49:56.978 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:49:56.978 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:49:56.978 -07 000000501 INF: FPGA: Recv ZSGSRD 36833
17-03-17 22:49:56.988 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:49:56.988 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:49:56.988 -07 000000627 INF: FPGA: Recv ZSGSRD 36835
17-03-17 22:49:56.998 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:49:56.998 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:49:56.998 -07 000000486 INF: FPGA: Recv ZSGSRD 36835
17-03-17 22:49:57.008 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:49:57.008 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:49:57.008 -07 000000448 INF: FPGA: Recv ZSGSRD 36836
17-03-17 22:49:57.008 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:49:57.008 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 67. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1078, R2=1105, Total=2183. Warn if over 250 bubbles per interval.
17-03-17 22:49:57.018 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:49:57.018 -07 000000576 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:49:57.018 -07 000000551 INF: FPGA: Recv ZPIEZORD 33134
17-03-17 22:49:57.028 -07 000000576 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:49:57.028 -07 000000576 INF: Z Motor: Piezo is near 50.8 V (nominally 0 to 100 V), expect near 59.0 V, since DAC is at 5.899 V. Piezo Error = -8.2 V.
17-03-17 22:49:57.028 -07 000000576 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.0 um, Read 10 ADC samples: Avg = 36836 (-176.1 uncal um), Error = 0.9 uncal um, Median = 36836 (-176.1 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 36831 (-176.0 uncal um), Max = 36839 (-176.1 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 22:49:57.028 -07 000000576 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36836, posNoise = 3, negNoise = 5
17-03-17 22:49:57.028 -07 000000576 INF: Z Motor: After move to -0.176960, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:49:57.028 -07 000000576 INF: Z Motor: Settle wait time = 1437 ms, measure time = 101 ms (allowed 150 ms), total time = 1538 ms
17-03-17 22:49:57.028 -07 000000576 INF: Z Motor: Waiting extra 49 ms after reading position to reach expected total of 150 ms
17-03-17 22:49:57.078 -07 000000576 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1591 ms
17-03-17 22:49:57.078 -07 000000576 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:49:57.078 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:49:57.078 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:49:57.078 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:49:57.078 -07 000000448 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:49:57.078 -07 000000623 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:49:57.078 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:49:57.078 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 22:49:57.078 -07 000000623 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:49:57.088 -07 000000623 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:49:57.088 -07 000000623 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:49:57.088 -07 000000623 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 22:49:57.088 -07 000000623 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 22:49:57.098 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:49:57.138 -07 000000462 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:49:57.338 -07 000000618 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:49:57.338 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:49:57.338 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:49:57.338 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 619151688, 0x0, 559484976) start.
17-03-17 22:49:57.378 -07 000000462 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:49:57.378 -07 000000415 INF: FPGA: Recv CAMSNAP
17-03-17 22:49:57.378 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 284 ms overall
17-03-17 22:49:57.458 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 619151688, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 22:49:57.458 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:49:57.458 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 22:49:57.458 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-17 22:49:57.478 -07 000000593 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:49:57.478 -07 000000382 INF: Autofocus start
17-03-17 22:49:57.478 -07 000000382 INF: MeasureProfile start
17-03-17 22:49:57.478 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:49:57.488 -07 000000593 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:49:57.488 -07 000000593 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:49:57.498 -07 000000382 INF: MeasureProfile done
17-03-17 22:49:57.498 -07 000000382 INF: X=64  Z correction [um]=0.2557664
17-03-17 22:49:57.498 -07 000000382 INF: Autofocus finished
17-03-17 22:49:57.688 -07 000000627 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:49:57.688 -07 000000593 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:49:57.688 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.056640625, Z-position -0.176965630465042. ----------
17-03-17 22:49:57.688 -07 000000610 INF: Cycle	68	Tile	6	Exposure Settings		A	461	G	222	T	222	C	461
17-03-17 22:49:57.698 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37225, sync = True, waitForSettling = True)
17-03-17 22:49:57.698 -07 000000610 INF: Z Motor: Moving to -0.170405 mm, started at -0.176966 mm, distance = 6.56 um
17-03-17 22:49:57.698 -07 000000610 INF: FPGA: Xmit ZDACW 37225\n [Z Motor]
17-03-17 22:49:57.698 -07 000000462 INF: FPGA: Recv ZDACW
17-03-17 22:49:57.708 -07 000000610 INF: FPGA: 'ZDACW 37225' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:49:57.708 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:49:57.708 -07 000000623 INF: FPGA: Recv ZDACR 37225
17-03-17 22:49:57.718 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:49:57.718 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:49:57.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:49:57.868 -07 000000627 INF: FPGA: Recv ZSGSRD 35816
17-03-17 22:49:57.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:49:57.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:49:57.878 -07 000000486 INF: FPGA: Recv ZSGSRD 35820
17-03-17 22:49:57.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:49:57.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:49:57.888 -07 000000415 INF: FPGA: Recv ZSGSRD 35816
17-03-17 22:49:57.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:49:57.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:49:57.898 -07 000000462 INF: FPGA: Recv ZSGSRD 35812
17-03-17 22:49:57.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:49:57.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:49:57.908 -07 000000486 INF: FPGA: Recv ZSGSRD 35823
17-03-17 22:49:57.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:49:57.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:49:57.918 -07 000000623 INF: FPGA: Recv ZSGSRD 35819
17-03-17 22:49:57.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:49:57.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:49:57.928 -07 000000382 INF: FPGA: Recv ZSGSRD 35815
17-03-17 22:49:57.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:49:57.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:49:57.938 -07 000000502 INF: FPGA: Recv ZSGSRD 35816
17-03-17 22:49:57.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:49:57.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:49:57.948 -07 000000409 INF: FPGA: Recv ZSGSRD 35811
17-03-17 22:49:57.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:49:57.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:49:57.958 -07 000000627 INF: FPGA: Recv ZSGSRD 35814
17-03-17 22:49:57.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:49:57.968 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:49:57.968 -07 000000623 INF: FPGA: Recv ZPIEZORD 31758
17-03-17 22:49:57.978 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:49:57.978 -07 000000610 INF: Z Motor: Piezo is near 47.8 V (nominally 0 to 100 V), expect near 56.8 V, since DAC is at 5.680 V. Piezo Error = -9.0 V.
17-03-17 22:49:57.978 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.4 um, Read 10 ADC samples: Avg = 35816 (-169.5 uncal um), Error = 0.9 uncal um, Median = 35816 (-169.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35811 (-169.5 uncal um), Max = 35823 (-169.6 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 22:49:57.978 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35816, posNoise = 7, negNoise = 5
17-03-17 22:49:57.978 -07 000000610 INF: Z Motor: After move to -0.170405, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:49:57.978 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 22:49:57.978 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:49:57.978 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:49:57.978 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:49:57.978 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:49:57.978 -07 000000409 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:49:57.978 -07 000000409 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:49:57.978 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:49:57.978 -07 000000448 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:49:57.978 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:49:57.978 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:49:57.978 -07 000000409 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:49:57.978 -07 000000409 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:49:57.978 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 22:49:57.978 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:49:57.988 -07 000000409 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 22:49:57.988 -07 000000409 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:49:57.988 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 22:49:57.988 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 22:49:57.988 -07 000000409 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 22:49:57.988 -07 000000409 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 22:49:57.998 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 461 461 222 222 37402 150\n [Camera]
17-03-17 22:49:58.198 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:49:58.658 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 653
17-03-17 22:49:58.658 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 653
17-03-17 22:49:58.658 -07 000000409 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:49:58.658 -07 000000409 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:49:58.658 -07 000000409 INF: Camera: sBCa_ReadImage(785074288, 1130172064, 0x0, 391868352) start.
17-03-17 22:49:58.658 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 653
17-03-17 22:49:58.658 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 653
17-03-17 22:49:58.658 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:49:58.658 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:49:58.658 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1165594328, 0x0, 418435064) start.
17-03-17 22:49:58.848 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37402 846
17-03-17 22:49:58.998 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning grn on 996
17-03-17 22:49:59.048 -07 000000409 INF: Camera: sBCa_ReadImage(785074288, 1130172064, 0x0, 391868352) end. Duration was 391 ms.
17-03-17 22:49:59.048 -07 000000409 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 22:49:59.048 -07 000000409 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:49:59.048 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1165594328, 0x0, 418435064) end. Duration was 389 ms.
17-03-17 22:49:59.048 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 22:49:59.048 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:49:59.058 -07 000000409 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:49:59.058 -07 000000409 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 22:49:59.058 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:49:59.058 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 22:49:59.218 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1218
17-03-17 22:49:59.218 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1218
17-03-17 22:49:59.218 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:49:59.218 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:49:59.218 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 22:49:59.218 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1218
17-03-17 22:49:59.218 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1218
17-03-17 22:49:59.228 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:49:59.228 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:49:59.238 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) start.
17-03-17 22:49:59.408 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP 1411
17-03-17 22:49:59.408 -07 000000547 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:49:59.408 -07 000000610 INF: FPGA: 'CAMDBLSNAP 461 461 222 222 37402 150' command took 2 ms to send, 1408 ms to get response, and 1418 ms overall
17-03-17 22:49:59.418 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 22:49:59.418 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.056640625, Z-Position -0.170412934080445. ------
17-03-17 22:49:59.418 -07 000000478 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.17691 mm
17-03-17 22:49:59.418 -07 000000478 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:49:59.418 -07 000000551 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:49:59.418 -07 000000409 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-17 22:49:59.418 -07 000000409 INF: Y Motor: Moving to 64.8926 mm, started at 64.0566 mm, delta = 0.8360 mm
17-03-17 22:49:59.418 -07 000000482 INF: Z Motor: Entering MoveAbsStepped (DAC = 38646, sync = True, waitForSettling = False)
17-03-17 22:49:59.418 -07 000000482 INF: Z Motor: Moving to -0.176910 mm, started at -0.170413 mm, distance = -6.50 um
17-03-17 22:49:59.418 -07 000000627 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:49:59.428 -07 000000409 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:49:59.428 -07 000000551 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:49:59.428 -07 000000618 INF: FPGA: Recv YRDPOS 131188
17-03-17 22:49:59.438 -07 000000409 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 22:49:59.438 -07 000000482 INF: FPGA: Xmit ZDACW 38646\n [Z Motor]
17-03-17 22:49:59.438 -07 000000409 INF: Y Motor: Encoder = 131188 = motor step 102490.6 = 64.0566 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:49:59.438 -07 000000409 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:49:59.438 -07 000000409 INF: Y Motor: Moving 1338 steps-13
17-03-17 22:49:59.438 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 22:49:59.448 -07 000000482 INF: FPGA: 'ZDACW 38646' command took 0 ms to send, 0 ms to get response, and 20 ms overall
17-03-17 22:49:59.448 -07 000000551 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:49:59.458 -07 000000409 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:49:59.468 -07 000000482 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:49:59.468 -07 000000547 INF: FPGA: Recv ZDACR 38646
17-03-17 22:49:59.478 -07 000000482 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:49:59.478 -07 000000482 INF: Z Motor: MoveAbsStepped took 50 ms (did NOT wait for settling yet))
17-03-17 22:49:59.618 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 400 ms.
17-03-17 22:49:59.618 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 22:49:59.618 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:49:59.628 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 9 ms.
17-03-17 22:49:59.628 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-17 22:49:59.638 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) end. Duration was 399 ms.
17-03-17 22:49:59.638 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-17 22:49:59.638 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:49:59.638 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:49:59.648 -07 000000482 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:49:59.648 -07 000000551 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-17 22:49:59.648 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 426 ms.
17-03-17 22:49:59.828 -07 000000627 INF: FPGA: Recv YMVTILE
17-03-17 22:49:59.828 -07 000000409 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 22:49:59.868 -07 000000409 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:49:59.878 -07 000000501 INF: FPGA: Recv YRDPOS 132871
17-03-17 22:49:59.878 -07 000000409 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 22:49:59.878 -07 000000409 INF: Y Motor: Encoder = 132871 = motor step 103805.5 = 64.8784 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:49:59.878 -07 000000409 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-17 22:49:59.878 -07 000000409 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.836 mm, average velocity = 2.100 mm/sec
17-03-17 22:50:00.708 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 68, FrontChillerTemperature: 4.011254,
17-03-17 22:50:00.828 -07 000000409 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:50:00.828 -07 000000501 INF: FPGA: Recv YRDPOS 132871
17-03-17 22:50:00.838 -07 000000409 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:00.838 -07 000000409 INF: Y Motor: Encoder = 132871 = motor step 103805.5 = 64.8784 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:50:00.858 -07 000000409 INF: Y Motor: After move to 64.892609, error = -0.014191, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:50:00.858 -07 000000409 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:50:00.858 -07 000000409 INF: Y Motor: Moved to 64.8784 after 1437 ms (table move)
17-03-17 22:50:00.868 -07 000000478 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176910 mm (DAC = 38646)
17-03-17 22:50:00.868 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:00.868 -07 000000382 INF: FPGA: Recv ZSGSRD 36829
17-03-17 22:50:00.878 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:00.878 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:00.878 -07 000000501 INF: FPGA: Recv ZSGSRD 36835
17-03-17 22:50:00.888 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:00.888 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:00.888 -07 000000462 INF: FPGA: Recv ZSGSRD 36836
17-03-17 22:50:00.898 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:00.898 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:00.898 -07 000000627 INF: FPGA: Recv ZSGSRD 36825
17-03-17 22:50:00.908 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:00.908 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:00.908 -07 000000618 INF: FPGA: Recv ZSGSRD 36826
17-03-17 22:50:00.918 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:00.918 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:00.918 -07 000000501 INF: FPGA: Recv ZSGSRD 36829
17-03-17 22:50:00.928 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:00.928 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:00.928 -07 000000502 INF: FPGA: Recv ZSGSRD 36823
17-03-17 22:50:00.938 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:00.938 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:00.938 -07 000000593 INF: FPGA: Recv ZSGSRD 36822
17-03-17 22:50:00.948 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:00.948 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:00.948 -07 000000482 INF: FPGA: Recv ZSGSRD 36831
17-03-17 22:50:00.958 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:00.958 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:00.958 -07 000000462 INF: FPGA: Recv ZSGSRD 36828
17-03-17 22:50:00.968 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:00.968 -07 000000478 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:50:00.968 -07 000000486 INF: FPGA: Recv ZPIEZORD 33118
17-03-17 22:50:00.978 -07 000000478 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:00.978 -07 000000478 INF: Z Motor: Piezo is near 50.7 V (nominally 0 to 100 V), expect near 59.0 V, since DAC is at 5.897 V. Piezo Error = -8.2 V.
17-03-17 22:50:00.978 -07 000000478 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.9 um, Read 10 ADC samples: Avg = 36828 (-176.0 uncal um), Error = 0.9 uncal um, Median = 36828 (-176.0 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36822 (-176.0 uncal um), Max = 36836 (-176.1 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 22:50:00.978 -07 000000478 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36828, posNoise = 8, negNoise = 6
17-03-17 22:50:00.978 -07 000000478 INF: Z Motor: After move to -0.176910, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:50:00.978 -07 000000478 INF: Z Motor: Settle wait time = 1440 ms, measure time = 112 ms (allowed 150 ms), total time = 1552 ms
17-03-17 22:50:00.978 -07 000000478 INF: Z Motor: Waiting extra 38 ms after reading position to reach expected total of 150 ms
17-03-17 22:50:01.018 -07 000000478 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1593 ms
17-03-17 22:50:01.018 -07 000000478 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:50:01.018 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:50:01.018 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:50:01.018 -07 000000409 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:50:01.018 -07 000000415 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:50:01.018 -07 000000627 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:50:01.018 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:50:01.018 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 22:50:01.018 -07 000000627 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:50:01.018 -07 000000627 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:50:01.028 -07 000000627 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:50:01.028 -07 000000627 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 22:50:01.028 -07 000000627 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 22:50:01.038 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:50:01.078 -07 000000502 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:50:01.278 -07 000000623 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:50:01.278 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:50:01.278 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:50:01.278 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2404847376, 0x0, 559484976) start.
17-03-17 22:50:01.318 -07 000000593 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:50:01.318 -07 000000448 INF: FPGA: Recv CAMSNAP
17-03-17 22:50:01.318 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 285 ms overall
17-03-17 22:50:01.398 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2404847376, 0x0, 559484976) end. Duration was 118 ms.
17-03-17 22:50:01.398 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:50:01.408 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:50:01.408 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 122 ms.
17-03-17 22:50:01.418 -07 000000409 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:50:01.418 -07 000000462 INF: Autofocus start
17-03-17 22:50:01.418 -07 000000462 INF: MeasureProfile start
17-03-17 22:50:01.418 -07 000000593 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:50:01.428 -07 000000409 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 22:50:01.428 -07 000000409 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:50:01.438 -07 000000462 INF: MeasureProfile done
17-03-17 22:50:01.438 -07 000000462 INF: X=-16  Z correction [um]=-0.1496812
17-03-17 22:50:01.438 -07 000000462 INF: Autofocus finished
17-03-17 22:50:01.628 -07 000000593 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:50:01.628 -07 000000409 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:50:01.628 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87841796875, Z-position -0.176914236767907. ----------
17-03-17 22:50:01.628 -07 000000610 INF: Cycle	68	Tile	7	Exposure Settings		A	461	G	222	T	222	C	461
17-03-17 22:50:01.638 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37126, sync = True, waitForSettling = True)
17-03-17 22:50:01.638 -07 000000610 INF: Z Motor: Moving to -0.169952 mm, started at -0.176914 mm, distance = 6.96 um
17-03-17 22:50:01.638 -07 000000610 INF: FPGA: Xmit ZDACW 37126\n [Z Motor]
17-03-17 22:50:01.638 -07 000000502 INF: FPGA: Recv ZDACW
17-03-17 22:50:01.648 -07 000000610 INF: FPGA: 'ZDACW 37126' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:01.648 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:50:01.648 -07 000000593 INF: FPGA: Recv ZDACR 37126
17-03-17 22:50:01.658 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:01.658 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:50:01.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:01.808 -07 000000593 INF: FPGA: Recv ZSGSRD 35744
17-03-17 22:50:01.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:50:01.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:01.818 -07 000000382 INF: FPGA: Recv ZSGSRD 35747
17-03-17 22:50:01.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:01.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:01.828 -07 000000627 INF: FPGA: Recv ZSGSRD 35746
17-03-17 22:50:01.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:01.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:01.838 -07 000000462 INF: FPGA: Recv ZSGSRD 35748
17-03-17 22:50:01.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:01.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:01.848 -07 000000409 INF: FPGA: Recv ZSGSRD 35750
17-03-17 22:50:01.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:01.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:01.858 -07 000000415 INF: FPGA: Recv ZSGSRD 35742
17-03-17 22:50:01.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:01.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:01.868 -07 000000478 INF: FPGA: Recv ZSGSRD 35749
17-03-17 22:50:01.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:01.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:01.878 -07 000000627 INF: FPGA: Recv ZSGSRD 35748
17-03-17 22:50:01.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:01.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:01.888 -07 000000623 INF: FPGA: Recv ZSGSRD 35745
17-03-17 22:50:01.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:01.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:01.898 -07 000000448 INF: FPGA: Recv ZSGSRD 35745
17-03-17 22:50:01.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:01.908 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:50:01.908 -07 000000501 INF: FPGA: Recv ZPIEZORD 31687
17-03-17 22:50:01.918 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:01.918 -07 000000610 INF: Z Motor: Piezo is near 47.7 V (nominally 0 to 100 V), expect near 56.7 V, since DAC is at 5.665 V. Piezo Error = -9.0 V.
17-03-17 22:50:01.918 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.0 um, Read 10 ADC samples: Avg = 35746 (-169.1 uncal um), Error = 0.9 uncal um, Median = 35746 (-169.1 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35742 (-169.1 uncal um), Max = 35750 (-169.1 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 22:50:01.918 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35746, posNoise = 4, negNoise = 4
17-03-17 22:50:01.918 -07 000000610 INF: Z Motor: After move to -0.169952, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:50:01.918 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 22:50:01.918 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:50:01.918 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:50:01.918 -07 000000541 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:50:01.918 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:50:01.918 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:50:01.918 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:50:01.918 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:50:01.918 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:50:01.918 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:50:01.918 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:50:01.918 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:50:01.918 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:50:01.928 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 22:50:01.928 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:50:01.928 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 22:50:01.928 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:50:01.938 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 22:50:01.938 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 22:50:01.938 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 22:50:01.938 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 22:50:01.938 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 461 461 222 222 37303 150\n [Camera]
17-03-17 22:50:02.008 -07 000000478 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:50:02.008 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 67. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1078, R2=1105, Total=2183. Warn if over 250 bubbles per interval.
17-03-17 22:50:02.148 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:50:02.608 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 653
17-03-17 22:50:02.608 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 653
17-03-17 22:50:02.608 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:50:02.608 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:50:02.608 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 1476890328, 0x0, 391868352) start.
17-03-17 22:50:02.608 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 653
17-03-17 22:50:02.608 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 653
17-03-17 22:50:02.608 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:50:02.608 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:50:02.608 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-17 22:50:02.798 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37303 846
17-03-17 22:50:02.948 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning grn on 996
17-03-17 22:50:02.988 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 22:50:02.988 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-17 22:50:02.988 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:50:02.988 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:50:02.988 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 1476890328, 0x0, 391868352) end. Duration was 383 ms.
17-03-17 22:50:02.988 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 22:50:02.988 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:50:02.998 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-17 22:50:02.998 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:50:02.998 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 22:50:03.168 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1218
17-03-17 22:50:03.168 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1218
17-03-17 22:50:03.168 -07 000000409 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:50:03.168 -07 000000409 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:50:03.168 -07 000000409 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) start.
17-03-17 22:50:03.178 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1218
17-03-17 22:50:03.178 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1218
17-03-17 22:50:03.178 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:50:03.178 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:50:03.178 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2503642840, 0x0, 418435064) start.
17-03-17 22:50:03.358 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP 1410
17-03-17 22:50:03.368 -07 000000541 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:50:03.368 -07 000000610 INF: FPGA: 'CAMDBLSNAP 461 461 222 222 37303 150' command took 2 ms to send, 1410 ms to get response, and 1421 ms overall
17-03-17 22:50:03.368 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 22:50:03.368 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.87841796875, Z-Position -0.169963239230522. ------
17-03-17 22:50:03.368 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:50:03.368 -07 000000627 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.17650 mm
17-03-17 22:50:03.368 -07 000000627 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:50:03.368 -07 000000551 INF: Z Motor: Entering MoveAbsStepped (DAC = 38556, sync = True, waitForSettling = False)
17-03-17 22:50:03.368 -07 000000551 INF: Z Motor: Moving to -0.176498 mm, started at -0.169963 mm, distance = -6.53 um
17-03-17 22:50:03.368 -07 000000623 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:50:03.368 -07 000000547 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-17 22:50:03.368 -07 000000547 INF: Y Motor: Moving to 65.7226 mm, started at 64.8784 mm, delta = 0.8442 mm
17-03-17 22:50:03.378 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 22:50:03.378 -07 000000551 INF: FPGA: Xmit ZDACW 38556\n [Z Motor]
17-03-17 22:50:03.378 -07 000000541 INF: FPGA: Recv ZDACW
17-03-17 22:50:03.388 -07 000000551 INF: FPGA: 'ZDACW 38556' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 22:50:03.388 -07 000000551 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:50:03.388 -07 000000462 INF: FPGA: Recv ZDACR 38556
17-03-17 22:50:03.398 -07 000000551 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:03.398 -07 000000551 INF: Z Motor: MoveAbsStepped took 21 ms (did NOT wait for settling yet))
17-03-17 22:50:03.398 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:50:03.398 -07 000000623 INF: FPGA: Recv YRDPOS 132871
17-03-17 22:50:03.408 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-17 22:50:03.408 -07 000000547 INF: Y Motor: Encoder = 132871 = motor step 103805.5 = 64.8784 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:50:03.408 -07 000000547 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:50:03.408 -07 000000547 INF: Y Motor: Moving 1351 steps-29
17-03-17 22:50:03.408 -07 000000502 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:50:03.418 -07 000000547 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:50:03.578 -07 000000409 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) end. Duration was 401 ms.
17-03-17 22:50:03.578 -07 000000409 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 22:50:03.578 -07 000000409 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:50:03.578 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2503642840, 0x0, 418435064) end. Duration was 399 ms.
17-03-17 22:50:03.578 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 22:50:03.578 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:50:03.578 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:50:03.578 -07 000000409 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 22:50:03.578 -07 000000409 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-17 22:50:03.588 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-17 22:50:03.608 -07 000000541 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:50:03.608 -07 000000502 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 193 ms to get response, and 233 ms overall
17-03-17 22:50:03.788 -07 000000576 INF: FPGA: Recv YMVTILE
17-03-17 22:50:03.788 -07 000000547 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-17 22:50:03.828 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:50:03.838 -07 000000618 INF: FPGA: Recv YRDPOS 134581
17-03-17 22:50:03.838 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 22:50:03.838 -07 000000547 INF: Y Motor: Encoder = 134581 = motor step 105141.4 = 65.7134 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:50:03.838 -07 000000547 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-17 22:50:03.838 -07 000000547 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.844 mm, average velocity = 2.181 mm/sec
17-03-17 22:50:04.788 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:50:04.788 -07 000000502 INF: FPGA: Recv YRDPOS 134581
17-03-17 22:50:04.798 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:50:04.798 -07 000000547 INF: Y Motor: Encoder = 134581 = motor step 105141.4 = 65.7134 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:50:04.828 -07 000000547 INF: Y Motor: After move to 65.722610, error = -0.009232, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:50:04.828 -07 000000547 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:50:04.828 -07 000000547 INF: Y Motor: Moved to 65.7134 after 1452 ms (table move)
17-03-17 22:50:04.828 -07 000000627 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176498 mm (DAC = 38556)
17-03-17 22:50:04.828 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:04.828 -07 000000478 INF: FPGA: Recv ZSGSRD 36767
17-03-17 22:50:04.838 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:50:04.838 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:04.838 -07 000000623 INF: FPGA: Recv ZSGSRD 36763
17-03-17 22:50:04.848 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:04.848 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:04.848 -07 000000415 INF: FPGA: Recv ZSGSRD 36769
17-03-17 22:50:04.858 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:04.858 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:04.858 -07 000000618 INF: FPGA: Recv ZSGSRD 36759
17-03-17 22:50:04.868 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:04.868 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:04.868 -07 000000409 INF: FPGA: Recv ZSGSRD 36768
17-03-17 22:50:04.878 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:04.878 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:04.878 -07 000000448 INF: FPGA: Recv ZSGSRD 36762
17-03-17 22:50:04.888 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:04.888 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:04.888 -07 000000541 INF: FPGA: Recv ZSGSRD 36761
17-03-17 22:50:04.898 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:04.898 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:04.898 -07 000000547 INF: FPGA: Recv ZSGSRD 36763
17-03-17 22:50:04.908 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:04.908 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:04.908 -07 000000382 INF: FPGA: Recv ZSGSRD 36768
17-03-17 22:50:04.918 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:04.918 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:04.918 -07 000000478 INF: FPGA: Recv ZSGSRD 36769
17-03-17 22:50:04.928 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:04.928 -07 000000627 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:50:04.928 -07 000000593 INF: FPGA: Recv ZPIEZORD 33091
17-03-17 22:50:04.938 -07 000000627 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:04.938 -07 000000627 INF: Z Motor: Piezo is near 50.7 V (nominally 0 to 100 V), expect near 58.8 V, since DAC is at 5.883 V. Piezo Error = -8.1 V.
17-03-17 22:50:04.938 -07 000000627 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.5 um, Read 10 ADC samples: Avg = 36765 (-175.6 uncal um), Error = 0.9 uncal um, Median = 36765 (-175.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 36759 (-175.6 uncal um), Max = 36769 (-175.6 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 22:50:04.938 -07 000000627 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36765, posNoise = 4, negNoise = 6
17-03-17 22:50:04.938 -07 000000627 INF: Z Motor: After move to -0.176498, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:50:04.938 -07 000000627 INF: Z Motor: Settle wait time = 1457 ms, measure time = 104 ms (allowed 150 ms), total time = 1561 ms
17-03-17 22:50:04.938 -07 000000627 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 22:50:04.988 -07 000000627 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1614 ms
17-03-17 22:50:04.988 -07 000000627 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:50:04.988 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:50:04.988 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:50:04.988 -07 000000448 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:50:04.988 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:50:04.988 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:50:04.988 -07 000000478 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:50:04.988 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 22:50:04.988 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:50:04.998 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:50:04.998 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:50:04.998 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 22:50:04.998 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 22:50:05.008 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:50:05.058 -07 000000593 INF: FPGA: Recv @CAMSNAP turning led on 43
17-03-17 22:50:05.248 -07 000000382 INF: FPGA: Recv @CAMSNAP img rdy 243
17-03-17 22:50:05.248 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 243
17-03-17 22:50:05.258 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:50:05.258 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1512312592, 0x0, 559484976) start.
17-03-17 22:50:05.288 -07 000000593 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:50:05.288 -07 000000462 INF: FPGA: Recv CAMSNAP
17-03-17 22:50:05.288 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 284 ms overall
17-03-17 22:50:05.368 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1512312592, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 22:50:05.368 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:50:05.368 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 22:50:05.368 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 22:50:05.388 -07 000000623 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:50:05.388 -07 000000502 INF: Autofocus start
17-03-17 22:50:05.388 -07 000000502 INF: MeasureProfile start
17-03-17 22:50:05.388 -07 000000478 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:50:05.398 -07 000000623 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:50:05.398 -07 000000623 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:50:05.398 -07 000000502 INF: MeasureProfile done
17-03-17 22:50:05.398 -07 000000502 INF: X=32  Z correction [um]=0.09220707
17-03-17 22:50:05.398 -07 000000502 INF: Autofocus finished
17-03-17 22:50:05.598 -07 000000409 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:50:05.598 -07 000000623 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:50:05.608 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.71337890625, Z-position -0.176509511402977. ----------
17-03-17 22:50:05.608 -07 000000610 INF: Cycle	68	Tile	8	Exposure Settings		A	461	G	222	T	222	C	461
17-03-17 22:50:05.608 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37089, sync = True, waitForSettling = True)
17-03-17 22:50:05.608 -07 000000610 INF: Z Motor: Moving to -0.169783 mm, started at -0.176510 mm, distance = 6.73 um
17-03-17 22:50:05.608 -07 000000610 INF: FPGA: Xmit ZDACW 37089\n [Z Motor]
17-03-17 22:50:05.608 -07 000000502 INF: FPGA: Recv ZDACW
17-03-17 22:50:05.618 -07 000000610 INF: FPGA: 'ZDACW 37089' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 22:50:05.618 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:50:05.618 -07 000000478 INF: FPGA: Recv ZDACR 37089
17-03-17 22:50:05.628 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:05.628 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:50:05.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:05.778 -07 000000623 INF: FPGA: Recv ZSGSRD 35722
17-03-17 22:50:05.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:50:05.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:05.788 -07 000000501 INF: FPGA: Recv ZSGSRD 35716
17-03-17 22:50:05.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:05.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:05.798 -07 000000551 INF: FPGA: Recv ZSGSRD 35723
17-03-17 22:50:05.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:05.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:05.808 -07 000000462 INF: FPGA: Recv ZSGSRD 35718
17-03-17 22:50:05.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:05.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:05.818 -07 000000576 INF: FPGA: Recv ZSGSRD 35719
17-03-17 22:50:05.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:05.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:05.828 -07 000000623 INF: FPGA: Recv ZSGSRD 35720
17-03-17 22:50:05.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:05.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:05.838 -07 000000547 INF: FPGA: Recv ZSGSRD 35715
17-03-17 22:50:05.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:05.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:05.848 -07 000000482 INF: FPGA: Recv ZSGSRD 35722
17-03-17 22:50:05.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:05.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:05.858 -07 000000382 INF: FPGA: Recv ZSGSRD 35716
17-03-17 22:50:05.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:05.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:05.868 -07 000000415 INF: FPGA: Recv ZSGSRD 35718
17-03-17 22:50:05.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:05.878 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:50:05.878 -07 000000623 INF: FPGA: Recv ZPIEZORD 31661
17-03-17 22:50:05.888 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:05.888 -07 000000610 INF: Z Motor: Piezo is near 47.6 V (nominally 0 to 100 V), expect near 56.6 V, since DAC is at 5.659 V. Piezo Error = -9.0 V.
17-03-17 22:50:05.888 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.8 um, Read 10 ADC samples: Avg = 35719 (-168.9 uncal um), Error = 0.9 uncal um, Median = 35718 (-168.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35715 (-168.9 uncal um), Max = 35723 (-168.9 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 22:50:05.888 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35719, posNoise = 4, negNoise = 4
17-03-17 22:50:05.888 -07 000000610 INF: Z Motor: After move to -0.169783, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:50:05.888 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-17 22:50:05.888 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:50:05.888 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:50:05.888 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:50:05.888 -07 000000547 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:50:05.888 -07 000000593 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:50:05.888 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:50:05.888 -07 000000486 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:50:05.888 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:50:05.888 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:50:05.888 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:50:05.888 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:50:05.888 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:50:05.898 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:50:05.898 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:50:05.898 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:50:05.898 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:50:05.908 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 22:50:05.908 -07 000000593 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 22:50:05.908 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 22:50:05.908 -07 000000486 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 22:50:05.908 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 461 461 222 222 37265 150\n [Camera]
17-03-17 22:50:06.068 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 68, FrontChillerTemperature: 4.004458,
17-03-17 22:50:06.108 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:50:06.568 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 653
17-03-17 22:50:06.568 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 653
17-03-17 22:50:06.568 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:50:06.568 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:50:06.568 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-17 22:50:06.568 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 653
17-03-17 22:50:06.568 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 653
17-03-17 22:50:06.578 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:50:06.578 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:50:06.578 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) start.
17-03-17 22:50:06.758 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37265 846
17-03-17 22:50:06.908 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP turning grn on 996
17-03-17 22:50:06.958 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) end. Duration was 381 ms.
17-03-17 22:50:06.958 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 384 ms.
17-03-17 22:50:06.958 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 22:50:06.958 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:50:06.958 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-17 22:50:06.958 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:50:06.958 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 22:50:06.958 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 22:50:06.958 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 22:50:06.968 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 22:50:07.008 -07 000000541 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:50:07.008 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 67. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1078, R2=1105, Total=2183. Warn if over 250 bubbles per interval.
17-03-17 22:50:07.138 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1218
17-03-17 22:50:07.138 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1218
17-03-17 22:50:07.138 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:50:07.138 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:50:07.138 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2620985504, 0x0, 391868352) start.
17-03-17 22:50:07.138 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1218
17-03-17 22:50:07.138 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1218
17-03-17 22:50:07.138 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:50:07.278 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:50:07.278 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-17 22:50:07.328 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP 1411
17-03-17 22:50:07.328 -07 000000576 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:50:07.328 -07 000000610 INF: FPGA: 'CAMDBLSNAP 461 461 222 222 37265 150' command took 2 ms to send, 1413 ms to get response, and 1418 ms overall
17-03-17 22:50:07.328 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 22:50:07.328 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.71337890625, Z-Position -0.169789785502695. ------
17-03-17 22:50:07.328 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:50:07.328 -07 000000409 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.17628 mm
17-03-17 22:50:07.328 -07 000000409 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:50:07.338 -07 000000382 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-17 22:50:07.338 -07 000000382 INF: Y Motor: Moving to 66.5526 mm, started at 65.7134 mm, delta = 0.8392 mm
17-03-17 22:50:07.338 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:50:07.338 -07 000000593 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:50:07.338 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 22:50:07.338 -07 000000541 INF: Z Motor: Entering MoveAbsStepped (DAC = 38508, sync = True, waitForSettling = False)
17-03-17 22:50:07.338 -07 000000541 INF: Z Motor: Moving to -0.176278 mm, started at -0.169790 mm, distance = -6.49 um
17-03-17 22:50:07.338 -07 000000501 INF: FPGA: Recv YRDPOS 134581
17-03-17 22:50:07.348 -07 000000618 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:50:07.348 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:50:07.348 -07 000000382 INF: Y Motor: Encoder = 134581 = motor step 105141.4 = 65.7134 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:50:07.348 -07 000000382 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:50:07.348 -07 000000382 INF: Y Motor: Moving 1343 steps-19
17-03-17 22:50:07.358 -07 000000541 INF: FPGA: Xmit ZDACW 38508\n [Z Motor]
17-03-17 22:50:07.358 -07 000000576 INF: FPGA: Recv ZDACW
17-03-17 22:50:07.368 -07 000000382 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:50:07.368 -07 000000541 INF: FPGA: 'ZDACW 38508' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-17 22:50:07.378 -07 000000541 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:50:07.378 -07 000000623 INF: FPGA: Recv ZDACR 38508
17-03-17 22:50:07.388 -07 000000541 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:50:07.388 -07 000000541 INF: Z Motor: MoveAbsStepped took 47 ms (did NOT wait for settling yet))
17-03-17 22:50:07.538 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2620985504, 0x0, 391868352) end. Duration was 405 ms.
17-03-17 22:50:07.538 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 22:50:07.538 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:50:07.548 -07 000000462 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:50:07.548 -07 000000618 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 210 ms overall
17-03-17 22:50:07.548 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 22:50:07.548 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-17 22:50:07.658 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 383 ms.
17-03-17 22:50:07.658 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-17 22:50:07.658 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:50:07.668 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:50:07.668 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 532 ms.
17-03-17 22:50:07.738 -07 000000448 INF: FPGA: Recv YMVTILE
17-03-17 22:50:07.738 -07 000000382 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 22:50:07.778 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:50:07.788 -07 000000547 INF: FPGA: Recv YRDPOS 136271
17-03-17 22:50:07.788 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 22:50:07.788 -07 000000382 INF: Y Motor: Encoder = 136271 = motor step 106461.7 = 66.5386 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:50:07.788 -07 000000382 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-17 22:50:07.788 -07 000000382 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.839 mm, average velocity = 2.114 mm/sec
17-03-17 22:50:08.738 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:50:08.738 -07 000000627 INF: FPGA: Recv YRDPOS 136272
17-03-17 22:50:08.748 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:50:08.748 -07 000000382 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:50:08.768 -07 000000382 INF: Y Motor: After move to 66.552605, error = -0.013542, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:50:08.768 -07 000000382 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 22:50:08.768 -07 000000382 INF: Y Motor: Moved to 66.5391 after 1435 ms (table move)
17-03-17 22:50:08.768 -07 000000409 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176278 mm (DAC = 38508)
17-03-17 22:50:08.768 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:08.778 -07 000000551 INF: FPGA: Recv ZSGSRD 36731
17-03-17 22:50:08.788 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:50:08.788 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:08.788 -07 000000478 INF: FPGA: Recv ZSGSRD 36733
17-03-17 22:50:08.798 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:08.798 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:08.798 -07 000000541 INF: FPGA: Recv ZSGSRD 36737
17-03-17 22:50:08.808 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:08.808 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:08.808 -07 000000462 INF: FPGA: Recv ZSGSRD 36731
17-03-17 22:50:08.818 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:08.818 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:08.818 -07 000000551 INF: FPGA: Recv ZSGSRD 36734
17-03-17 22:50:08.828 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:08.828 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:08.828 -07 000000551 INF: FPGA: Recv ZSGSRD 36730
17-03-17 22:50:08.838 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:08.838 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:08.838 -07 000000541 INF: FPGA: Recv ZSGSRD 36728
17-03-17 22:50:08.848 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:08.848 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:08.848 -07 000000462 INF: FPGA: Recv ZSGSRD 36716
17-03-17 22:50:08.858 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:08.858 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:08.858 -07 000000576 INF: FPGA: Recv ZSGSRD 36724
17-03-17 22:50:08.868 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:08.868 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:08.868 -07 000000547 INF: FPGA: Recv ZSGSRD 36735
17-03-17 22:50:08.878 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:08.878 -07 000000409 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:50:08.878 -07 000000593 INF: FPGA: Recv ZPIEZORD 33016
17-03-17 22:50:08.888 -07 000000409 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:08.888 -07 000000409 INF: Z Motor: Piezo is near 50.5 V (nominally 0 to 100 V), expect near 58.8 V, since DAC is at 5.876 V. Piezo Error = -8.2 V.
17-03-17 22:50:08.888 -07 000000409 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.3 um, Read 10 ADC samples: Avg = 36730 (-175.4 uncal um), Error = 0.9 uncal um, Median = 36731 (-175.4 uncal um), StdDev = 6 (0.0 uncal um), Range = 21 (0.1 uncal um), Min = 36716 (-175.3 uncal um), Max = 36737 (-175.4 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 14 (0.1 uncal um)
17-03-17 22:50:08.888 -07 000000409 INF: Z Motor: ADC noise = 14, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36730, posNoise = 7, negNoise = 14
17-03-17 22:50:08.888 -07 000000409 INF: Z Motor: After move to -0.176278, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:50:08.888 -07 000000409 INF: Z Motor: Settle wait time = 1436 ms, measure time = 112 ms (allowed 150 ms), total time = 1548 ms
17-03-17 22:50:08.888 -07 000000409 INF: Z Motor: Waiting extra 38 ms after reading position to reach expected total of 150 ms
17-03-17 22:50:08.928 -07 000000409 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1591 ms
17-03-17 22:50:08.928 -07 000000409 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:50:08.928 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:50:08.928 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:50:08.928 -07 000000482 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:50:08.928 -07 000000547 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:50:08.928 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:50:08.928 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:50:08.928 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 22:50:08.928 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:50:08.938 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:50:08.938 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:50:08.948 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 22:50:08.948 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 22:50:08.948 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:50:08.998 -07 000000623 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:50:09.198 -07 000000501 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:50:09.198 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:50:09.198 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:50:09.198 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610341080, 0x0, 559484976) start.
17-03-17 22:50:09.238 -07 000000576 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:50:09.238 -07 000000415 INF: FPGA: Recv CAMSNAP
17-03-17 22:50:09.238 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 287 ms overall
17-03-17 22:50:09.308 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610341080, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 22:50:09.308 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:50:09.308 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:50:09.308 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 22:50:09.338 -07 000000547 INF: Autofocus start
17-03-17 22:50:09.338 -07 000000547 INF: MeasureProfile start
17-03-17 22:50:09.338 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:50:09.338 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:50:09.348 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:50:09.348 -07 000000618 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:50:09.358 -07 000000547 INF: MeasureProfile done
17-03-17 22:50:09.358 -07 000000547 INF: X=-16  Z correction [um]=-0.1496812
17-03-17 22:50:09.358 -07 000000547 INF: Autofocus finished
17-03-17 22:50:09.548 -07 000000448 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:50:09.548 -07 000000618 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:50:09.548 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.5390625, Z-position -0.176284663978015. ----------
17-03-17 22:50:09.548 -07 000000610 INF: Cycle	68	Tile	9	Exposure Settings		A	461	G	222	T	222	C	461
17-03-17 22:50:09.558 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36988, sync = True, waitForSettling = True)
17-03-17 22:50:09.558 -07 000000610 INF: Z Motor: Moving to -0.169320 mm, started at -0.176285 mm, distance = 6.96 um
17-03-17 22:50:09.558 -07 000000610 INF: FPGA: Xmit ZDACW 36988\n [Z Motor]
17-03-17 22:50:09.558 -07 000000627 INF: FPGA: Recv ZDACW
17-03-17 22:50:09.568 -07 000000610 INF: FPGA: 'ZDACW 36988' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:09.568 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:50:09.568 -07 000000482 INF: FPGA: Recv ZDACR 36988
17-03-17 22:50:09.578 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:09.578 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:50:09.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:09.728 -07 000000448 INF: FPGA: Recv ZSGSRD 35646
17-03-17 22:50:09.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:09.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:09.738 -07 000000501 INF: FPGA: Recv ZSGSRD 35649
17-03-17 22:50:09.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:09.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:09.748 -07 000000547 INF: FPGA: Recv ZSGSRD 35653
17-03-17 22:50:09.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:09.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:09.758 -07 000000415 INF: FPGA: Recv ZSGSRD 35643
17-03-17 22:50:09.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:09.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:09.768 -07 000000623 INF: FPGA: Recv ZSGSRD 35644
17-03-17 22:50:09.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:09.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:09.778 -07 000000593 INF: FPGA: Recv ZSGSRD 35648
17-03-17 22:50:09.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:09.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:09.788 -07 000000541 INF: FPGA: Recv ZSGSRD 35646
17-03-17 22:50:09.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:09.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:09.798 -07 000000547 INF: FPGA: Recv ZSGSRD 35650
17-03-17 22:50:09.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:09.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:09.808 -07 000000618 INF: FPGA: Recv ZSGSRD 35643
17-03-17 22:50:09.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:09.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:09.818 -07 000000623 INF: FPGA: Recv ZSGSRD 35645
17-03-17 22:50:09.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:09.828 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:50:09.828 -07 000000448 INF: FPGA: Recv ZPIEZORD 31579
17-03-17 22:50:09.838 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:09.838 -07 000000610 INF: Z Motor: Piezo is near 47.5 V (nominally 0 to 100 V), expect near 56.4 V, since DAC is at 5.644 V. Piezo Error = -9.0 V.
17-03-17 22:50:09.838 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.3 um, Read 10 ADC samples: Avg = 35647 (-168.5 uncal um), Error = 0.9 uncal um, Median = 35646 (-168.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35643 (-168.4 uncal um), Max = 35653 (-168.5 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 22:50:09.838 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35647, posNoise = 6, negNoise = 4
17-03-17 22:50:09.838 -07 000000610 INF: Z Motor: After move to -0.169320, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:50:09.838 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 22:50:09.838 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:50:09.838 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:50:09.838 -07 000000547 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:50:09.838 -07 000000551 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:50:09.838 -07 000000482 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:50:09.838 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:50:09.838 -07 000000409 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:50:09.838 -07 000000409 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:50:09.838 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 22:50:09.838 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:50:09.838 -07 000000409 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:50:09.838 -07 000000409 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:50:09.848 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:50:09.848 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:50:09.848 -07 000000409 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:50:09.848 -07 000000409 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:50:09.848 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 22:50:09.848 -07 000000482 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 22:50:09.858 -07 000000409 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 22:50:09.858 -07 000000409 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 22:50:09.858 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 461 461 222 222 37164 150\n [Camera]
17-03-17 22:50:10.058 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:50:10.518 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 653
17-03-17 22:50:10.518 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 653
17-03-17 22:50:10.518 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:50:10.518 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 653
17-03-17 22:50:10.518 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 653
17-03-17 22:50:10.518 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:50:10.518 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:50:10.518 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 22:50:10.528 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:50:10.528 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 22:50:10.708 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37164 846
17-03-17 22:50:10.858 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP turning grn on 999
17-03-17 22:50:10.898 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 22:50:10.898 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 22:50:10.898 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:50:10.898 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 373 ms.
17-03-17 22:50:10.898 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-17 22:50:10.898 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:50:10.908 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:50:10.908 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 22:50:10.908 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:50:10.908 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 22:50:11.078 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1218
17-03-17 22:50:11.078 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1218
17-03-17 22:50:11.078 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:50:11.088 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1218
17-03-17 22:50:11.088 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1218
17-03-17 22:50:11.088 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:50:11.198 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:50:11.198 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-17 22:50:11.198 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:50:11.198 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-17 22:50:11.268 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP 1411
17-03-17 22:50:11.278 -07 000000486 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:50:11.278 -07 000000610 INF: FPGA: 'CAMDBLSNAP 461 461 222 222 37164 150' command took 2 ms to send, 1410 ms to get response, and 1418 ms overall
17-03-17 22:50:11.278 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 22:50:11.278 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.5390625, Z-Position -0.169327242228488. ------
17-03-17 22:50:11.278 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:50:11.278 -07 000000502 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.17608 mm
17-03-17 22:50:11.278 -07 000000502 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:50:11.278 -07 000000541 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-17 22:50:11.278 -07 000000541 INF: Y Motor: Moving to 67.3826 mm, started at 66.5391 mm, delta = 0.8435 mm
17-03-17 22:50:11.278 -07 000000627 INF: Z Motor: Entering MoveAbsStepped (DAC = 38465, sync = True, waitForSettling = False)
17-03-17 22:50:11.278 -07 000000627 INF: Z Motor: Moving to -0.176081 mm, started at -0.169327 mm, distance = -6.75 um
17-03-17 22:50:11.288 -07 000000409 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:50:11.288 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:50:11.288 -07 000000627 INF: FPGA: Xmit ZDACW 38465\n [Z Motor]
17-03-17 22:50:11.288 -07 000000382 INF: FPGA: Recv ZDACW
17-03-17 22:50:11.298 -07 000000627 INF: FPGA: 'ZDACW 38465' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:50:11.298 -07 000000462 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:50:11.308 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:50:11.308 -07 000000576 INF: FPGA: Recv YRDPOS 136272
17-03-17 22:50:11.318 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-17 22:50:11.318 -07 000000541 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:50:11.318 -07 000000541 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:50:11.318 -07 000000627 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:50:11.318 -07 000000541 INF: Y Motor: Moving 1350 steps-29
17-03-17 22:50:11.318 -07 000000482 INF: FPGA: Recv ZDACR 38465
17-03-17 22:50:11.328 -07 000000627 INF: FPGA: 'ZDACR' command took 3 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:50:11.328 -07 000000627 INF: Z Motor: MoveAbsStepped took 40 ms (did NOT wait for settling yet))
17-03-17 22:50:11.328 -07 000000541 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:50:11.498 -07 000000551 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:50:11.498 -07 000000462 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 212 ms overall
17-03-17 22:50:11.518 -07 000000482 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 68, FrontChillerTemperature: 4.018051,
17-03-17 22:50:11.598 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 391 ms.
17-03-17 22:50:11.598 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 22:50:11.598 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:50:11.598 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 393 ms.
17-03-17 22:50:11.598 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 22:50:11.598 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:50:11.598 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:50:11.598 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:50:11.598 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 517 ms.
17-03-17 22:50:11.608 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 520 ms.
17-03-17 22:50:11.698 -07 000000551 INF: FPGA: Recv YMVTILE
17-03-17 22:50:11.698 -07 000000541 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 384 ms overall
17-03-17 22:50:11.738 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:50:11.748 -07 000000478 INF: FPGA: Recv YRDPOS 137977
17-03-17 22:50:11.748 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 22:50:11.748 -07 000000541 INF: Y Motor: Encoder = 137977 = motor step 107794.5 = 67.3716 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:50:11.748 -07 000000541 INF: Y Motor: Position error before settling (table move) = -23 encoder counts (-0.011 mm)
17-03-17 22:50:11.748 -07 000000541 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 385 ms, distance = 0.844 mm, average velocity = 2.191 mm/sec
17-03-17 22:50:12.008 -07 000000547 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:50:12.008 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 67. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1078, R2=1105, Total=2183. Warn if over 250 bubbles per interval.
17-03-17 22:50:12.698 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:50:12.698 -07 000000462 INF: FPGA: Recv YRDPOS 137977
17-03-17 22:50:12.708 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:50:12.708 -07 000000541 INF: Y Motor: Encoder = 137977 = motor step 107794.5 = 67.3716 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:50:12.728 -07 000000541 INF: Y Motor: After move to 67.382607, error = -0.011024, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:50:12.728 -07 000000541 INF: Y Motor: Position error after settling (table move) = -23 encoder counts (-0.011 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:50:12.728 -07 000000541 INF: Y Motor: Moved to 67.3716 after 1446 ms (table move)
17-03-17 22:50:12.728 -07 000000502 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176081 mm (DAC = 38465)
17-03-17 22:50:12.728 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:12.738 -07 000000593 INF: FPGA: Recv ZSGSRD 36706
17-03-17 22:50:12.738 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:50:12.738 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:12.738 -07 000000482 INF: FPGA: Recv ZSGSRD 36696
17-03-17 22:50:12.748 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:50:12.748 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:12.748 -07 000000623 INF: FPGA: Recv ZSGSRD 36703
17-03-17 22:50:12.758 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:12.758 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:12.758 -07 000000547 INF: FPGA: Recv ZSGSRD 36702
17-03-17 22:50:12.768 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:12.768 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:12.768 -07 000000382 INF: FPGA: Recv ZSGSRD 36701
17-03-17 22:50:12.778 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:12.778 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:12.778 -07 000000482 INF: FPGA: Recv ZSGSRD 36696
17-03-17 22:50:12.788 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:50:12.788 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:12.788 -07 000000478 INF: FPGA: Recv ZSGSRD 36701
17-03-17 22:50:12.798 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:12.798 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:12.798 -07 000000541 INF: FPGA: Recv ZSGSRD 36700
17-03-17 22:50:12.808 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:12.808 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:12.808 -07 000000486 INF: FPGA: Recv ZSGSRD 36692
17-03-17 22:50:12.818 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:12.818 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:12.818 -07 000000623 INF: FPGA: Recv ZSGSRD 36704
17-03-17 22:50:12.828 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:12.828 -07 000000502 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:50:12.828 -07 000000478 INF: FPGA: Recv ZPIEZORD 32945
17-03-17 22:50:12.838 -07 000000502 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:12.838 -07 000000502 INF: Z Motor: Piezo is near 50.4 V (nominally 0 to 100 V), expect near 58.7 V, since DAC is at 5.869 V. Piezo Error = -8.3 V.
17-03-17 22:50:12.838 -07 000000502 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.1 um, Read 10 ADC samples: Avg = 36700 (-175.2 uncal um), Error = 0.9 uncal um, Median = 36701 (-175.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36692 (-175.2 uncal um), Max = 36706 (-175.2 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 22:50:12.838 -07 000000502 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36700, posNoise = 6, negNoise = 8
17-03-17 22:50:12.838 -07 000000502 INF: Z Motor: After move to -0.176081, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:50:12.838 -07 000000502 INF: Z Motor: Settle wait time = 1449 ms, measure time = 101 ms (allowed 150 ms), total time = 1550 ms
17-03-17 22:50:12.838 -07 000000502 INF: Z Motor: Waiting extra 49 ms after reading position to reach expected total of 150 ms
17-03-17 22:50:12.888 -07 000000502 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1603 ms
17-03-17 22:50:12.888 -07 000000502 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:50:12.888 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:50:12.888 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:50:12.888 -07 000000482 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:50:12.888 -07 000000448 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:50:12.888 -07 000000486 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:50:12.888 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:50:12.888 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:50:12.888 -07 000000486 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:50:12.898 -07 000000486 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 22:50:12.898 -07 000000486 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:50:12.908 -07 000000486 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 22:50:12.908 -07 000000486 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 22:50:12.908 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:50:12.958 -07 000000486 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:50:13.158 -07 000000541 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:50:13.158 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:50:13.158 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:50:13.158 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2164362856, 0x0, 559484976) start.
17-03-17 22:50:13.198 -07 000000502 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:50:13.198 -07 000000478 INF: FPGA: Recv CAMSNAP
17-03-17 22:50:13.198 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 284 ms overall
17-03-17 22:50:13.268 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2164362856, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 22:50:13.268 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:50:13.268 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:50:13.278 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 116 ms.
17-03-17 22:50:13.298 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:50:13.298 -07 000000409 INF: Autofocus start
17-03-17 22:50:13.298 -07 000000409 INF: MeasureProfile start
17-03-17 22:50:13.298 -07 000000478 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:50:13.308 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 22:50:13.308 -07 000000576 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:50:13.318 -07 000000409 INF: MeasureProfile done
17-03-17 22:50:13.318 -07 000000409 INF: X=32  Z correction [um]=0.09220707
17-03-17 22:50:13.318 -07 000000409 INF: Autofocus finished
17-03-17 22:50:13.508 -07 000000502 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:50:13.508 -07 000000576 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:50:13.508 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.37158203125, Z-position -0.176091937613762. ----------
17-03-17 22:50:13.508 -07 000000610 INF: Cycle	68	Tile	10	Exposure Settings		A	461	G	222	T	222	C	461
17-03-17 22:50:13.518 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36998, sync = True, waitForSettling = True)
17-03-17 22:50:13.518 -07 000000610 INF: Z Motor: Moving to -0.169366 mm, started at -0.176092 mm, distance = 6.73 um
17-03-17 22:50:13.518 -07 000000610 INF: FPGA: Xmit ZDACW 36998\n [Z Motor]
17-03-17 22:50:13.518 -07 000000627 INF: FPGA: Recv ZDACW
17-03-17 22:50:13.528 -07 000000610 INF: FPGA: 'ZDACW 36998' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:50:13.528 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:50:13.528 -07 000000448 INF: FPGA: Recv ZDACR 36998
17-03-17 22:50:13.538 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:13.538 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:50:13.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:13.688 -07 000000551 INF: FPGA: Recv ZSGSRD 35652
17-03-17 22:50:13.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:50:13.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:13.698 -07 000000593 INF: FPGA: Recv ZSGSRD 35660
17-03-17 22:50:13.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:13.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:13.708 -07 000000623 INF: FPGA: Recv ZSGSRD 35651
17-03-17 22:50:13.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:13.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:13.718 -07 000000627 INF: FPGA: Recv ZSGSRD 35655
17-03-17 22:50:13.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:13.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:13.728 -07 000000448 INF: FPGA: Recv ZSGSRD 35655
17-03-17 22:50:13.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:13.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:13.738 -07 000000502 INF: FPGA: Recv ZSGSRD 35652
17-03-17 22:50:13.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:13.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:13.748 -07 000000501 INF: FPGA: Recv ZSGSRD 35650
17-03-17 22:50:13.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:13.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:13.758 -07 000000623 INF: FPGA: Recv ZSGSRD 35653
17-03-17 22:50:13.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:13.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:13.768 -07 000000627 INF: FPGA: Recv ZSGSRD 35660
17-03-17 22:50:13.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:13.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:13.778 -07 000000448 INF: FPGA: Recv ZSGSRD 35653
17-03-17 22:50:13.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:13.788 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:50:13.788 -07 000000502 INF: FPGA: Recv ZPIEZORD 31578
17-03-17 22:50:13.798 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:13.798 -07 000000610 INF: Z Motor: Piezo is near 47.5 V (nominally 0 to 100 V), expect near 56.5 V, since DAC is at 5.646 V. Piezo Error = -9.0 V.
17-03-17 22:50:13.798 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.4 um, Read 10 ADC samples: Avg = 35654 (-168.5 uncal um), Error = 0.9 uncal um, Median = 35653 (-168.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35650 (-168.5 uncal um), Max = 35660 (-168.5 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 22:50:13.798 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35654, posNoise = 6, negNoise = 4
17-03-17 22:50:13.798 -07 000000610 INF: Z Motor: After move to -0.169366, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:50:13.798 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 22:50:13.798 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:50:13.798 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:50:13.798 -07 000000623 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:50:13.798 -07 000000415 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:50:13.798 -07 000000593 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:50:13.808 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:50:13.808 -07 000000448 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:50:13.808 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:50:13.808 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:50:13.808 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:50:13.808 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:50:13.808 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:50:13.808 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 22:50:13.808 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:50:13.808 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:50:13.808 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:50:13.818 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 22:50:13.818 -07 000000593 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 22:50:13.818 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 22:50:13.818 -07 000000448 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 22:50:13.818 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 461 461 222 222 37175 150\n [Camera]
17-03-17 22:50:14.018 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:50:14.478 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 653
17-03-17 22:50:14.478 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 653
17-03-17 22:50:14.478 -07 000000409 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:50:14.488 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 653
17-03-17 22:50:14.488 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 653
17-03-17 22:50:14.488 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:50:14.488 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:50:14.488 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 656674232, 0x0, 418435064) start.
17-03-17 22:50:14.488 -07 000000409 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:50:14.488 -07 000000409 INF: Camera: sBCa_ReadImage(785074288, 2183444240, 0x0, 391868352) start.
17-03-17 22:50:14.668 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37175 846
17-03-17 22:50:14.818 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP turning grn on 996
17-03-17 22:50:14.858 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 656674232, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 22:50:14.858 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-17 22:50:14.858 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:50:14.858 -07 000000409 INF: Camera: sBCa_ReadImage(785074288, 2183444240, 0x0, 391868352) end. Duration was 374 ms.
17-03-17 22:50:14.858 -07 000000409 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 374 ms.
17-03-17 22:50:14.858 -07 000000409 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:50:14.868 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:50:14.868 -07 000000409 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 22:50:14.868 -07 000000409 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 22:50:14.878 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 22:50:15.048 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1218
17-03-17 22:50:15.048 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1218
17-03-17 22:50:15.048 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:50:15.048 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1218
17-03-17 22:50:15.048 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1218
17-03-17 22:50:15.048 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:50:15.048 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 2334002848, 0x0, 391868352) start.
17-03-17 22:50:15.048 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:50:15.048 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:50:15.048 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 2369425112, 0x0, 418435064) start.
17-03-17 22:50:15.238 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP 1411
17-03-17 22:50:15.238 -07 000000462 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:50:15.238 -07 000000610 INF: FPGA: 'CAMDBLSNAP 461 461 222 222 37175 150' command took 2 ms to send, 1414 ms to get response, and 1418 ms overall
17-03-17 22:50:15.238 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 22:50:15.238 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.37158203125, Z-Position -0.16937221171348. ------
17-03-17 22:50:15.238 -07 000000551 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:50:15.238 -07 000000382 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.17576 mm
17-03-17 22:50:15.238 -07 000000382 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:50:15.248 -07 000000482 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:50:15.248 -07 000000551 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 5 ms to get response, and 6 ms overall
17-03-17 22:50:15.248 -07 000000415 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-17 22:50:15.248 -07 000000415 INF: Y Motor: Moving to 68.2126 mm, started at 67.3716 mm, delta = 0.8410 mm
17-03-17 22:50:15.248 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:50:15.248 -07 000000618 INF: Z Motor: Entering MoveAbsStepped (DAC = 38395, sync = True, waitForSettling = False)
17-03-17 22:50:15.248 -07 000000618 INF: Z Motor: Moving to -0.175761 mm, started at -0.169372 mm, distance = -6.39 um
17-03-17 22:50:15.258 -07 000000618 INF: FPGA: Xmit ZDACW 38395\n [Z Motor]
17-03-17 22:50:15.258 -07 000000576 INF: FPGA: Recv YRDPOS 137977
17-03-17 22:50:15.258 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 6 ms overall
17-03-17 22:50:15.258 -07 000000415 INF: Y Motor: Encoder = 137977 = motor step 107794.5 = 67.3716 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:50:15.258 -07 000000415 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:50:15.258 -07 000000415 INF: Y Motor: Moving 1346 steps-23
17-03-17 22:50:15.258 -07 000000547 INF: FPGA: Recv ZDACW
17-03-17 22:50:15.268 -07 000000551 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:50:15.268 -07 000000618 INF: FPGA: 'ZDACW 38395' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 22:50:15.278 -07 000000415 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:50:15.288 -07 000000618 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:50:15.288 -07 000000576 INF: FPGA: Recv ZDACR 38395
17-03-17 22:50:15.298 -07 000000618 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:50:15.298 -07 000000618 INF: Z Motor: MoveAbsStepped took 44 ms (did NOT wait for settling yet))
17-03-17 22:50:15.458 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 2334002848, 0x0, 391868352) end. Duration was 404 ms.
17-03-17 22:50:15.458 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 22:50:15.458 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:50:15.458 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 2369425112, 0x0, 418435064) end. Duration was 404 ms.
17-03-17 22:50:15.458 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-17 22:50:15.458 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:50:15.458 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:50:15.458 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 413 ms.
17-03-17 22:50:15.458 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:50:15.468 -07 000000627 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:50:15.468 -07 000000551 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 216 ms overall
17-03-17 22:50:15.468 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-17 22:50:15.658 -07 000000618 INF: FPGA: Recv YMVTILE
17-03-17 22:50:15.658 -07 000000415 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 398 ms overall
17-03-17 22:50:15.698 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:50:15.698 -07 000000551 INF: FPGA: Recv YRDPOS 139683
17-03-17 22:50:15.708 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:50:15.708 -07 000000415 INF: Y Motor: Encoder = 139683 = motor step 109127.3 = 68.2046 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:50:15.708 -07 000000415 INF: Y Motor: Position error before settling (table move) = -16 encoder counts (-0.008 mm)
17-03-17 22:50:15.708 -07 000000415 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 399 ms, distance = 0.841 mm, average velocity = 2.108 mm/sec
17-03-17 22:50:16.658 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:50:16.658 -07 000000618 INF: FPGA: Recv YRDPOS 139683
17-03-17 22:50:16.668 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:16.668 -07 000000415 INF: Y Motor: Encoder = 139683 = motor step 109127.3 = 68.2046 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:50:16.688 -07 000000415 INF: Y Motor: After move to 68.212608, error = -0.008018, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:50:16.688 -07 000000415 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:50:16.688 -07 000000415 INF: Y Motor: Moved to 68.2046 after 1438 ms (table move)
17-03-17 22:50:16.688 -07 000000382 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175761 mm (DAC = 38395)
17-03-17 22:50:16.688 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:16.698 -07 000000551 INF: FPGA: Recv ZSGSRD 36649
17-03-17 22:50:16.698 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 22:50:16.698 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:16.698 -07 000000482 INF: FPGA: Recv ZSGSRD 36652
17-03-17 22:50:16.708 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:16.708 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:16.708 -07 000000478 INF: FPGA: Recv ZSGSRD 36649
17-03-17 22:50:16.718 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:16.718 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:16.718 -07 000000623 INF: FPGA: Recv ZSGSRD 36649
17-03-17 22:50:16.728 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:16.728 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:16.728 -07 000000448 INF: FPGA: Recv ZSGSRD 36646
17-03-17 22:50:16.738 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:16.738 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:16.738 -07 000000482 INF: FPGA: Recv ZSGSRD 36648
17-03-17 22:50:16.748 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:16.748 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:16.748 -07 000000462 INF: FPGA: Recv ZSGSRD 36648
17-03-17 22:50:16.758 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:16.758 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:16.758 -07 000000593 INF: FPGA: Recv ZSGSRD 36647
17-03-17 22:50:16.768 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:16.768 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:16.768 -07 000000415 INF: FPGA: Recv ZSGSRD 36650
17-03-17 22:50:16.778 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:16.778 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:16.778 -07 000000478 INF: FPGA: Recv ZSGSRD 36652
17-03-17 22:50:16.788 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:16.788 -07 000000382 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:50:16.788 -07 000000486 INF: FPGA: Recv ZPIEZORD 32897
17-03-17 22:50:16.798 -07 000000382 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:16.798 -07 000000382 INF: Z Motor: Piezo is near 50.3 V (nominally 0 to 100 V), expect near 58.6 V, since DAC is at 5.859 V. Piezo Error = -8.3 V.
17-03-17 22:50:16.798 -07 000000382 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.8 um, Read 10 ADC samples: Avg = 36649 (-174.9 uncal um), Error = 0.9 uncal um, Median = 36649 (-174.9 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 36646 (-174.9 uncal um), Max = 36652 (-174.9 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 22:50:16.798 -07 000000382 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36649, posNoise = 3, negNoise = 3
17-03-17 22:50:16.798 -07 000000382 INF: Z Motor: After move to -0.175761, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:50:16.798 -07 000000382 INF: Z Motor: Settle wait time = 1441 ms, measure time = 103 ms (allowed 150 ms), total time = 1544 ms
17-03-17 22:50:16.798 -07 000000382 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 22:50:16.848 -07 000000382 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1600 ms
17-03-17 22:50:16.848 -07 000000382 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:50:16.848 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:50:16.848 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:50:16.848 -07 000000482 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:50:16.848 -07 000000478 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:50:16.848 -07 000000415 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:50:16.848 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:50:16.848 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:50:16.848 -07 000000415 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:50:16.858 -07 000000415 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:50:16.858 -07 000000415 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:50:16.868 -07 000000415 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-17 22:50:16.868 -07 000000415 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-17 22:50:16.878 -07 000000478 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 68, FrontChillerTemperature: 4.016692,
17-03-17 22:50:16.888 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:50:16.928 -07 000000415 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:50:17.008 -07 000000547 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:50:17.008 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 67. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1078, R2=1105, Total=2183. Warn if over 250 bubbles per interval.
17-03-17 22:50:17.128 -07 000000623 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:50:17.128 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:50:17.128 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:50:17.238 -07 000000478 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:50:17.238 -07 000000478 INF: FPGA: Recv CAMSNAP
17-03-17 22:50:17.238 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 349 ms to get response, and 374 ms overall
17-03-17 22:50:17.238 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2235741568, 0x0, 559484976) start.
17-03-17 22:50:17.358 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2235741568, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 22:50:17.358 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:50:17.358 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:50:17.358 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 231 ms.
17-03-17 22:50:17.438 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:50:17.438 -07 000000462 INF: Autofocus start
17-03-17 22:50:17.438 -07 000000462 INF: MeasureProfile start
17-03-17 22:50:17.438 -07 000000409 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:50:17.448 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 22:50:17.448 -07 000000618 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:50:17.448 -07 000000462 INF: MeasureProfile done
17-03-17 22:50:17.448 -07 000000462 INF: X=16  Z correction [um]=0.01042744
17-03-17 22:50:17.448 -07 000000462 INF: Autofocus finished
17-03-17 22:50:17.648 -07 000000448 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:50:17.648 -07 000000618 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:50:17.648 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.20458984375, Z-position -0.175764302794532. ----------
17-03-17 22:50:17.648 -07 000000610 INF: Cycle	68	Tile	11	Exposure Settings		A	461	G	222	T	222	C	461
17-03-17 22:50:17.658 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36909, sync = True, waitForSettling = True)
17-03-17 22:50:17.658 -07 000000610 INF: Z Motor: Moving to -0.168959 mm, started at -0.175764 mm, distance = 6.81 um
17-03-17 22:50:17.658 -07 000000610 INF: FPGA: Xmit ZDACW 36909\n [Z Motor]
17-03-17 22:50:17.658 -07 000000486 INF: FPGA: Recv ZDACW
17-03-17 22:50:17.668 -07 000000610 INF: FPGA: 'ZDACW 36909' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:50:17.668 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:50:17.668 -07 000000618 INF: FPGA: Recv ZDACR 36909
17-03-17 22:50:17.678 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:17.678 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:50:17.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:17.828 -07 000000541 INF: FPGA: Recv ZSGSRD 35592
17-03-17 22:50:17.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:50:17.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:17.838 -07 000000482 INF: FPGA: Recv ZSGSRD 35591
17-03-17 22:50:17.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:17.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:17.848 -07 000000623 INF: FPGA: Recv ZSGSRD 35590
17-03-17 22:50:17.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:17.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:17.858 -07 000000502 INF: FPGA: Recv ZSGSRD 35590
17-03-17 22:50:17.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:17.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:17.868 -07 000000551 INF: FPGA: Recv ZSGSRD 35591
17-03-17 22:50:17.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:17.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:17.878 -07 000000541 INF: FPGA: Recv ZSGSRD 35592
17-03-17 22:50:17.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:17.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:17.888 -07 000000448 INF: FPGA: Recv ZSGSRD 35595
17-03-17 22:50:17.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:17.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:17.898 -07 000000618 INF: FPGA: Recv ZSGSRD 35590
17-03-17 22:50:17.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:17.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:17.908 -07 000000486 INF: FPGA: Recv ZSGSRD 35591
17-03-17 22:50:17.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:17.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:17.918 -07 000000502 INF: FPGA: Recv ZSGSRD 35593
17-03-17 22:50:17.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:17.928 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:50:17.928 -07 000000547 INF: FPGA: Recv ZPIEZORD 31485
17-03-17 22:50:17.938 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:17.938 -07 000000610 INF: Z Motor: Piezo is near 47.3 V (nominally 0 to 100 V), expect near 56.3 V, since DAC is at 5.632 V. Piezo Error = -9.1 V.
17-03-17 22:50:17.938 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.0 um, Read 10 ADC samples: Avg = 35592 (-168.1 uncal um), Error = 0.9 uncal um, Median = 35591 (-168.1 uncal um), StdDev = 2 (0.0 uncal um), Range = 5 (0.0 uncal um), Min = 35590 (-168.1 uncal um), Max = 35595 (-168.1 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 2 (0.0 uncal um)
17-03-17 22:50:17.938 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35592, posNoise = 3, negNoise = 2
17-03-17 22:50:17.938 -07 000000610 INF: Z Motor: After move to -0.168959, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:50:17.938 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 22:50:17.938 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:50:17.938 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:50:17.938 -07 000000409 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:50:17.938 -07 000000551 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:50:17.938 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:50:17.938 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:50:17.938 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:50:17.938 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:50:17.938 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:50:17.938 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:50:17.938 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:50:17.938 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:50:17.948 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 22:50:17.948 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 22:50:17.948 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:50:17.948 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:50:17.948 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 22:50:17.948 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 22:50:17.958 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 22:50:17.958 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 22:50:17.958 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 461 461 222 222 37086 150\n [Camera]
17-03-17 22:50:18.158 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:50:18.618 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 653
17-03-17 22:50:18.618 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 653
17-03-17 22:50:18.618 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:50:18.618 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 653
17-03-17 22:50:18.618 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 653
17-03-17 22:50:18.628 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:50:18.628 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:50:18.628 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 583729424, 0x0, 391868352) start.
17-03-17 22:50:18.628 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:50:18.628 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 22:50:18.808 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37086 846
17-03-17 22:50:18.968 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP turning grn on 999
17-03-17 22:50:19.008 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 583729424, 0x0, 391868352) end. Duration was 378 ms.
17-03-17 22:50:19.008 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 22:50:19.008 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-17 22:50:19.008 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:50:19.008 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 22:50:19.008 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:50:19.008 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 22:50:19.008 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 22:50:19.008 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 22:50:19.018 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 22:50:19.188 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1218
17-03-17 22:50:19.188 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1218
17-03-17 22:50:19.188 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:50:19.188 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1218
17-03-17 22:50:19.188 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1218
17-03-17 22:50:19.188 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:50:19.298 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:50:19.298 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 22:50:19.298 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:50:19.298 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-17 22:50:19.378 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP 1410
17-03-17 22:50:19.378 -07 000000448 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:50:19.378 -07 000000610 INF: FPGA: 'CAMDBLSNAP 461 461 222 222 37086 150' command took 2 ms to send, 1413 ms to get response, and 1417 ms overall
17-03-17 22:50:19.378 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 22:50:19.378 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.20458984375, Z-Position -0.168973910560691. ------
17-03-17 22:50:19.378 -07 000000551 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:50:19.378 -07 000000593 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.17568 mm
17-03-17 22:50:19.378 -07 000000593 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:50:19.388 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:50:19.388 -07 000000551 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 22:50:19.388 -07 000000623 INF: Z Motor: Entering MoveAbsStepped (DAC = 38378, sync = True, waitForSettling = False)
17-03-17 22:50:19.388 -07 000000623 INF: Z Motor: Moving to -0.175683 mm, started at -0.168974 mm, distance = -6.71 um
17-03-17 22:50:19.388 -07 000000551 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:50:19.388 -07 000000382 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-17 22:50:19.388 -07 000000382 INF: Y Motor: Moving to 69.0426 mm, started at 68.2046 mm, delta = 0.8380 mm
17-03-17 22:50:19.398 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:50:19.398 -07 000000482 INF: FPGA: Recv YRDPOS 139683
17-03-17 22:50:19.408 -07 000000623 INF: FPGA: Xmit ZDACW 38378\n [Z Motor]
17-03-17 22:50:19.408 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 22:50:19.408 -07 000000382 INF: Y Motor: Encoder = 139683 = motor step 109127.3 = 68.2046 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:50:19.408 -07 000000382 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:50:19.408 -07 000000382 INF: Y Motor: Moving 1341 steps-16
17-03-17 22:50:19.408 -07 000000618 INF: FPGA: Recv ZDACW
17-03-17 22:50:19.418 -07 000000623 INF: FPGA: 'ZDACW 38378' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-17 22:50:19.418 -07 000000623 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:50:19.418 -07 000000478 INF: FPGA: Recv ZDACR 38378
17-03-17 22:50:19.428 -07 000000382 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:50:19.428 -07 000000623 INF: FPGA: 'ZDACR' command took 2 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:19.428 -07 000000623 INF: Z Motor: MoveAbsStepped took 38 ms (did NOT wait for settling yet))
17-03-17 22:50:19.588 -07 000000462 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:50:19.588 -07 000000551 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 202 ms overall
17-03-17 22:50:19.698 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 400 ms.
17-03-17 22:50:19.698 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 22:50:19.698 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:50:19.698 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 399 ms.
17-03-17 22:50:19.698 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 22:50:19.698 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:50:19.708 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:50:19.708 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:50:19.708 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 519 ms.
17-03-17 22:50:19.708 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 522 ms.
17-03-17 22:50:19.798 -07 000000618 INF: FPGA: Recv YMVTILE
17-03-17 22:50:19.798 -07 000000382 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 22:50:19.838 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:50:19.848 -07 000000415 INF: FPGA: Recv YRDPOS 141366
17-03-17 22:50:19.848 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 22:50:19.848 -07 000000382 INF: Y Motor: Encoder = 141366 = motor step 110442.2 = 69.0264 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:50:19.848 -07 000000382 INF: Y Motor: Position error before settling (table move) = -33 encoder counts (-0.016 mm)
17-03-17 22:50:19.848 -07 000000382 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.838 mm, average velocity = 2.106 mm/sec
17-03-17 22:50:20.798 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:50:20.798 -07 000000502 INF: FPGA: Recv YRDPOS 141367
17-03-17 22:50:20.808 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:50:20.808 -07 000000382 INF: Y Motor: Encoder = 141367 = motor step 110443.0 = 69.0269 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:50:20.828 -07 000000382 INF: Y Motor: After move to 69.042610, error = -0.015755, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:50:20.828 -07 000000382 INF: Y Motor: Position error after settling (table move) = -32 encoder counts (-0.016 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 22:50:20.828 -07 000000382 INF: Y Motor: Moved to 69.0269 after 1442 ms (table move)
17-03-17 22:50:20.828 -07 000000593 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175683 mm (DAC = 38378)
17-03-17 22:50:20.828 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:20.838 -07 000000547 INF: FPGA: Recv ZSGSRD 36646
17-03-17 22:50:20.838 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 22:50:20.838 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:20.838 -07 000000415 INF: FPGA: Recv ZSGSRD 36642
17-03-17 22:50:20.848 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:50:20.848 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:20.848 -07 000000501 INF: FPGA: Recv ZSGSRD 36638
17-03-17 22:50:20.858 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:20.858 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:20.858 -07 000000623 INF: FPGA: Recv ZSGSRD 36641
17-03-17 22:50:20.868 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:20.868 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:20.868 -07 000000547 INF: FPGA: Recv ZSGSRD 36646
17-03-17 22:50:20.878 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:20.878 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:20.878 -07 000000627 INF: FPGA: Recv ZSGSRD 36637
17-03-17 22:50:20.888 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:50:20.888 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:20.888 -07 000000382 INF: FPGA: Recv ZSGSRD 36635
17-03-17 22:50:20.898 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:20.898 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:20.898 -07 000000551 INF: FPGA: Recv ZSGSRD 36634
17-03-17 22:50:20.908 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:20.908 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:20.908 -07 000000415 INF: FPGA: Recv ZSGSRD 36637
17-03-17 22:50:20.918 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:20.918 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:20.918 -07 000000482 INF: FPGA: Recv ZSGSRD 36642
17-03-17 22:50:20.928 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:20.928 -07 000000593 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:50:20.928 -07 000000462 INF: FPGA: Recv ZPIEZORD 32916
17-03-17 22:50:20.938 -07 000000593 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:20.938 -07 000000593 INF: Z Motor: Piezo is near 50.3 V (nominally 0 to 100 V), expect near 58.6 V, since DAC is at 5.856 V. Piezo Error = -8.2 V.
17-03-17 22:50:20.938 -07 000000593 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.7 um, Read 10 ADC samples: Avg = 36640 (-174.8 uncal um), Error = 0.9 uncal um, Median = 36640 (-174.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36634 (-174.8 uncal um), Max = 36646 (-174.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 22:50:20.938 -07 000000593 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36640, posNoise = 6, negNoise = 6
17-03-17 22:50:20.938 -07 000000593 INF: Z Motor: After move to -0.175683, error = -0.000023, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:50:20.938 -07 000000593 INF: Z Motor: Settle wait time = 1446 ms, measure time = 102 ms (allowed 150 ms), total time = 1548 ms
17-03-17 22:50:20.938 -07 000000593 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 22:50:20.988 -07 000000593 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1601 ms
17-03-17 22:50:20.988 -07 000000593 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:50:20.988 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:50:20.988 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:50:20.988 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:50:20.988 -07 000000482 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:50:20.988 -07 000000415 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:50:20.988 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:50:20.988 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 22:50:20.988 -07 000000415 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:50:20.998 -07 000000415 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:50:20.998 -07 000000415 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:50:21.008 -07 000000415 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 22:50:21.008 -07 000000415 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-17 22:50:21.008 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:50:21.058 -07 000000448 INF: FPGA: Recv @CAMSNAP turning led on 42
17-03-17 22:50:21.258 -07 000000501 INF: FPGA: Recv @CAMSNAP img rdy 242
17-03-17 22:50:21.258 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 242
17-03-17 22:50:21.258 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:50:21.258 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 596199184, 0x0, 559484976) start.
17-03-17 22:50:21.298 -07 000000448 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:50:21.298 -07 000000541 INF: FPGA: Recv CAMSNAP
17-03-17 22:50:21.298 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 285 ms overall
17-03-17 22:50:21.378 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 596199184, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 22:50:21.378 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:50:21.378 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:50:21.378 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 22:50:21.398 -07 000000478 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:50:21.398 -07 000000551 INF: Autofocus start
17-03-17 22:50:21.398 -07 000000551 INF: MeasureProfile start
17-03-17 22:50:21.398 -07 000000547 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:50:21.408 -07 000000478 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:50:21.408 -07 000000478 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:50:21.408 -07 000000551 INF: MeasureProfile done
17-03-17 22:50:21.408 -07 000000551 INF: X=-32  Z correction [um]=-0.2344
17-03-17 22:50:21.408 -07 000000551 INF: Autofocus finished
17-03-17 22:50:21.608 -07 000000448 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:50:21.608 -07 000000478 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:50:21.608 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02685546875, Z-position -0.175706484885256. ----------
17-03-17 22:50:21.608 -07 000000610 INF: Cycle	68	Tile	12	Exposure Settings		A	461	G	222	T	222	C	461
17-03-17 22:50:21.618 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36840, sync = True, waitForSettling = True)
17-03-17 22:50:21.618 -07 000000610 INF: Z Motor: Moving to -0.168643 mm, started at -0.175706 mm, distance = 7.06 um
17-03-17 22:50:21.618 -07 000000610 INF: FPGA: Xmit ZDACW 36840\n [Z Motor]
17-03-17 22:50:21.618 -07 000000623 INF: FPGA: Recv ZDACW
17-03-17 22:50:21.628 -07 000000610 INF: FPGA: 'ZDACW 36840' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:50:21.628 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:50:21.628 -07 000000501 INF: FPGA: Recv ZDACR 36840
17-03-17 22:50:21.638 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:21.638 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:50:21.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:21.788 -07 000000618 INF: FPGA: Recv ZSGSRD 35544
17-03-17 22:50:21.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:21.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:21.798 -07 000000409 INF: FPGA: Recv ZSGSRD 35545
17-03-17 22:50:21.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:21.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:21.808 -07 000000547 INF: FPGA: Recv ZSGSRD 35547
17-03-17 22:50:21.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:21.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:21.818 -07 000000593 INF: FPGA: Recv ZSGSRD 35538
17-03-17 22:50:21.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:21.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:21.828 -07 000000501 INF: FPGA: Recv ZSGSRD 35542
17-03-17 22:50:21.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:21.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:21.838 -07 000000618 INF: FPGA: Recv ZSGSRD 35546
17-03-17 22:50:21.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:21.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:21.848 -07 000000478 INF: FPGA: Recv ZSGSRD 35543
17-03-17 22:50:21.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:21.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:21.858 -07 000000541 INF: FPGA: Recv ZSGSRD 35542
17-03-17 22:50:21.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:21.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:21.868 -07 000000593 INF: FPGA: Recv ZSGSRD 35540
17-03-17 22:50:21.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:21.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:21.878 -07 000000482 INF: FPGA: Recv ZSGSRD 35547
17-03-17 22:50:21.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:21.888 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:50:21.888 -07 000000415 INF: FPGA: Recv ZPIEZORD 31475
17-03-17 22:50:21.898 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:21.898 -07 000000610 INF: Z Motor: Piezo is near 47.2 V (nominally 0 to 100 V), expect near 56.2 V, since DAC is at 5.621 V. Piezo Error = -9.0 V.
17-03-17 22:50:21.898 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.6 um, Read 10 ADC samples: Avg = 35543 (-167.8 uncal um), Error = 0.9 uncal um, Median = 35544 (-167.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35538 (-167.8 uncal um), Max = 35547 (-167.8 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 22:50:21.898 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35543, posNoise = 4, negNoise = 5
17-03-17 22:50:21.898 -07 000000610 INF: Z Motor: After move to -0.168643, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:50:21.898 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 22:50:21.898 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:50:21.898 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:50:21.898 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:50:21.898 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:50:21.898 -07 000000482 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:50:21.898 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:50:21.898 -07 000000547 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:50:21.898 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:50:21.898 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:50:21.898 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:50:21.898 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-17 22:50:21.898 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:50:21.908 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:50:21.908 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:50:21.908 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:50:21.908 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:50:21.908 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 22:50:21.908 -07 000000482 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 22:50:21.918 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 22:50:21.918 -07 000000547 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms.
17-03-17 22:50:21.918 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 461 461 222 222 37016 150\n [Camera]
17-03-17 22:50:22.008 -07 000000482 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:50:22.008 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 67. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1078, R2=1105, Total=2183. Warn if over 250 bubbles per interval.
17-03-17 22:50:22.118 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:50:22.258 -07 000000551 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 68, FrontChillerTemperature: 4.004458,
17-03-17 22:50:22.578 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 653
17-03-17 22:50:22.578 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 653
17-03-17 22:50:22.578 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:50:22.578 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 653
17-03-17 22:50:22.578 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 653
17-03-17 22:50:22.588 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:50:22.588 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:50:22.588 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 656674232, 0x0, 418435064) start.
17-03-17 22:50:22.588 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:50:22.588 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 22:50:22.768 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37016 846
17-03-17 22:50:22.918 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning grn on 996
17-03-17 22:50:22.958 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 22:50:22.958 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 22:50:22.958 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:50:22.958 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 656674232, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 22:50:22.958 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-17 22:50:22.958 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:50:22.968 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 22:50:22.968 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 22:50:22.968 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 22:50:22.978 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 22:50:23.148 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1218
17-03-17 22:50:23.148 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1218
17-03-17 22:50:23.148 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:50:23.148 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1218
17-03-17 22:50:23.148 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:50:23.148 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 2334002848, 0x0, 391868352) start.
17-03-17 22:50:23.148 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1218
17-03-17 22:50:23.148 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:50:23.148 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:50:23.148 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 2369425112, 0x0, 418435064) start.
17-03-17 22:50:23.338 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP 1411
17-03-17 22:50:23.338 -07 000000502 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:50:23.338 -07 000000610 INF: FPGA: 'CAMDBLSNAP 461 461 222 222 37016 150' command took 2 ms to send, 1413 ms to get response, and 1418 ms overall
17-03-17 22:50:23.338 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 22:50:23.338 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.02685546875, Z-Position -0.168659124165745. ------
17-03-17 22:50:23.338 -07 000000551 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:50:23.338 -07 000000593 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.17493 mm
17-03-17 22:50:23.338 -07 000000593 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:50:23.348 -07 000000541 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:50:23.348 -07 000000551 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:50:23.348 -07 000000551 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:50:23.348 -07 000000576 INF: Z Motor: Entering MoveAbsStepped (DAC = 38213, sync = True, waitForSettling = False)
17-03-17 22:50:23.348 -07 000000576 INF: Z Motor: Moving to -0.174928 mm, started at -0.168659 mm, distance = -6.27 um
17-03-17 22:50:23.348 -07 000000382 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-17 22:50:23.348 -07 000000382 INF: Y Motor: Moving to 69.8726 mm, started at 69.0269 mm, delta = 0.8458 mm
17-03-17 22:50:23.358 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:50:23.358 -07 000000502 INF: FPGA: Recv YRDPOS 141367
17-03-17 22:50:23.368 -07 000000576 INF: FPGA: Xmit ZDACW 38213\n [Z Motor]
17-03-17 22:50:23.368 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 22:50:23.368 -07 000000382 INF: Y Motor: Encoder = 141367 = motor step 110443.0 = 69.0269 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:50:23.368 -07 000000382 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:50:23.368 -07 000000382 INF: Y Motor: Moving 1353 steps-33
17-03-17 22:50:23.368 -07 000000409 INF: FPGA: Recv ZDACW
17-03-17 22:50:23.378 -07 000000576 INF: FPGA: 'ZDACW 38213' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 22:50:23.378 -07 000000382 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:50:23.388 -07 000000576 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:50:23.388 -07 000000502 INF: FPGA: Recv ZDACR 38213
17-03-17 22:50:23.398 -07 000000576 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:50:23.398 -07 000000576 INF: Z Motor: MoveAbsStepped took 46 ms (did NOT wait for settling yet))
17-03-17 22:50:23.548 -07 000000482 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:50:23.548 -07 000000551 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-17 22:50:23.548 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 2334002848, 0x0, 391868352) end. Duration was 402 ms.
17-03-17 22:50:23.548 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 22:50:23.548 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:50:23.548 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 2369425112, 0x0, 418435064) end. Duration was 402 ms.
17-03-17 22:50:23.548 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 22:50:23.548 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:50:23.558 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:50:23.558 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-17 22:50:23.558 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:50:23.558 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-17 22:50:23.748 -07 000000541 INF: FPGA: Recv YMVTILE
17-03-17 22:50:23.758 -07 000000382 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 389 ms overall
17-03-17 22:50:23.798 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:50:23.798 -07 000000623 INF: FPGA: Recv YRDPOS 143079
17-03-17 22:50:23.808 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:50:23.808 -07 000000382 INF: Y Motor: Encoder = 143079 = motor step 111780.5 = 69.8628 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:50:23.808 -07 000000382 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-17 22:50:23.808 -07 000000382 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 390 ms, distance = 0.846 mm, average velocity = 2.169 mm/sec
17-03-17 22:50:24.758 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:50:24.758 -07 000000547 INF: FPGA: Recv YRDPOS 143079
17-03-17 22:50:24.768 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:50:24.768 -07 000000382 INF: Y Motor: Encoder = 143079 = motor step 111780.5 = 69.8628 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:50:24.788 -07 000000382 INF: Y Motor: After move to 69.872612, error = -0.009819, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:50:24.788 -07 000000382 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:50:24.788 -07 000000382 INF: Y Motor: Moved to 69.8628 after 1440 ms (table move)
17-03-17 22:50:24.788 -07 000000593 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174928 mm (DAC = 38213)
17-03-17 22:50:24.788 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:24.798 -07 000000618 INF: FPGA: Recv ZSGSRD 36527
17-03-17 22:50:24.798 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-17 22:50:24.798 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:24.798 -07 000000502 INF: FPGA: Recv ZSGSRD 36510
17-03-17 22:50:24.808 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:50:24.808 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:24.808 -07 000000486 INF: FPGA: Recv ZSGSRD 36522
17-03-17 22:50:24.818 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:24.818 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:24.818 -07 000000551 INF: FPGA: Recv ZSGSRD 36528
17-03-17 22:50:24.828 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:24.828 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:24.828 -07 000000482 INF: FPGA: Recv ZSGSRD 36513
17-03-17 22:50:24.838 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:24.838 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:24.838 -07 000000501 INF: FPGA: Recv ZSGSRD 36522
17-03-17 22:50:24.848 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:24.848 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:24.848 -07 000000623 INF: FPGA: Recv ZSGSRD 36514
17-03-17 22:50:24.858 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:24.858 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:24.858 -07 000000551 INF: FPGA: Recv ZSGSRD 36525
17-03-17 22:50:24.868 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:24.868 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:24.868 -07 000000541 INF: FPGA: Recv ZSGSRD 36522
17-03-17 22:50:24.878 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:24.878 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:24.878 -07 000000502 INF: FPGA: Recv ZSGSRD 36521
17-03-17 22:50:24.888 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:24.888 -07 000000593 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:50:24.888 -07 000000409 INF: FPGA: Recv ZPIEZORD 32733
17-03-17 22:50:24.898 -07 000000593 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:24.898 -07 000000593 INF: Z Motor: Piezo is near 49.9 V (nominally 0 to 100 V), expect near 58.3 V, since DAC is at 5.831 V. Piezo Error = -8.4 V.
17-03-17 22:50:24.898 -07 000000593 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.9 um, Read 10 ADC samples: Avg = 36520 (-174.0 uncal um), Error = 0.9 uncal um, Median = 36522 (-174.1 uncal um), StdDev = 6 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 36510 (-174.0 uncal um), Max = 36528 (-174.1 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-17 22:50:24.898 -07 000000593 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36520, posNoise = 8, negNoise = 10
17-03-17 22:50:24.898 -07 000000593 INF: Z Motor: After move to -0.174928, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:50:24.898 -07 000000593 INF: Z Motor: Settle wait time = 1445 ms, measure time = 101 ms (allowed 150 ms), total time = 1546 ms
17-03-17 22:50:24.898 -07 000000593 INF: Z Motor: Waiting extra 49 ms after reading position to reach expected total of 150 ms
17-03-17 22:50:24.948 -07 000000593 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1601 ms
17-03-17 22:50:24.948 -07 000000593 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:50:24.948 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:50:24.948 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:50:24.948 -07 000000415 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:50:24.948 -07 000000541 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:50:24.948 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:50:24.948 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:50:24.948 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:50:24.948 -07 000000541 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:50:24.958 -07 000000541 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:50:24.958 -07 000000541 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:50:24.968 -07 000000541 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 22:50:24.968 -07 000000541 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 22:50:24.968 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:50:25.018 -07 000000541 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:50:25.208 -07 000000547 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:50:25.218 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:50:25.218 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:50:25.218 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2235207384, 0x0, 559484976) start.
17-03-17 22:50:25.248 -07 000000541 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:50:25.258 -07 000000409 INF: FPGA: Recv CAMSNAP
17-03-17 22:50:25.258 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 284 ms overall
17-03-17 22:50:25.328 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2235207384, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 22:50:25.328 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:50:25.328 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:50:25.328 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 22:50:25.358 -07 000000627 INF: Autofocus start
17-03-17 22:50:25.358 -07 000000627 INF: MeasureProfile start
17-03-17 22:50:25.358 -07 000000593 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:50:25.368 -07 000000448 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:50:25.368 -07 000000593 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 7 ms overall
17-03-17 22:50:25.368 -07 000000593 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:50:25.368 -07 000000627 INF: MeasureProfile done
17-03-17 22:50:25.368 -07 000000627 INF: X=32  Z correction [um]=0.09220707
17-03-17 22:50:25.368 -07 000000627 INF: Autofocus finished
17-03-17 22:50:25.568 -07 000000618 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:50:25.568 -07 000000593 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-17 22:50:25.578 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86279296875, Z-position -0.174935579428245. ----------
17-03-17 22:50:25.578 -07 000000610 INF: Cycle	68	Tile	13	Exposure Settings		A	461	G	222	T	222	C	461
17-03-17 22:50:25.578 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36746, sync = True, waitForSettling = True)
17-03-17 22:50:25.578 -07 000000610 INF: Z Motor: Moving to -0.168212 mm, started at -0.174936 mm, distance = 6.72 um
17-03-17 22:50:25.578 -07 000000610 INF: FPGA: Xmit ZDACW 36746\n [Z Motor]
17-03-17 22:50:25.578 -07 000000482 INF: FPGA: Recv ZDACW
17-03-17 22:50:25.588 -07 000000610 INF: FPGA: 'ZDACW 36746' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:50:25.588 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:50:25.588 -07 000000478 INF: FPGA: Recv ZDACR 36746
17-03-17 22:50:25.598 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:25.598 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:50:25.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:25.748 -07 000000618 INF: FPGA: Recv ZSGSRD 35481
17-03-17 22:50:25.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:25.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:25.758 -07 000000462 INF: FPGA: Recv ZSGSRD 35483
17-03-17 22:50:25.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:25.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:25.768 -07 000000541 INF: FPGA: Recv ZSGSRD 35475
17-03-17 22:50:25.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:25.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:25.778 -07 000000482 INF: FPGA: Recv ZSGSRD 35474
17-03-17 22:50:25.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:25.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:25.788 -07 000000478 INF: FPGA: Recv ZSGSRD 35475
17-03-17 22:50:25.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:25.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:25.798 -07 000000409 INF: FPGA: Recv ZSGSRD 35472
17-03-17 22:50:25.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:25.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:25.808 -07 000000462 INF: FPGA: Recv ZSGSRD 35475
17-03-17 22:50:25.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:25.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:25.818 -07 000000382 INF: FPGA: Recv ZSGSRD 35476
17-03-17 22:50:25.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:25.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:25.828 -07 000000482 INF: FPGA: Recv ZSGSRD 35475
17-03-17 22:50:25.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:25.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:25.838 -07 000000623 INF: FPGA: Recv ZSGSRD 35485
17-03-17 22:50:25.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:25.848 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:50:25.848 -07 000000547 INF: FPGA: Recv ZPIEZORD 31384
17-03-17 22:50:25.858 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:25.858 -07 000000610 INF: Z Motor: Piezo is near 47.0 V (nominally 0 to 100 V), expect near 56.1 V, since DAC is at 5.607 V. Piezo Error = -9.0 V.
17-03-17 22:50:25.858 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.2 um, Read 10 ADC samples: Avg = 35477 (-167.4 uncal um), Error = 0.8 uncal um, Median = 35475 (-167.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35472 (-167.3 uncal um), Max = 35485 (-167.4 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 22:50:25.858 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35477, posNoise = 8, negNoise = 5
17-03-17 22:50:25.858 -07 000000610 INF: Z Motor: After move to -0.168212, error = -0.000023, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:50:25.858 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 22:50:25.858 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:50:25.858 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:50:25.858 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:50:25.858 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:50:25.858 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:50:25.858 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:50:25.858 -07 000000448 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:50:25.858 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:50:25.858 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:50:25.858 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:50:25.858 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 22:50:25.858 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:50:25.868 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:50:25.868 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:50:25.868 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:50:25.868 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:50:25.878 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 22:50:25.878 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 22:50:25.878 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 22:50:25.878 -07 000000448 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 22:50:25.878 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 461 461 222 222 36922 150\n [Camera]
17-03-17 22:50:26.078 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:50:26.538 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 653
17-03-17 22:50:26.538 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 653
17-03-17 22:50:26.538 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:50:26.538 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:50:26.538 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-17 22:50:26.538 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 653
17-03-17 22:50:26.538 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 653
17-03-17 22:50:26.538 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:50:26.538 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:50:26.538 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-17 22:50:26.728 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36922 846
17-03-17 22:50:26.878 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP turning grn on 996
17-03-17 22:50:26.918 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 373 ms.
17-03-17 22:50:26.918 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-17 22:50:26.918 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:50:26.918 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:50:26.918 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 382 ms.
17-03-17 22:50:26.918 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 22:50:26.918 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:50:26.928 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:50:26.928 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 22:50:26.928 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-17 22:50:27.008 -07 000000448 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:50:27.008 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 67. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1078, R2=1105, Total=2183. Warn if over 250 bubbles per interval.
17-03-17 22:50:27.098 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1218
17-03-17 22:50:27.098 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1218
17-03-17 22:50:27.098 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:50:27.108 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:50:27.108 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) start.
17-03-17 22:50:27.108 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1218
17-03-17 22:50:27.108 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1218
17-03-17 22:50:27.108 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:50:27.108 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:50:27.108 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 22:50:27.288 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP 1411
17-03-17 22:50:27.298 -07 000000448 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:50:27.298 -07 000000610 INF: FPGA: 'CAMDBLSNAP 461 461 222 222 36922 150' command took 2 ms to send, 1410 ms to get response, and 1418 ms overall
17-03-17 22:50:27.298 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 22:50:27.298 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.86279296875, Z-Position -0.168235126164388. ------
17-03-17 22:50:27.298 -07 000000541 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:50:27.298 -07 000000593 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.17462 mm
17-03-17 22:50:27.298 -07 000000593 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:50:27.308 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:50:27.308 -07 000000415 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-17 22:50:27.308 -07 000000415 INF: Y Motor: Moving to 70.7026 mm, started at 69.8628 mm, delta = 0.8398 mm
17-03-17 22:50:27.308 -07 000000541 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:50:27.308 -07 000000486 INF: Z Motor: Entering MoveAbsStepped (DAC = 38146, sync = True, waitForSettling = False)
17-03-17 22:50:27.308 -07 000000486 INF: Z Motor: Moving to -0.174621 mm, started at -0.168235 mm, distance = -6.39 um
17-03-17 22:50:27.318 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:50:27.318 -07 000000462 INF: FPGA: Recv YRDPOS 143080
17-03-17 22:50:27.328 -07 000000541 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:50:27.328 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:50:27.328 -07 000000415 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:50:27.328 -07 000000415 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:50:27.328 -07 000000415 INF: Y Motor: Moving 1343 steps-20
17-03-17 22:50:27.338 -07 000000486 INF: FPGA: Xmit ZDACW 38146\n [Z Motor]
17-03-17 22:50:27.338 -07 000000618 INF: FPGA: Recv ZDACW
17-03-17 22:50:27.348 -07 000000486 INF: FPGA: 'ZDACW 38146' command took 0 ms to send, 0 ms to get response, and 38 ms overall
17-03-17 22:50:27.348 -07 000000415 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:50:27.358 -07 000000486 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:50:27.358 -07 000000551 INF: FPGA: Recv ZDACR 38146
17-03-17 22:50:27.368 -07 000000486 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:50:27.368 -07 000000486 INF: Z Motor: MoveAbsStepped took 58 ms (did NOT wait for settling yet))
17-03-17 22:50:27.508 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 398 ms.
17-03-17 22:50:27.508 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) end. Duration was 401 ms.
17-03-17 22:50:27.508 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 22:50:27.508 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:50:27.508 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 22:50:27.508 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:50:27.508 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:50:27.508 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 22:50:27.508 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-17 22:50:27.518 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-17 22:50:27.528 -07 000000501 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:50:27.528 -07 000000541 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 221 ms overall
17-03-17 22:50:27.628 -07 000000541 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 68, FrontChillerTemperature: 4.011254,
17-03-17 22:50:27.718 -07 000000486 INF: FPGA: Recv YMVTILE
17-03-17 22:50:27.718 -07 000000415 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-17 22:50:27.758 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:50:27.768 -07 000000501 INF: FPGA: Recv YRDPOS 144769
17-03-17 22:50:27.768 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 22:50:27.768 -07 000000415 INF: Y Motor: Encoder = 144769 = motor step 113100.8 = 70.6880 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:50:27.768 -07 000000415 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-17 22:50:27.768 -07 000000415 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.840 mm, average velocity = 2.132 mm/sec
17-03-17 22:50:28.718 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:50:28.718 -07 000000623 INF: FPGA: Recv YRDPOS 144769
17-03-17 22:50:28.728 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:50:28.728 -07 000000415 INF: Y Motor: Encoder = 144769 = motor step 113100.8 = 70.6880 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:50:28.748 -07 000000415 INF: Y Motor: After move to 70.702606, error = -0.014618, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:50:28.748 -07 000000415 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:50:28.748 -07 000000415 INF: Y Motor: Moved to 70.6880 after 1445 ms (table move)
17-03-17 22:50:28.748 -07 000000593 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174621 mm (DAC = 38146)
17-03-17 22:50:28.758 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:28.758 -07 000000478 INF: FPGA: Recv ZSGSRD 36469
17-03-17 22:50:28.768 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:50:28.768 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:28.768 -07 000000623 INF: FPGA: Recv ZSGSRD 36472
17-03-17 22:50:28.778 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:28.778 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:28.778 -07 000000547 INF: FPGA: Recv ZSGSRD 36475
17-03-17 22:50:28.788 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:28.788 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:28.788 -07 000000618 INF: FPGA: Recv ZSGSRD 36475
17-03-17 22:50:28.798 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:28.798 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:28.798 -07 000000409 INF: FPGA: Recv ZSGSRD 36471
17-03-17 22:50:28.808 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:28.808 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:28.808 -07 000000576 INF: FPGA: Recv ZSGSRD 36471
17-03-17 22:50:28.818 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:28.818 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:28.818 -07 000000547 INF: FPGA: Recv ZSGSRD 36467
17-03-17 22:50:28.828 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:28.828 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:28.828 -07 000000415 INF: FPGA: Recv ZSGSRD 36474
17-03-17 22:50:28.838 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:28.838 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:28.838 -07 000000618 INF: FPGA: Recv ZSGSRD 36469
17-03-17 22:50:28.848 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:28.848 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:28.848 -07 000000482 INF: FPGA: Recv ZSGSRD 36474
17-03-17 22:50:28.858 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:28.858 -07 000000593 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:50:28.858 -07 000000478 INF: FPGA: Recv ZPIEZORD 32682
17-03-17 22:50:28.868 -07 000000593 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:28.868 -07 000000593 INF: Z Motor: Piezo is near 49.8 V (nominally 0 to 100 V), expect near 58.2 V, since DAC is at 5.821 V. Piezo Error = -8.4 V.
17-03-17 22:50:28.868 -07 000000593 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.6 um, Read 10 ADC samples: Avg = 36472 (-173.7 uncal um), Error = 0.9 uncal um, Median = 36472 (-173.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 36467 (-173.7 uncal um), Max = 36475 (-173.8 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 22:50:28.868 -07 000000593 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36472, posNoise = 3, negNoise = 5
17-03-17 22:50:28.868 -07 000000593 INF: Z Motor: After move to -0.174621, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:50:28.868 -07 000000593 INF: Z Motor: Settle wait time = 1448 ms, measure time = 110 ms (allowed 150 ms), total time = 1558 ms
17-03-17 22:50:28.868 -07 000000593 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-17 22:50:28.908 -07 000000593 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1602 ms
17-03-17 22:50:28.908 -07 000000593 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:50:28.908 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:50:28.908 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:50:28.908 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:50:28.908 -07 000000482 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:50:28.908 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:50:28.908 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:50:28.908 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:50:28.908 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:50:28.918 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 22:50:28.918 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:50:28.928 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 22:50:28.928 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 22:50:28.928 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:50:28.978 -07 000000618 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:50:29.178 -07 000000502 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:50:29.178 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:50:29.178 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:50:29.178 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 619685872, 0x0, 559484976) start.
17-03-17 22:50:29.218 -07 000000547 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:50:29.218 -07 000000551 INF: FPGA: Recv CAMSNAP
17-03-17 22:50:29.218 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 284 ms overall
17-03-17 22:50:29.288 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 619685872, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 22:50:29.288 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:50:29.298 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 22:50:29.298 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 22:50:29.318 -07 000000623 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:50:29.318 -07 000000627 INF: Autofocus start
17-03-17 22:50:29.318 -07 000000627 INF: MeasureProfile start
17-03-17 22:50:29.318 -07 000000593 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:50:29.328 -07 000000623 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:50:29.328 -07 000000623 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:50:29.328 -07 000000627 INF: MeasureProfile done
17-03-17 22:50:29.328 -07 000000627 INF: X=16  Z correction [um]=0.01042744
17-03-17 22:50:29.328 -07 000000627 INF: Autofocus finished
17-03-17 22:50:29.528 -07 000000576 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:50:29.528 -07 000000623 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:50:29.528 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.68798828125, Z-position -0.174627217245441. ----------
17-03-17 22:50:29.528 -07 000000610 INF: Cycle	68	Tile	14	Exposure Settings		A	461	G	222	T	222	C	461
17-03-17 22:50:29.538 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36661, sync = True, waitForSettling = True)
17-03-17 22:50:29.538 -07 000000610 INF: Z Motor: Moving to -0.167823 mm, started at -0.174627 mm, distance = 6.80 um
17-03-17 22:50:29.538 -07 000000610 INF: FPGA: Xmit ZDACW 36661\n [Z Motor]
17-03-17 22:50:29.538 -07 000000415 INF: FPGA: Recv ZDACW
17-03-17 22:50:29.548 -07 000000610 INF: FPGA: 'ZDACW 36661' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:29.548 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:50:29.548 -07 000000502 INF: FPGA: Recv ZDACR 36661
17-03-17 22:50:29.558 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:29.558 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:50:29.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:29.708 -07 000000576 INF: FPGA: Recv ZSGSRD 35416
17-03-17 22:50:29.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:50:29.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:29.718 -07 000000618 INF: FPGA: Recv ZSGSRD 35413
17-03-17 22:50:29.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:29.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:29.728 -07 000000482 INF: FPGA: Recv ZSGSRD 35412
17-03-17 22:50:29.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:29.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:29.738 -07 000000382 INF: FPGA: Recv ZSGSRD 35410
17-03-17 22:50:29.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:29.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:29.748 -07 000000478 INF: FPGA: Recv ZSGSRD 35422
17-03-17 22:50:29.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:29.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:29.758 -07 000000501 INF: FPGA: Recv ZSGSRD 35414
17-03-17 22:50:29.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:29.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:29.768 -07 000000618 INF: FPGA: Recv ZSGSRD 35409
17-03-17 22:50:29.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:29.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:29.778 -07 000000409 INF: FPGA: Recv ZSGSRD 35418
17-03-17 22:50:29.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:29.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:29.788 -07 000000382 INF: FPGA: Recv ZSGSRD 35413
17-03-17 22:50:29.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:29.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:29.798 -07 000000551 INF: FPGA: Recv ZSGSRD 35415
17-03-17 22:50:29.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:29.808 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:50:29.808 -07 000000478 INF: FPGA: Recv ZPIEZORD 31330
17-03-17 22:50:29.818 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:29.818 -07 000000610 INF: Z Motor: Piezo is near 46.9 V (nominally 0 to 100 V), expect near 55.9 V, since DAC is at 5.594 V. Piezo Error = -9.0 V.
17-03-17 22:50:29.818 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.8 um, Read 10 ADC samples: Avg = 35414 (-167.0 uncal um), Error = 0.9 uncal um, Median = 35414 (-167.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35409 (-166.9 uncal um), Max = 35422 (-167.0 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 22:50:29.818 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35414, posNoise = 8, negNoise = 5
17-03-17 22:50:29.818 -07 000000610 INF: Z Motor: After move to -0.167823, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:50:29.818 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 22:50:29.818 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:50:29.818 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:50:29.818 -07 000000482 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:50:29.818 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:50:29.818 -07 000000623 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:50:29.818 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:50:29.818 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:50:29.818 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:50:29.818 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:50:29.818 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:50:29.818 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 22:50:29.818 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:50:29.828 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:50:29.828 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 22:50:29.828 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:50:29.828 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:50:29.828 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 22:50:29.828 -07 000000623 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 22:50:29.838 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 22:50:29.838 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 22:50:29.838 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 461 461 222 222 36837 150\n [Camera]
17-03-17 22:50:30.038 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:50:30.498 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 653
17-03-17 22:50:30.498 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 653
17-03-17 22:50:30.498 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:50:30.498 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:50:30.498 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-17 22:50:30.498 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 653
17-03-17 22:50:30.498 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 653
17-03-17 22:50:30.498 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:50:30.498 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:50:30.498 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-17 22:50:30.688 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36837 846
17-03-17 22:50:30.838 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP turning grn on 996
17-03-17 22:50:30.878 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 379 ms.
17-03-17 22:50:30.878 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 22:50:30.878 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:50:30.878 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 22:50:30.878 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-17 22:50:30.878 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:50:30.888 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 22:50:30.888 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 22:50:30.888 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:50:30.888 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 22:50:31.068 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1218
17-03-17 22:50:31.068 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1218
17-03-17 22:50:31.068 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:50:31.068 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:50:31.068 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-17 22:50:31.068 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1218
17-03-17 22:50:31.068 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1218
17-03-17 22:50:31.068 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:50:31.068 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:50:31.068 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-17 22:50:31.258 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP 1410
17-03-17 22:50:31.258 -07 000000593 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:50:31.258 -07 000000610 INF: FPGA: 'CAMDBLSNAP 461 461 222 222 36837 150' command took 2 ms to send, 1412 ms to get response, and 1417 ms overall
17-03-17 22:50:31.258 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 22:50:31.258 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.68798828125, Z-Position -0.167830400799457. ------
17-03-17 22:50:31.258 -07 000000462 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.17404 mm
17-03-17 22:50:31.258 -07 000000462 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:50:31.258 -07 000000623 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:50:31.258 -07 000000448 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-17 22:50:31.258 -07 000000448 INF: Y Motor: Moving to 71.5326 mm, started at 70.6880 mm, delta = 0.8446 mm
17-03-17 22:50:31.258 -07 000000486 INF: Z Motor: Entering MoveAbsStepped (DAC = 38020, sync = True, waitForSettling = False)
17-03-17 22:50:31.258 -07 000000486 INF: Z Motor: Moving to -0.174044 mm, started at -0.167830 mm, distance = -6.21 um
17-03-17 22:50:31.268 -07 000000448 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:50:31.268 -07 000000478 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:50:31.268 -07 000000623 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 3 ms to get response, and 6 ms overall
17-03-17 22:50:31.268 -07 000000409 INF: FPGA: Recv YRDPOS 144770
17-03-17 22:50:31.278 -07 000000448 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:50:31.278 -07 000000448 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:50:31.278 -07 000000486 INF: FPGA: Xmit ZDACW 38020\n [Z Motor]
17-03-17 22:50:31.278 -07 000000547 INF: FPGA: Recv ZDACW
17-03-17 22:50:31.278 -07 000000448 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:50:31.278 -07 000000448 INF: Y Motor: Moving 1351 steps-30
17-03-17 22:50:31.288 -07 000000623 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:50:31.288 -07 000000486 INF: FPGA: 'ZDACW 38020' command took 3 ms to send, 0 ms to get response, and 20 ms overall
17-03-17 22:50:31.298 -07 000000448 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:50:31.308 -07 000000486 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:50:31.308 -07 000000482 INF: FPGA: Recv ZDACR 38020
17-03-17 22:50:31.318 -07 000000486 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:50:31.318 -07 000000486 INF: Z Motor: MoveAbsStepped took 50 ms (did NOT wait for settling yet))
17-03-17 22:50:31.468 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 401 ms.
17-03-17 22:50:31.468 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 22:50:31.468 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:50:31.468 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 401 ms.
17-03-17 22:50:31.468 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 22:50:31.468 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:50:31.478 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:50:31.478 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 22:50:31.478 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-17 22:50:31.478 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-17 22:50:31.488 -07 000000382 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:50:31.488 -07 000000623 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 219 ms overall
17-03-17 22:50:31.668 -07 000000618 INF: FPGA: Recv YMVTILE
17-03-17 22:50:31.668 -07 000000448 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 391 ms overall
17-03-17 22:50:31.708 -07 000000448 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:50:31.718 -07 000000501 INF: FPGA: Recv YRDPOS 146470
17-03-17 22:50:31.718 -07 000000448 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 22:50:31.718 -07 000000448 INF: Y Motor: Encoder = 146470 = motor step 114429.7 = 71.5186 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:50:31.718 -07 000000448 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-17 22:50:31.718 -07 000000448 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 391 ms, distance = 0.845 mm, average velocity = 2.160 mm/sec
17-03-17 22:50:32.008 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:50:32.008 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 67. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1078, R2=1105, Total=2183. Warn if over 250 bubbles per interval.
17-03-17 22:50:32.668 -07 000000448 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:50:32.668 -07 000000482 INF: FPGA: Recv YRDPOS 146470
17-03-17 22:50:32.678 -07 000000448 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:50:32.678 -07 000000448 INF: Y Motor: Encoder = 146470 = motor step 114429.7 = 71.5186 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:50:32.698 -07 000000448 INF: Y Motor: After move to 71.532608, error = -0.014053, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:50:32.698 -07 000000448 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:50:32.698 -07 000000448 INF: Y Motor: Moved to 71.5186 after 1438 ms (table move)
17-03-17 22:50:32.708 -07 000000462 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174044 mm (DAC = 38020)
17-03-17 22:50:32.708 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:32.708 -07 000000415 INF: FPGA: Recv ZSGSRD 36389
17-03-17 22:50:32.718 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:50:32.718 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:32.718 -07 000000502 INF: FPGA: Recv ZSGSRD 36385
17-03-17 22:50:32.728 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:32.728 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:32.728 -07 000000593 INF: FPGA: Recv ZSGSRD 36382
17-03-17 22:50:32.738 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:32.738 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:32.738 -07 000000541 INF: FPGA: Recv ZSGSRD 36386
17-03-17 22:50:32.748 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:32.748 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:32.748 -07 000000547 INF: FPGA: Recv ZSGSRD 36381
17-03-17 22:50:32.758 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:32.758 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:32.758 -07 000000382 INF: FPGA: Recv ZSGSRD 36377
17-03-17 22:50:32.768 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:32.768 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:32.768 -07 000000541 INF: FPGA: Recv ZSGSRD 36383
17-03-17 22:50:32.778 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:32.778 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:32.778 -07 000000448 INF: FPGA: Recv ZSGSRD 36376
17-03-17 22:50:32.788 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:32.788 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:32.788 -07 000000486 INF: FPGA: Recv ZSGSRD 36383
17-03-17 22:50:32.798 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:32.798 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:32.798 -07 000000593 INF: FPGA: Recv ZSGSRD 36382
17-03-17 22:50:32.808 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:32.808 -07 000000462 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:50:32.808 -07 000000576 INF: FPGA: Recv ZPIEZORD 32611
17-03-17 22:50:32.818 -07 000000462 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:32.818 -07 000000462 INF: Z Motor: Piezo is near 49.7 V (nominally 0 to 100 V), expect near 58.0 V, since DAC is at 5.801 V. Piezo Error = -8.3 V.
17-03-17 22:50:32.818 -07 000000462 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.0 um, Read 10 ADC samples: Avg = 36382 (-173.2 uncal um), Error = 0.9 uncal um, Median = 36382 (-173.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36376 (-173.1 uncal um), Max = 36389 (-173.2 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 22:50:32.818 -07 000000462 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36382, posNoise = 7, negNoise = 6
17-03-17 22:50:32.818 -07 000000462 INF: Z Motor: After move to -0.174044, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:50:32.818 -07 000000462 INF: Z Motor: Settle wait time = 1443 ms, measure time = 108 ms (allowed 150 ms), total time = 1551 ms
17-03-17 22:50:32.818 -07 000000462 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-17 22:50:32.868 -07 000000462 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1603 ms
17-03-17 22:50:32.868 -07 000000462 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:50:32.868 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:50:32.868 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:50:32.868 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:50:32.868 -07 000000593 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:50:32.868 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:50:32.868 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:50:32.868 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:50:32.868 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:50:32.878 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:50:32.878 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:50:32.888 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 22:50:32.888 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 22:50:32.888 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:50:32.938 -07 000000502 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:50:32.998 -07 000000482 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 68, FrontChillerTemperature: 3.997626,
17-03-17 22:50:33.138 -07 000000462 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:50:33.138 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:50:33.138 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:50:33.138 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2404847376, 0x0, 559484976) start.
17-03-17 22:50:33.178 -07 000000482 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:50:33.178 -07 000000618 INF: FPGA: Recv CAMSNAP
17-03-17 22:50:33.178 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 285 ms overall
17-03-17 22:50:33.248 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2404847376, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 22:50:33.248 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:50:33.258 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 22:50:33.258 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 22:50:33.278 -07 000000382 INF: Autofocus start
17-03-17 22:50:33.278 -07 000000382 INF: MeasureProfile start
17-03-17 22:50:33.278 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:50:33.278 -07 000000551 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:50:33.288 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:50:33.288 -07 000000502 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:50:33.288 -07 000000382 INF: MeasureProfile done
17-03-17 22:50:33.288 -07 000000382 INF: X=0  Z correction [um]=-0.0713522
17-03-17 22:50:33.288 -07 000000382 INF: Autofocus finished
17-03-17 22:50:33.488 -07 000000593 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:50:33.488 -07 000000502 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:50:33.498 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.5185546875, Z-position -0.174049038152682. ----------
17-03-17 22:50:33.498 -07 000000610 INF: Cycle	68	Tile	15	Exposure Settings		A	461	G	222	T	222	C	461
17-03-17 22:50:33.498 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36517, sync = True, waitForSettling = True)
17-03-17 22:50:33.498 -07 000000610 INF: Z Motor: Moving to -0.167164 mm, started at -0.174049 mm, distance = 6.88 um
17-03-17 22:50:33.498 -07 000000610 INF: FPGA: Xmit ZDACW 36517\n [Z Motor]
17-03-17 22:50:33.498 -07 000000448 INF: FPGA: Recv ZDACW
17-03-17 22:50:33.508 -07 000000610 INF: FPGA: 'ZDACW 36517' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:50:33.508 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:50:33.508 -07 000000415 INF: FPGA: Recv ZDACR 36517
17-03-17 22:50:33.518 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:33.518 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:50:33.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:33.668 -07 000000382 INF: FPGA: Recv ZSGSRD 35311
17-03-17 22:50:33.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:50:33.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:33.678 -07 000000623 INF: FPGA: Recv ZSGSRD 35308
17-03-17 22:50:33.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:33.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:33.688 -07 000000576 INF: FPGA: Recv ZSGSRD 35314
17-03-17 22:50:33.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:33.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:33.698 -07 000000448 INF: FPGA: Recv ZSGSRD 35307
17-03-17 22:50:33.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:33.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:33.708 -07 000000502 INF: FPGA: Recv ZSGSRD 35310
17-03-17 22:50:33.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:33.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:33.718 -07 000000382 INF: FPGA: Recv ZSGSRD 35317
17-03-17 22:50:33.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:33.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:33.728 -07 000000482 INF: FPGA: Recv ZSGSRD 35309
17-03-17 22:50:33.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:33.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:33.738 -07 000000547 INF: FPGA: Recv ZSGSRD 35311
17-03-17 22:50:33.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:33.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:33.748 -07 000000448 INF: FPGA: Recv ZSGSRD 35311
17-03-17 22:50:33.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:33.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:33.758 -07 000000541 INF: FPGA: Recv ZSGSRD 35314
17-03-17 22:50:33.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:33.768 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:50:33.768 -07 000000415 INF: FPGA: Recv ZPIEZORD 31175
17-03-17 22:50:33.778 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:33.778 -07 000000610 INF: Z Motor: Piezo is near 46.6 V (nominally 0 to 100 V), expect near 55.7 V, since DAC is at 5.572 V. Piezo Error = -9.1 V.
17-03-17 22:50:33.778 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.2 um, Read 10 ADC samples: Avg = 35311 (-166.3 uncal um), Error = 0.9 uncal um, Median = 35311 (-166.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35307 (-166.3 uncal um), Max = 35317 (-166.3 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 22:50:33.778 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35311, posNoise = 6, negNoise = 4
17-03-17 22:50:33.778 -07 000000610 INF: Z Motor: After move to -0.167164, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:50:33.778 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 22:50:33.778 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:50:33.778 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:50:33.778 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:50:33.778 -07 000000478 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:50:33.778 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:50:33.778 -07 000000551 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:50:33.778 -07 000000627 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:50:33.778 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:50:33.778 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 22:50:33.778 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:50:33.778 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:50:33.778 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:50:33.788 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 22:50:33.788 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:50:33.788 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 22:50:33.788 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:50:33.798 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 22:50:33.798 -07 000000478 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 22:50:33.798 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 22:50:33.798 -07 000000627 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 22:50:33.798 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 461 461 222 222 36693 150\n [Camera]
17-03-17 22:50:33.998 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:50:34.458 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 657
17-03-17 22:50:34.458 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 657
17-03-17 22:50:34.468 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:50:34.468 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:50:34.468 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) start.
17-03-17 22:50:34.468 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 657
17-03-17 22:50:34.468 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 657
17-03-17 22:50:34.468 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:50:34.468 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:50:34.468 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-17 22:50:34.648 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36693 846
17-03-17 22:50:34.798 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning grn on 996
17-03-17 22:50:34.838 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 368 ms.
17-03-17 22:50:34.838 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 368 ms.
17-03-17 22:50:34.838 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:50:34.838 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 22:50:34.838 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 22:50:34.838 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:50:34.838 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:50:34.848 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:50:34.848 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 22:50:34.848 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-17 22:50:35.028 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1218
17-03-17 22:50:35.028 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1218
17-03-17 22:50:35.028 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:50:35.028 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:50:35.028 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) start.
17-03-17 22:50:35.028 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1218
17-03-17 22:50:35.028 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1218
17-03-17 22:50:35.028 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:50:35.028 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:50:35.028 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 2620985504, 0x0, 418435064) start.
17-03-17 22:50:35.218 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP 1410
17-03-17 22:50:35.218 -07 000000501 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:50:35.218 -07 000000610 INF: FPGA: 'CAMDBLSNAP 461 461 222 222 36693 150' command took 2 ms to send, 1412 ms to get response, and 1417 ms overall
17-03-17 22:50:35.218 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 22:50:35.218 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.5185546875, Z-Position -0.167168706948856. ------
17-03-17 22:50:35.218 -07 000000623 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:50:35.218 -07 000000409 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.17361 mm
17-03-17 22:50:35.218 -07 000000409 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:50:35.228 -07 000000478 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:50:35.228 -07 000000623 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 22:50:35.228 -07 000000482 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-17 22:50:35.228 -07 000000482 INF: Y Motor: Moving to 72.3626 mm, started at 71.5186 mm, delta = 0.8441 mm
17-03-17 22:50:35.228 -07 000000623 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:50:35.228 -07 000000486 INF: Z Motor: Entering MoveAbsStepped (DAC = 37925, sync = True, waitForSettling = False)
17-03-17 22:50:35.228 -07 000000486 INF: Z Motor: Moving to -0.173610 mm, started at -0.167169 mm, distance = -6.44 um
17-03-17 22:50:35.238 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:50:35.238 -07 000000541 INF: FPGA: Recv YRDPOS 146470
17-03-17 22:50:35.248 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-17 22:50:35.248 -07 000000482 INF: Y Motor: Encoder = 146470 = motor step 114429.7 = 71.5186 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:50:35.248 -07 000000482 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:50:35.248 -07 000000482 INF: Y Motor: Moving 1350 steps-29
17-03-17 22:50:35.248 -07 000000486 INF: FPGA: Xmit ZDACW 37925\n [Z Motor]
17-03-17 22:50:35.248 -07 000000478 INF: FPGA: Recv ZDACW
17-03-17 22:50:35.258 -07 000000486 INF: FPGA: 'ZDACW 37925' command took 1 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 22:50:35.258 -07 000000486 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:50:35.258 -07 000000547 INF: FPGA: Recv ZDACR 37925
17-03-17 22:50:35.268 -07 000000486 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:35.268 -07 000000486 INF: Z Motor: MoveAbsStepped took 37 ms (did NOT wait for settling yet))
17-03-17 22:50:35.268 -07 000000482 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:50:35.418 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 2620985504, 0x0, 418435064) end. Duration was 392 ms.
17-03-17 22:50:35.418 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 22:50:35.418 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:50:35.418 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) end. Duration was 396 ms.
17-03-17 22:50:35.418 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 22:50:35.418 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:50:35.428 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:50:35.428 -07 000000415 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:50:35.428 -07 000000623 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 202 ms overall
17-03-17 22:50:35.428 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-17 22:50:35.428 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 22:50:35.438 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-17 22:50:35.638 -07 000000502 INF: FPGA: Recv YMVTILE
17-03-17 22:50:35.638 -07 000000482 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 398 ms overall
17-03-17 22:50:35.688 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:50:35.688 -07 000000627 INF: FPGA: Recv YRDPOS 148171
17-03-17 22:50:35.698 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:35.698 -07 000000482 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:50:35.698 -07 000000482 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 22:50:35.698 -07 000000482 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.844 mm, average velocity = 2.121 mm/sec
17-03-17 22:50:36.648 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:50:36.648 -07 000000501 INF: FPGA: Recv YRDPOS 148171
17-03-17 22:50:36.658 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:50:36.658 -07 000000482 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:50:36.678 -07 000000482 INF: Y Motor: After move to 72.362610, error = -0.013489, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:50:36.678 -07 000000482 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:50:36.678 -07 000000482 INF: Y Motor: Moved to 72.3491 after 1453 ms (table move)
17-03-17 22:50:36.678 -07 000000409 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173610 mm (DAC = 37925)
17-03-17 22:50:36.678 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:36.688 -07 000000382 INF: FPGA: Recv ZSGSRD 36316
17-03-17 22:50:36.688 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-17 22:50:36.688 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:36.688 -07 000000501 INF: FPGA: Recv ZSGSRD 36306
17-03-17 22:50:36.698 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:50:36.698 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:36.698 -07 000000623 INF: FPGA: Recv ZSGSRD 36314
17-03-17 22:50:36.708 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:36.708 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:36.708 -07 000000576 INF: FPGA: Recv ZSGSRD 36319
17-03-17 22:50:36.718 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:36.718 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:36.718 -07 000000382 INF: FPGA: Recv ZSGSRD 36315
17-03-17 22:50:36.728 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:36.728 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:36.728 -07 000000547 INF: FPGA: Recv ZSGSRD 36315
17-03-17 22:50:36.738 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:36.738 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:36.738 -07 000000618 INF: FPGA: Recv ZSGSRD 36317
17-03-17 22:50:36.748 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:36.748 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:36.748 -07 000000541 INF: FPGA: Recv ZSGSRD 36314
17-03-17 22:50:36.758 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:36.758 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:36.758 -07 000000627 INF: FPGA: Recv ZSGSRD 36316
17-03-17 22:50:36.768 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:36.768 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:36.768 -07 000000382 INF: FPGA: Recv ZSGSRD 36308
17-03-17 22:50:36.778 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:36.778 -07 000000409 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:50:36.778 -07 000000415 INF: FPGA: Recv ZPIEZORD 32509
17-03-17 22:50:36.788 -07 000000409 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:36.788 -07 000000409 INF: Z Motor: Piezo is near 49.4 V (nominally 0 to 100 V), expect near 57.9 V, since DAC is at 5.787 V. Piezo Error = -8.4 V.
17-03-17 22:50:36.788 -07 000000409 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.6 um, Read 10 ADC samples: Avg = 36314 (-172.7 uncal um), Error = 0.9 uncal um, Median = 36315 (-172.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36306 (-172.7 uncal um), Max = 36319 (-172.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 22:50:36.788 -07 000000409 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36314, posNoise = 5, negNoise = 8
17-03-17 22:50:36.788 -07 000000409 INF: Z Motor: After move to -0.173610, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:50:36.788 -07 000000409 INF: Z Motor: Settle wait time = 1456 ms, measure time = 101 ms (allowed 150 ms), total time = 1557 ms
17-03-17 22:50:36.788 -07 000000409 INF: Z Motor: Waiting extra 49 ms after reading position to reach expected total of 150 ms
17-03-17 22:50:36.838 -07 000000409 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1610 ms
17-03-17 22:50:36.838 -07 000000409 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:50:36.838 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:50:36.838 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:50:36.838 -07 000000547 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:50:36.838 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:50:36.838 -07 000000478 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:50:36.838 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:50:36.838 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:50:36.838 -07 000000478 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:50:36.848 -07 000000478 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 22:50:36.848 -07 000000478 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:50:36.858 -07 000000478 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 22:50:36.858 -07 000000478 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-17 22:50:36.858 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:50:36.908 -07 000000501 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:50:37.008 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:50:37.008 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 67. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1078, R2=1105, Total=2183. Warn if over 250 bubbles per interval.
17-03-17 22:50:37.108 -07 000000448 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:50:37.108 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:50:37.108 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:50:37.108 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1512312592, 0x0, 559484976) start.
17-03-17 22:50:37.148 -07 000000627 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:50:37.148 -07 000000547 INF: FPGA: Recv CAMSNAP
17-03-17 22:50:37.148 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 286 ms to get response, and 287 ms overall
17-03-17 22:50:37.228 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1512312592, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 22:50:37.228 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:50:37.228 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 22:50:37.228 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 22:50:37.248 -07 000000501 INF: Autofocus start
17-03-17 22:50:37.248 -07 000000501 INF: MeasureProfile start
17-03-17 22:50:37.248 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:50:37.248 -07 000000593 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:50:37.258 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:50:37.258 -07 000000576 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:50:37.258 -07 000000501 INF: MeasureProfile done
17-03-17 22:50:37.258 -07 000000501 INF: X=16  Z correction [um]=0.01042744
17-03-17 22:50:37.258 -07 000000501 INF: Autofocus finished
17-03-17 22:50:37.458 -07 000000593 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:50:37.458 -07 000000576 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:50:37.458 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.34912109375, Z-position -0.173612191727042. ----------
17-03-17 22:50:37.458 -07 000000610 INF: Cycle	68	Tile	16	Exposure Settings		A	461	G	222	T	222	C	461
17-03-17 22:50:37.468 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36440, sync = True, waitForSettling = True)
17-03-17 22:50:37.468 -07 000000610 INF: Z Motor: Moving to -0.166812 mm, started at -0.173612 mm, distance = 6.80 um
17-03-17 22:50:37.468 -07 000000610 INF: FPGA: Xmit ZDACW 36440\n [Z Motor]
17-03-17 22:50:37.468 -07 000000478 INF: FPGA: Recv ZDACW
17-03-17 22:50:37.478 -07 000000610 INF: FPGA: 'ZDACW 36440' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:50:37.478 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:50:37.478 -07 000000547 INF: FPGA: Recv ZDACR 36440
17-03-17 22:50:37.488 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:37.488 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:50:37.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:37.638 -07 000000627 INF: FPGA: Recv ZSGSRD 35261
17-03-17 22:50:37.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:50:37.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:37.648 -07 000000501 INF: FPGA: Recv ZSGSRD 35255
17-03-17 22:50:37.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:37.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:37.658 -07 000000382 INF: FPGA: Recv ZSGSRD 35253
17-03-17 22:50:37.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:37.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:37.668 -07 000000623 INF: FPGA: Recv ZSGSRD 35251
17-03-17 22:50:37.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:37.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:37.678 -07 000000415 INF: FPGA: Recv ZSGSRD 35258
17-03-17 22:50:37.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:37.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:37.688 -07 000000627 INF: FPGA: Recv ZSGSRD 35261
17-03-17 22:50:37.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:37.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:37.698 -07 000000501 INF: FPGA: Recv ZSGSRD 35252
17-03-17 22:50:37.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:37.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:37.708 -07 000000382 INF: FPGA: Recv ZSGSRD 35261
17-03-17 22:50:37.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:37.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:37.718 -07 000000623 INF: FPGA: Recv ZSGSRD 35260
17-03-17 22:50:37.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:37.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:37.728 -07 000000415 INF: FPGA: Recv ZSGSRD 35257
17-03-17 22:50:37.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:37.738 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:50:37.738 -07 000000502 INF: FPGA: Recv ZPIEZORD 31129
17-03-17 22:50:37.748 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:50:37.748 -07 000000610 INF: Z Motor: Piezo is near 46.5 V (nominally 0 to 100 V), expect near 55.6 V, since DAC is at 5.560 V. Piezo Error = -9.1 V.
17-03-17 22:50:37.748 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.8 um, Read 10 ADC samples: Avg = 35257 (-166.0 uncal um), Error = 0.9 uncal um, Median = 35258 (-166.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35251 (-165.9 uncal um), Max = 35261 (-166.0 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 22:50:37.748 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35257, posNoise = 4, negNoise = 6
17-03-17 22:50:37.748 -07 000000610 INF: Z Motor: After move to -0.166812, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:50:37.748 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 22:50:37.748 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:50:37.748 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:50:37.748 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:50:37.748 -07 000000593 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:50:37.748 -07 000000551 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:50:37.748 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:50:37.748 -07 000000627 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:50:37.748 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:50:37.748 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:50:37.748 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:50:37.748 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:50:37.748 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:50:37.748 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 22:50:37.748 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:50:37.748 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 22:50:37.748 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:50:37.758 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 22:50:37.758 -07 000000551 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 12 ms.
17-03-17 22:50:37.758 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 22:50:37.758 -07 000000627 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 22:50:37.768 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 461 461 222 222 36616 150\n [Camera]
17-03-17 22:50:37.968 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:50:38.368 -07 000000478 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 68, FrontChillerTemperature: 4.012614,
17-03-17 22:50:38.428 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 653
17-03-17 22:50:38.428 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 653
17-03-17 22:50:38.428 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:50:38.428 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:50:38.428 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) start.
17-03-17 22:50:38.428 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 653
17-03-17 22:50:38.428 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 653
17-03-17 22:50:38.428 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:50:38.428 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:50:38.428 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 2719780968, 0x0, 418435064) start.
17-03-17 22:50:38.618 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36616 846
17-03-17 22:50:38.768 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP turning grn on 998
17-03-17 22:50:38.798 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 2719780968, 0x0, 418435064) end. Duration was 369 ms.
17-03-17 22:50:38.798 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 370 ms.
17-03-17 22:50:38.798 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:50:38.798 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:50:38.808 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 22:50:38.808 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-17 22:50:38.808 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:50:38.808 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:50:38.808 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 22:50:38.808 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-17 22:50:38.988 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1218
17-03-17 22:50:38.988 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1218
17-03-17 22:50:38.988 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:50:39.128 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1218
17-03-17 22:50:39.128 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1218
17-03-17 22:50:39.128 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:50:39.128 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:50:39.128 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 2755203232, 0x0, 391868352) start.
17-03-17 22:50:39.128 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:50:39.128 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) start.
17-03-17 22:50:39.178 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP 1411
17-03-17 22:50:39.178 -07 000000409 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:50:39.178 -07 000000610 INF: FPGA: 'CAMDBLSNAP 461 461 222 222 36616 150' command took 3 ms to send, 1408 ms to get response, and 1418 ms overall
17-03-17 22:50:39.188 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 22:50:39.188 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.34912109375, Z-Position -0.166821799493201. ------
17-03-17 22:50:39.188 -07 000000623 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:50:39.188 -07 000000593 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.17326 mm
17-03-17 22:50:39.188 -07 000000593 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:50:39.188 -07 000000501 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-17 22:50:39.188 -07 000000501 INF: Y Motor: Moving to 73.1926 mm, started at 72.3491 mm, delta = 0.8435 mm
17-03-17 22:50:39.188 -07 000000627 INF: Z Motor: Entering MoveAbsStepped (DAC = 37849, sync = True, waitForSettling = False)
17-03-17 22:50:39.188 -07 000000551 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:50:39.188 -07 000000627 INF: Z Motor: Moving to -0.173262 mm, started at -0.166822 mm, distance = -6.44 um
17-03-17 22:50:39.198 -07 000000623 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 22:50:39.198 -07 000000627 INF: FPGA: Xmit ZDACW 37849\n [Z Motor]
17-03-17 22:50:39.198 -07 000000409 INF: FPGA: Recv ZDACW
17-03-17 22:50:39.208 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:50:39.208 -07 000000627 INF: FPGA: 'ZDACW 37849' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 22:50:39.208 -07 000000502 INF: FPGA: Recv YRDPOS 148171
17-03-17 22:50:39.218 -07 000000623 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:50:39.218 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-17 22:50:39.218 -07 000000501 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:50:39.218 -07 000000501 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:50:39.218 -07 000000501 INF: Y Motor: Moving 1350 steps-28
17-03-17 22:50:39.228 -07 000000627 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:50:39.228 -07 000000482 INF: FPGA: Recv ZDACR 37849
17-03-17 22:50:39.238 -07 000000501 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:50:39.238 -07 000000627 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:50:39.238 -07 000000627 INF: Z Motor: MoveAbsStepped took 42 ms (did NOT wait for settling yet))
17-03-17 22:50:39.418 -07 000000482 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:50:39.418 -07 000000623 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 22:50:39.528 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) end. Duration was 391 ms.
17-03-17 22:50:39.528 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 22:50:39.528 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:50:39.528 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 2755203232, 0x0, 391868352) end. Duration was 396 ms.
17-03-17 22:50:39.528 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 22:50:39.528 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:50:39.528 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:50:39.528 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:50:39.528 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 537 ms.
17-03-17 22:50:39.538 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-17 22:50:39.608 -07 000000618 INF: FPGA: Recv YMVTILE
17-03-17 22:50:39.608 -07 000000501 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-17 22:50:39.648 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:50:39.658 -07 000000627 INF: FPGA: Recv YRDPOS 149863
17-03-17 22:50:39.658 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:50:39.658 -07 000000501 INF: Y Motor: Encoder = 149863 = motor step 117080.5 = 73.1753 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:50:39.658 -07 000000501 INF: Y Motor: Position error before settling (table move) = -35 encoder counts (-0.017 mm)
17-03-17 22:50:39.658 -07 000000501 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.843 mm, average velocity = 2.135 mm/sec
17-03-17 22:50:40.608 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:50:40.608 -07 000000627 INF: FPGA: Recv YRDPOS 149864
17-03-17 22:50:40.618 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:50:40.618 -07 000000501 INF: Y Motor: Encoder = 149864 = motor step 117081.3 = 73.1758 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:50:40.638 -07 000000501 INF: Y Motor: After move to 73.192604, error = -0.016823, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:50:40.638 -07 000000501 INF: Y Motor: Position error after settling (table move) = -34 encoder counts (-0.017 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 22:50:40.638 -07 000000501 INF: Y Motor: Moved to 73.1758 after 1447 ms (table move)
17-03-17 22:50:40.638 -07 000000593 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173262 mm (DAC = 37849)
17-03-17 22:50:40.638 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:40.648 -07 000000382 INF: FPGA: Recv ZSGSRD 36265
17-03-17 22:50:40.648 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 22:50:40.648 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:40.648 -07 000000415 INF: FPGA: Recv ZSGSRD 36259
17-03-17 22:50:40.658 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:50:40.658 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:40.658 -07 000000462 INF: FPGA: Recv ZSGSRD 36258
17-03-17 22:50:40.668 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:40.668 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:40.668 -07 000000576 INF: FPGA: Recv ZSGSRD 36260
17-03-17 22:50:40.678 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:40.678 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:40.678 -07 000000541 INF: FPGA: Recv ZSGSRD 36271
17-03-17 22:50:40.688 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:40.688 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:40.688 -07 000000415 INF: FPGA: Recv ZSGSRD 36268
17-03-17 22:50:40.698 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:40.698 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:40.698 -07 000000462 INF: FPGA: Recv ZSGSRD 36259
17-03-17 22:50:40.708 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:40.708 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:40.708 -07 000000448 INF: FPGA: Recv ZSGSRD 36264
17-03-17 22:50:40.718 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:40.718 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:40.718 -07 000000409 INF: FPGA: Recv ZSGSRD 36256
17-03-17 22:50:40.728 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:40.728 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:40.728 -07 000000623 INF: FPGA: Recv ZSGSRD 36258
17-03-17 22:50:40.738 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:40.738 -07 000000593 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:50:40.738 -07 000000482 INF: FPGA: Recv ZPIEZORD 32467
17-03-17 22:50:40.748 -07 000000593 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:40.748 -07 000000593 INF: Z Motor: Piezo is near 49.4 V (nominally 0 to 100 V), expect near 57.8 V, since DAC is at 5.775 V. Piezo Error = -8.4 V.
17-03-17 22:50:40.748 -07 000000593 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.3 um, Read 10 ADC samples: Avg = 36262 (-172.4 uncal um), Error = 0.9 uncal um, Median = 36260 (-172.4 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 36256 (-172.4 uncal um), Max = 36271 (-172.5 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 22:50:40.748 -07 000000593 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36262, posNoise = 9, negNoise = 6
17-03-17 22:50:40.748 -07 000000593 INF: Z Motor: After move to -0.173262, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:50:40.748 -07 000000593 INF: Z Motor: Settle wait time = 1450 ms, measure time = 102 ms (allowed 150 ms), total time = 1552 ms
17-03-17 22:50:40.748 -07 000000593 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 22:50:40.798 -07 000000593 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1605 ms
17-03-17 22:50:40.798 -07 000000593 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:50:40.798 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:50:40.798 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:50:40.798 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:50:40.798 -07 000000623 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:50:40.798 -07 000000409 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:50:40.798 -07 000000409 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:50:40.798 -07 000000409 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:50:40.808 -07 000000409 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:50:40.808 -07 000000409 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:50:40.808 -07 000000409 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:50:40.818 -07 000000409 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 22:50:40.818 -07 000000409 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 22:50:40.818 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:50:40.868 -07 000000502 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:50:41.068 -07 000000382 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:50:41.068 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:50:41.068 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:50:41.068 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2147487792, 0x0, 559484976) start.
17-03-17 22:50:41.098 -07 000000482 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:50:41.108 -07 000000576 INF: FPGA: Recv CAMSNAP
17-03-17 22:50:41.108 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 284 ms overall
17-03-17 22:50:41.188 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2147487792, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 22:50:41.188 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:50:41.198 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:50:41.198 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-17 22:50:41.208 -07 000000415 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:50:41.208 -07 000000618 INF: Autofocus start
17-03-17 22:50:41.208 -07 000000618 INF: MeasureProfile start
17-03-17 22:50:41.208 -07 000000486 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:50:41.218 -07 000000415 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:50:41.218 -07 000000415 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:50:41.228 -07 000000618 INF: MeasureProfile done
17-03-17 22:50:41.228 -07 000000618 INF: X=32  Z correction [um]=0.09220707
17-03-17 22:50:41.228 -07 000000618 INF: Autofocus finished
17-03-17 22:50:41.418 -07 000000547 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:50:41.418 -07 000000415 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:50:41.418 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.17578125, Z-position -0.173278132695671. ----------
17-03-17 22:50:41.428 -07 000000610 INF: Cycle	68	Tile	17	Exposure Settings		A	461	G	222	T	222	C	461
17-03-17 22:50:41.428 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36382, sync = True, waitForSettling = True)
17-03-17 22:50:41.428 -07 000000610 INF: Z Motor: Moving to -0.166546 mm, started at -0.173278 mm, distance = 6.73 um
17-03-17 22:50:41.428 -07 000000610 INF: FPGA: Xmit ZDACW 36382\n [Z Motor]
17-03-17 22:50:41.428 -07 000000551 INF: FPGA: Recv ZDACW
17-03-17 22:50:41.438 -07 000000610 INF: FPGA: 'ZDACW 36382' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:50:41.438 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:50:41.438 -07 000000623 INF: FPGA: Recv ZDACR 36382
17-03-17 22:50:41.448 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:41.448 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:50:41.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:41.598 -07 000000502 INF: FPGA: Recv ZSGSRD 35215
17-03-17 22:50:41.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:50:41.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:41.608 -07 000000482 INF: FPGA: Recv ZSGSRD 35213
17-03-17 22:50:41.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:41.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:41.618 -07 000000627 INF: FPGA: Recv ZSGSRD 35219
17-03-17 22:50:41.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:41.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:41.628 -07 000000478 INF: FPGA: Recv ZSGSRD 35216
17-03-17 22:50:41.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:41.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:41.638 -07 000000382 INF: FPGA: Recv ZSGSRD 35220
17-03-17 22:50:41.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:41.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:41.648 -07 000000547 INF: FPGA: Recv ZSGSRD 35215
17-03-17 22:50:41.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:41.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:41.658 -07 000000501 INF: FPGA: Recv ZSGSRD 35214
17-03-17 22:50:41.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:41.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:41.668 -07 000000623 INF: FPGA: Recv ZSGSRD 35219
17-03-17 22:50:41.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:41.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:41.678 -07 000000502 INF: FPGA: Recv ZSGSRD 35214
17-03-17 22:50:41.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:41.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:41.688 -07 000000482 INF: FPGA: Recv ZSGSRD 35216
17-03-17 22:50:41.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:41.698 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:50:41.698 -07 000000551 INF: FPGA: Recv ZPIEZORD 31076
17-03-17 22:50:41.708 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:41.708 -07 000000610 INF: Z Motor: Piezo is near 46.4 V (nominally 0 to 100 V), expect near 55.5 V, since DAC is at 5.552 V. Piezo Error = -9.1 V.
17-03-17 22:50:41.708 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.5 um, Read 10 ADC samples: Avg = 35216 (-165.7 uncal um), Error = 0.9 uncal um, Median = 35216 (-165.7 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 35213 (-165.7 uncal um), Max = 35220 (-165.7 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 22:50:41.708 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35216, posNoise = 4, negNoise = 3
17-03-17 22:50:41.708 -07 000000610 INF: Z Motor: After move to -0.166546, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:50:41.708 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-17 22:50:41.708 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:50:41.708 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:50:41.708 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:50:41.708 -07 000000486 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:50:41.708 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:50:41.708 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:50:41.708 -07 000000482 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:50:41.708 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:50:41.708 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:50:41.708 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:50:41.708 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:50:41.708 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:50:41.718 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:50:41.718 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:50:41.718 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 22:50:41.718 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:50:41.718 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 22:50:41.728 -07 000000482 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 22:50:41.728 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 22:50:41.728 -07 000000486 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 22:50:41.728 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 461 461 222 222 36558 150\n [Camera]
17-03-17 22:50:41.928 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:50:42.008 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:50:42.008 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 67. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1078, R2=1105, Total=2183. Warn if over 250 bubbles per interval.
17-03-17 22:50:42.388 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 653
17-03-17 22:50:42.388 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 653
17-03-17 22:50:42.388 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:50:42.388 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 653
17-03-17 22:50:42.388 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 653
17-03-17 22:50:42.388 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:50:42.388 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:50:42.388 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2166569176, 0x0, 391868352) start.
17-03-17 22:50:42.398 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:50:42.398 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 2201991440, 0x0, 418435064) start.
17-03-17 22:50:42.578 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36558 846
17-03-17 22:50:42.728 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning grn on 996
17-03-17 22:50:42.768 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2166569176, 0x0, 391868352) end. Duration was 375 ms.
17-03-17 22:50:42.768 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-17 22:50:42.768 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:50:42.768 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 2201991440, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 22:50:42.768 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 22:50:42.768 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:50:42.768 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:50:42.768 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 22:50:42.888 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 120 ms.
17-03-17 22:50:42.898 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 507 ms.
17-03-17 22:50:42.948 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1218
17-03-17 22:50:42.948 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1218
17-03-17 22:50:42.948 -07 000000409 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:50:42.958 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1218
17-03-17 22:50:42.958 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1218
17-03-17 22:50:42.958 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:50:42.958 -07 000000409 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:50:42.958 -07 000000409 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 22:50:42.958 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:50:42.958 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 2162163872, 0x0, 418435064) start.
17-03-17 22:50:43.138 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP 1410
17-03-17 22:50:43.148 -07 000000415 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:50:43.148 -07 000000610 INF: FPGA: 'CAMDBLSNAP 461 461 222 222 36558 150' command took 2 ms to send, 1410 ms to get response, and 1417 ms overall
17-03-17 22:50:43.148 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 22:50:43.148 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.17578125, Z-Position -0.166558406795389. ------
17-03-17 22:50:43.148 -07 000000478 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:50:43.148 -07 000000593 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.17294 mm
17-03-17 22:50:43.148 -07 000000593 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:50:43.148 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:50:43.158 -07 000000478 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 22:50:43.158 -07 000000501 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-17 22:50:43.158 -07 000000501 INF: Y Motor: Moving to 74.0226 mm, started at 73.1758 mm, delta = 0.8468 mm
17-03-17 22:50:43.158 -07 000000478 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:50:43.158 -07 000000551 INF: Z Motor: Entering MoveAbsStepped (DAC = 37780, sync = True, waitForSettling = False)
17-03-17 22:50:43.158 -07 000000551 INF: Z Motor: Moving to -0.172946 mm, started at -0.166558 mm, distance = -6.39 um
17-03-17 22:50:43.168 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:50:43.168 -07 000000502 INF: FPGA: Recv YRDPOS 149864
17-03-17 22:50:43.178 -07 000000551 INF: FPGA: Xmit ZDACW 37780\n [Z Motor]
17-03-17 22:50:43.178 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-17 22:50:43.178 -07 000000501 INF: Y Motor: Encoder = 149864 = motor step 117081.3 = 73.1758 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:50:43.178 -07 000000501 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:50:43.178 -07 000000501 INF: Y Motor: Moving 1355 steps-35
17-03-17 22:50:43.178 -07 000000623 INF: FPGA: Recv ZDACW
17-03-17 22:50:43.188 -07 000000551 INF: FPGA: 'ZDACW 37780' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-17 22:50:43.188 -07 000000551 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:50:43.188 -07 000000486 INF: FPGA: Recv ZDACR 37780
17-03-17 22:50:43.198 -07 000000501 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:50:43.198 -07 000000551 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:43.198 -07 000000551 INF: Z Motor: MoveAbsStepped took 37 ms (did NOT wait for settling yet))
17-03-17 22:50:43.348 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 2162163872, 0x0, 418435064) end. Duration was 380 ms.
17-03-17 22:50:43.348 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-17 22:50:43.348 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:50:43.348 -07 000000409 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 383 ms.
17-03-17 22:50:43.348 -07 000000409 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 22:50:43.348 -07 000000409 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:50:43.348 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:50:43.348 -07 000000409 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:50:43.348 -07 000000409 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 22:50:43.358 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 22:50:43.358 -07 000000576 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:50:43.358 -07 000000478 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 203 ms overall
17-03-17 22:50:43.568 -07 000000409 INF: FPGA: Recv YMVTILE
17-03-17 22:50:43.568 -07 000000501 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 22:50:43.608 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:50:43.608 -07 000000618 INF: FPGA: Recv YRDPOS 151567
17-03-17 22:50:43.618 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:50:43.618 -07 000000501 INF: Y Motor: Encoder = 151567 = motor step 118411.7 = 74.0073 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:50:43.618 -07 000000501 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-17 22:50:43.618 -07 000000501 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.847 mm, average velocity = 2.133 mm/sec
17-03-17 22:50:43.738 -07 000000551 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 68, FrontChillerTemperature: 3.975845,
17-03-17 22:50:44.568 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:50:44.568 -07 000000627 INF: FPGA: Recv YRDPOS 151568
17-03-17 22:50:44.578 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:50:44.578 -07 000000501 INF: Y Motor: Encoder = 151568 = motor step 118412.5 = 74.0078 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:50:44.588 -07 000000501 INF: Y Motor: After move to 74.022606, error = -0.014793, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:50:44.588 -07 000000501 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 22:50:44.588 -07 000000501 INF: Y Motor: Moved to 74.0078 after 1437 ms (table move)
17-03-17 22:50:44.598 -07 000000593 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172946 mm (DAC = 37780)
17-03-17 22:50:44.598 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:44.598 -07 000000623 INF: FPGA: Recv ZSGSRD 36218
17-03-17 22:50:44.608 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:50:44.608 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:44.608 -07 000000627 INF: FPGA: Recv ZSGSRD 36207
17-03-17 22:50:44.618 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:44.618 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:44.618 -07 000000547 INF: FPGA: Recv ZSGSRD 36220
17-03-17 22:50:44.628 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:44.628 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:44.628 -07 000000501 INF: FPGA: Recv ZSGSRD 36219
17-03-17 22:50:44.638 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:44.638 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:44.638 -07 000000448 INF: FPGA: Recv ZSGSRD 36212
17-03-17 22:50:44.648 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:44.648 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:44.648 -07 000000627 INF: FPGA: Recv ZSGSRD 36211
17-03-17 22:50:44.658 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:44.658 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:44.658 -07 000000486 INF: FPGA: Recv ZSGSRD 36211
17-03-17 22:50:44.668 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:44.668 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:44.668 -07 000000576 INF: FPGA: Recv ZSGSRD 36211
17-03-17 22:50:44.678 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:44.678 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:44.678 -07 000000448 INF: FPGA: Recv ZSGSRD 36209
17-03-17 22:50:44.688 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:44.688 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:44.688 -07 000000501 INF: FPGA: Recv ZSGSRD 36212
17-03-17 22:50:44.698 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:44.698 -07 000000593 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:50:44.698 -07 000000382 INF: FPGA: Recv ZPIEZORD 32404
17-03-17 22:50:44.708 -07 000000593 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:44.708 -07 000000593 INF: Z Motor: Piezo is near 49.2 V (nominally 0 to 100 V), expect near 57.6 V, since DAC is at 5.765 V. Piezo Error = -8.4 V.
17-03-17 22:50:44.708 -07 000000593 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.9 um, Read 10 ADC samples: Avg = 36213 (-172.1 uncal um), Error = 0.9 uncal um, Median = 36212 (-172.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36207 (-172.0 uncal um), Max = 36220 (-172.1 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 22:50:44.708 -07 000000593 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36213, posNoise = 7, negNoise = 6
17-03-17 22:50:44.708 -07 000000593 INF: Z Motor: After move to -0.172946, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:50:44.708 -07 000000593 INF: Z Motor: Settle wait time = 1440 ms, measure time = 108 ms (allowed 150 ms), total time = 1548 ms
17-03-17 22:50:44.708 -07 000000593 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-17 22:50:44.758 -07 000000593 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1604 ms
17-03-17 22:50:44.758 -07 000000593 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:50:44.758 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:50:44.758 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:50:44.758 -07 000000482 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:50:44.758 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:50:44.758 -07 000000623 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:50:44.758 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:50:44.758 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:50:44.758 -07 000000623 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:50:44.768 -07 000000623 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 22:50:44.768 -07 000000623 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:50:44.778 -07 000000623 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 22:50:44.778 -07 000000623 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-17 22:50:44.778 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:50:44.828 -07 000000482 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:50:45.028 -07 000000462 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:50:45.028 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:50:45.028 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:50:45.028 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2147487792, 0x0, 559484976) start.
17-03-17 22:50:45.068 -07 000000482 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:50:45.068 -07 000000478 INF: FPGA: Recv CAMSNAP
17-03-17 22:50:45.068 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 287 ms overall
17-03-17 22:50:45.158 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2147487792, 0x0, 559484976) end. Duration was 125 ms.
17-03-17 22:50:45.158 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:50:45.158 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:50:45.158 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-17 22:50:45.168 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:50:45.168 -07 000000409 INF: Autofocus start
17-03-17 22:50:45.168 -07 000000409 INF: MeasureProfile start
17-03-17 22:50:45.168 -07 000000415 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:50:45.178 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:50:45.178 -07 000000501 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:50:45.178 -07 000000409 INF: MeasureProfile done
17-03-17 22:50:45.178 -07 000000409 INF: X=16  Z correction [um]=0.01042744
17-03-17 22:50:45.178 -07 000000409 INF: Autofocus finished
17-03-17 22:50:45.378 -07 000000627 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:50:45.378 -07 000000501 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:50:45.378 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.0078125, Z-position -0.172963346300724. ----------
17-03-17 22:50:45.378 -07 000000610 INF: Cycle	68	Tile	18	Exposure Settings		A	461	G	222	T	222	C	461
17-03-17 22:50:45.388 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36295, sync = True, waitForSettling = True)
17-03-17 22:50:45.388 -07 000000610 INF: Z Motor: Moving to -0.166148 mm, started at -0.172963 mm, distance = 6.82 um
17-03-17 22:50:45.388 -07 000000610 INF: FPGA: Xmit ZDACW 36295\n [Z Motor]
17-03-17 22:50:45.388 -07 000000547 INF: FPGA: Recv ZDACW
17-03-17 22:50:45.398 -07 000000610 INF: FPGA: 'ZDACW 36295' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:50:45.398 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:50:45.398 -07 000000576 INF: FPGA: Recv ZDACR 36295
17-03-17 22:50:45.408 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:45.408 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:50:45.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:45.558 -07 000000627 INF: FPGA: Recv ZSGSRD 35160
17-03-17 22:50:45.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:50:45.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:45.568 -07 000000623 INF: FPGA: Recv ZSGSRD 35157
17-03-17 22:50:45.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:45.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:45.578 -07 000000502 INF: FPGA: Recv ZSGSRD 35155
17-03-17 22:50:45.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:45.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:45.588 -07 000000382 INF: FPGA: Recv ZSGSRD 35154
17-03-17 22:50:45.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:45.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:45.598 -07 000000409 INF: FPGA: Recv ZSGSRD 35153
17-03-17 22:50:45.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:45.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:45.608 -07 000000593 INF: FPGA: Recv ZSGSRD 35158
17-03-17 22:50:45.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:45.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:45.618 -07 000000623 INF: FPGA: Recv ZSGSRD 35152
17-03-17 22:50:45.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:45.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:45.628 -07 000000541 INF: FPGA: Recv ZSGSRD 35149
17-03-17 22:50:45.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:45.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:45.638 -07 000000547 INF: FPGA: Recv ZSGSRD 35156
17-03-17 22:50:45.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:45.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:45.648 -07 000000576 INF: FPGA: Recv ZSGSRD 35159
17-03-17 22:50:45.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:45.658 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:50:45.658 -07 000000415 INF: FPGA: Recv ZPIEZORD 31014
17-03-17 22:50:45.668 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:45.668 -07 000000610 INF: Z Motor: Piezo is near 46.3 V (nominally 0 to 100 V), expect near 55.4 V, since DAC is at 5.538 V. Piezo Error = -9.1 V.
17-03-17 22:50:45.668 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.1 um, Read 10 ADC samples: Avg = 35155 (-165.3 uncal um), Error = 0.8 uncal um, Median = 35156 (-165.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35149 (-165.3 uncal um), Max = 35160 (-165.3 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 22:50:45.668 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35155, posNoise = 5, negNoise = 6
17-03-17 22:50:45.668 -07 000000610 INF: Z Motor: After move to -0.166148, error = -0.000019, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:50:45.668 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 22:50:45.668 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:50:45.668 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:50:45.668 -07 000000448 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:50:45.668 -07 000000551 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:50:45.668 -07 000000547 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:50:45.668 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:50:45.668 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:50:45.668 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:50:45.668 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 22:50:45.668 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:50:45.668 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 22:50:45.668 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:50:45.678 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 22:50:45.678 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:50:45.678 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:50:45.678 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:50:45.678 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 22:50:45.678 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 22:50:45.688 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 22:50:45.688 -07 000000547 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 22:50:45.688 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 461 461 222 222 36471 150\n [Camera]
17-03-17 22:50:45.888 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:50:46.348 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 653
17-03-17 22:50:46.348 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 653
17-03-17 22:50:46.348 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:50:46.348 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 653
17-03-17 22:50:46.348 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 653
17-03-17 22:50:46.348 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:50:46.348 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:50:46.358 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 656674232, 0x0, 418435064) start.
17-03-17 22:50:46.358 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:50:46.358 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-17 22:50:46.538 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36471 846
17-03-17 22:50:46.688 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning grn on 996
17-03-17 22:50:46.738 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 656674232, 0x0, 418435064) end. Duration was 380 ms.
17-03-17 22:50:46.738 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-17 22:50:46.738 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:50:46.738 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 22:50:46.738 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 22:50:46.738 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:50:46.738 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:50:46.738 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:50:46.738 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 22:50:46.748 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 22:50:46.908 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1218
17-03-17 22:50:46.908 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1218
17-03-17 22:50:46.908 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:50:46.908 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:50:46.908 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2334002848, 0x0, 391868352) start.
17-03-17 22:50:46.918 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1218
17-03-17 22:50:46.918 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1218
17-03-17 22:50:46.918 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:50:46.918 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:50:46.918 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-17 22:50:47.008 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:50:47.008 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 67. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1078, R2=1105, Total=2183. Warn if over 250 bubbles per interval.
17-03-17 22:50:47.098 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP 1410
17-03-17 22:50:47.108 -07 000000448 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:50:47.108 -07 000000610 INF: FPGA: 'CAMDBLSNAP 461 461 222 222 36471 150' command took 2 ms to send, 1410 ms to get response, and 1418 ms overall
17-03-17 22:50:47.108 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 22:50:47.108 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.0078125, Z-Position -0.166166529854741. ------
17-03-17 22:50:47.108 -07 000000541 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.17267 mm
17-03-17 22:50:47.108 -07 000000541 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:50:47.108 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:50:47.108 -07 000000623 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:50:47.118 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 2 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 22:50:47.118 -07 000000502 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:50:47.118 -07 000000593 INF: Z Motor: Entering MoveAbsStepped (DAC = 37720, sync = True, waitForSettling = False)
17-03-17 22:50:47.118 -07 000000593 INF: Z Motor: Moving to -0.172671 mm, started at -0.166167 mm, distance = -6.50 um
17-03-17 22:50:47.118 -07 000000448 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-17 22:50:47.118 -07 000000448 INF: Y Motor: Moving to 74.8526 mm, started at 74.0078 mm, delta = 0.8448 mm
17-03-17 22:50:47.128 -07 000000448 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:50:47.128 -07 000000409 INF: FPGA: Recv YRDPOS 151568
17-03-17 22:50:47.138 -07 000000593 INF: FPGA: Xmit ZDACW 37720\n [Z Motor]
17-03-17 22:50:47.138 -07 000000448 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-17 22:50:47.138 -07 000000448 INF: Y Motor: Encoder = 151568 = motor step 118412.5 = 74.0078 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:50:47.138 -07 000000448 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:50:47.138 -07 000000448 INF: Y Motor: Moving 1352 steps-31
17-03-17 22:50:47.138 -07 000000618 INF: FPGA: Recv ZDACW
17-03-17 22:50:47.148 -07 000000593 INF: FPGA: 'ZDACW 37720' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-17 22:50:47.148 -07 000000593 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:50:47.148 -07 000000547 INF: FPGA: Recv ZDACR 37720
17-03-17 22:50:47.158 -07 000000593 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:47.158 -07 000000593 INF: Z Motor: MoveAbsStepped took 38 ms (did NOT wait for settling yet))
17-03-17 22:50:47.158 -07 000000448 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:50:47.298 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 383 ms.
17-03-17 22:50:47.298 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-17 22:50:47.298 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:50:47.298 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2334002848, 0x0, 391868352) end. Duration was 387 ms.
17-03-17 22:50:47.298 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 22:50:47.298 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:50:47.308 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 22:50:47.308 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 10 ms.
17-03-17 22:50:47.308 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 22:50:47.308 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 22:50:47.318 -07 000000627 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:50:47.318 -07 000000502 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:50:47.528 -07 000000502 INF: FPGA: Recv YMVTILE
17-03-17 22:50:47.528 -07 000000448 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 22:50:47.558 -07 000000448 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:50:47.558 -07 000000502 INF: FPGA: Recv YRDPOS 153255
17-03-17 22:50:47.568 -07 000000448 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:50:47.568 -07 000000448 INF: Y Motor: Encoder = 153255 = motor step 119730.5 = 74.8315 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:50:47.568 -07 000000448 INF: Y Motor: Position error before settling (table move) = -43 encoder counts (-0.021 mm)
17-03-17 22:50:47.568 -07 000000448 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.845 mm, average velocity = 2.123 mm/sec
17-03-17 22:50:48.518 -07 000000448 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:50:48.518 -07 000000462 INF: FPGA: Recv YRDPOS 153255
17-03-17 22:50:48.528 -07 000000448 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:48.528 -07 000000448 INF: Y Motor: Encoder = 153255 = motor step 119730.5 = 74.8315 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:50:48.538 -07 000000448 INF: Y Motor: After move to 74.852608, error = -0.021065, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:50:48.538 -07 000000448 INF: Y Motor: Position error after settling (table move) = -43 encoder counts (-0.021 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:50:48.538 -07 000000448 INF: Y Motor: Moved to 74.8315 after 1425 ms (table move)
17-03-17 22:50:48.548 -07 000000541 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172671 mm (DAC = 37720)
17-03-17 22:50:48.548 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:48.548 -07 000000551 INF: FPGA: Recv ZSGSRD 36179
17-03-17 22:50:48.558 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:48.558 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:48.558 -07 000000593 INF: FPGA: Recv ZSGSRD 36168
17-03-17 22:50:48.568 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:48.568 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:48.568 -07 000000478 INF: FPGA: Recv ZSGSRD 36160
17-03-17 22:50:48.578 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:48.578 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:48.578 -07 000000576 INF: FPGA: Recv ZSGSRD 36174
17-03-17 22:50:48.588 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:48.588 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:48.588 -07 000000448 INF: FPGA: Recv ZSGSRD 36173
17-03-17 22:50:48.598 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:48.598 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:48.598 -07 000000623 INF: FPGA: Recv ZSGSRD 36177
17-03-17 22:50:48.608 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:48.608 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:48.608 -07 000000409 INF: FPGA: Recv ZSGSRD 36173
17-03-17 22:50:48.618 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:48.618 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:48.618 -07 000000547 INF: FPGA: Recv ZSGSRD 36165
17-03-17 22:50:48.628 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:48.628 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:48.628 -07 000000502 INF: FPGA: Recv ZSGSRD 36167
17-03-17 22:50:48.638 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:48.638 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:48.638 -07 000000482 INF: FPGA: Recv ZSGSRD 36166
17-03-17 22:50:48.648 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:48.648 -07 000000541 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:50:48.648 -07 000000448 INF: FPGA: Recv ZPIEZORD 32382
17-03-17 22:50:48.658 -07 000000541 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:48.658 -07 000000541 INF: Z Motor: Piezo is near 49.2 V (nominally 0 to 100 V), expect near 57.6 V, since DAC is at 5.756 V. Piezo Error = -8.4 V.
17-03-17 22:50:48.658 -07 000000541 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.7 um, Read 10 ADC samples: Avg = 36170 (-171.8 uncal um), Error = 0.9 uncal um, Median = 36170 (-171.8 uncal um), StdDev = 6 (0.0 uncal um), Range = 19 (0.1 uncal um), Min = 36160 (-171.7 uncal um), Max = 36179 (-171.9 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-17 22:50:48.658 -07 000000541 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36170, posNoise = 9, negNoise = 10
17-03-17 22:50:48.658 -07 000000541 INF: Z Motor: After move to -0.172671, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:50:48.658 -07 000000541 INF: Z Motor: Settle wait time = 1429 ms, measure time = 110 ms (allowed 150 ms), total time = 1539 ms
17-03-17 22:50:48.658 -07 000000541 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-17 22:50:48.698 -07 000000541 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1584 ms
17-03-17 22:50:48.698 -07 000000541 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:50:48.698 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:50:48.698 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:50:48.698 -07 000000623 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:50:48.698 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:50:48.698 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:50:48.698 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:50:48.708 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 22:50:48.708 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:50:48.708 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:50:48.708 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:50:48.718 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 22:50:48.718 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 22:50:48.718 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:50:48.768 -07 000000415 INF: FPGA: Recv @CAMSNAP turning led on 43
17-03-17 22:50:48.968 -07 000000448 INF: FPGA: Recv @CAMSNAP img rdy 243
17-03-17 22:50:48.968 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 243
17-03-17 22:50:48.968 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:50:48.968 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2268957512, 0x0, 559484976) start.
17-03-17 22:50:48.998 -07 000000502 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:50:48.998 -07 000000486 INF: FPGA: Recv CAMSNAP
17-03-17 22:50:48.998 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 285 ms overall
17-03-17 22:50:49.078 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2268957512, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 22:50:49.078 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:50:49.088 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:50:49.088 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 22:50:49.098 -07 000000576 INF: Autofocus start
17-03-17 22:50:49.098 -07 000000576 INF: MeasureProfile start
17-03-17 22:50:49.108 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 68, FrontChillerTemperature: 3.977204,
17-03-17 22:50:49.108 -07 000000576 INF: MeasureProfile done
17-03-17 22:50:49.108 -07 000000576 INF: X=-16  Z correction [um]=-0.1496812
17-03-17 22:50:49.108 -07 000000576 INF: Autofocus finished
17-03-17 22:50:49.118 -07 000000448 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:50:49.118 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:50:49.128 -07 000000448 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-17 22:50:49.148 -07 000000448 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:50:49.348 -07 000000593 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:50:49.348 -07 000000448 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 22:50:49.348 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83154296875, Z-position -0.172687105178629. ----------
17-03-17 22:50:49.348 -07 000000610 INF: Cycle	68	Tile	19	Exposure Settings		A	461	G	222	T	222	C	461
17-03-17 22:50:49.348 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36200, sync = True, waitForSettling = True)
17-03-17 22:50:49.348 -07 000000610 INF: Z Motor: Moving to -0.165713 mm, started at -0.172687 mm, distance = 6.97 um
17-03-17 22:50:49.348 -07 000000610 INF: FPGA: Xmit ZDACW 36200\n [Z Motor]
17-03-17 22:50:49.358 -07 000000382 INF: FPGA: Recv ZDACW
17-03-17 22:50:49.368 -07 000000610 INF: FPGA: 'ZDACW 36200' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:50:49.368 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:50:49.368 -07 000000409 INF: FPGA: Recv ZDACR 36200
17-03-17 22:50:49.378 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:49.378 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:50:49.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:49.528 -07 000000501 INF: FPGA: Recv ZSGSRD 35086
17-03-17 22:50:49.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:49.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:49.538 -07 000000448 INF: FPGA: Recv ZSGSRD 35085
17-03-17 22:50:49.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:49.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:49.548 -07 000000541 INF: FPGA: Recv ZSGSRD 35088
17-03-17 22:50:49.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:49.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:49.558 -07 000000478 INF: FPGA: Recv ZSGSRD 35096
17-03-17 22:50:49.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:49.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:49.568 -07 000000502 INF: FPGA: Recv ZSGSRD 35084
17-03-17 22:50:49.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:49.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:49.578 -07 000000415 INF: FPGA: Recv ZSGSRD 35089
17-03-17 22:50:49.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:49.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:49.588 -07 000000486 INF: FPGA: Recv ZSGSRD 35088
17-03-17 22:50:49.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:49.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:49.598 -07 000000627 INF: FPGA: Recv ZSGSRD 35087
17-03-17 22:50:49.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:49.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:49.608 -07 000000623 INF: FPGA: Recv ZSGSRD 35086
17-03-17 22:50:49.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:49.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:49.618 -07 000000502 INF: FPGA: Recv ZSGSRD 35089
17-03-17 22:50:49.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:49.628 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:50:49.628 -07 000000576 INF: FPGA: Recv ZPIEZORD 30916
17-03-17 22:50:49.638 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:49.638 -07 000000610 INF: Z Motor: Piezo is near 46.0 V (nominally 0 to 100 V), expect near 55.2 V, since DAC is at 5.524 V. Piezo Error = -9.2 V.
17-03-17 22:50:49.638 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -165.7 um, Read 10 ADC samples: Avg = 35088 (-164.9 uncal um), Error = 0.8 uncal um, Median = 35088 (-164.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35084 (-164.8 uncal um), Max = 35096 (-164.9 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 22:50:49.638 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35088, posNoise = 8, negNoise = 4
17-03-17 22:50:49.638 -07 000000610 INF: Z Motor: After move to -0.165713, error = -0.000023, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:50:49.638 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 22:50:49.638 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:50:49.638 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:50:49.638 -07 000000448 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:50:49.638 -07 000000541 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:50:49.638 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:50:49.638 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:50:49.638 -07 000000551 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:50:49.638 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:50:49.638 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:50:49.638 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:50:49.638 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:50:49.638 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:50:49.638 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:50:49.638 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:50:49.648 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:50:49.648 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:50:49.648 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 22:50:49.648 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 22:50:49.658 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 22:50:49.658 -07 000000551 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 22:50:49.658 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 461 461 222 222 36376 150\n [Camera]
17-03-17 22:50:49.858 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:50:50.318 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 653
17-03-17 22:50:50.318 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 653
17-03-17 22:50:50.318 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:50:50.318 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:50:50.318 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start.
17-03-17 22:50:50.318 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 653
17-03-17 22:50:50.318 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 653
17-03-17 22:50:50.328 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:50:50.448 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:50:50.448 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-17 22:50:50.508 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36376 846
17-03-17 22:50:50.668 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP turning grn on 996
17-03-17 22:50:50.718 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 391 ms.
17-03-17 22:50:50.718 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 22:50:50.718 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:50:50.718 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:50:50.718 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 22:50:50.838 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 389 ms.
17-03-17 22:50:50.838 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 22:50:50.838 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:50:50.838 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:50:50.838 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 519 ms.
17-03-17 22:50:50.888 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1218
17-03-17 22:50:50.888 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1218
17-03-17 22:50:50.888 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:50:50.888 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1218
17-03-17 22:50:50.888 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1218
17-03-17 22:50:50.888 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:50:50.898 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:50:50.898 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 22:50:50.898 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:50:50.898 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 22:50:51.078 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP 1411
17-03-17 22:50:51.078 -07 000000593 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:50:51.078 -07 000000610 INF: FPGA: 'CAMDBLSNAP 461 461 222 222 36376 150' command took 2 ms to send, 1413 ms to get response, and 1420 ms overall
17-03-17 22:50:51.298 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 400 ms.
17-03-17 22:50:51.298 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 22:50:51.298 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:50:51.298 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 402 ms.
17-03-17 22:50:51.298 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 22:50:51.298 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:50:51.298 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:50:51.298 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:50:51.298 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 415 ms.
17-03-17 22:50:51.298 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-17 22:50:51.308 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 418 ms.
17-03-17 22:50:51.348 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 42 ms.
17-03-17 22:50:51.348 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-17 22:50:51.388 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 42 ms.
17-03-17 22:50:51.388 -07 000000610 INF: Move compensator for Bottom-surface imaging.
17-03-17 22:50:51.388 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-17 22:50:51.388 -07 000000486 INF: FPGA: Recv EMCUR 
17-03-17 22:50:51.398 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:50:51.398 -07 000000610 INF: FPGA: Xmit EMIN 20 40\n [Compensator]
17-03-17 22:50:51.898 -07 000000547 INF: FPGA: Recv EMIN
17-03-17 22:50:51.898 -07 000000610 INF: FPGA: 'EMIN 20 40' command took 0 ms to send, 493 ms to get response, and 502 ms overall
17-03-17 22:50:51.898 -07 000000610 INF: FPGA: Xmit EMCUR 60\n [Compensator]
17-03-17 22:50:51.898 -07 000000541 INF: FPGA: Recv EMCUR 
17-03-17 22:50:51.908 -07 000000610 INF: FPGA: 'EMCUR 60' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:50:51.908 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 22:50:51.908 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 74.83154296875, Z-Position -0.165736107641243. ------
17-03-17 22:50:51.908 -07 000000409 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:50:51.908 -07 000000618 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.14032 mm
17-03-17 22:50:51.908 -07 000000618 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:50:51.908 -07 000000502 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-17 22:50:51.908 -07 000000502 INF: Y Motor: Moving to 59.9126 mm, started at 74.8315 mm, delta = -14.9189 mm
17-03-17 22:50:51.908 -07 000000623 INF: Z Motor: Entering MoveAbsStepped (DAC = 30653, sync = True, waitForSettling = False)
17-03-17 22:50:51.908 -07 000000486 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:50:51.908 -07 000000623 INF: Z Motor: Moving to -0.140320 mm, started at -0.165736 mm, distance = 25.42 um
17-03-17 22:50:51.918 -07 000000409 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 22:50:51.918 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:50:51.918 -07 000000551 INF: FPGA: Recv YRDPOS 153257
17-03-17 22:50:51.928 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 22:50:51.928 -07 000000502 INF: Y Motor: Encoder = 153257 = motor step 119732.0 = 74.8325 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:50:51.928 -07 000000623 INF: FPGA: Xmit ZDACW 30653\n [Z Motor]
17-03-17 22:50:51.928 -07 000000382 INF: FPGA: Recv ZDACW
17-03-17 22:50:51.928 -07 000000502 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = -14.9400 mm (-23904.0 steps). UsingTableMove = False
17-03-17 22:50:51.928 -07 000000502 INF: Y Motor: Moving to 122701 encoder counts
17-03-17 22:50:51.938 -07 000000409 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:50:51.938 -07 000000623 INF: FPGA: 'ZDACW 30653' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-17 22:50:51.948 -07 000000502 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-17 22:50:51.958 -07 000000623 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:50:51.958 -07 000000478 INF: FPGA: Recv ZDACR 30653
17-03-17 22:50:51.968 -07 000000623 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:50:51.968 -07 000000623 INF: Z Motor: MoveAbsStepped took 52 ms (did NOT wait for settling yet))
17-03-17 22:50:52.008 -07 000000623 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:50:52.008 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 67. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1078, R2=1105, Total=2183. Warn if over 250 bubbles per interval.
17-03-17 22:50:52.138 -07 000000541 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:50:52.138 -07 000000409 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 22:50:53.578 -07 000000478 INF: FPGA: Recv YMVTO 122703 23903
17-03-17 22:50:53.578 -07 000000502 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1619 ms to get response, and 1642 ms overall
17-03-17 22:50:53.578 -07 000000502 INF: Y Motor: Position error before settling = 2 encoder counts (0.001 mm)
17-03-17 22:50:53.578 -07 000000502 INF: Y Motor: To move from 74.833 to 59.913 (-14.919 mm) should take 23872 steps, but required 23903 steps (14.939 mm). Slippage = 0.019 mm (0.00%).
17-03-17 22:50:53.578 -07 000000502 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1643 ms, distance = 14.919 mm, average velocity = 9.080 mm/sec
17-03-17 22:50:54.498 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 68, FrontChillerTemperature: 4.0344,
17-03-17 22:50:56.428 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:50:56.428 -07 000000462 INF: FPGA: Recv YRDPOS 122698
17-03-17 22:50:56.438 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:50:56.438 -07 000000502 INF: Y Motor: Encoder = 122698 = motor step 95857.8 = 59.9111 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:50:56.468 -07 000000502 INF: Y Motor: After move to 59.912609, error = -0.001476, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:50:56.468 -07 000000502 INF: Y Motor: Position error after settling = -3 encoder counts (-0.001 mm), Delta during settling = -5 counts (-0.002 mm)
17-03-17 22:50:56.468 -07 000000502 INF: Y Motor: Moved to 59.9111 after 4554 ms
17-03-17 22:50:56.468 -07 000000618 INF: Z Motor: EndOfMoveAbsStepped: target = -0.140320 mm (DAC = 30653)
17-03-17 22:50:56.468 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:56.478 -07 000000593 INF: FPGA: Recv ZSGSRD 31125
17-03-17 22:50:56.478 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 22:50:56.478 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:56.478 -07 000000482 INF: FPGA: Recv ZSGSRD 31134
17-03-17 22:50:56.488 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:56.488 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:56.488 -07 000000409 INF: FPGA: Recv ZSGSRD 31134
17-03-17 22:50:56.498 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:56.498 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:56.498 -07 000000551 INF: FPGA: Recv ZSGSRD 31132
17-03-17 22:50:56.508 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:56.508 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:56.508 -07 000000576 INF: FPGA: Recv ZSGSRD 31132
17-03-17 22:50:56.518 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:56.518 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:56.518 -07 000000482 INF: FPGA: Recv ZSGSRD 31130
17-03-17 22:50:56.528 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:56.528 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:56.528 -07 000000448 INF: FPGA: Recv ZSGSRD 31133
17-03-17 22:50:56.538 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:56.538 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:56.538 -07 000000547 INF: FPGA: Recv ZSGSRD 31139
17-03-17 22:50:56.548 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:56.548 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:56.548 -07 000000478 INF: FPGA: Recv ZSGSRD 31132
17-03-17 22:50:56.558 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:56.558 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:56.558 -07 000000382 INF: FPGA: Recv ZSGSRD 31136
17-03-17 22:50:56.568 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:56.568 -07 000000618 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:50:56.568 -07 000000502 INF: FPGA: Recv ZPIEZORD 26732
17-03-17 22:50:56.578 -07 000000618 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:56.578 -07 000000618 INF: Z Motor: Piezo is near 37.1 V (nominally 0 to 100 V), expect near 46.8 V, since DAC is at 4.677 V. Piezo Error = -9.7 V.
17-03-17 22:50:56.578 -07 000000618 INF: Z Motor: ReadAdcAverage: Commanded Z = -140.3 um, Read 10 ADC samples: Avg = 31133 (-139.5 uncal um), Error = 0.8 uncal um, Median = 31132 (-139.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 31125 (-139.5 uncal um), Max = 31139 (-139.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 22:50:56.578 -07 000000618 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31133, posNoise = 6, negNoise = 8
17-03-17 22:50:56.578 -07 000000618 INF: Z Motor: After move to -0.140320, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:50:56.578 -07 000000618 INF: Z Motor: Settle wait time = 4556 ms, measure time = 106 ms (allowed 150 ms), total time = 4662 ms
17-03-17 22:50:56.578 -07 000000618 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 22:50:56.628 -07 000000618 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4714 ms
17-03-17 22:50:56.628 -07 000000618 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:50:56.628 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:50:56.628 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:50:56.628 -07 000000593 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:50:56.628 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:50:56.628 -07 000000623 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:50:56.628 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:50:56.638 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 22:50:56.638 -07 000000623 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-17 22:50:56.658 -07 000000623 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 19 ms.
17-03-17 22:50:56.658 -07 000000623 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:50:56.658 -07 000000623 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:50:56.658 -07 000000623 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:50:56.658 -07 000000623 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 22:50:56.658 -07 000000623 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 32 ms.
17-03-17 22:50:56.668 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:50:56.708 -07 000000486 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:50:56.908 -07 000000502 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:50:56.908 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:50:56.908 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:50:56.908 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610341080, 0x0, 559484976) start.
17-03-17 22:50:56.948 -07 000000478 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:50:56.948 -07 000000576 INF: FPGA: Recv CAMSNAP
17-03-17 22:50:56.948 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 285 ms overall
17-03-17 22:50:57.008 -07 000000478 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:50:57.028 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610341080, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 22:50:57.028 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:50:57.028 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:50:57.028 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 120 ms.
17-03-17 22:50:57.038 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 67. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1078, R2=1105, Total=2183. Warn if over 250 bubbles per interval.
17-03-17 22:50:57.048 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:50:57.048 -07 000000551 INF: Image SNR check: start
17-03-17 22:50:57.158 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:50:57.158 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 111 ms overall
17-03-17 22:50:57.158 -07 000000576 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:50:57.168 -07 000000551 INF: Image SNR check: pass  [peak (Max-Min)=54.50]
17-03-17 22:50:57.168 -07 000000551 INF: Autofocus start
17-03-17 22:50:57.168 -07 000000551 INF: MeasureProfile start
17-03-17 22:50:57.188 -07 000000551 INF: MeasureProfile done
17-03-17 22:50:57.188 -07 000000551 INF: X=-32  Z correction [um]=-0.1591732
17-03-17 22:50:57.188 -07 000000551 INF: Autofocus finished
17-03-17 22:50:57.358 -07 000000415 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:50:57.358 -07 000000576 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 198 ms to get response, and 202 ms overall
17-03-17 22:50:57.368 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.9111328125, Z-position -0.140328348620579. ----------
17-03-17 22:50:57.368 -07 000000610 INF: Cycle	68	Tile	1	Exposure Settings		A	461	G	222	T	222	C	461
17-03-17 22:50:57.368 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 29131, sync = True, waitForSettling = True)
17-03-17 22:50:57.368 -07 000000610 INF: Z Motor: Moving to -0.133353 mm, started at -0.140328 mm, distance = 6.98 um
17-03-17 22:50:57.368 -07 000000610 INF: FPGA: Xmit ZDACW 29131\n [Z Motor]
17-03-17 22:50:57.378 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 22:50:57.378 -07 000000610 INF: FPGA: 'ZDACW 29131' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 22:50:57.378 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:50:57.378 -07 000000618 INF: FPGA: Recv ZDACR 29131
17-03-17 22:50:57.388 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:57.388 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:50:57.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:57.538 -07 000000448 INF: FPGA: Recv ZSGSRD 30048
17-03-17 22:50:57.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:50:57.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:57.548 -07 000000593 INF: FPGA: Recv ZSGSRD 30046
17-03-17 22:50:57.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:57.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:57.558 -07 000000502 INF: FPGA: Recv ZSGSRD 30046
17-03-17 22:50:57.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:57.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:57.568 -07 000000501 INF: FPGA: Recv ZSGSRD 30047
17-03-17 22:50:57.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:57.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:57.578 -07 000000618 INF: FPGA: Recv ZSGSRD 30046
17-03-17 22:50:57.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:57.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:57.588 -07 000000448 INF: FPGA: Recv ZSGSRD 30045
17-03-17 22:50:57.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:57.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:57.598 -07 000000551 INF: FPGA: Recv ZSGSRD 30049
17-03-17 22:50:57.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:57.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:57.608 -07 000000502 INF: FPGA: Recv ZSGSRD 30051
17-03-17 22:50:57.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:57.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:57.618 -07 000000501 INF: FPGA: Recv ZSGSRD 30043
17-03-17 22:50:57.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:57.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:50:57.628 -07 000000618 INF: FPGA: Recv ZSGSRD 30049
17-03-17 22:50:57.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:57.638 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:50:57.638 -07 000000415 INF: FPGA: Recv ZPIEZORD 25561
17-03-17 22:50:57.648 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:57.648 -07 000000610 INF: Z Motor: Piezo is near 34.6 V (nominally 0 to 100 V), expect near 44.5 V, since DAC is at 4.445 V. Piezo Error = -9.8 V.
17-03-17 22:50:57.648 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.4 um, Read 10 ADC samples: Avg = 30047 (-132.6 uncal um), Error = 0.8 uncal um, Median = 30046 (-132.6 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 30043 (-132.5 uncal um), Max = 30051 (-132.6 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 22:50:57.648 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30047, posNoise = 4, negNoise = 4
17-03-17 22:50:57.648 -07 000000610 INF: Z Motor: After move to -0.133353, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:50:57.648 -07 000000610 INF: Z Motor: MoveAbsStepped took 273 ms)
17-03-17 22:50:57.648 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:50:57.648 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:50:57.648 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:50:57.648 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:50:57.648 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:50:57.648 -07 000000486 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:50:57.648 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:50:57.648 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:50:57.648 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:50:57.648 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:50:57.648 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:50:57.648 -07 000000486 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-17 22:50:57.658 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:50:57.658 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:50:57.658 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 22:50:57.668 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 22:50:57.668 -07 000000486 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 20 ms.
17-03-17 22:50:57.668 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:50:57.678 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 22:50:57.678 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:50:57.678 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 22:50:57.688 -07 000000486 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 32 ms.
17-03-17 22:50:57.688 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 461 461 222 222 29307 150\n [Camera]
17-03-17 22:50:57.888 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:50:58.348 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 653
17-03-17 22:50:58.348 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 653
17-03-17 22:50:58.348 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:50:58.348 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 653
17-03-17 22:50:58.348 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 653
17-03-17 22:50:58.348 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:50:58.358 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 579324120, 0x0, 391868352) start.
17-03-17 22:50:58.358 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:50:58.358 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:50:58.358 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 22:50:58.538 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29307 846
17-03-17 22:50:58.688 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning grn on 996
17-03-17 22:50:58.728 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 371 ms.
17-03-17 22:50:58.728 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-17 22:50:58.728 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:50:58.728 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 579324120, 0x0, 391868352) end. Duration was 379 ms.
17-03-17 22:50:58.728 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-17 22:50:58.728 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:50:58.728 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:50:58.738 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:50:58.738 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 22:50:58.738 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 22:50:58.908 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1218
17-03-17 22:50:58.908 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1218
17-03-17 22:50:58.908 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:50:58.918 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1218
17-03-17 22:50:58.918 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1218
17-03-17 22:50:58.918 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:50:58.918 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:50:58.918 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-17 22:50:58.918 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:50:58.918 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 22:50:59.098 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP 1411
17-03-17 22:50:59.108 -07 000000618 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:50:59.108 -07 000000610 INF: FPGA: 'CAMDBLSNAP 461 461 222 222 29307 150' command took 2 ms to send, 1410 ms to get response, and 1417 ms overall
17-03-17 22:50:59.108 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 22:50:59.108 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.9111328125, Z-Position -0.133351654234626. ------
17-03-17 22:50:59.108 -07 000000547 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:50:59.108 -07 000000593 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.13952 mm
17-03-17 22:50:59.108 -07 000000593 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:50:59.108 -07 000000623 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:50:59.118 -07 000000547 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 22:50:59.118 -07 000000627 INF: Z Motor: Entering MoveAbsStepped (DAC = 30478, sync = True, waitForSettling = False)
17-03-17 22:50:59.118 -07 000000627 INF: Z Motor: Moving to -0.139519 mm, started at -0.133352 mm, distance = -6.17 um
17-03-17 22:50:59.118 -07 000000547 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:50:59.118 -07 000000462 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-17 22:50:59.118 -07 000000462 INF: Y Motor: Moving to 60.7426 mm, started at 59.9111 mm, delta = 0.8315 mm
17-03-17 22:50:59.128 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:50:59.128 -07 000000448 INF: FPGA: Recv YRDPOS 122698
17-03-17 22:50:59.138 -07 000000627 INF: FPGA: Xmit ZDACW 30478\n [Z Motor]
17-03-17 22:50:59.138 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:50:59.138 -07 000000462 INF: Y Motor: Encoder = 122698 = motor step 95857.8 = 59.9111 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:50:59.138 -07 000000462 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:50:59.138 -07 000000462 INF: Y Motor: Moving 1330 steps2
17-03-17 22:50:59.138 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 22:50:59.148 -07 000000627 INF: FPGA: 'ZDACW 30478' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:50:59.148 -07 000000627 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:50:59.148 -07 000000482 INF: FPGA: Recv ZDACR 30478
17-03-17 22:50:59.158 -07 000000462 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:50:59.158 -07 000000627 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:50:59.158 -07 000000627 INF: Z Motor: MoveAbsStepped took 39 ms (did NOT wait for settling yet))
17-03-17 22:50:59.318 -07 000000382 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:50:59.318 -07 000000547 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 203 ms overall
17-03-17 22:50:59.318 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 398 ms.
17-03-17 22:50:59.318 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 22:50:59.318 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 400 ms.
17-03-17 22:50:59.318 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:50:59.318 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 22:50:59.318 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:50:59.328 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 22:50:59.328 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:50:59.328 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 413 ms.
17-03-17 22:50:59.328 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-17 22:50:59.528 -07 000000541 INF: FPGA: Recv YMVTILE
17-03-17 22:50:59.528 -07 000000462 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 22:50:59.568 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:50:59.568 -07 000000623 INF: FPGA: Recv YRDPOS 124381
17-03-17 22:50:59.578 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:50:59.578 -07 000000462 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:50:59.578 -07 000000462 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-17 22:50:59.578 -07 000000462 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.831 mm, average velocity = 2.094 mm/sec
17-03-17 22:50:59.858 -07 000000448 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 68, FrontChillerTemperature: 4.020806,
17-03-17 22:51:00.528 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:51:00.528 -07 000000618 INF: FPGA: Recv YRDPOS 124381
17-03-17 22:51:00.538 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:51:00.538 -07 000000462 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:51:00.558 -07 000000462 INF: Y Motor: After move to 60.742607, error = -0.009697, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:51:00.558 -07 000000462 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:51:00.558 -07 000000462 INF: Y Motor: Moved to 60.7329 after 1445 ms (table move)
17-03-17 22:51:00.558 -07 000000593 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139519 mm (DAC = 30478)
17-03-17 22:51:00.558 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:00.568 -07 000000486 INF: FPGA: Recv ZSGSRD 31001
17-03-17 22:51:00.578 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:51:00.578 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:00.578 -07 000000618 INF: FPGA: Recv ZSGSRD 31008
17-03-17 22:51:00.588 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:00.588 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:00.588 -07 000000502 INF: FPGA: Recv ZSGSRD 31013
17-03-17 22:51:00.598 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:00.598 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:00.598 -07 000000501 INF: FPGA: Recv ZSGSRD 31018
17-03-17 22:51:00.608 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:00.608 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:00.608 -07 000000482 INF: FPGA: Recv ZSGSRD 31004
17-03-17 22:51:00.618 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:00.618 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:00.618 -07 000000541 INF: FPGA: Recv ZSGSRD 31004
17-03-17 22:51:00.628 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:00.628 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:00.628 -07 000000576 INF: FPGA: Recv ZSGSRD 31008
17-03-17 22:51:00.638 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:00.638 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:00.638 -07 000000478 INF: FPGA: Recv ZSGSRD 31005
17-03-17 22:51:00.648 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:00.648 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:00.648 -07 000000415 INF: FPGA: Recv ZSGSRD 31007
17-03-17 22:51:00.658 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:00.658 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:00.658 -07 000000547 INF: FPGA: Recv ZSGSRD 31008
17-03-17 22:51:00.668 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:00.668 -07 000000593 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:51:00.668 -07 000000482 INF: FPGA: Recv ZPIEZORD 26850
17-03-17 22:51:00.678 -07 000000593 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:00.678 -07 000000593 INF: Z Motor: Piezo is near 37.4 V (nominally 0 to 100 V), expect near 46.5 V, since DAC is at 4.651 V. Piezo Error = -9.1 V.
17-03-17 22:51:00.678 -07 000000593 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.5 um, Read 10 ADC samples: Avg = 31008 (-138.7 uncal um), Error = 0.8 uncal um, Median = 31008 (-138.7 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 31001 (-138.7 uncal um), Max = 31018 (-138.8 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 22:51:00.678 -07 000000593 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31008, posNoise = 10, negNoise = 7
17-03-17 22:51:00.678 -07 000000593 INF: Z Motor: After move to -0.139519, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:51:00.678 -07 000000593 INF: Z Motor: Settle wait time = 1449 ms, measure time = 111 ms (allowed 150 ms), total time = 1560 ms
17-03-17 22:51:00.678 -07 000000593 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-17 22:51:00.718 -07 000000593 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1604 ms
17-03-17 22:51:00.718 -07 000000593 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:51:00.718 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:51:00.718 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:51:00.718 -07 000000409 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:51:00.718 -07 000000547 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:51:00.718 -07 000000448 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:51:00.718 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:51:00.728 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:51:00.728 -07 000000448 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:51:00.728 -07 000000448 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:51:00.728 -07 000000448 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:51:00.738 -07 000000448 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 22:51:00.738 -07 000000448 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 22:51:00.738 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:51:00.788 -07 000000502 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:51:00.988 -07 000000618 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:51:00.988 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:51:00.988 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:51:01.088 -07 000000627 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:51:01.098 -07 000000627 INF: FPGA: Recv CAMSNAP
17-03-17 22:51:01.098 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2235207384, 0x0, 559484976) start.
17-03-17 22:51:01.098 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 350 ms to get response, and 352 ms overall
17-03-17 22:51:01.218 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2235207384, 0x0, 559484976) end. Duration was 128 ms.
17-03-17 22:51:01.218 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:51:01.218 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:51:01.218 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 236 ms.
17-03-17 22:51:01.298 -07 000000551 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:51:01.298 -07 000000576 INF: Autofocus start
17-03-17 22:51:01.298 -07 000000576 INF: MeasureProfile start
17-03-17 22:51:01.298 -07 000000541 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:51:01.308 -07 000000551 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:51:01.308 -07 000000551 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:51:01.308 -07 000000576 INF: MeasureProfile done
17-03-17 22:51:01.308 -07 000000576 INF: X=-3  Z correction [um]=-0.01800644
17-03-17 22:51:01.308 -07 000000576 INF: Autofocus finished
17-03-17 22:51:01.508 -07 000000618 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:51:01.508 -07 000000551 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 204 ms overall
17-03-17 22:51:01.508 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.73291015625, Z-position -0.139525322102859. ----------
17-03-17 22:51:01.518 -07 000000610 INF: Cycle	68	Tile	2	Exposure Settings		A	461	G	222	T	222	C	461
17-03-17 22:51:01.518 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28986, sync = True, waitForSettling = True)
17-03-17 22:51:01.518 -07 000000610 INF: Z Motor: Moving to -0.132689 mm, started at -0.139525 mm, distance = 6.84 um
17-03-17 22:51:01.518 -07 000000610 INF: FPGA: Xmit ZDACW 28986\n [Z Motor]
17-03-17 22:51:01.518 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 22:51:01.528 -07 000000610 INF: FPGA: 'ZDACW 28986' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:51:01.528 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:51:01.528 -07 000000551 INF: FPGA: Recv ZDACR 28986
17-03-17 22:51:01.538 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:01.538 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:51:01.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:01.688 -07 000000618 INF: FPGA: Recv ZSGSRD 29948
17-03-17 22:51:01.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:51:01.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:01.698 -07 000000576 INF: FPGA: Recv ZSGSRD 29946
17-03-17 22:51:01.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:01.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:01.708 -07 000000627 INF: FPGA: Recv ZSGSRD 29943
17-03-17 22:51:01.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:01.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:01.718 -07 000000478 INF: FPGA: Recv ZSGSRD 29939
17-03-17 22:51:01.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:01.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:01.728 -07 000000409 INF: FPGA: Recv ZSGSRD 29944
17-03-17 22:51:01.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:01.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:01.738 -07 000000618 INF: FPGA: Recv ZSGSRD 29945
17-03-17 22:51:01.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:01.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:01.748 -07 000000576 INF: FPGA: Recv ZSGSRD 29947
17-03-17 22:51:01.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:01.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:01.758 -07 000000448 INF: FPGA: Recv ZSGSRD 29944
17-03-17 22:51:01.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:01.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:01.768 -07 000000623 INF: FPGA: Recv ZSGSRD 29947
17-03-17 22:51:01.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:01.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:01.778 -07 000000478 INF: FPGA: Recv ZSGSRD 29944
17-03-17 22:51:01.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:01.788 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:51:01.788 -07 000000501 INF: FPGA: Recv ZPIEZORD 25492
17-03-17 22:51:01.798 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:01.798 -07 000000610 INF: Z Motor: Piezo is near 34.5 V (nominally 0 to 100 V), expect near 44.2 V, since DAC is at 4.423 V. Piezo Error = -9.8 V.
17-03-17 22:51:01.798 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.7 um, Read 10 ADC samples: Avg = 29945 (-131.9 uncal um), Error = 0.8 uncal um, Median = 29944 (-131.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29939 (-131.9 uncal um), Max = 29948 (-131.9 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 22:51:01.798 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29945, posNoise = 3, negNoise = 6
17-03-17 22:51:01.798 -07 000000610 INF: Z Motor: After move to -0.132689, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:51:01.798 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 22:51:01.798 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:51:01.798 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:51:01.798 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:51:01.798 -07 000000547 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:51:01.798 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:51:01.798 -07 000000415 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:51:01.798 -07 000000551 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:51:01.798 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:51:01.798 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:51:01.798 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:51:01.798 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:51:01.798 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:51:01.798 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:51:01.798 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:51:01.808 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:51:01.808 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:51:01.818 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 22:51:01.818 -07 000000547 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 22:51:01.818 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 22:51:01.818 -07 000000551 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 22:51:01.818 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 461 461 222 222 29163 150\n [Camera]
17-03-17 22:51:02.008 -07 000000448 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:51:02.008 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 67. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1078, R2=1105, Total=2183. Warn if over 250 bubbles per interval.
17-03-17 22:51:02.018 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:51:02.478 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 653
17-03-17 22:51:02.478 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 653
17-03-17 22:51:02.488 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:51:02.488 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 653
17-03-17 22:51:02.488 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 653
17-03-17 22:51:02.488 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:51:02.488 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:51:02.488 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 583729424, 0x0, 391868352) start.
17-03-17 22:51:02.488 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:51:02.488 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 22:51:02.678 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29163 847
17-03-17 22:51:02.828 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP turning grn on 996
17-03-17 22:51:02.878 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 583729424, 0x0, 391868352) end. Duration was 395 ms.
17-03-17 22:51:02.878 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 22:51:02.878 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:51:02.888 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:51:02.888 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 22:51:02.888 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 396 ms.
17-03-17 22:51:02.888 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 22:51:02.888 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:51:02.888 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:51:02.898 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-17 22:51:03.048 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1218
17-03-17 22:51:03.048 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1218
17-03-17 22:51:03.048 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:51:03.048 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1218
17-03-17 22:51:03.048 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1218
17-03-17 22:51:03.048 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:51:03.048 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:51:03.048 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-17 22:51:03.058 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:51:03.058 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 22:51:03.238 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP 1410
17-03-17 22:51:03.238 -07 000000551 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:51:03.238 -07 000000610 INF: FPGA: 'CAMDBLSNAP 461 461 222 222 29163 150' command took 4 ms to send, 1406 ms to get response, and 1417 ms overall
17-03-17 22:51:03.238 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 22:51:03.238 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.73291015625, Z-Position -0.132696384596167. ------
17-03-17 22:51:03.248 -07 000000478 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:51:03.248 -07 000000409 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.13932 mm
17-03-17 22:51:03.248 -07 000000409 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:51:03.248 -07 000000627 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:51:03.248 -07 000000486 INF: Z Motor: Entering MoveAbsStepped (DAC = 30435, sync = True, waitForSettling = False)
17-03-17 22:51:03.248 -07 000000486 INF: Z Motor: Moving to -0.139322 mm, started at -0.132696 mm, distance = -6.63 um
17-03-17 22:51:03.248 -07 000000551 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-17 22:51:03.248 -07 000000551 INF: Y Motor: Moving to 61.5726 mm, started at 60.7329 mm, delta = 0.8397 mm
17-03-17 22:51:03.258 -07 000000478 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:51:03.258 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:51:03.258 -07 000000547 INF: FPGA: Recv YRDPOS 124382
17-03-17 22:51:03.268 -07 000000486 INF: FPGA: Xmit ZDACW 30435\n [Z Motor]
17-03-17 22:51:03.268 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 22:51:03.268 -07 000000551 INF: Y Motor: Encoder = 124382 = motor step 97173.4 = 60.7334 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:51:03.268 -07 000000576 INF: FPGA: Recv ZDACW
17-03-17 22:51:03.268 -07 000000551 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:51:03.268 -07 000000551 INF: Y Motor: Moving 1343 steps-20
17-03-17 22:51:03.278 -07 000000478 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:51:03.278 -07 000000486 INF: FPGA: 'ZDACW 30435' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-17 22:51:03.288 -07 000000551 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:51:03.298 -07 000000486 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:51:03.298 -07 000000502 INF: FPGA: Recv ZDACR 30435
17-03-17 22:51:03.308 -07 000000486 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:51:03.308 -07 000000486 INF: Z Motor: MoveAbsStepped took 53 ms (did NOT wait for settling yet))
17-03-17 22:51:03.448 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 398 ms.
17-03-17 22:51:03.448 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 22:51:03.448 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:51:03.458 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 397 ms.
17-03-17 22:51:03.458 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 22:51:03.458 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:51:03.458 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:51:03.458 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 22:51:03.458 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-17 22:51:03.468 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-17 22:51:03.478 -07 000000576 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:51:03.478 -07 000000478 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 22:51:03.658 -07 000000547 INF: FPGA: Recv YMVTILE
17-03-17 22:51:03.658 -07 000000551 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 367 ms to get response, and 391 ms overall
17-03-17 22:51:03.698 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:51:03.708 -07 000000415 INF: FPGA: Recv YRDPOS 126083
17-03-17 22:51:03.708 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 22:51:03.708 -07 000000551 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:51:03.708 -07 000000551 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-17 22:51:03.708 -07 000000551 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 391 ms, distance = 0.840 mm, average velocity = 2.148 mm/sec
17-03-17 22:51:04.658 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:51:04.658 -07 000000576 INF: FPGA: Recv YRDPOS 126083
17-03-17 22:51:04.668 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:04.668 -07 000000551 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:51:04.698 -07 000000551 INF: Y Motor: After move to 61.572609, error = -0.008644, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:51:04.698 -07 000000551 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:51:04.698 -07 000000551 INF: Y Motor: Moved to 61.5640 after 1443 ms (table move)
17-03-17 22:51:04.698 -07 000000409 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139322 mm (DAC = 30435)
17-03-17 22:51:04.698 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:04.698 -07 000000482 INF: FPGA: Recv ZSGSRD 30981
17-03-17 22:51:04.708 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 22:51:04.708 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:04.708 -07 000000627 INF: FPGA: Recv ZSGSRD 30980
17-03-17 22:51:04.718 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:04.718 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:04.718 -07 000000618 INF: FPGA: Recv ZSGSRD 30977
17-03-17 22:51:04.728 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:04.728 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:04.728 -07 000000462 INF: FPGA: Recv ZSGSRD 30978
17-03-17 22:51:04.738 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:04.738 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:04.738 -07 000000551 INF: FPGA: Recv ZSGSRD 30982
17-03-17 22:51:04.748 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:04.748 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:04.748 -07 000000541 INF: FPGA: Recv ZSGSRD 30979
17-03-17 22:51:04.758 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:04.758 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:04.758 -07 000000382 INF: FPGA: Recv ZSGSRD 30971
17-03-17 22:51:04.768 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:04.768 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:04.768 -07 000000623 INF: FPGA: Recv ZSGSRD 30977
17-03-17 22:51:04.778 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:04.778 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:04.778 -07 000000618 INF: FPGA: Recv ZSGSRD 30972
17-03-17 22:51:04.788 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:04.788 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:04.788 -07 000000627 INF: FPGA: Recv ZSGSRD 30982
17-03-17 22:51:04.798 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:04.798 -07 000000409 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:51:04.798 -07 000000547 INF: FPGA: Recv ZPIEZORD 26913
17-03-17 22:51:04.808 -07 000000409 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:04.808 -07 000000409 INF: Z Motor: Piezo is near 37.5 V (nominally 0 to 100 V), expect near 46.4 V, since DAC is at 4.644 V. Piezo Error = -8.9 V.
17-03-17 22:51:04.808 -07 000000409 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.3 um, Read 10 ADC samples: Avg = 30978 (-138.5 uncal um), Error = 0.8 uncal um, Median = 30978 (-138.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30971 (-138.5 uncal um), Max = 30982 (-138.6 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 22:51:04.808 -07 000000409 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30978, posNoise = 4, negNoise = 7
17-03-17 22:51:04.808 -07 000000409 INF: Z Motor: After move to -0.139322, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:51:04.808 -07 000000409 INF: Z Motor: Settle wait time = 1447 ms, measure time = 106 ms (allowed 150 ms), total time = 1553 ms
17-03-17 22:51:04.808 -07 000000409 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 22:51:04.858 -07 000000409 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1606 ms
17-03-17 22:51:04.858 -07 000000409 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:51:04.858 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:51:04.858 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:51:04.858 -07 000000623 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:51:04.858 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:51:04.858 -07 000000551 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:51:04.858 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:51:04.858 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:51:04.858 -07 000000551 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:51:04.858 -07 000000551 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:51:04.858 -07 000000551 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:51:04.868 -07 000000551 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 22:51:04.868 -07 000000551 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 22:51:04.878 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:51:04.918 -07 000000502 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:51:05.118 -07 000000593 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:51:05.118 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:51:05.118 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:51:05.118 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 619151688, 0x0, 559484976) start.
17-03-17 22:51:05.158 -07 000000448 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:51:05.158 -07 000000482 INF: FPGA: Recv CAMSNAP
17-03-17 22:51:05.158 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 285 ms overall
17-03-17 22:51:05.228 -07 000000547 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 68, FrontChillerTemperature: 4.031682,
17-03-17 22:51:05.238 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 619151688, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 22:51:05.238 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:51:05.238 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:51:05.238 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 22:51:05.258 -07 000000462 INF: Autofocus start
17-03-17 22:51:05.258 -07 000000462 INF: MeasureProfile start
17-03-17 22:51:05.268 -07 000000415 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:51:05.268 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:51:05.278 -07 000000415 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 22:51:05.278 -07 000000462 INF: MeasureProfile done
17-03-17 22:51:05.278 -07 000000462 INF: X=16  Z correction [um]=0.0530179
17-03-17 22:51:05.278 -07 000000462 INF: Autofocus finished
17-03-17 22:51:05.288 -07 000000415 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:51:05.488 -07 000000382 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:51:05.488 -07 000000415 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 212 ms overall
17-03-17 22:51:05.488 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.56396484375, Z-position -0.139332595738606. ----------
17-03-17 22:51:05.488 -07 000000610 INF: Cycle	68	Tile	3	Exposure Settings		A	461	G	222	T	222	C	461
17-03-17 22:51:05.498 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28959, sync = True, waitForSettling = True)
17-03-17 22:51:05.498 -07 000000610 INF: Z Motor: Moving to -0.132566 mm, started at -0.139333 mm, distance = 6.77 um
17-03-17 22:51:05.498 -07 000000610 INF: FPGA: Xmit ZDACW 28959\n [Z Motor]
17-03-17 22:51:05.498 -07 000000541 INF: FPGA: Recv ZDACW
17-03-17 22:51:05.508 -07 000000610 INF: FPGA: 'ZDACW 28959' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:51:05.508 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:51:05.508 -07 000000576 INF: FPGA: Recv ZDACR 28959
17-03-17 22:51:05.518 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:05.518 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:51:05.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:05.668 -07 000000482 INF: FPGA: Recv ZSGSRD 29922
17-03-17 22:51:05.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:51:05.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:05.678 -07 000000547 INF: FPGA: Recv ZSGSRD 29930
17-03-17 22:51:05.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:05.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:05.688 -07 000000576 INF: FPGA: Recv ZSGSRD 29925
17-03-17 22:51:05.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:05.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:05.698 -07 000000541 INF: FPGA: Recv ZSGSRD 29921
17-03-17 22:51:05.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:05.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:05.708 -07 000000478 INF: FPGA: Recv ZSGSRD 29926
17-03-17 22:51:05.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:05.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:05.718 -07 000000623 INF: FPGA: Recv ZSGSRD 29931
17-03-17 22:51:05.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:05.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:05.728 -07 000000486 INF: FPGA: Recv ZSGSRD 29930
17-03-17 22:51:05.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:05.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:05.738 -07 000000576 INF: FPGA: Recv ZSGSRD 29926
17-03-17 22:51:05.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:05.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:05.748 -07 000000502 INF: FPGA: Recv ZSGSRD 29921
17-03-17 22:51:05.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:05.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:05.758 -07 000000541 INF: FPGA: Recv ZSGSRD 29930
17-03-17 22:51:05.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:05.768 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:51:05.768 -07 000000547 INF: FPGA: Recv ZPIEZORD 25528
17-03-17 22:51:05.778 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:05.778 -07 000000610 INF: Z Motor: Piezo is near 34.5 V (nominally 0 to 100 V), expect near 44.2 V, since DAC is at 4.419 V. Piezo Error = -9.7 V.
17-03-17 22:51:05.778 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.6 um, Read 10 ADC samples: Avg = 29926 (-131.8 uncal um), Error = 0.8 uncal um, Median = 29926 (-131.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29921 (-131.8 uncal um), Max = 29931 (-131.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 22:51:05.778 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29926, posNoise = 5, negNoise = 5
17-03-17 22:51:05.778 -07 000000610 INF: Z Motor: After move to -0.132566, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:51:05.778 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 22:51:05.778 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:51:05.778 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:51:05.778 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:51:05.778 -07 000000482 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:51:05.778 -07 000000541 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:51:05.778 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:51:05.778 -07 000000409 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:51:05.778 -07 000000409 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:51:05.778 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 3 ms.
17-03-17 22:51:05.778 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:51:05.778 -07 000000409 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:51:05.778 -07 000000409 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:51:05.788 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:51:05.788 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:51:05.788 -07 000000409 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:51:05.788 -07 000000409 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:51:05.798 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 22:51:05.798 -07 000000541 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 18 ms.
17-03-17 22:51:05.798 -07 000000409 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-17 22:51:05.798 -07 000000409 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 22:51:05.798 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 461 461 222 222 29136 150\n [Camera]
17-03-17 22:51:05.998 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:51:06.458 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 653
17-03-17 22:51:06.458 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 653
17-03-17 22:51:06.458 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:51:06.458 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:51:06.458 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 2334002848, 0x0, 391868352) start.
17-03-17 22:51:06.458 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 653
17-03-17 22:51:06.458 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 653
17-03-17 22:51:06.468 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:51:06.468 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:51:06.468 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 2369425112, 0x0, 418435064) start.
17-03-17 22:51:06.648 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29136 846
17-03-17 22:51:06.798 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning grn on 996
17-03-17 22:51:06.848 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 2369425112, 0x0, 418435064) end. Duration was 380 ms.
17-03-17 22:51:06.848 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-17 22:51:06.848 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:51:06.848 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:51:06.848 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 2334002848, 0x0, 391868352) end. Duration was 389 ms.
17-03-17 22:51:06.848 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 22:51:06.848 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:51:06.858 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:51:06.858 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 22:51:06.858 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 22:51:07.008 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:51:07.008 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 67. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1078, R2=1105, Total=2183. Warn if over 250 bubbles per interval.
17-03-17 22:51:07.028 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1218
17-03-17 22:51:07.028 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1218
17-03-17 22:51:07.028 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:51:07.028 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1218
17-03-17 22:51:07.028 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1218
17-03-17 22:51:07.028 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:51:07.028 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:51:07.028 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 22:51:07.038 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:51:07.038 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 22:51:07.218 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP 1411
17-03-17 22:51:07.218 -07 000000486 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:51:07.218 -07 000000610 INF: FPGA: 'CAMDBLSNAP 461 461 222 222 29136 150' command took 2 ms to send, 1413 ms to get response, and 1418 ms overall
17-03-17 22:51:07.218 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 22:51:07.218 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.56396484375, Z-Position -0.132574324565473. ------
17-03-17 22:51:07.218 -07 000000482 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:51:07.218 -07 000000623 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.13896 mm
17-03-17 22:51:07.218 -07 000000623 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:51:07.228 -07 000000478 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-17 22:51:07.228 -07 000000478 INF: Y Motor: Moving to 62.4026 mm, started at 61.5640 mm, delta = 0.8386 mm
17-03-17 22:51:07.228 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:51:07.228 -07 000000482 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 22:51:07.228 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:51:07.228 -07 000000547 INF: FPGA: Recv YRDPOS 126084
17-03-17 22:51:07.228 -07 000000541 INF: Z Motor: Entering MoveAbsStepped (DAC = 30357, sync = True, waitForSettling = False)
17-03-17 22:51:07.228 -07 000000541 INF: Z Motor: Moving to -0.138965 mm, started at -0.132574 mm, distance = -6.39 um
17-03-17 22:51:07.238 -07 000000482 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:51:07.238 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:51:07.238 -07 000000478 INF: Y Motor: Encoder = 126084 = motor step 98503.1 = 61.5645 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:51:07.238 -07 000000478 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:51:07.238 -07 000000478 INF: Y Motor: Moving 1341 steps-18
17-03-17 22:51:07.248 -07 000000541 INF: FPGA: Xmit ZDACW 30357\n [Z Motor]
17-03-17 22:51:07.248 -07 000000462 INF: FPGA: Recv ZDACW
17-03-17 22:51:07.258 -07 000000478 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:51:07.258 -07 000000541 INF: FPGA: 'ZDACW 30357' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-17 22:51:07.268 -07 000000541 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:51:07.268 -07 000000627 INF: FPGA: Recv ZDACR 30357
17-03-17 22:51:07.278 -07 000000541 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:51:07.278 -07 000000541 INF: Z Motor: MoveAbsStepped took 44 ms (did NOT wait for settling yet))
17-03-17 22:51:07.428 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 399 ms.
17-03-17 22:51:07.428 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 22:51:07.428 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:51:07.438 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 398 ms.
17-03-17 22:51:07.438 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 22:51:07.438 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:51:07.438 -07 000000618 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:51:07.438 -07 000000482 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 211 ms overall
17-03-17 22:51:07.438 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:51:07.438 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-17 22:51:07.438 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:51:07.448 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-17 22:51:07.628 -07 000000541 INF: FPGA: Recv YMVTILE
17-03-17 22:51:07.628 -07 000000478 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 393 ms overall
17-03-17 22:51:07.668 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:51:07.678 -07 000000486 INF: FPGA: Recv YRDPOS 127786
17-03-17 22:51:07.678 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 3 ms to get response, and 4 ms overall
17-03-17 22:51:07.678 -07 000000478 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:51:07.678 -07 000000478 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-17 22:51:07.678 -07 000000478 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 393 ms, distance = 0.839 mm, average velocity = 2.134 mm/sec
17-03-17 22:51:08.628 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:51:08.628 -07 000000593 INF: FPGA: Recv YRDPOS 127786
17-03-17 22:51:08.638 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:08.638 -07 000000478 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:51:08.658 -07 000000478 INF: Y Motor: After move to 62.402607, error = -0.007099, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:51:08.658 -07 000000478 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:51:08.658 -07 000000478 INF: Y Motor: Moved to 62.3955 after 1433 ms (table move)
17-03-17 22:51:08.658 -07 000000623 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138965 mm (DAC = 30357)
17-03-17 22:51:08.658 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:08.668 -07 000000618 INF: FPGA: Recv ZSGSRD 30928
17-03-17 22:51:08.668 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 22:51:08.668 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:08.668 -07 000000501 INF: FPGA: Recv ZSGSRD 30924
17-03-17 22:51:08.678 -07 000000623 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:51:08.678 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:08.678 -07 000000486 INF: FPGA: Recv ZSGSRD 30926
17-03-17 22:51:08.688 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:08.688 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:08.688 -07 000000409 INF: FPGA: Recv ZSGSRD 30926
17-03-17 22:51:08.698 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:08.698 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:08.698 -07 000000618 INF: FPGA: Recv ZSGSRD 30918
17-03-17 22:51:08.708 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:08.708 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:08.708 -07 000000448 INF: FPGA: Recv ZSGSRD 30926
17-03-17 22:51:08.718 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:08.718 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:08.718 -07 000000478 INF: FPGA: Recv ZSGSRD 30920
17-03-17 22:51:08.728 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:08.728 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:08.728 -07 000000502 INF: FPGA: Recv ZSGSRD 30922
17-03-17 22:51:08.738 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:08.738 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:08.738 -07 000000618 INF: FPGA: Recv ZSGSRD 30917
17-03-17 22:51:08.748 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:08.748 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:08.748 -07 000000501 INF: FPGA: Recv ZSGSRD 30922
17-03-17 22:51:08.758 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:08.758 -07 000000623 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:51:08.758 -07 000000627 INF: FPGA: Recv ZPIEZORD 26850
17-03-17 22:51:08.768 -07 000000623 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:08.768 -07 000000623 INF: Z Motor: Piezo is near 37.4 V (nominally 0 to 100 V), expect near 46.3 V, since DAC is at 4.632 V. Piezo Error = -9.0 V.
17-03-17 22:51:08.768 -07 000000623 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.0 um, Read 10 ADC samples: Avg = 30923 (-138.2 uncal um), Error = 0.8 uncal um, Median = 30923 (-138.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30917 (-138.1 uncal um), Max = 30928 (-138.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 22:51:08.768 -07 000000623 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30923, posNoise = 5, negNoise = 6
17-03-17 22:51:08.768 -07 000000623 INF: Z Motor: After move to -0.138965, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:51:08.768 -07 000000623 INF: Z Motor: Settle wait time = 1431 ms, measure time = 103 ms (allowed 150 ms), total time = 1534 ms
17-03-17 22:51:08.768 -07 000000623 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 22:51:08.818 -07 000000623 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1591 ms
17-03-17 22:51:08.818 -07 000000623 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:51:08.818 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:51:08.818 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:51:08.818 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:51:08.818 -07 000000448 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:51:08.818 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:51:08.818 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:51:08.818 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 22:51:08.818 -07 000000448 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:51:08.828 -07 000000448 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:51:08.828 -07 000000448 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:51:08.828 -07 000000448 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 22:51:08.828 -07 000000448 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-17 22:51:08.838 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:51:08.878 -07 000000448 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:51:09.078 -07 000000502 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:51:09.078 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:51:09.078 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:51:09.078 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2199785120, 0x0, 559484976) start.
17-03-17 22:51:09.118 -07 000000593 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:51:09.118 -07 000000623 INF: FPGA: Recv CAMSNAP
17-03-17 22:51:09.118 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 285 ms overall
17-03-17 22:51:09.198 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2199785120, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 22:51:09.198 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:51:09.198 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:51:09.198 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 22:51:09.218 -07 000000486 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:51:09.218 -07 000000501 INF: Autofocus start
17-03-17 22:51:09.218 -07 000000501 INF: MeasureProfile start
17-03-17 22:51:09.218 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:51:09.228 -07 000000486 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 22:51:09.228 -07 000000486 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:51:09.228 -07 000000501 INF: MeasureProfile done
17-03-17 22:51:09.228 -07 000000501 INF: X=16  Z correction [um]=0.0530179
17-03-17 22:51:09.228 -07 000000501 INF: Autofocus finished
17-03-17 22:51:09.428 -07 000000623 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:51:09.428 -07 000000486 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:51:09.428 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.3955078125, Z-position -0.138979264070809. ----------
17-03-17 22:51:09.428 -07 000000610 INF: Cycle	68	Tile	4	Exposure Settings		A	461	G	222	T	222	C	461
17-03-17 22:51:09.438 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28881, sync = True, waitForSettling = True)
17-03-17 22:51:09.438 -07 000000610 INF: Z Motor: Moving to -0.132209 mm, started at -0.138979 mm, distance = 6.77 um
17-03-17 22:51:09.438 -07 000000610 INF: FPGA: Xmit ZDACW 28881\n [Z Motor]
17-03-17 22:51:09.438 -07 000000415 INF: FPGA: Recv ZDACW
17-03-17 22:51:09.448 -07 000000610 INF: FPGA: 'ZDACW 28881' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:51:09.448 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:51:09.448 -07 000000478 INF: FPGA: Recv ZDACR 28881
17-03-17 22:51:09.458 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:09.458 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:51:09.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:09.608 -07 000000482 INF: FPGA: Recv ZSGSRD 29878
17-03-17 22:51:09.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:51:09.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:09.618 -07 000000576 INF: FPGA: Recv ZSGSRD 29862
17-03-17 22:51:09.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:09.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:09.628 -07 000000618 INF: FPGA: Recv ZSGSRD 29866
17-03-17 22:51:09.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:09.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:09.638 -07 000000547 INF: FPGA: Recv ZSGSRD 29873
17-03-17 22:51:09.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:09.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:09.648 -07 000000551 INF: FPGA: Recv ZSGSRD 29866
17-03-17 22:51:09.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:09.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:09.658 -07 000000623 INF: FPGA: Recv ZSGSRD 29872
17-03-17 22:51:09.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:09.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:09.668 -07 000000541 INF: FPGA: Recv ZSGSRD 29876
17-03-17 22:51:09.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:09.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:09.678 -07 000000478 INF: FPGA: Recv ZSGSRD 29868
17-03-17 22:51:09.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:09.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:09.688 -07 000000415 INF: FPGA: Recv ZSGSRD 29871
17-03-17 22:51:09.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:09.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:09.698 -07 000000462 INF: FPGA: Recv ZSGSRD 29867
17-03-17 22:51:09.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:09.708 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:51:09.708 -07 000000576 INF: FPGA: Recv ZPIEZORD 25489
17-03-17 22:51:09.718 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:09.718 -07 000000610 INF: Z Motor: Piezo is near 34.5 V (nominally 0 to 100 V), expect near 44.1 V, since DAC is at 4.407 V. Piezo Error = -9.6 V.
17-03-17 22:51:09.718 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.2 um, Read 10 ADC samples: Avg = 29870 (-131.4 uncal um), Error = 0.8 uncal um, Median = 29870 (-131.4 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 29862 (-131.4 uncal um), Max = 29878 (-131.5 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 22:51:09.718 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29870, posNoise = 8, negNoise = 8
17-03-17 22:51:09.718 -07 000000610 INF: Z Motor: After move to -0.132209, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:51:09.718 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 22:51:09.718 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:51:09.718 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:51:09.718 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:51:09.718 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:51:09.718 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:51:09.718 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:51:09.718 -07 000000482 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:51:09.718 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:51:09.718 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:51:09.718 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:51:09.718 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:51:09.718 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:51:09.728 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 22:51:09.728 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:51:09.728 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:51:09.728 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:51:09.738 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 13 ms.
17-03-17 22:51:09.738 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 18 ms.
17-03-17 22:51:09.738 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 13 ms.
17-03-17 22:51:09.738 -07 000000482 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 22:51:09.748 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 461 461 222 222 29057 150\n [Camera]
17-03-17 22:51:09.938 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:51:10.408 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 653
17-03-17 22:51:10.408 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 653
17-03-17 22:51:10.408 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:51:10.408 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 653
17-03-17 22:51:10.408 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 653
17-03-17 22:51:10.408 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:51:10.518 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:51:10.518 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-17 22:51:10.518 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:51:10.518 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-17 22:51:10.598 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29057 846
17-03-17 22:51:10.608 -07 000000627 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 68, FrontChillerTemperature: 4.000345,
17-03-17 22:51:10.748 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning grn on 996
17-03-17 22:51:10.908 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 393 ms.
17-03-17 22:51:10.908 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 22:51:10.908 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:51:10.908 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 389 ms.
17-03-17 22:51:10.908 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 22:51:10.908 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:51:10.918 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:51:10.918 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 511 ms.
17-03-17 22:51:10.918 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 22:51:10.928 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 516 ms.
17-03-17 22:51:10.968 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1220
17-03-17 22:51:10.968 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1220
17-03-17 22:51:10.968 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:51:10.978 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1220
17-03-17 22:51:10.978 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1220
17-03-17 22:51:10.978 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:51:10.978 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 22:51:10.978 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:51:10.978 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:51:10.978 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 2214461200, 0x0, 418435064) start.
17-03-17 22:51:11.158 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP 1411
17-03-17 22:51:11.158 -07 000000551 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:51:11.158 -07 000000610 INF: FPGA: 'CAMDBLSNAP 461 461 222 222 29057 150' command took 2 ms to send, 1408 ms to get response, and 1418 ms overall
17-03-17 22:51:11.168 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 22:51:11.168 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.3955078125, Z-Position -0.132214568685535. ------
17-03-17 22:51:11.168 -07 000000482 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:51:11.168 -07 000000409 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.13896 mm
17-03-17 22:51:11.168 -07 000000409 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:51:11.168 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:51:11.178 -07 000000576 INF: Z Motor: Entering MoveAbsStepped (DAC = 30356, sync = True, waitForSettling = False)
17-03-17 22:51:11.178 -07 000000576 INF: Z Motor: Moving to -0.138961 mm, started at -0.132215 mm, distance = -6.75 um
17-03-17 22:51:11.178 -07 000000482 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:51:11.178 -07 000000576 INF: FPGA: Xmit ZDACW 30356\n [Z Motor]
17-03-17 22:51:11.178 -07 000000462 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-17 22:51:11.178 -07 000000462 INF: Y Motor: Moving to 63.2326 mm, started at 62.3955 mm, delta = 0.8371 mm
17-03-17 22:51:11.178 -07 000000448 INF: FPGA: Recv ZDACW
17-03-17 22:51:11.188 -07 000000576 INF: FPGA: 'ZDACW 30356' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:11.188 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:51:11.188 -07 000000478 INF: FPGA: Recv YRDPOS 127787
17-03-17 22:51:11.198 -07 000000482 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:51:11.198 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-17 22:51:11.198 -07 000000462 INF: Y Motor: Encoder = 127787 = motor step 99833.6 = 62.3960 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:51:11.198 -07 000000462 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:51:11.198 -07 000000462 INF: Y Motor: Moving 1339 steps-15
17-03-17 22:51:11.208 -07 000000576 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:51:11.208 -07 000000502 INF: FPGA: Recv ZDACR 30356
17-03-17 22:51:11.218 -07 000000462 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:51:11.218 -07 000000576 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:51:11.218 -07 000000576 INF: Z Motor: MoveAbsStepped took 40 ms (did NOT wait for settling yet))
17-03-17 22:51:11.368 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 2214461200, 0x0, 418435064) end. Duration was 386 ms.
17-03-17 22:51:11.368 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 22:51:11.368 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:51:11.368 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 393 ms.
17-03-17 22:51:11.368 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 22:51:11.368 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:51:11.368 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:51:11.378 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:51:11.378 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 22:51:11.378 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-17 22:51:11.398 -07 000000551 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:51:11.398 -07 000000482 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 221 ms overall
17-03-17 22:51:11.588 -07 000000502 INF: FPGA: Recv YMVTILE
17-03-17 22:51:11.588 -07 000000462 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-17 22:51:11.628 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:51:11.638 -07 000000382 INF: FPGA: Recv YRDPOS 129483
17-03-17 22:51:11.638 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:51:11.638 -07 000000462 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:51:11.638 -07 000000462 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-17 22:51:11.638 -07 000000462 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.837 mm, average velocity = 2.125 mm/sec
17-03-17 22:51:12.008 -07 000000547 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:51:12.008 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 67. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1078, R2=1105, Total=2183. Warn if over 250 bubbles per interval.
17-03-17 22:51:12.588 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:51:12.588 -07 000000547 INF: FPGA: Recv YRDPOS 129483
17-03-17 22:51:12.598 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:12.598 -07 000000462 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:51:12.618 -07 000000462 INF: Y Motor: After move to 63.232609, error = -0.008488, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:51:12.618 -07 000000462 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:51:12.618 -07 000000462 INF: Y Motor: Moved to 63.2241 after 1445 ms (table move)
17-03-17 22:51:12.628 -07 000000409 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138961 mm (DAC = 30356)
17-03-17 22:51:12.628 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:12.628 -07 000000478 INF: FPGA: Recv ZSGSRD 30918
17-03-17 22:51:12.638 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:12.638 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:12.638 -07 000000547 INF: FPGA: Recv ZSGSRD 30923
17-03-17 22:51:12.648 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:12.648 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:12.648 -07 000000382 INF: FPGA: Recv ZSGSRD 30923
17-03-17 22:51:12.658 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:12.658 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:12.658 -07 000000448 INF: FPGA: Recv ZSGSRD 30917
17-03-17 22:51:12.668 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:12.668 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:12.668 -07 000000478 INF: FPGA: Recv ZSGSRD 30932
17-03-17 22:51:12.678 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:12.678 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:12.678 -07 000000551 INF: FPGA: Recv ZSGSRD 30918
17-03-17 22:51:12.688 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:12.688 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:12.688 -07 000000627 INF: FPGA: Recv ZSGSRD 30917
17-03-17 22:51:12.698 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:12.698 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:12.698 -07 000000623 INF: FPGA: Recv ZSGSRD 30914
17-03-17 22:51:12.708 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:12.708 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:12.708 -07 000000478 INF: FPGA: Recv ZSGSRD 30917
17-03-17 22:51:12.718 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:12.718 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:12.718 -07 000000551 INF: FPGA: Recv ZSGSRD 30928
17-03-17 22:51:12.728 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:12.728 -07 000000409 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:51:12.728 -07 000000541 INF: FPGA: Recv ZPIEZORD 26901
17-03-17 22:51:12.738 -07 000000409 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:12.738 -07 000000409 INF: Z Motor: Piezo is near 37.5 V (nominally 0 to 100 V), expect near 46.3 V, since DAC is at 4.632 V. Piezo Error = -8.9 V.
17-03-17 22:51:12.738 -07 000000409 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.0 um, Read 10 ADC samples: Avg = 30921 (-138.2 uncal um), Error = 0.8 uncal um, Median = 30918 (-138.1 uncal um), StdDev = 6 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 30914 (-138.1 uncal um), Max = 30932 (-138.2 uncal um), Pos Noise = 11 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 22:51:12.738 -07 000000409 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30921, posNoise = 11, negNoise = 7
17-03-17 22:51:12.738 -07 000000409 INF: Z Motor: After move to -0.138961, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:51:12.738 -07 000000409 INF: Z Motor: Settle wait time = 1450 ms, measure time = 110 ms (allowed 150 ms), total time = 1560 ms
17-03-17 22:51:12.738 -07 000000409 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-17 22:51:12.778 -07 000000409 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1603 ms
17-03-17 22:51:12.778 -07 000000409 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:51:12.778 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:51:12.778 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:51:12.778 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:51:12.778 -07 000000415 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:51:12.778 -07 000000478 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:51:12.778 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:51:12.778 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 22:51:12.778 -07 000000478 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:51:12.788 -07 000000478 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:51:12.788 -07 000000478 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:51:12.788 -07 000000478 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 22:51:12.788 -07 000000478 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 22:51:12.798 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:51:12.838 -07 000000627 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:51:13.038 -07 000000502 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:51:13.038 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:51:13.038 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:51:13.038 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2199785120, 0x0, 559484976) start.
17-03-17 22:51:13.078 -07 000000627 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:51:13.078 -07 000000551 INF: FPGA: Recv CAMSNAP
17-03-17 22:51:13.078 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 3 ms to send, 275 ms to get response, and 284 ms overall
17-03-17 22:51:13.158 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2199785120, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 22:51:13.158 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:51:13.158 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:51:13.158 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 22:51:13.178 -07 000000623 INF: Autofocus start
17-03-17 22:51:13.178 -07 000000623 INF: MeasureProfile start
17-03-17 22:51:13.178 -07 000000547 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:51:13.178 -07 000000627 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:51:13.188 -07 000000547 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:51:13.188 -07 000000547 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:51:13.188 -07 000000623 INF: MeasureProfile done
17-03-17 22:51:13.188 -07 000000623 INF: X=5  Z correction [um]=0.0001036296
17-03-17 22:51:13.188 -07 000000623 INF: Autofocus finished
17-03-17 22:51:13.388 -07 000000627 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:51:13.388 -07 000000547 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:51:13.388 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.22412109375, Z-position -0.138966415646526. ----------
17-03-17 22:51:13.388 -07 000000610 INF: Cycle	68	Tile	5	Exposure Settings		A	461	G	222	T	222	C	461
17-03-17 22:51:13.398 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28869, sync = True, waitForSettling = True)
17-03-17 22:51:13.398 -07 000000610 INF: Z Motor: Moving to -0.132154 mm, started at -0.138966 mm, distance = 6.81 um
17-03-17 22:51:13.398 -07 000000610 INF: FPGA: Xmit ZDACW 28869\n [Z Motor]
17-03-17 22:51:13.398 -07 000000576 INF: FPGA: Recv ZDACW
17-03-17 22:51:13.408 -07 000000610 INF: FPGA: 'ZDACW 28869' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:13.408 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:51:13.408 -07 000000486 INF: FPGA: Recv ZDACR 28869
17-03-17 22:51:13.418 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:13.418 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:51:13.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:13.568 -07 000000482 INF: FPGA: Recv ZSGSRD 29863
17-03-17 22:51:13.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:51:13.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:13.578 -07 000000502 INF: FPGA: Recv ZSGSRD 29859
17-03-17 22:51:13.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:13.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:13.588 -07 000000462 INF: FPGA: Recv ZSGSRD 29866
17-03-17 22:51:13.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:13.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:13.598 -07 000000618 INF: FPGA: Recv ZSGSRD 29861
17-03-17 22:51:13.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:13.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:13.608 -07 000000486 INF: FPGA: Recv ZSGSRD 29864
17-03-17 22:51:13.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:13.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:13.618 -07 000000501 INF: FPGA: Recv ZSGSRD 29862
17-03-17 22:51:13.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:51:13.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:13.628 -07 000000623 INF: FPGA: Recv ZSGSRD 29859
17-03-17 22:51:13.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:13.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:13.638 -07 000000502 INF: FPGA: Recv ZSGSRD 29866
17-03-17 22:51:13.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:13.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:13.648 -07 000000448 INF: FPGA: Recv ZSGSRD 29860
17-03-17 22:51:13.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:13.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:13.658 -07 000000618 INF: FPGA: Recv ZSGSRD 29862
17-03-17 22:51:13.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:13.668 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:51:13.668 -07 000000501 INF: FPGA: Recv ZPIEZORD 25498
17-03-17 22:51:13.678 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:13.678 -07 000000610 INF: Z Motor: Piezo is near 34.5 V (nominally 0 to 100 V), expect near 44.1 V, since DAC is at 4.405 V. Piezo Error = -9.6 V.
17-03-17 22:51:13.678 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.2 um, Read 10 ADC samples: Avg = 29862 (-131.4 uncal um), Error = 0.8 uncal um, Median = 29862 (-131.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 29859 (-131.4 uncal um), Max = 29866 (-131.4 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 22:51:13.678 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29862, posNoise = 4, negNoise = 3
17-03-17 22:51:13.678 -07 000000610 INF: Z Motor: After move to -0.132154, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:51:13.678 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 22:51:13.678 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:51:13.678 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:51:13.678 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:51:13.678 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:51:13.678 -07 000000551 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:51:13.678 -07 000000478 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:51:13.678 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:51:13.678 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:51:13.678 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:51:13.678 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:51:13.678 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:51:13.678 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:51:13.678 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:51:13.678 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:51:13.688 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 22:51:13.688 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:51:13.688 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 22:51:13.688 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 22:51:13.698 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 22:51:13.698 -07 000000478 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 22:51:13.698 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 461 461 222 222 29046 150\n [Camera]
17-03-17 22:51:13.898 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:51:14.358 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 653
17-03-17 22:51:14.358 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 653
17-03-17 22:51:14.358 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:51:14.358 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:51:14.358 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 656674232, 0x0, 391868352) start.
17-03-17 22:51:14.358 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 653
17-03-17 22:51:14.358 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 653
17-03-17 22:51:14.358 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:51:14.358 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:51:14.358 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2334002848, 0x0, 418435064) start.
17-03-17 22:51:14.548 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29046 846
17-03-17 22:51:14.698 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning grn on 996
17-03-17 22:51:14.748 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 656674232, 0x0, 391868352) end. Duration was 391 ms.
17-03-17 22:51:14.748 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 22:51:14.748 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:51:14.748 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2334002848, 0x0, 418435064) end. Duration was 391 ms.
17-03-17 22:51:14.748 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 22:51:14.758 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:51:14.758 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:51:14.758 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 22:51:14.758 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:51:14.768 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 22:51:14.918 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1218
17-03-17 22:51:14.918 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1218
17-03-17 22:51:14.928 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:51:14.928 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:51:14.928 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 2369425112, 0x0, 391868352) start.
17-03-17 22:51:14.928 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1218
17-03-17 22:51:14.928 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1218
17-03-17 22:51:14.928 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:51:14.928 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:51:14.928 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1094749800, 0x0, 418435064) start.
17-03-17 22:51:15.118 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP 1410
17-03-17 22:51:15.118 -07 000000618 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:51:15.118 -07 000000610 INF: FPGA: 'CAMDBLSNAP 461 461 222 222 29046 150' command took 2 ms to send, 1411 ms to get response, and 1417 ms overall
17-03-17 22:51:15.118 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 22:51:15.118 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.22412109375, Z-Position -0.132163174988401. ------
17-03-17 22:51:15.118 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:51:15.118 -07 000000415 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.13862 mm
17-03-17 22:51:15.118 -07 000000415 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:51:15.128 -07 000000486 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-17 22:51:15.128 -07 000000486 INF: Y Motor: Moving to 64.0626 mm, started at 63.2241 mm, delta = 0.8385 mm
17-03-17 22:51:15.128 -07 000000409 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:51:15.128 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:51:15.128 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:51:15.128 -07 000000482 INF: Z Motor: Entering MoveAbsStepped (DAC = 30281, sync = True, waitForSettling = False)
17-03-17 22:51:15.128 -07 000000482 INF: Z Motor: Moving to -0.138618 mm, started at -0.132163 mm, distance = -6.45 um
17-03-17 22:51:15.128 -07 000000462 INF: FPGA: Recv YRDPOS 129484
17-03-17 22:51:15.138 -07 000000501 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:51:15.138 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:15.138 -07 000000486 INF: Y Motor: Encoder = 129484 = motor step 101159.4 = 63.2246 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:51:15.138 -07 000000486 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:51:15.138 -07 000000486 INF: Y Motor: Moving 1341 steps-17
17-03-17 22:51:15.148 -07 000000482 INF: FPGA: Xmit ZDACW 30281\n [Z Motor]
17-03-17 22:51:15.148 -07 000000382 INF: FPGA: Recv ZDACW
17-03-17 22:51:15.158 -07 000000486 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:51:15.158 -07 000000482 INF: FPGA: 'ZDACW 30281' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-17 22:51:15.168 -07 000000482 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:51:15.168 -07 000000409 INF: FPGA: Recv ZDACR 30281
17-03-17 22:51:15.178 -07 000000482 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:51:15.178 -07 000000482 INF: Z Motor: MoveAbsStepped took 48 ms (did NOT wait for settling yet))
17-03-17 22:51:15.328 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 2369425112, 0x0, 391868352) end. Duration was 402 ms.
17-03-17 22:51:15.328 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 22:51:15.328 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:51:15.328 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1094749800, 0x0, 418435064) end. Duration was 401 ms.
17-03-17 22:51:15.328 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 22:51:15.328 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:51:15.328 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:51:15.338 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 22:51:15.338 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-17 22:51:15.338 -07 000000623 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:51:15.338 -07 000000501 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 211 ms overall
17-03-17 22:51:15.338 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-17 22:51:15.528 -07 000000462 INF: FPGA: Recv YMVTILE
17-03-17 22:51:15.528 -07 000000486 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-17 22:51:15.568 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:51:15.578 -07 000000382 INF: FPGA: Recv YRDPOS 131189
17-03-17 22:51:15.578 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 22:51:15.578 -07 000000486 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:51:15.578 -07 000000486 INF: Y Motor: Position error before settling (table move) = -11 encoder counts (-0.005 mm)
17-03-17 22:51:15.578 -07 000000486 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.838 mm, average velocity = 2.128 mm/sec
17-03-17 22:51:15.968 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 68, FrontChillerTemperature: 4.001704,
17-03-17 22:51:16.528 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:51:16.528 -07 000000593 INF: FPGA: Recv YRDPOS 131189
17-03-17 22:51:16.538 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:51:16.538 -07 000000486 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:51:16.558 -07 000000486 INF: Y Motor: After move to 64.062607, error = -0.005478, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:51:16.558 -07 000000486 INF: Y Motor: Position error after settling (table move) = -11 encoder counts (-0.005 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:51:16.558 -07 000000486 INF: Y Motor: Moved to 64.0571 after 1433 ms (table move)
17-03-17 22:51:16.558 -07 000000415 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138618 mm (DAC = 30281)
17-03-17 22:51:16.558 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:16.558 -07 000000501 INF: FPGA: Recv ZSGSRD 30865
17-03-17 22:51:16.568 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:51:16.568 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:16.568 -07 000000623 INF: FPGA: Recv ZSGSRD 30867
17-03-17 22:51:16.578 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:16.578 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:16.578 -07 000000627 INF: FPGA: Recv ZSGSRD 30859
17-03-17 22:51:16.588 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:16.588 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:16.588 -07 000000409 INF: FPGA: Recv ZSGSRD 30870
17-03-17 22:51:16.598 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:16.598 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:16.598 -07 000000502 INF: FPGA: Recv ZSGSRD 30869
17-03-17 22:51:16.608 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:16.608 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:16.608 -07 000000618 INF: FPGA: Recv ZSGSRD 30868
17-03-17 22:51:16.618 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:16.618 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:16.618 -07 000000541 INF: FPGA: Recv ZSGSRD 30868
17-03-17 22:51:16.628 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:16.628 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:16.628 -07 000000551 INF: FPGA: Recv ZSGSRD 30868
17-03-17 22:51:16.638 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:16.638 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:16.638 -07 000000482 INF: FPGA: Recv ZSGSRD 30859
17-03-17 22:51:16.648 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:16.648 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:16.648 -07 000000448 INF: FPGA: Recv ZSGSRD 30873
17-03-17 22:51:16.658 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:16.658 -07 000000415 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:51:16.658 -07 000000541 INF: FPGA: Recv ZPIEZORD 26828
17-03-17 22:51:16.668 -07 000000415 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:16.668 -07 000000415 INF: Z Motor: Piezo is near 37.3 V (nominally 0 to 100 V), expect near 46.2 V, since DAC is at 4.621 V. Piezo Error = -8.9 V.
17-03-17 22:51:16.668 -07 000000415 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.6 um, Read 10 ADC samples: Avg = 30867 (-137.8 uncal um), Error = 0.8 uncal um, Median = 30868 (-137.8 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30859 (-137.8 uncal um), Max = 30873 (-137.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 22:51:16.668 -07 000000415 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30867, posNoise = 6, negNoise = 8
17-03-17 22:51:16.668 -07 000000415 INF: Z Motor: After move to -0.138618, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:51:16.668 -07 000000415 INF: Z Motor: Settle wait time = 1435 ms, measure time = 105 ms (allowed 150 ms), total time = 1540 ms
17-03-17 22:51:16.668 -07 000000415 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 22:51:16.718 -07 000000415 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1592 ms
17-03-17 22:51:16.718 -07 000000415 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:51:16.718 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:51:16.718 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:51:16.718 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:51:16.718 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:51:16.718 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:51:16.718 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:51:16.718 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:51:16.718 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:51:16.728 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:51:16.728 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:51:16.728 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 22:51:16.728 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 22:51:16.738 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:51:16.778 -07 000000593 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:51:16.978 -07 000000576 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:51:16.978 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:51:16.978 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:51:16.978 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 619151688, 0x0, 559484976) start.
17-03-17 22:51:17.008 -07 000000482 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:51:17.018 -07 000000448 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:51:17.018 -07 000000478 INF: FPGA: Recv CAMSNAP
17-03-17 22:51:17.018 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 285 ms overall
17-03-17 22:51:17.098 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 619151688, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 22:51:17.098 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:51:17.098 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 22:51:17.098 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-17 22:51:17.108 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 67. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1078, R2=1105, Total=2183. Warn if over 250 bubbles per interval.
17-03-17 22:51:17.118 -07 000000486 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:51:17.118 -07 000000501 INF: Autofocus start
17-03-17 22:51:17.118 -07 000000501 INF: MeasureProfile start
17-03-17 22:51:17.118 -07 000000409 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:51:17.128 -07 000000486 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:51:17.128 -07 000000486 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:51:17.138 -07 000000501 INF: MeasureProfile done
17-03-17 22:51:17.138 -07 000000501 INF: X=0  Z correction [um]=-0.02394831
17-03-17 22:51:17.138 -07 000000501 INF: Autofocus finished
17-03-17 22:51:17.328 -07 000000462 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:51:17.328 -07 000000486 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:51:17.328 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.05712890625, Z-position -0.13861950819087. ----------
17-03-17 22:51:17.338 -07 000000610 INF: Cycle	68	Tile	6	Exposure Settings		A	461	G	222	T	222	C	461
17-03-17 22:51:17.338 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28788, sync = True, waitForSettling = True)
17-03-17 22:51:17.338 -07 000000610 INF: Z Motor: Moving to -0.131783 mm, started at -0.138620 mm, distance = 6.84 um
17-03-17 22:51:17.338 -07 000000610 INF: FPGA: Xmit ZDACW 28788\n [Z Motor]
17-03-17 22:51:17.338 -07 000000482 INF: FPGA: Recv ZDACW
17-03-17 22:51:17.348 -07 000000610 INF: FPGA: 'ZDACW 28788' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:51:17.348 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:51:17.348 -07 000000382 INF: FPGA: Recv ZDACR 28788
17-03-17 22:51:17.358 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:17.358 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:51:17.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:17.508 -07 000000486 INF: FPGA: Recv ZSGSRD 29804
17-03-17 22:51:17.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:51:17.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:17.518 -07 000000478 INF: FPGA: Recv ZSGSRD 29808
17-03-17 22:51:17.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:17.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:17.528 -07 000000501 INF: FPGA: Recv ZSGSRD 29807
17-03-17 22:51:17.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:17.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:17.538 -07 000000551 INF: FPGA: Recv ZSGSRD 29805
17-03-17 22:51:17.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:17.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:17.548 -07 000000618 INF: FPGA: Recv ZSGSRD 29797
17-03-17 22:51:17.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:17.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:17.558 -07 000000486 INF: FPGA: Recv ZSGSRD 29803
17-03-17 22:51:17.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:17.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:17.568 -07 000000478 INF: FPGA: Recv ZSGSRD 29801
17-03-17 22:51:17.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:17.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:17.578 -07 000000501 INF: FPGA: Recv ZSGSRD 29801
17-03-17 22:51:17.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:17.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:17.588 -07 000000551 INF: FPGA: Recv ZSGSRD 29801
17-03-17 22:51:17.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:17.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:17.598 -07 000000448 INF: FPGA: Recv ZSGSRD 29807
17-03-17 22:51:17.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:17.608 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:51:17.608 -07 000000547 INF: FPGA: Recv ZPIEZORD 25444
17-03-17 22:51:17.618 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:17.618 -07 000000610 INF: Z Motor: Piezo is near 34.4 V (nominally 0 to 100 V), expect near 43.9 V, since DAC is at 4.393 V. Piezo Error = -9.6 V.
17-03-17 22:51:17.618 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.8 um, Read 10 ADC samples: Avg = 29803 (-131.0 uncal um), Error = 0.8 uncal um, Median = 29804 (-131.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29797 (-131.0 uncal um), Max = 29808 (-131.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 22:51:17.618 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29803, posNoise = 5, negNoise = 6
17-03-17 22:51:17.618 -07 000000610 INF: Z Motor: After move to -0.131783, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:51:17.618 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 22:51:17.618 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:51:17.618 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:51:17.618 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:51:17.618 -07 000000478 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:51:17.618 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:51:17.618 -07 000000448 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:51:17.618 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:51:17.618 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:51:17.618 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 22:51:17.618 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:51:17.618 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:51:17.618 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:51:17.618 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 22:51:17.628 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:51:17.628 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:51:17.628 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:51:17.628 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 22:51:17.628 -07 000000478 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 22:51:17.628 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 22:51:17.638 -07 000000448 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 22:51:17.638 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 461 461 222 222 28965 150\n [Camera]
17-03-17 22:51:17.838 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:51:18.298 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 653
17-03-17 22:51:18.298 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 653
17-03-17 22:51:18.298 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:51:18.298 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:51:18.298 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 1130172064, 0x0, 391868352) start.
17-03-17 22:51:18.298 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 653
17-03-17 22:51:18.298 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 653
17-03-17 22:51:18.298 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:51:18.298 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:51:18.298 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 1165594328, 0x0, 418435064) start.
17-03-17 22:51:18.488 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28965 846
17-03-17 22:51:18.638 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning grn on 996
17-03-17 22:51:18.678 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 1165594328, 0x0, 418435064) end. Duration was 377 ms.
17-03-17 22:51:18.678 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-17 22:51:18.678 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:51:18.678 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 1130172064, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 22:51:18.678 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 22:51:18.678 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:51:18.678 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:51:18.688 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 22:51:18.688 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 22:51:18.688 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 22:51:18.858 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1218
17-03-17 22:51:18.858 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1218
17-03-17 22:51:18.858 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:51:18.858 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:51:18.858 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 22:51:18.868 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1218
17-03-17 22:51:18.868 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1218
17-03-17 22:51:18.868 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:51:18.868 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:51:18.868 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) start.
17-03-17 22:51:19.048 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP 1410
17-03-17 22:51:19.048 -07 000000541 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:51:19.058 -07 000000610 INF: FPGA: 'CAMDBLSNAP 461 461 222 222 28965 150' command took 2 ms to send, 1409 ms to get response, and 1418 ms overall
17-03-17 22:51:19.058 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 22:51:19.058 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.05712890625, Z-Position -0.131784146472037. ------
17-03-17 22:51:19.058 -07 000000409 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:51:19.058 -07 000000576 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.13838 mm
17-03-17 22:51:19.058 -07 000000576 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:51:19.058 -07 000000501 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-17 22:51:19.058 -07 000000501 INF: Y Motor: Moving to 64.8926 mm, started at 64.0571 mm, delta = 0.8355 mm
17-03-17 22:51:19.058 -07 000000623 INF: Z Motor: Entering MoveAbsStepped (DAC = 30228, sync = True, waitForSettling = False)
17-03-17 22:51:19.058 -07 000000623 INF: Z Motor: Moving to -0.138375 mm, started at -0.131784 mm, distance = -6.59 um
17-03-17 22:51:19.058 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:51:19.068 -07 000000409 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 22:51:19.068 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:51:19.068 -07 000000382 INF: FPGA: Recv YRDPOS 131189
17-03-17 22:51:19.078 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 22:51:19.078 -07 000000623 INF: FPGA: Xmit ZDACW 30228\n [Z Motor]
17-03-17 22:51:19.078 -07 000000501 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:51:19.078 -07 000000501 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:51:19.078 -07 000000501 INF: Y Motor: Moving 1337 steps-11
17-03-17 22:51:19.078 -07 000000478 INF: FPGA: Recv ZDACW
17-03-17 22:51:19.088 -07 000000409 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:51:19.088 -07 000000623 INF: FPGA: 'ZDACW 30228' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-17 22:51:19.098 -07 000000501 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:51:19.108 -07 000000623 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:51:19.108 -07 000000482 INF: FPGA: Recv ZDACR 30228
17-03-17 22:51:19.118 -07 000000623 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:51:19.118 -07 000000623 INF: Z Motor: MoveAbsStepped took 52 ms (did NOT wait for settling yet))
17-03-17 22:51:19.268 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 407 ms.
17-03-17 22:51:19.268 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-17 22:51:19.268 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:51:19.268 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) end. Duration was 404 ms.
17-03-17 22:51:19.268 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-17 22:51:19.268 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:51:19.278 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:51:19.278 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 22:51:19.278 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 415 ms.
17-03-17 22:51:19.278 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 417 ms.
17-03-17 22:51:19.288 -07 000000415 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:51:19.288 -07 000000409 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 22:51:19.468 -07 000000382 INF: FPGA: Recv YMVTILE
17-03-17 22:51:19.468 -07 000000501 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 398 ms overall
17-03-17 22:51:19.508 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:51:19.518 -07 000000448 INF: FPGA: Recv YRDPOS 132872
17-03-17 22:51:19.518 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 22:51:19.518 -07 000000501 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:51:19.518 -07 000000501 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 22:51:19.518 -07 000000501 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 399 ms, distance = 0.835 mm, average velocity = 2.094 mm/sec
17-03-17 22:51:20.468 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:51:20.468 -07 000000409 INF: FPGA: Recv YRDPOS 132872
17-03-17 22:51:20.478 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:51:20.478 -07 000000501 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:51:20.498 -07 000000501 INF: Y Motor: After move to 64.892609, error = -0.013702, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:51:20.498 -07 000000501 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:51:20.498 -07 000000501 INF: Y Motor: Moved to 64.8789 after 1437 ms (table move)
17-03-17 22:51:20.498 -07 000000576 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138375 mm (DAC = 30228)
17-03-17 22:51:20.498 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:20.508 -07 000000593 INF: FPGA: Recv ZSGSRD 30836
17-03-17 22:51:20.508 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 22:51:20.508 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:20.508 -07 000000627 INF: FPGA: Recv ZSGSRD 30835
17-03-17 22:51:20.518 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:51:20.518 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:20.518 -07 000000462 INF: FPGA: Recv ZSGSRD 30830
17-03-17 22:51:20.528 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:20.528 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:20.528 -07 000000501 INF: FPGA: Recv ZSGSRD 30828
17-03-17 22:51:20.538 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:20.538 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:20.538 -07 000000382 INF: FPGA: Recv ZSGSRD 30834
17-03-17 22:51:20.548 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:20.548 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:20.548 -07 000000627 INF: FPGA: Recv ZSGSRD 30835
17-03-17 22:51:20.558 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:20.558 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:20.558 -07 000000486 INF: FPGA: Recv ZSGSRD 30834
17-03-17 22:51:20.568 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:20.568 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:20.568 -07 000000448 INF: FPGA: Recv ZSGSRD 30832
17-03-17 22:51:20.578 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:20.578 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:20.578 -07 000000482 INF: FPGA: Recv ZSGSRD 30826
17-03-17 22:51:20.588 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:20.588 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:20.588 -07 000000551 INF: FPGA: Recv ZSGSRD 30826
17-03-17 22:51:20.598 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:20.598 -07 000000576 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:51:20.598 -07 000000627 INF: FPGA: Recv ZPIEZORD 26784
17-03-17 22:51:20.608 -07 000000576 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:20.608 -07 000000576 INF: Z Motor: Piezo is near 37.2 V (nominally 0 to 100 V), expect near 46.1 V, since DAC is at 4.612 V. Piezo Error = -8.9 V.
17-03-17 22:51:20.608 -07 000000576 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.4 um, Read 10 ADC samples: Avg = 30832 (-137.6 uncal um), Error = 0.8 uncal um, Median = 30833 (-137.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 30826 (-137.6 uncal um), Max = 30836 (-137.6 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 22:51:20.608 -07 000000576 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30832, posNoise = 4, negNoise = 6
17-03-17 22:51:20.608 -07 000000576 INF: Z Motor: After move to -0.138375, error = -0.000020, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:51:20.608 -07 000000576 INF: Z Motor: Settle wait time = 1440 ms, measure time = 103 ms (allowed 150 ms), total time = 1543 ms
17-03-17 22:51:20.608 -07 000000576 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 22:51:20.658 -07 000000576 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1594 ms
17-03-17 22:51:20.658 -07 000000576 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:51:20.658 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:51:20.658 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:51:20.658 -07 000000478 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:51:20.658 -07 000000593 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:51:20.658 -07 000000448 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:51:20.658 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:51:20.658 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:51:20.658 -07 000000448 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:51:20.668 -07 000000448 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:51:20.668 -07 000000448 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:51:20.668 -07 000000448 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 22:51:20.668 -07 000000448 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-17 22:51:20.678 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:51:20.718 -07 000000409 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:51:20.918 -07 000000541 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:51:20.918 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:51:20.928 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:51:20.928 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 22:51:20.958 -07 000000551 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:51:20.958 -07 000000623 INF: FPGA: Recv CAMSNAP
17-03-17 22:51:20.958 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 285 ms overall
17-03-17 22:51:21.038 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 22:51:21.038 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:51:21.038 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:51:21.038 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 22:51:21.058 -07 000000541 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:51:21.058 -07 000000627 INF: Autofocus start
17-03-17 22:51:21.058 -07 000000627 INF: MeasureProfile start
17-03-17 22:51:21.058 -07 000000478 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:51:21.068 -07 000000541 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:51:21.068 -07 000000541 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:51:21.068 -07 000000627 INF: MeasureProfile done
17-03-17 22:51:21.068 -07 000000627 INF: X=14  Z correction [um]=0.04339712
17-03-17 22:51:21.068 -07 000000627 INF: Autofocus finished
17-03-17 22:51:21.268 -07 000000415 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:51:21.268 -07 000000541 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 202 ms overall
17-03-17 22:51:21.268 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87890625, Z-position -0.138394660765909. ----------
17-03-17 22:51:21.268 -07 000000610 INF: Cycle	68	Tile	7	Exposure Settings		A	461	G	222	T	222	C	461
17-03-17 22:51:21.278 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28750, sync = True, waitForSettling = True)
17-03-17 22:51:21.278 -07 000000610 INF: Z Motor: Moving to -0.131609 mm, started at -0.138395 mm, distance = 6.79 um
17-03-17 22:51:21.278 -07 000000610 INF: FPGA: Xmit ZDACW 28750\n [Z Motor]
17-03-17 22:51:21.278 -07 000000618 INF: FPGA: Recv ZDACW
17-03-17 22:51:21.288 -07 000000610 INF: FPGA: 'ZDACW 28750' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:51:21.288 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:51:21.288 -07 000000486 INF: FPGA: Recv ZDACR 28750
17-03-17 22:51:21.298 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:21.298 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:51:21.338 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 68, FrontChillerTemperature: 4.007176,
17-03-17 22:51:21.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:21.448 -07 000000382 INF: FPGA: Recv ZSGSRD 29777
17-03-17 22:51:21.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:51:21.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:21.458 -07 000000502 INF: FPGA: Recv ZSGSRD 29780
17-03-17 22:51:21.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:21.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:21.468 -07 000000627 INF: FPGA: Recv ZSGSRD 29776
17-03-17 22:51:21.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:21.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:21.478 -07 000000541 INF: FPGA: Recv ZSGSRD 29776
17-03-17 22:51:21.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:21.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:21.488 -07 000000482 INF: FPGA: Recv ZSGSRD 29772
17-03-17 22:51:21.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:21.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:21.498 -07 000000382 INF: FPGA: Recv ZSGSRD 29772
17-03-17 22:51:21.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:21.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:21.508 -07 000000623 INF: FPGA: Recv ZSGSRD 29784
17-03-17 22:51:21.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:21.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:21.518 -07 000000502 INF: FPGA: Recv ZSGSRD 29777
17-03-17 22:51:21.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:21.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:21.528 -07 000000415 INF: FPGA: Recv ZSGSRD 29775
17-03-17 22:51:21.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:21.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:21.538 -07 000000486 INF: FPGA: Recv ZSGSRD 29774
17-03-17 22:51:21.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:21.548 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:51:21.548 -07 000000382 INF: FPGA: Recv ZPIEZORD 25426
17-03-17 22:51:21.558 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:21.558 -07 000000610 INF: Z Motor: Piezo is near 34.3 V (nominally 0 to 100 V), expect near 43.9 V, since DAC is at 4.387 V. Piezo Error = -9.6 V.
17-03-17 22:51:21.558 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.6 um, Read 10 ADC samples: Avg = 29776 (-130.8 uncal um), Error = 0.8 uncal um, Median = 29776 (-130.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29772 (-130.8 uncal um), Max = 29784 (-130.9 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 22:51:21.558 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29776, posNoise = 8, negNoise = 4
17-03-17 22:51:21.558 -07 000000610 INF: Z Motor: After move to -0.131609, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:51:21.558 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 22:51:21.558 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:51:21.558 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:51:21.558 -07 000000482 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:51:21.558 -07 000000486 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:51:21.558 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:51:21.558 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:51:21.558 -07 000000627 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:51:21.558 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:51:21.558 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 22:51:21.558 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:51:21.558 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-17 22:51:21.558 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:51:21.568 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:51:21.568 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:51:21.568 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 22:51:21.568 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:51:21.578 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 12 ms.
17-03-17 22:51:21.578 -07 000000627 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 22:51:21.578 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 13 ms.
17-03-17 22:51:21.578 -07 000000486 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 22:51:21.578 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 461 461 222 222 28927 150\n [Camera]
17-03-17 22:51:21.778 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP turning red on 194
17-03-17 22:51:22.008 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:51:22.008 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 67. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1078, R2=1105, Total=2183. Warn if over 250 bubbles per interval.
17-03-17 22:51:22.238 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 653
17-03-17 22:51:22.238 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 653
17-03-17 22:51:22.238 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:51:22.248 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 653
17-03-17 22:51:22.248 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 653
17-03-17 22:51:22.248 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:51:22.248 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:51:22.248 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-17 22:51:22.248 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:51:22.248 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 22:51:22.438 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28927 846
17-03-17 22:51:22.578 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning grn on 996
17-03-17 22:51:22.628 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 385 ms.
17-03-17 22:51:22.628 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 22:51:22.628 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:51:22.638 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 383 ms.
17-03-17 22:51:22.638 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-17 22:51:22.638 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:51:22.638 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:51:22.638 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 22:51:22.638 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:51:22.648 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 22:51:22.808 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1218
17-03-17 22:51:22.808 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1218
17-03-17 22:51:22.808 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:51:22.808 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1218
17-03-17 22:51:22.808 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1218
17-03-17 22:51:22.808 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:51:22.818 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:51:22.818 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-17 22:51:22.818 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:51:22.818 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 22:51:22.998 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP 1411
17-03-17 22:51:22.998 -07 000000501 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:51:22.998 -07 000000610 INF: FPGA: 'CAMDBLSNAP 461 461 222 222 28927 150' command took 2 ms to send, 1414 ms to get response, and 1417 ms overall
17-03-17 22:51:22.998 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 22:51:22.998 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.87890625, Z-Position -0.131610692744209. ------
17-03-17 22:51:22.998 -07 000000541 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:51:22.998 -07 000000462 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.13825 mm
17-03-17 22:51:22.998 -07 000000462 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:51:23.008 -07 000000448 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-17 22:51:23.008 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:51:23.008 -07 000000448 INF: Y Motor: Moving to 65.7226 mm, started at 64.8789 mm, delta = 0.8437 mm
17-03-17 22:51:23.008 -07 000000541 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 22:51:23.008 -07 000000448 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:51:23.008 -07 000000627 INF: Z Motor: Entering MoveAbsStepped (DAC = 30201, sync = True, waitForSettling = False)
17-03-17 22:51:23.118 -07 000000627 INF: Z Motor: Moving to -0.138251 mm, started at -0.131611 mm, distance = -6.64 um
17-03-17 22:51:23.118 -07 000000551 INF: FPGA: Recv YRDPOS 132873
17-03-17 22:51:23.118 -07 000000448 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 116 ms overall
17-03-17 22:51:23.118 -07 000000448 INF: Y Motor: Encoder = 132873 = motor step 103807.0 = 64.8794 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:51:23.118 -07 000000541 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:51:23.128 -07 000000627 INF: FPGA: Xmit ZDACW 30201\n [Z Motor]
17-03-17 22:51:23.128 -07 000000623 INF: FPGA: Recv ZDACW
17-03-17 22:51:23.128 -07 000000448 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:51:23.128 -07 000000448 INF: Y Motor: Moving 1349 steps-28
17-03-17 22:51:23.138 -07 000000627 INF: FPGA: 'ZDACW 30201' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 22:51:23.138 -07 000000627 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:51:23.138 -07 000000593 INF: FPGA: Recv ZDACR 30201
17-03-17 22:51:23.148 -07 000000627 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:23.148 -07 000000627 INF: Z Motor: MoveAbsStepped took 22 ms (did NOT wait for settling yet))
17-03-17 22:51:23.148 -07 000000448 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:51:23.208 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 396 ms.
17-03-17 22:51:23.208 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 22:51:23.208 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:51:23.208 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 395 ms.
17-03-17 22:51:23.208 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 22:51:23.208 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:51:23.218 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:51:23.218 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-17 22:51:23.218 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:51:23.218 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-17 22:51:23.328 -07 000000627 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:51:23.328 -07 000000541 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 202 ms to get response, and 319 ms overall
17-03-17 22:51:23.518 -07 000000618 INF: FPGA: Recv YMVTILE
17-03-17 22:51:23.518 -07 000000448 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-17 22:51:23.558 -07 000000448 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:51:23.568 -07 000000623 INF: FPGA: Recv YRDPOS 134583
17-03-17 22:51:23.568 -07 000000448 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 22:51:23.568 -07 000000448 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:51:23.568 -07 000000448 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-17 22:51:23.568 -07 000000448 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.844 mm, average velocity = 2.141 mm/sec
17-03-17 22:51:24.518 -07 000000448 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:51:24.518 -07 000000551 INF: FPGA: Recv YRDPOS 134583
17-03-17 22:51:24.528 -07 000000448 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:24.528 -07 000000448 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:51:24.548 -07 000000448 INF: Y Motor: After move to 65.722610, error = -0.008255, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:51:24.548 -07 000000448 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:51:24.548 -07 000000448 INF: Y Motor: Moved to 65.7144 after 1544 ms (table move)
17-03-17 22:51:24.558 -07 000000462 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138251 mm (DAC = 30201)
17-03-17 22:51:24.558 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:24.558 -07 000000382 INF: FPGA: Recv ZSGSRD 30815
17-03-17 22:51:24.568 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:24.568 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:24.568 -07 000000593 INF: FPGA: Recv ZSGSRD 30814
17-03-17 22:51:24.578 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:24.578 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:24.578 -07 000000409 INF: FPGA: Recv ZSGSRD 30815
17-03-17 22:51:24.588 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:24.588 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:24.588 -07 000000627 INF: FPGA: Recv ZSGSRD 30817
17-03-17 22:51:24.598 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:24.598 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:24.598 -07 000000502 INF: FPGA: Recv ZSGSRD 30810
17-03-17 22:51:24.608 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:24.608 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:24.608 -07 000000482 INF: FPGA: Recv ZSGSRD 30808
17-03-17 22:51:24.618 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:24.618 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:24.618 -07 000000415 INF: FPGA: Recv ZSGSRD 30809
17-03-17 22:51:24.628 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:24.628 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:24.628 -07 000000623 INF: FPGA: Recv ZSGSRD 30811
17-03-17 22:51:24.638 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:24.638 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:24.638 -07 000000409 INF: FPGA: Recv ZSGSRD 30816
17-03-17 22:51:24.648 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:24.648 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:24.648 -07 000000482 INF: FPGA: Recv ZSGSRD 30811
17-03-17 22:51:24.658 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:24.658 -07 000000462 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:51:24.658 -07 000000627 INF: FPGA: Recv ZPIEZORD 26792
17-03-17 22:51:24.668 -07 000000462 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:24.668 -07 000000462 INF: Z Motor: Piezo is near 37.2 V (nominally 0 to 100 V), expect near 46.1 V, since DAC is at 4.608 V. Piezo Error = -8.8 V.
17-03-17 22:51:24.668 -07 000000462 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.3 um, Read 10 ADC samples: Avg = 30813 (-137.5 uncal um), Error = 0.8 uncal um, Median = 30812 (-137.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 30808 (-137.4 uncal um), Max = 30817 (-137.5 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 22:51:24.668 -07 000000462 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30813, posNoise = 4, negNoise = 5
17-03-17 22:51:24.668 -07 000000462 INF: Z Motor: After move to -0.138251, error = -0.000021, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:51:24.668 -07 000000462 INF: Z Motor: Settle wait time = 1432 ms, measure time = 110 ms (allowed 150 ms), total time = 1542 ms
17-03-17 22:51:24.668 -07 000000462 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-17 22:51:24.708 -07 000000462 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1700 ms
17-03-17 22:51:24.708 -07 000000462 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:51:24.708 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:51:24.708 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:51:24.708 -07 000000541 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:51:24.708 -07 000000593 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:51:24.708 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:51:24.708 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:51:24.718 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:51:24.718 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:51:24.718 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:51:24.718 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:51:24.728 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 22:51:24.728 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 22:51:24.728 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:51:24.778 -07 000000576 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:51:24.968 -07 000000541 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:51:24.968 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:51:24.968 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:51:24.978 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 22:51:25.008 -07 000000627 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:51:25.018 -07 000000415 INF: FPGA: Recv CAMSNAP
17-03-17 22:51:25.018 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 286 ms overall
17-03-17 22:51:25.088 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 22:51:25.088 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:51:25.088 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:51:25.088 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 22:51:25.118 -07 000000541 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:51:25.118 -07 000000576 INF: Autofocus start
17-03-17 22:51:25.118 -07 000000576 INF: MeasureProfile start
17-03-17 22:51:25.118 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:51:25.128 -07 000000541 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 22:51:25.128 -07 000000541 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:51:25.128 -07 000000576 INF: MeasureProfile done
17-03-17 22:51:25.128 -07 000000576 INF: X=0  Z correction [um]=-0.02394831
17-03-17 22:51:25.128 -07 000000576 INF: Autofocus finished
17-03-17 22:51:25.328 -07 000000547 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:51:25.358 -07 000000541 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 226 ms to get response, and 235 ms overall
17-03-17 22:51:25.378 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.71435546875, Z-position -0.138272600735215. ----------
17-03-17 22:51:25.378 -07 000000610 INF: Cycle	68	Tile	8	Exposure Settings		A	461	G	222	T	222	C	461
17-03-17 22:51:25.378 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28709, sync = True, waitForSettling = True)
17-03-17 22:51:25.378 -07 000000610 INF: Z Motor: Moving to -0.131421 mm, started at -0.138273 mm, distance = 6.85 um
17-03-17 22:51:25.378 -07 000000610 INF: FPGA: Xmit ZDACW 28709\n [Z Motor]
17-03-17 22:51:25.378 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 22:51:25.388 -07 000000610 INF: FPGA: 'ZDACW 28709' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:51:25.388 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:51:25.388 -07 000000541 INF: FPGA: Recv ZDACR 28709
17-03-17 22:51:25.398 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:25.398 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:51:25.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:25.548 -07 000000502 INF: FPGA: Recv ZSGSRD 29744
17-03-17 22:51:25.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:51:25.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:25.558 -07 000000478 INF: FPGA: Recv ZSGSRD 29751
17-03-17 22:51:25.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:25.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:25.568 -07 000000593 INF: FPGA: Recv ZSGSRD 29745
17-03-17 22:51:25.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:25.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:25.578 -07 000000623 INF: FPGA: Recv ZSGSRD 29742
17-03-17 22:51:25.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:25.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:25.588 -07 000000541 INF: FPGA: Recv ZSGSRD 29753
17-03-17 22:51:25.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:25.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:25.598 -07 000000448 INF: FPGA: Recv ZSGSRD 29746
17-03-17 22:51:25.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:25.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:25.608 -07 000000415 INF: FPGA: Recv ZSGSRD 29748
17-03-17 22:51:25.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:25.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:25.618 -07 000000409 INF: FPGA: Recv ZSGSRD 29748
17-03-17 22:51:25.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:25.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:25.628 -07 000000501 INF: FPGA: Recv ZSGSRD 29742
17-03-17 22:51:25.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:25.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:25.638 -07 000000593 INF: FPGA: Recv ZSGSRD 29750
17-03-17 22:51:25.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:25.648 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:51:25.648 -07 000000623 INF: FPGA: Recv ZPIEZORD 25380
17-03-17 22:51:25.658 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:25.658 -07 000000610 INF: Z Motor: Piezo is near 34.2 V (nominally 0 to 100 V), expect near 43.8 V, since DAC is at 4.381 V. Piezo Error = -9.6 V.
17-03-17 22:51:25.658 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.4 um, Read 10 ADC samples: Avg = 29747 (-130.6 uncal um), Error = 0.8 uncal um, Median = 29747 (-130.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29742 (-130.6 uncal um), Max = 29753 (-130.7 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 22:51:25.658 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29747, posNoise = 6, negNoise = 5
17-03-17 22:51:25.658 -07 000000610 INF: Z Motor: After move to -0.131421, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:51:25.658 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 22:51:25.658 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:51:25.658 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:51:25.658 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:51:25.658 -07 000000541 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:51:25.658 -07 000000627 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:51:25.658 -07 000000415 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:51:25.658 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:51:25.658 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:51:25.658 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:51:25.658 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:51:25.658 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:51:25.658 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:51:25.668 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:51:25.668 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:51:25.668 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:51:25.668 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:51:25.678 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 22:51:25.678 -07 000000627 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 22:51:25.678 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 22:51:25.678 -07 000000415 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 22:51:25.678 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 461 461 222 222 28885 150\n [Camera]
17-03-17 22:51:25.878 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP turning red on 193
17-03-17 22:51:26.338 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 653
17-03-17 22:51:26.348 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 653
17-03-17 22:51:26.348 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:51:26.348 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 653
17-03-17 22:51:26.348 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 653
17-03-17 22:51:26.348 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:51:26.348 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:51:26.348 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-17 22:51:26.348 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:51:26.348 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 22:51:26.538 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28885 846
17-03-17 22:51:26.688 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning grn on 996
17-03-17 22:51:26.708 -07 000000547 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 68, FrontChillerTemperature: 3.99219,
17-03-17 22:51:26.738 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 387 ms.
17-03-17 22:51:26.738 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 22:51:26.738 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:51:26.738 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 391 ms.
17-03-17 22:51:26.738 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 22:51:26.738 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:51:26.748 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 22:51:26.748 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 22:51:26.748 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 22:51:26.748 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-17 22:51:26.908 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1218
17-03-17 22:51:26.908 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1218
17-03-17 22:51:26.908 -07 000000409 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:51:26.908 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1218
17-03-17 22:51:26.908 -07 000000409 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:51:26.908 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1218
17-03-17 22:51:26.908 -07 000000409 INF: Camera: sBCa_ReadImage(785074288, 656674232, 0x0, 391868352) start.
17-03-17 22:51:26.908 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:51:26.908 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:51:26.908 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2334002848, 0x0, 418435064) start.
17-03-17 22:51:27.008 -07 000000415 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:51:27.008 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 67. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1078, R2=1105, Total=2183. Warn if over 250 bubbles per interval.
17-03-17 22:51:27.098 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP 1410
17-03-17 22:51:27.098 -07 000000502 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:51:27.098 -07 000000610 INF: FPGA: 'CAMDBLSNAP 461 461 222 222 28885 150' command took 2 ms to send, 1406 ms to get response, and 1417 ms overall
17-03-17 22:51:27.108 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 22:51:27.108 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.71435546875, Z-Position -0.131424390592098. ------
17-03-17 22:51:27.108 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:51:27.108 -07 000000448 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.13775 mm
17-03-17 22:51:27.108 -07 000000448 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:51:27.108 -07 000000462 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-17 22:51:27.108 -07 000000462 INF: Y Motor: Moving to 66.5526 mm, started at 65.7144 mm, delta = 0.8382 mm
17-03-17 22:51:27.108 -07 000000593 INF: Z Motor: Entering MoveAbsStepped (DAC = 30090, sync = True, waitForSettling = False)
17-03-17 22:51:27.108 -07 000000593 INF: Z Motor: Moving to -0.137743 mm, started at -0.131424 mm, distance = -6.32 um
17-03-17 22:51:27.108 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:51:27.118 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:51:27.118 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:51:27.118 -07 000000547 INF: FPGA: Recv YRDPOS 134583
17-03-17 22:51:27.128 -07 000000593 INF: FPGA: Xmit ZDACW 30090\n [Z Motor]
17-03-17 22:51:27.128 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 22:51:27.128 -07 000000462 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:51:27.128 -07 000000462 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:51:27.128 -07 000000462 INF: Y Motor: Moving 1341 steps-17
17-03-17 22:51:27.128 -07 000000486 INF: FPGA: Recv ZDACW
17-03-17 22:51:27.138 -07 000000593 INF: FPGA: 'ZDACW 30090' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-17 22:51:27.138 -07 000000576 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:51:27.148 -07 000000462 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:51:27.158 -07 000000593 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:51:27.158 -07 000000482 INF: FPGA: Recv ZDACR 30090
17-03-17 22:51:27.168 -07 000000593 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:51:27.168 -07 000000593 INF: Z Motor: MoveAbsStepped took 53 ms (did NOT wait for settling yet))
17-03-17 22:51:27.308 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2334002848, 0x0, 418435064) end. Duration was 391 ms.
17-03-17 22:51:27.308 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 22:51:27.308 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:51:27.308 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:51:27.308 -07 000000409 INF: Camera: sBCa_ReadImage(785074288, 656674232, 0x0, 391868352) end. Duration was 396 ms.
17-03-17 22:51:27.308 -07 000000409 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 22:51:27.308 -07 000000409 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:51:27.308 -07 000000409 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:51:27.318 -07 000000409 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 22:51:27.318 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-17 22:51:27.338 -07 000000627 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:51:27.338 -07 000000576 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-17 22:51:27.518 -07 000000382 INF: FPGA: Recv YMVTILE
17-03-17 22:51:27.518 -07 000000462 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 22:51:27.558 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:51:27.568 -07 000000576 INF: FPGA: Recv YRDPOS 136272
17-03-17 22:51:27.568 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 22:51:27.568 -07 000000462 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:51:27.568 -07 000000462 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 22:51:27.568 -07 000000462 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.838 mm, average velocity = 2.111 mm/sec
17-03-17 22:51:28.518 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:51:28.518 -07 000000478 INF: FPGA: Recv YRDPOS 136273
17-03-17 22:51:28.528 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:28.528 -07 000000462 INF: Y Motor: Encoder = 136273 = motor step 106463.3 = 66.5396 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:51:28.548 -07 000000462 INF: Y Motor: After move to 66.552605, error = -0.013054, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:51:28.548 -07 000000462 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 22:51:28.548 -07 000000462 INF: Y Motor: Moved to 66.5396 after 1440 ms (table move)
17-03-17 22:51:28.558 -07 000000448 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137743 mm (DAC = 30090)
17-03-17 22:51:28.558 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:28.558 -07 000000415 INF: FPGA: Recv ZSGSRD 30726
17-03-17 22:51:28.568 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:51:28.568 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:28.568 -07 000000502 INF: FPGA: Recv ZSGSRD 30730
17-03-17 22:51:28.578 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:28.578 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:28.578 -07 000000482 INF: FPGA: Recv ZSGSRD 30733
17-03-17 22:51:28.588 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:28.588 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:28.588 -07 000000409 INF: FPGA: Recv ZSGSRD 30735
17-03-17 22:51:28.598 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:28.598 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:28.598 -07 000000415 INF: FPGA: Recv ZSGSRD 30742
17-03-17 22:51:28.608 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:28.608 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:28.608 -07 000000576 INF: FPGA: Recv ZSGSRD 30729
17-03-17 22:51:28.618 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:28.618 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:28.618 -07 000000478 INF: FPGA: Recv ZSGSRD 30735
17-03-17 22:51:28.628 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:28.628 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:28.628 -07 000000486 INF: FPGA: Recv ZSGSRD 30724
17-03-17 22:51:28.638 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:28.638 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:28.638 -07 000000541 INF: FPGA: Recv ZSGSRD 30732
17-03-17 22:51:28.648 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:28.648 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:28.648 -07 000000623 INF: FPGA: Recv ZSGSRD 30740
17-03-17 22:51:28.658 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:28.658 -07 000000448 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:51:28.658 -07 000000547 INF: FPGA: Recv ZPIEZORD 26709
17-03-17 22:51:28.668 -07 000000448 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:28.668 -07 000000448 INF: Z Motor: Piezo is near 37.1 V (nominally 0 to 100 V), expect near 45.9 V, since DAC is at 4.591 V. Piezo Error = -8.9 V.
17-03-17 22:51:28.668 -07 000000448 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.7 um, Read 10 ADC samples: Avg = 30733 (-137.0 uncal um), Error = 0.8 uncal um, Median = 30732 (-137.0 uncal um), StdDev = 6 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 30724 (-136.9 uncal um), Max = 30742 (-137.0 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 22:51:28.668 -07 000000448 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30733, posNoise = 9, negNoise = 9
17-03-17 22:51:28.668 -07 000000448 INF: Z Motor: After move to -0.137743, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:51:28.668 -07 000000448 INF: Z Motor: Settle wait time = 1443 ms, measure time = 111 ms (allowed 150 ms), total time = 1554 ms
17-03-17 22:51:28.668 -07 000000448 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-17 22:51:28.708 -07 000000448 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1596 ms
17-03-17 22:51:28.708 -07 000000448 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:51:28.708 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:51:28.708 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:51:28.708 -07 000000623 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:51:28.708 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:51:28.708 -07 000000478 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:51:28.708 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:51:28.708 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 22:51:28.708 -07 000000478 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:51:28.708 -07 000000478 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:51:28.708 -07 000000478 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:51:28.718 -07 000000478 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 22:51:28.718 -07 000000478 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 22:51:28.728 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:51:28.768 -07 000000462 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:51:28.968 -07 000000623 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:51:28.968 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:51:28.968 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:51:28.968 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2268957512, 0x0, 559484976) start.
17-03-17 22:51:29.008 -07 000000462 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:51:29.008 -07 000000448 INF: FPGA: Recv CAMSNAP
17-03-17 22:51:29.008 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 284 ms overall
17-03-17 22:51:29.088 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2268957512, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 22:51:29.088 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:51:29.088 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 22:51:29.088 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 22:51:29.108 -07 000000576 INF: Autofocus start
17-03-17 22:51:29.108 -07 000000576 INF: MeasureProfile start
17-03-17 22:51:29.108 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:51:29.108 -07 000000478 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:51:29.118 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:51:29.118 -07 000000382 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:51:29.118 -07 000000576 INF: MeasureProfile done
17-03-17 22:51:29.118 -07 000000576 INF: X=9  Z correction [um]=0.01934518
17-03-17 22:51:29.118 -07 000000576 INF: Autofocus finished
17-03-17 22:51:29.318 -07 000000478 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:51:29.318 -07 000000382 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-17 22:51:29.318 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.53955078125, Z-position -0.137758663763874. ----------
17-03-17 22:51:29.318 -07 000000610 INF: Cycle	68	Tile	9	Exposure Settings		A	461	G	222	T	222	C	461
17-03-17 22:51:29.328 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28607, sync = True, waitForSettling = True)
17-03-17 22:51:29.328 -07 000000610 INF: Z Motor: Moving to -0.130954 mm, started at -0.137759 mm, distance = 6.80 um
17-03-17 22:51:29.328 -07 000000610 INF: FPGA: Xmit ZDACW 28607\n [Z Motor]
17-03-17 22:51:29.328 -07 000000623 INF: FPGA: Recv ZDACW
17-03-17 22:51:29.338 -07 000000610 INF: FPGA: 'ZDACW 28607' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:51:29.338 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:51:29.338 -07 000000541 INF: FPGA: Recv ZDACR 28607
17-03-17 22:51:29.348 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:29.348 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:51:29.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:29.498 -07 000000482 INF: FPGA: Recv ZSGSRD 29674
17-03-17 22:51:29.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:29.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:29.508 -07 000000415 INF: FPGA: Recv ZSGSRD 29672
17-03-17 22:51:29.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:51:29.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:29.518 -07 000000618 INF: FPGA: Recv ZSGSRD 29670
17-03-17 22:51:29.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:29.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:29.528 -07 000000478 INF: FPGA: Recv ZSGSRD 29674
17-03-17 22:51:29.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:29.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:29.538 -07 000000627 INF: FPGA: Recv ZSGSRD 29674
17-03-17 22:51:29.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:29.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:29.548 -07 000000409 INF: FPGA: Recv ZSGSRD 29671
17-03-17 22:51:29.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:29.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:29.558 -07 000000448 INF: FPGA: Recv ZSGSRD 29680
17-03-17 22:51:29.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:29.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:29.568 -07 000000593 INF: FPGA: Recv ZSGSRD 29675
17-03-17 22:51:29.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:29.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:29.578 -07 000000551 INF: FPGA: Recv ZSGSRD 29676
17-03-17 22:51:29.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:29.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:29.588 -07 000000486 INF: FPGA: Recv ZSGSRD 29671
17-03-17 22:51:29.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:29.598 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:51:29.598 -07 000000502 INF: FPGA: Recv ZPIEZORD 25308
17-03-17 22:51:29.608 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:29.608 -07 000000610 INF: Z Motor: Piezo is near 34.1 V (nominally 0 to 100 V), expect near 43.7 V, since DAC is at 4.365 V. Piezo Error = -9.6 V.
17-03-17 22:51:29.608 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.0 um, Read 10 ADC samples: Avg = 29674 (-130.2 uncal um), Error = 0.8 uncal um, Median = 29674 (-130.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29670 (-130.1 uncal um), Max = 29680 (-130.2 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 22:51:29.608 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29674, posNoise = 6, negNoise = 4
17-03-17 22:51:29.608 -07 000000610 INF: Z Motor: After move to -0.130954, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:51:29.608 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 22:51:29.608 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:51:29.608 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:51:29.608 -07 000000593 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:51:29.608 -07 000000415 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:51:29.608 -07 000000486 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:51:29.608 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:51:29.608 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:51:29.608 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:51:29.608 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:51:29.608 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:51:29.608 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:51:29.608 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:51:29.608 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:51:29.608 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:51:29.618 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:51:29.618 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:51:29.618 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 22:51:29.618 -07 000000486 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 22:51:29.618 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 22:51:29.628 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 22:51:29.628 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 461 461 222 222 28784 150\n [Camera]
17-03-17 22:51:29.828 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:51:30.288 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 653
17-03-17 22:51:30.288 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 653
17-03-17 22:51:30.288 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:51:30.288 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:51:30.288 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 2378235720, 0x0, 391868352) start.
17-03-17 22:51:30.288 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 653
17-03-17 22:51:30.288 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 653
17-03-17 22:51:30.288 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:51:30.288 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:51:30.288 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-17 22:51:30.478 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28784 846
17-03-17 22:51:30.628 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning grn on 996
17-03-17 22:51:30.668 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 2378235720, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 22:51:30.668 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 22:51:30.668 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:51:30.668 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 22:51:30.668 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 22:51:30.668 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:51:30.678 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 22:51:30.678 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 22:51:30.678 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 22:51:30.678 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 22:51:30.848 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1218
17-03-17 22:51:30.848 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1218
17-03-17 22:51:30.858 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:51:30.858 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:51:30.858 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start.
17-03-17 22:51:30.858 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1218
17-03-17 22:51:30.858 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1218
17-03-17 22:51:30.858 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:51:30.858 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:51:30.858 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 1165594328, 0x0, 418435064) start.
17-03-17 22:51:31.048 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP 1411
17-03-17 22:51:31.048 -07 000000382 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:51:31.048 -07 000000610 INF: FPGA: 'CAMDBLSNAP 461 461 222 222 28784 150' command took 2 ms to send, 1411 ms to get response, and 1418 ms overall
17-03-17 22:51:31.158 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 22:51:31.158 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.53955078125, Z-Position -0.13095542310575. ------
17-03-17 22:51:31.168 -07 000000551 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:51:31.168 -07 000000576 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.13773 mm
17-03-17 22:51:31.168 -07 000000576 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:51:31.168 -07 000000478 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-17 22:51:31.168 -07 000000478 INF: Y Motor: Moving to 67.3826 mm, started at 66.5396 mm, delta = 0.8431 mm
17-03-17 22:51:31.168 -07 000000486 INF: Z Motor: Entering MoveAbsStepped (DAC = 30087, sync = True, waitForSettling = False)
17-03-17 22:51:31.168 -07 000000486 INF: Z Motor: Moving to -0.137729 mm, started at -0.130955 mm, distance = -6.77 um
17-03-17 22:51:31.168 -07 000000623 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:51:31.178 -07 000000551 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:51:31.178 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:51:31.178 -07 000000618 INF: FPGA: Recv YRDPOS 136273
17-03-17 22:51:31.188 -07 000000486 INF: FPGA: Xmit ZDACW 30087\n [Z Motor]
17-03-17 22:51:31.188 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 22:51:31.188 -07 000000478 INF: Y Motor: Encoder = 136273 = motor step 106463.3 = 66.5396 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:51:31.188 -07 000000478 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:51:31.188 -07 000000478 INF: Y Motor: Moving 1349 steps-28
17-03-17 22:51:31.188 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 22:51:31.198 -07 000000486 INF: FPGA: 'ZDACW 30087' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-17 22:51:31.198 -07 000000551 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:51:31.208 -07 000000478 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:51:31.218 -07 000000486 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:51:31.218 -07 000000409 INF: FPGA: Recv ZDACR 30087
17-03-17 22:51:31.228 -07 000000486 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:51:31.228 -07 000000486 INF: Z Motor: MoveAbsStepped took 53 ms (did NOT wait for settling yet))
17-03-17 22:51:31.248 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 399 ms.
17-03-17 22:51:31.258 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 22:51:31.258 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:51:31.258 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 1165594328, 0x0, 418435064) end. Duration was 399 ms.
17-03-17 22:51:31.258 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 22:51:31.258 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:51:31.258 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:51:31.258 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 22:51:31.258 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-17 22:51:31.268 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-17 22:51:31.398 -07 000000541 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:51:31.398 -07 000000551 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-17 22:51:31.578 -07 000000593 INF: FPGA: Recv YMVTILE
17-03-17 22:51:31.578 -07 000000478 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 398 ms overall
17-03-17 22:51:31.618 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:51:31.628 -07 000000462 INF: FPGA: Recv YRDPOS 137978
17-03-17 22:51:31.628 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 22:51:31.628 -07 000000478 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:51:31.628 -07 000000478 INF: Y Motor: Position error before settling (table move) = -22 encoder counts (-0.011 mm)
17-03-17 22:51:31.628 -07 000000478 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.843 mm, average velocity = 2.118 mm/sec
17-03-17 22:51:32.008 -07 000000551 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:51:32.008 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 67. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1078, R2=1105, Total=2183. Warn if over 250 bubbles per interval.
17-03-17 22:51:32.078 -07 000000415 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 68, FrontChillerTemperature: 4.018051,
17-03-17 22:51:32.578 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:51:32.578 -07 000000547 INF: FPGA: Recv YRDPOS 137978
17-03-17 22:51:32.588 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:51:32.588 -07 000000478 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:51:32.608 -07 000000478 INF: Y Motor: After move to 67.382607, error = -0.010536, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:51:32.608 -07 000000478 INF: Y Motor: Position error after settling (table move) = -22 encoder counts (-0.011 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:51:32.608 -07 000000478 INF: Y Motor: Moved to 67.3721 after 1439 ms (table move)
17-03-17 22:51:32.608 -07 000000576 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137729 mm (DAC = 30087)
17-03-17 22:51:32.608 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:32.618 -07 000000551 INF: FPGA: Recv ZSGSRD 30733
17-03-17 22:51:32.618 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 22:51:32.618 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:32.618 -07 000000409 INF: FPGA: Recv ZSGSRD 30737
17-03-17 22:51:32.628 -07 000000576 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:51:32.628 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:32.628 -07 000000541 INF: FPGA: Recv ZSGSRD 30736
17-03-17 22:51:32.638 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:32.638 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:32.638 -07 000000486 INF: FPGA: Recv ZSGSRD 30728
17-03-17 22:51:32.648 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:32.648 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:32.648 -07 000000462 INF: FPGA: Recv ZSGSRD 30728
17-03-17 22:51:32.658 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:32.658 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:32.658 -07 000000409 INF: FPGA: Recv ZSGSRD 30738
17-03-17 22:51:32.668 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:32.668 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:32.668 -07 000000482 INF: FPGA: Recv ZSGSRD 30729
17-03-17 22:51:32.678 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:32.678 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:32.678 -07 000000486 INF: FPGA: Recv ZSGSRD 30736
17-03-17 22:51:32.688 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:32.688 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:32.688 -07 000000547 INF: FPGA: Recv ZSGSRD 30722
17-03-17 22:51:32.698 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:32.698 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:32.698 -07 000000448 INF: FPGA: Recv ZSGSRD 30725
17-03-17 22:51:32.708 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:32.708 -07 000000576 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:51:32.708 -07 000000415 INF: FPGA: Recv ZPIEZORD 26657
17-03-17 22:51:32.718 -07 000000576 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:32.718 -07 000000576 INF: Z Motor: Piezo is near 36.9 V (nominally 0 to 100 V), expect near 45.9 V, since DAC is at 4.591 V. Piezo Error = -9.0 V.
17-03-17 22:51:32.718 -07 000000576 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.7 um, Read 10 ADC samples: Avg = 30731 (-136.9 uncal um), Error = 0.8 uncal um, Median = 30731 (-136.9 uncal um), StdDev = 6 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 30722 (-136.9 uncal um), Max = 30738 (-137.0 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 22:51:32.718 -07 000000576 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30731, posNoise = 7, negNoise = 9
17-03-17 22:51:32.718 -07 000000576 INF: Z Motor: After move to -0.137729, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:51:32.718 -07 000000576 INF: Z Motor: Settle wait time = 1442 ms, measure time = 102 ms (allowed 150 ms), total time = 1544 ms
17-03-17 22:51:32.718 -07 000000576 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 22:51:32.768 -07 000000576 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1596 ms
17-03-17 22:51:32.768 -07 000000576 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:51:32.768 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:51:32.768 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:51:32.768 -07 000000541 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:51:32.768 -07 000000409 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:51:32.768 -07 000000409 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:51:32.768 -07 000000448 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:51:32.768 -07 000000409 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 22:51:32.768 -07 000000409 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:51:32.778 -07 000000409 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:51:32.778 -07 000000409 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:51:32.778 -07 000000409 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 22:51:32.778 -07 000000409 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-17 22:51:32.788 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:51:32.828 -07 000000409 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:51:33.028 -07 000000462 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:51:33.028 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:51:33.028 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:51:33.028 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 22:51:33.068 -07 000000448 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:51:33.068 -07 000000623 INF: FPGA: Recv CAMSNAP
17-03-17 22:51:33.068 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 285 ms overall
17-03-17 22:51:33.148 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 22:51:33.148 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:51:33.148 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:51:33.148 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 22:51:33.168 -07 000000486 INF: Autofocus start
17-03-17 22:51:33.168 -07 000000486 INF: MeasureProfile start
17-03-17 22:51:33.168 -07 000000627 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:51:33.168 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:51:33.178 -07 000000627 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 22:51:33.178 -07 000000627 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:51:33.178 -07 000000486 INF: MeasureProfile done
17-03-17 22:51:33.178 -07 000000486 INF: X=0  Z correction [um]=-0.02394831
17-03-17 22:51:33.178 -07 000000486 INF: Autofocus finished
17-03-17 22:51:33.378 -07 000000415 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:51:33.378 -07 000000627 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 203 ms overall
17-03-17 22:51:33.378 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.3720703125, Z-position -0.137745815339591. ----------
17-03-17 22:51:33.378 -07 000000610 INF: Cycle	68	Tile	10	Exposure Settings		A	461	G	222	T	222	C	461
17-03-17 22:51:33.388 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28595, sync = True, waitForSettling = True)
17-03-17 22:51:33.388 -07 000000610 INF: Z Motor: Moving to -0.130900 mm, started at -0.137746 mm, distance = 6.85 um
17-03-17 22:51:33.388 -07 000000610 INF: FPGA: Xmit ZDACW 28595\n [Z Motor]
17-03-17 22:51:33.388 -07 000000593 INF: FPGA: Recv ZDACW
17-03-17 22:51:33.398 -07 000000610 INF: FPGA: 'ZDACW 28595' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:51:33.398 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:51:33.398 -07 000000462 INF: FPGA: Recv ZDACR 28595
17-03-17 22:51:33.408 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:33.408 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:51:33.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:33.558 -07 000000502 INF: FPGA: Recv ZSGSRD 29670
17-03-17 22:51:33.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:33.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:33.568 -07 000000409 INF: FPGA: Recv ZSGSRD 29668
17-03-17 22:51:33.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:33.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:33.578 -07 000000576 INF: FPGA: Recv ZSGSRD 29665
17-03-17 22:51:33.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:33.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:33.588 -07 000000623 INF: FPGA: Recv ZSGSRD 29665
17-03-17 22:51:33.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:33.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:33.598 -07 000000618 INF: FPGA: Recv ZSGSRD 29669
17-03-17 22:51:33.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:33.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:33.608 -07 000000541 INF: FPGA: Recv ZSGSRD 29671
17-03-17 22:51:33.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:33.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:33.618 -07 000000593 INF: FPGA: Recv ZSGSRD 29663
17-03-17 22:51:33.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:33.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:33.628 -07 000000415 INF: FPGA: Recv ZSGSRD 29666
17-03-17 22:51:33.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:33.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:33.638 -07 000000448 INF: FPGA: Recv ZSGSRD 29673
17-03-17 22:51:33.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:33.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:33.648 -07 000000382 INF: FPGA: Recv ZSGSRD 29663
17-03-17 22:51:33.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:33.658 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:51:33.658 -07 000000541 INF: FPGA: Recv ZPIEZORD 25273
17-03-17 22:51:33.668 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:33.668 -07 000000610 INF: Z Motor: Piezo is near 34.0 V (nominally 0 to 100 V), expect near 43.6 V, since DAC is at 4.363 V. Piezo Error = -9.6 V.
17-03-17 22:51:33.668 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.9 um, Read 10 ADC samples: Avg = 29667 (-130.1 uncal um), Error = 0.8 uncal um, Median = 29667 (-130.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29663 (-130.1 uncal um), Max = 29673 (-130.2 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 22:51:33.668 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29667, posNoise = 6, negNoise = 4
17-03-17 22:51:33.668 -07 000000610 INF: Z Motor: After move to -0.130900, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:51:33.668 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 22:51:33.668 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:51:33.668 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:51:33.668 -07 000000415 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:51:33.668 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:51:33.668 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:51:33.668 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:51:33.668 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:51:33.668 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:51:33.668 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:51:33.668 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:51:33.668 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:51:33.668 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:51:33.678 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:51:33.678 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:51:33.678 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:51:33.678 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:51:33.688 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 22:51:33.688 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 22:51:33.688 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 22:51:33.688 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 22:51:33.688 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 461 461 222 222 28771 150\n [Camera]
17-03-17 22:51:33.888 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:51:34.348 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 653
17-03-17 22:51:34.348 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 653
17-03-17 22:51:34.348 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:51:34.348 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 653
17-03-17 22:51:34.348 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 653
17-03-17 22:51:34.348 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:51:34.348 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:51:34.348 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-17 22:51:34.358 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:51:34.358 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 22:51:34.538 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28771 846
17-03-17 22:51:34.688 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP turning grn on 996
17-03-17 22:51:34.728 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 368 ms.
17-03-17 22:51:34.728 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 369 ms.
17-03-17 22:51:34.728 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:51:34.728 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 375 ms.
17-03-17 22:51:34.728 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 375 ms.
17-03-17 22:51:34.728 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:51:34.728 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:51:34.728 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:51:34.728 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 22:51:34.738 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 22:51:34.908 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1218
17-03-17 22:51:34.908 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1218
17-03-17 22:51:34.908 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:51:34.918 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1218
17-03-17 22:51:34.918 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1218
17-03-17 22:51:34.918 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:51:34.918 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:51:34.918 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-17 22:51:34.918 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:51:34.918 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 22:51:35.098 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP 1411
17-03-17 22:51:35.108 -07 000000593 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:51:35.108 -07 000000610 INF: FPGA: 'CAMDBLSNAP 461 461 222 222 28771 150' command took 2 ms to send, 1410 ms to get response, and 1417 ms overall
17-03-17 22:51:35.108 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 22:51:35.108 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.3720703125, Z-Position -0.130910453620757. ------
17-03-17 22:51:35.108 -07 000000547 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:51:35.108 -07 000000409 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.13743 mm
17-03-17 22:51:35.108 -07 000000409 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:51:35.108 -07 000000576 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-17 22:51:35.108 -07 000000576 INF: Y Motor: Moving to 68.2126 mm, started at 67.3721 mm, delta = 0.8405 mm
17-03-17 22:51:35.228 -07 000000415 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:51:35.228 -07 000000547 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 121 ms overall
17-03-17 22:51:35.228 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:51:35.228 -07 000000502 INF: Z Motor: Entering MoveAbsStepped (DAC = 30022, sync = True, waitForSettling = False)
17-03-17 22:51:35.228 -07 000000502 INF: Z Motor: Moving to -0.137432 mm, started at -0.130910 mm, distance = -6.52 um
17-03-17 22:51:35.228 -07 000000486 INF: FPGA: Recv YRDPOS 137979
17-03-17 22:51:35.238 -07 000000547 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:51:35.238 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:51:35.238 -07 000000576 INF: Y Motor: Encoder = 137979 = motor step 107796.1 = 67.3726 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:51:35.238 -07 000000576 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:51:35.238 -07 000000576 INF: Y Motor: Moving 1344 steps-22
17-03-17 22:51:35.248 -07 000000502 INF: FPGA: Xmit ZDACW 30022\n [Z Motor]
17-03-17 22:51:35.248 -07 000000448 INF: FPGA: Recv ZDACW
17-03-17 22:51:35.258 -07 000000576 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:51:35.258 -07 000000502 INF: FPGA: 'ZDACW 30022' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-17 22:51:35.268 -07 000000502 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:51:35.268 -07 000000551 INF: FPGA: Recv ZDACR 30022
17-03-17 22:51:35.278 -07 000000502 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:51:35.278 -07 000000502 INF: Z Motor: MoveAbsStepped took 42 ms (did NOT wait for settling yet))
17-03-17 22:51:35.318 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 397 ms.
17-03-17 22:51:35.318 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 396 ms.
17-03-17 22:51:35.318 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 22:51:35.318 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:51:35.318 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 22:51:35.318 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:51:35.328 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:51:35.328 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:51:35.328 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-17 22:51:35.328 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-17 22:51:35.438 -07 000000448 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:51:35.438 -07 000000547 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 205 ms overall
17-03-17 22:51:35.628 -07 000000502 INF: FPGA: Recv YMVTILE
17-03-17 22:51:35.628 -07 000000576 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-17 22:51:35.668 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:51:35.678 -07 000000551 INF: FPGA: Recv YRDPOS 139684
17-03-17 22:51:35.678 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 4 ms to get response, and 6 ms overall
17-03-17 22:51:35.678 -07 000000576 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:51:35.678 -07 000000576 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-17 22:51:35.678 -07 000000576 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.841 mm, average velocity = 2.133 mm/sec
17-03-17 22:51:36.628 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:51:36.628 -07 000000593 INF: FPGA: Recv YRDPOS 139685
17-03-17 22:51:36.638 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:36.638 -07 000000576 INF: Y Motor: Encoder = 139685 = motor step 109128.9 = 68.2056 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:51:36.658 -07 000000576 INF: Y Motor: After move to 68.212608, error = -0.007042, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:51:36.658 -07 000000576 INF: Y Motor: Position error after settling (table move) = -14 encoder counts (-0.007 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 22:51:36.658 -07 000000576 INF: Y Motor: Moved to 68.2056 after 1544 ms (table move)
17-03-17 22:51:36.658 -07 000000409 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137432 mm (DAC = 30022)
17-03-17 22:51:36.658 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:36.658 -07 000000478 INF: FPGA: Recv ZSGSRD 30680
17-03-17 22:51:36.668 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 22:51:36.668 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:36.668 -07 000000478 INF: FPGA: Recv ZSGSRD 30680
17-03-17 22:51:36.678 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:36.678 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:36.678 -07 000000551 INF: FPGA: Recv ZSGSRD 30677
17-03-17 22:51:36.688 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:36.688 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:36.688 -07 000000627 INF: FPGA: Recv ZSGSRD 30688
17-03-17 22:51:36.698 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:36.698 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:36.698 -07 000000576 INF: FPGA: Recv ZSGSRD 30687
17-03-17 22:51:36.708 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:36.708 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:36.708 -07 000000541 INF: FPGA: Recv ZSGSRD 30691
17-03-17 22:51:36.718 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:36.718 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:36.718 -07 000000462 INF: FPGA: Recv ZSGSRD 30686
17-03-17 22:51:36.728 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:36.728 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:36.728 -07 000000551 INF: FPGA: Recv ZSGSRD 30673
17-03-17 22:51:36.738 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:36.738 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:36.738 -07 000000478 INF: FPGA: Recv ZSGSRD 30679
17-03-17 22:51:36.748 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:36.748 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:36.748 -07 000000502 INF: FPGA: Recv ZSGSRD 30680
17-03-17 22:51:36.758 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:36.758 -07 000000409 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:51:36.758 -07 000000462 INF: FPGA: Recv ZPIEZORD 26654
17-03-17 22:51:36.768 -07 000000409 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:36.768 -07 000000409 INF: Z Motor: Piezo is near 36.9 V (nominally 0 to 100 V), expect near 45.8 V, since DAC is at 4.581 V. Piezo Error = -8.9 V.
17-03-17 22:51:36.768 -07 000000409 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.4 um, Read 10 ADC samples: Avg = 30682 (-136.6 uncal um), Error = 0.8 uncal um, Median = 30680 (-136.6 uncal um), StdDev = 6 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 30673 (-136.6 uncal um), Max = 30691 (-136.7 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 22:51:36.768 -07 000000409 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30682, posNoise = 9, negNoise = 9
17-03-17 22:51:36.768 -07 000000409 INF: Z Motor: After move to -0.137432, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:51:36.768 -07 000000409 INF: Z Motor: Settle wait time = 1428 ms, measure time = 105 ms (allowed 150 ms), total time = 1533 ms
17-03-17 22:51:36.768 -07 000000409 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 22:51:36.818 -07 000000409 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1704 ms
17-03-17 22:51:36.818 -07 000000409 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:51:36.818 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:51:36.818 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:51:36.818 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:51:36.818 -07 000000541 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:51:36.818 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:51:36.818 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:51:36.828 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:51:36.828 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:51:36.828 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:51:36.828 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:51:36.838 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 22:51:36.838 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-17 22:51:36.838 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:51:36.888 -07 000000551 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:51:37.008 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:51:37.008 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 67. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1078, R2=1105, Total=2183. Warn if over 250 bubbles per interval.
17-03-17 22:51:37.088 -07 000000541 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:51:37.088 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:51:37.088 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:51:37.088 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 22:51:37.118 -07 000000551 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:51:37.118 -07 000000448 INF: FPGA: Recv CAMSNAP
17-03-17 22:51:37.118 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 284 ms overall
17-03-17 22:51:37.198 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 22:51:37.198 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:51:37.208 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:51:37.208 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-17 22:51:37.218 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:51:37.218 -07 000000551 INF: Autofocus start
17-03-17 22:51:37.218 -07 000000551 INF: MeasureProfile start
17-03-17 22:51:37.228 -07 000000486 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:51:37.228 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 22:51:37.228 -07 000000502 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:51:37.238 -07 000000551 INF: MeasureProfile done
17-03-17 22:51:37.238 -07 000000551 INF: X=-16  Z correction [um]=-0.08128808
17-03-17 22:51:37.238 -07 000000551 INF: Autofocus finished
17-03-17 22:51:37.428 -07 000000593 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:51:37.428 -07 000000502 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-17 22:51:37.438 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.20556640625, Z-position -0.137431028944645. ----------
17-03-17 22:51:37.438 -07 000000610 INF: Cycle	68	Tile	11	Exposure Settings		A	461	G	222	T	222	C	461
17-03-17 22:51:37.438 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28517, sync = True, waitForSettling = True)
17-03-17 22:51:37.438 -07 000000610 INF: Z Motor: Moving to -0.130542 mm, started at -0.137431 mm, distance = 6.89 um
17-03-17 22:51:37.448 -07 000000409 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 68, FrontChillerTemperature: 3.989471,
17-03-17 22:51:37.458 -07 000000610 INF: FPGA: Xmit ZDACW 28517\n [Z Motor]
17-03-17 22:51:37.458 -07 000000448 INF: FPGA: Recv ZDACW
17-03-17 22:51:37.468 -07 000000610 INF: FPGA: 'ZDACW 28517' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-17 22:51:37.478 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:51:37.478 -07 000000576 INF: FPGA: Recv ZDACR 28517
17-03-17 22:51:37.488 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:51:37.488 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:51:37.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:37.638 -07 000000448 INF: FPGA: Recv ZSGSRD 29609
17-03-17 22:51:37.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:51:37.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:37.648 -07 000000502 INF: FPGA: Recv ZSGSRD 29612
17-03-17 22:51:37.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:37.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:37.658 -07 000000382 INF: FPGA: Recv ZSGSRD 29606
17-03-17 22:51:37.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:37.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:37.668 -07 000000551 INF: FPGA: Recv ZSGSRD 29614
17-03-17 22:51:37.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:37.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:37.678 -07 000000593 INF: FPGA: Recv ZSGSRD 29607
17-03-17 22:51:37.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:37.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:37.688 -07 000000448 INF: FPGA: Recv ZSGSRD 29614
17-03-17 22:51:37.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:37.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:37.698 -07 000000576 INF: FPGA: Recv ZSGSRD 29612
17-03-17 22:51:37.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:37.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:37.708 -07 000000502 INF: FPGA: Recv ZSGSRD 29606
17-03-17 22:51:37.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:37.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:37.718 -07 000000382 INF: FPGA: Recv ZSGSRD 29611
17-03-17 22:51:37.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:37.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:37.728 -07 000000409 INF: FPGA: Recv ZSGSRD 29608
17-03-17 22:51:37.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:37.738 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:51:37.738 -07 000000618 INF: FPGA: Recv ZPIEZORD 25254
17-03-17 22:51:37.748 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:37.748 -07 000000610 INF: Z Motor: Piezo is near 33.9 V (nominally 0 to 100 V), expect near 43.5 V, since DAC is at 4.351 V. Piezo Error = -9.6 V.
17-03-17 22:51:37.748 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.5 um, Read 10 ADC samples: Avg = 29610 (-129.8 uncal um), Error = 0.8 uncal um, Median = 29610 (-129.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29606 (-129.7 uncal um), Max = 29614 (-129.8 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 22:51:37.748 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29610, posNoise = 4, negNoise = 4
17-03-17 22:51:37.748 -07 000000610 INF: Z Motor: After move to -0.130542, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:51:37.748 -07 000000610 INF: Z Motor: MoveAbsStepped took 308 ms)
17-03-17 22:51:37.748 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:51:37.748 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:51:37.748 -07 000000551 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:51:37.748 -07 000000547 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:51:37.748 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:51:37.748 -07 000000486 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:51:37.748 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:51:37.748 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 22:51:37.748 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:51:37.748 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:51:37.748 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:51:37.748 -07 000000478 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:51:37.758 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 22:51:37.758 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:51:37.758 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 22:51:37.758 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:51:37.768 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 22:51:37.768 -07 000000547 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 22:51:37.768 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 22:51:37.768 -07 000000486 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 22:51:37.778 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 461 461 222 222 28694 150\n [Camera]
17-03-17 22:51:37.968 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:51:38.438 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 653
17-03-17 22:51:38.438 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 653
17-03-17 22:51:38.438 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:51:38.438 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 653
17-03-17 22:51:38.438 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 653
17-03-17 22:51:38.438 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:51:38.438 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:51:38.438 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-17 22:51:38.448 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:51:38.448 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 22:51:38.628 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28694 846
17-03-17 22:51:38.778 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning grn on 999
17-03-17 22:51:38.828 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 385 ms.
17-03-17 22:51:38.828 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 22:51:38.828 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:51:38.828 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 383 ms.
17-03-17 22:51:38.828 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-17 22:51:38.828 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:51:38.828 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:51:38.828 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 22:51:38.828 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:51:38.838 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 22:51:38.998 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1218
17-03-17 22:51:38.998 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1218
17-03-17 22:51:38.998 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:51:38.998 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:51:38.998 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 656674232, 0x0, 391868352) start.
17-03-17 22:51:38.998 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1218
17-03-17 22:51:38.998 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1218
17-03-17 22:51:39.008 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:51:39.008 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:51:39.008 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 2334002848, 0x0, 418435064) start.
17-03-17 22:51:39.188 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP 1411
17-03-17 22:51:39.188 -07 000000623 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:51:39.188 -07 000000610 INF: FPGA: 'CAMDBLSNAP 461 461 222 222 28694 150' command took 2 ms to send, 1408 ms to get response, and 1422 ms overall
17-03-17 22:51:39.198 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 22:51:39.198 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.20556640625, Z-Position -0.130544273528677. ------
17-03-17 22:51:39.198 -07 000000415 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:51:39.198 -07 000000486 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.13716 mm
17-03-17 22:51:39.198 -07 000000486 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:51:39.198 -07 000000551 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-17 22:51:39.198 -07 000000551 INF: Y Motor: Moving to 69.0426 mm, started at 68.2056 mm, delta = 0.8370 mm
17-03-17 22:51:39.198 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:51:39.198 -07 000000541 INF: Z Motor: Entering MoveAbsStepped (DAC = 29963, sync = True, waitForSettling = False)
17-03-17 22:51:39.198 -07 000000541 INF: Z Motor: Moving to -0.137162 mm, started at -0.130544 mm, distance = -6.62 um
17-03-17 22:51:39.208 -07 000000415 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 22:51:39.208 -07 000000541 INF: FPGA: Xmit ZDACW 29963\n [Z Motor]
17-03-17 22:51:39.208 -07 000000576 INF: FPGA: Recv ZDACW
17-03-17 22:51:39.218 -07 000000541 INF: FPGA: 'ZDACW 29963' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:51:39.218 -07 000000415 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:51:39.228 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:51:39.228 -07 000000382 INF: FPGA: Recv YRDPOS 139685
17-03-17 22:51:39.238 -07 000000541 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:51:39.238 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 31 ms overall
17-03-17 22:51:39.238 -07 000000551 INF: Y Motor: Encoder = 139685 = motor step 109128.9 = 68.2056 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:51:39.238 -07 000000551 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:51:39.238 -07 000000551 INF: Y Motor: Moving 1339 steps-15
17-03-17 22:51:39.238 -07 000000627 INF: FPGA: Recv ZDACR 29963
17-03-17 22:51:39.248 -07 000000541 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:51:39.248 -07 000000541 INF: Z Motor: MoveAbsStepped took 40 ms (did NOT wait for settling yet))
17-03-17 22:51:39.248 -07 000000551 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:51:39.408 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 656674232, 0x0, 391868352) end. Duration was 402 ms.
17-03-17 22:51:39.408 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 22:51:39.408 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:51:39.408 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 2334002848, 0x0, 418435064) end. Duration was 401 ms.
17-03-17 22:51:39.408 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 22:51:39.408 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:51:39.408 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:51:39.408 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-17 22:51:39.408 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:51:39.418 -07 000000382 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:51:39.418 -07 000000415 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 212 ms overall
17-03-17 22:51:39.418 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-17 22:51:39.618 -07 000000541 INF: FPGA: Recv YMVTILE
17-03-17 22:51:39.618 -07 000000551 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-17 22:51:39.658 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:51:39.668 -07 000000627 INF: FPGA: Recv YRDPOS 141368
17-03-17 22:51:39.668 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 22:51:39.668 -07 000000551 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:51:39.668 -07 000000551 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-17 22:51:39.668 -07 000000551 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.837 mm, average velocity = 2.163 mm/sec
17-03-17 22:51:40.618 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:51:40.618 -07 000000576 INF: FPGA: Recv YRDPOS 141368
17-03-17 22:51:40.628 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:51:40.628 -07 000000551 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:51:40.648 -07 000000551 INF: Y Motor: After move to 69.042610, error = -0.015266, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:51:40.648 -07 000000551 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:51:40.648 -07 000000551 INF: Y Motor: Moved to 69.0273 after 1446 ms (table move)
17-03-17 22:51:40.648 -07 000000486 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137162 mm (DAC = 29963)
17-03-17 22:51:40.648 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:40.658 -07 000000593 INF: FPGA: Recv ZSGSRD 30650
17-03-17 22:51:40.658 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 22:51:40.658 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:40.658 -07 000000382 INF: FPGA: Recv ZSGSRD 30635
17-03-17 22:51:40.668 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:51:40.668 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:40.668 -07 000000448 INF: FPGA: Recv ZSGSRD 30637
17-03-17 22:51:40.678 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:40.678 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:40.678 -07 000000623 INF: FPGA: Recv ZSGSRD 30635
17-03-17 22:51:40.688 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:40.688 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:40.688 -07 000000409 INF: FPGA: Recv ZSGSRD 30641
17-03-17 22:51:40.698 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:40.698 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:40.698 -07 000000415 INF: FPGA: Recv ZSGSRD 30643
17-03-17 22:51:40.708 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:40.708 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:40.708 -07 000000382 INF: FPGA: Recv ZSGSRD 30643
17-03-17 22:51:40.718 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:40.718 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:40.718 -07 000000547 INF: FPGA: Recv ZSGSRD 30641
17-03-17 22:51:40.728 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:40.728 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:40.728 -07 000000576 INF: FPGA: Recv ZSGSRD 30647
17-03-17 22:51:40.738 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:40.738 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:40.738 -07 000000627 INF: FPGA: Recv ZSGSRD 30637
17-03-17 22:51:40.748 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:40.748 -07 000000486 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:51:40.748 -07 000000415 INF: FPGA: Recv ZPIEZORD 26602
17-03-17 22:51:40.758 -07 000000486 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:40.758 -07 000000486 INF: Z Motor: Piezo is near 36.8 V (nominally 0 to 100 V), expect near 45.7 V, since DAC is at 4.572 V. Piezo Error = -8.9 V.
17-03-17 22:51:40.758 -07 000000486 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.2 um, Read 10 ADC samples: Avg = 30641 (-136.4 uncal um), Error = 0.8 uncal um, Median = 30641 (-136.4 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30635 (-136.3 uncal um), Max = 30650 (-136.4 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 22:51:40.758 -07 000000486 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30641, posNoise = 9, negNoise = 6
17-03-17 22:51:40.758 -07 000000486 INF: Z Motor: After move to -0.137162, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:51:40.758 -07 000000486 INF: Z Motor: Settle wait time = 1449 ms, measure time = 101 ms (allowed 150 ms), total time = 1550 ms
17-03-17 22:51:40.758 -07 000000486 INF: Z Motor: Waiting extra 49 ms after reading position to reach expected total of 150 ms
17-03-17 22:51:40.808 -07 000000486 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1604 ms
17-03-17 22:51:40.808 -07 000000486 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:51:40.808 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:51:40.808 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:51:40.808 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:51:40.808 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:51:40.808 -07 000000593 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:51:40.808 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:51:40.818 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 22:51:40.818 -07 000000593 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:51:40.818 -07 000000593 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:51:40.818 -07 000000593 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:51:40.828 -07 000000593 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 8 ms.
17-03-17 22:51:40.828 -07 000000593 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-17 22:51:40.828 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:51:40.868 -07 000000593 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:51:41.068 -07 000000482 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:51:41.068 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:51:41.068 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:51:41.068 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2268957512, 0x0, 559484976) start.
17-03-17 22:51:41.108 -07 000000627 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:51:41.108 -07 000000623 INF: FPGA: Recv CAMSNAP
17-03-17 22:51:41.108 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 285 ms overall
17-03-17 22:51:41.188 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2268957512, 0x0, 559484976) end. Duration was 117 ms.
17-03-17 22:51:41.188 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:51:41.188 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 22:51:41.188 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-17 22:51:41.208 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:51:41.208 -07 000000415 INF: Autofocus start
17-03-17 22:51:41.208 -07 000000415 INF: MeasureProfile start
17-03-17 22:51:41.208 -07 000000486 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:51:41.218 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:51:41.218 -07 000000502 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:51:41.218 -07 000000415 INF: MeasureProfile done
17-03-17 22:51:41.218 -07 000000415 INF: X=16  Z correction [um]=0.0530179
17-03-17 22:51:41.218 -07 000000415 INF: Autofocus finished
17-03-17 22:51:41.418 -07 000000486 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:51:41.418 -07 000000502 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 192 ms to get response, and 202 ms overall
17-03-17 22:51:41.418 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02734375, Z-position -0.137167636246832. ----------
17-03-17 22:51:41.418 -07 000000610 INF: Cycle	68	Tile	12	Exposure Settings		A	461	G	222	T	222	C	461
17-03-17 22:51:41.428 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28487, sync = True, waitForSettling = True)
17-03-17 22:51:41.428 -07 000000610 INF: Z Motor: Moving to -0.130405 mm, started at -0.137168 mm, distance = 6.76 um
17-03-17 22:51:41.428 -07 000000610 INF: FPGA: Xmit ZDACW 28487\n [Z Motor]
17-03-17 22:51:41.428 -07 000000627 INF: FPGA: Recv ZDACW
17-03-17 22:51:41.438 -07 000000610 INF: FPGA: 'ZDACW 28487' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:51:41.438 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:51:41.438 -07 000000623 INF: FPGA: Recv ZDACR 28487
17-03-17 22:51:41.448 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:41.448 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:51:41.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:41.598 -07 000000541 INF: FPGA: Recv ZSGSRD 29590
17-03-17 22:51:41.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:51:41.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:41.608 -07 000000618 INF: FPGA: Recv ZSGSRD 29595
17-03-17 22:51:41.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:41.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:41.618 -07 000000415 INF: FPGA: Recv ZSGSRD 29591
17-03-17 22:51:41.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:41.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:41.628 -07 000000551 INF: FPGA: Recv ZSGSRD 29589
17-03-17 22:51:41.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:41.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:41.638 -07 000000623 INF: FPGA: Recv ZSGSRD 29593
17-03-17 22:51:41.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:41.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:41.648 -07 000000486 INF: FPGA: Recv ZSGSRD 29590
17-03-17 22:51:41.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:41.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:41.658 -07 000000462 INF: FPGA: Recv ZSGSRD 29585
17-03-17 22:51:41.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:41.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:41.668 -07 000000593 INF: FPGA: Recv ZSGSRD 29587
17-03-17 22:51:41.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:41.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:41.678 -07 000000382 INF: FPGA: Recv ZSGSRD 29589
17-03-17 22:51:41.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:41.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:41.688 -07 000000576 INF: FPGA: Recv ZSGSRD 29594
17-03-17 22:51:41.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:41.698 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:51:41.698 -07 000000541 INF: FPGA: Recv ZPIEZORD 25248
17-03-17 22:51:41.708 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:41.708 -07 000000610 INF: Z Motor: Piezo is near 33.9 V (nominally 0 to 100 V), expect near 43.5 V, since DAC is at 4.347 V. Piezo Error = -9.5 V.
17-03-17 22:51:41.708 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.4 um, Read 10 ADC samples: Avg = 29590 (-129.6 uncal um), Error = 0.8 uncal um, Median = 29590 (-129.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29585 (-129.6 uncal um), Max = 29595 (-129.7 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 22:51:41.708 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29590, posNoise = 5, negNoise = 5
17-03-17 22:51:41.708 -07 000000610 INF: Z Motor: After move to -0.130405, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:51:41.708 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 22:51:41.708 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:51:41.708 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:51:41.708 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:51:41.708 -07 000000551 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:51:41.708 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:51:41.708 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:51:41.708 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:51:41.708 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:51:41.708 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:51:41.708 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:51:41.708 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:51:41.708 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:51:41.708 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:51:41.708 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:51:41.708 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 22:51:41.708 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:51:41.718 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 22:51:41.718 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 22:51:41.718 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 22:51:41.718 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 22:51:41.728 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 461 461 222 222 28664 150\n [Camera]
17-03-17 22:51:41.928 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:51:42.008 -07 000000541 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:51:42.008 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 67. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1078, R2=1105, Total=2183. Warn if over 250 bubbles per interval.
17-03-17 22:51:42.388 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 654
17-03-17 22:51:42.388 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 654
17-03-17 22:51:42.388 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:51:42.388 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:51:42.388 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 2378235720, 0x0, 391868352) start.
17-03-17 22:51:42.388 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 654
17-03-17 22:51:42.388 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 654
17-03-17 22:51:42.388 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:51:42.388 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:51:42.388 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-17 22:51:42.578 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28664 848
17-03-17 22:51:42.728 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning grn on 996
17-03-17 22:51:42.778 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 382 ms.
17-03-17 22:51:42.778 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-17 22:51:42.778 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:51:42.778 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 2378235720, 0x0, 391868352) end. Duration was 384 ms.
17-03-17 22:51:42.778 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 22:51:42.778 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:51:42.778 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:51:42.778 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:51:42.778 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 22:51:42.788 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 22:51:42.838 -07 000000448 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 68, FrontChillerTemperature: 4.001704,
17-03-17 22:51:42.948 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1218
17-03-17 22:51:42.948 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1218
17-03-17 22:51:42.948 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:51:42.948 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:51:42.948 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start.
17-03-17 22:51:42.958 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1218
17-03-17 22:51:42.958 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1218
17-03-17 22:51:42.958 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:51:42.958 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:51:42.958 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 1165594328, 0x0, 418435064) start.
17-03-17 22:51:43.248 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP 1411
17-03-17 22:51:43.248 -07 000000462 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:51:43.248 -07 000000610 INF: FPGA: 'CAMDBLSNAP 461 461 222 222 28664 150' command took 2 ms to send, 1517 ms to get response, and 1524 ms overall
17-03-17 22:51:43.258 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 22:51:43.258 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.02734375, Z-Position -0.130415789285842. ------
17-03-17 22:51:43.258 -07 000000409 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.13678 mm
17-03-17 22:51:43.258 -07 000000409 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:51:43.258 -07 000000415 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-17 22:51:43.258 -07 000000415 INF: Y Motor: Moving to 69.8726 mm, started at 69.0273 mm, delta = 0.8453 mm
17-03-17 22:51:43.258 -07 000000547 INF: Z Motor: Entering MoveAbsStepped (DAC = 29881, sync = True, waitForSettling = False)
17-03-17 22:51:43.258 -07 000000547 INF: Z Motor: Moving to -0.136786 mm, started at -0.130416 mm, distance = -6.37 um
17-03-17 22:51:43.268 -07 000000478 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:51:43.268 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:51:43.278 -07 000000478 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 22:51:43.278 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:51:43.278 -07 000000482 INF: FPGA: Recv YRDPOS 141369
17-03-17 22:51:43.288 -07 000000547 INF: FPGA: Xmit ZDACW 29881\n [Z Motor]
17-03-17 22:51:43.288 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-17 22:51:43.288 -07 000000415 INF: Y Motor: Encoder = 141369 = motor step 110444.5 = 69.0278 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:51:43.288 -07 000000462 INF: FPGA: Recv ZDACW
17-03-17 22:51:43.288 -07 000000415 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:51:43.288 -07 000000415 INF: Y Motor: Moving 1352 steps-31
17-03-17 22:51:43.298 -07 000000547 INF: FPGA: 'ZDACW 29881' command took 0 ms to send, 0 ms to get response, and 32 ms overall
17-03-17 22:51:43.308 -07 000000478 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:51:43.318 -07 000000415 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:51:43.328 -07 000000547 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:51:43.328 -07 000000382 INF: FPGA: Recv ZDACR 29881
17-03-17 22:51:43.338 -07 000000547 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 39 ms overall
17-03-17 22:51:43.338 -07 000000547 INF: Z Motor: MoveAbsStepped took 73 ms (did NOT wait for settling yet))
17-03-17 22:51:43.348 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 1165594328, 0x0, 418435064) end. Duration was 390 ms.
17-03-17 22:51:43.348 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 22:51:43.348 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:51:43.348 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 394 ms.
17-03-17 22:51:43.348 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 22:51:43.348 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:51:43.348 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:51:43.358 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 22:51:43.358 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 22:51:43.358 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 22:51:43.508 -07 000000462 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:51:43.508 -07 000000478 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 232 ms overall
17-03-17 22:51:43.688 -07 000000501 INF: FPGA: Recv YMVTILE
17-03-17 22:51:43.688 -07 000000415 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 367 ms to get response, and 404 ms overall
17-03-17 22:51:43.728 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:51:43.738 -07 000000593 INF: FPGA: Recv YRDPOS 143080
17-03-17 22:51:43.738 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 22:51:43.738 -07 000000415 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:51:43.738 -07 000000415 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-17 22:51:43.738 -07 000000415 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 404 ms, distance = 0.845 mm, average velocity = 2.092 mm/sec
17-03-17 22:51:44.688 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:51:44.688 -07 000000429 INF: FPGA: Recv YRDPOS 143081
17-03-17 22:51:44.698 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:51:44.698 -07 000000415 INF: Y Motor: Encoder = 143081 = motor step 111782.0 = 69.8638 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:51:44.718 -07 000000415 INF: Y Motor: After move to 69.872612, error = -0.008842, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:51:44.718 -07 000000415 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 22:51:44.718 -07 000000415 INF: Y Motor: Moved to 69.8638 after 1459 ms (table move)
17-03-17 22:51:44.718 -07 000000409 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136786 mm (DAC = 29881)
17-03-17 22:51:44.718 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:44.728 -07 000000551 INF: FPGA: Recv ZSGSRD 30584
17-03-17 22:51:44.728 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 22:51:44.728 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:44.728 -07 000000429 INF: FPGA: Recv ZSGSRD 30580
17-03-17 22:51:44.738 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:51:44.738 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:44.738 -07 000000502 INF: FPGA: Recv ZSGSRD 30584
17-03-17 22:51:44.748 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:44.748 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:44.748 -07 000000623 INF: FPGA: Recv ZSGSRD 30583
17-03-17 22:51:44.758 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:44.758 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:44.758 -07 000000448 INF: FPGA: Recv ZSGSRD 30591
17-03-17 22:51:44.768 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:44.768 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:44.768 -07 000000576 INF: FPGA: Recv ZSGSRD 30584
17-03-17 22:51:44.778 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:44.778 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:44.778 -07 000000618 INF: FPGA: Recv ZSGSRD 30582
17-03-17 22:51:44.788 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:44.788 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:44.788 -07 000000478 INF: FPGA: Recv ZSGSRD 30584
17-03-17 22:51:44.798 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:44.798 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:44.798 -07 000000551 INF: FPGA: Recv ZSGSRD 30577
17-03-17 22:51:44.808 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:44.808 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:44.808 -07 000000627 INF: FPGA: Recv ZSGSRD 30584
17-03-17 22:51:44.818 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:44.818 -07 000000409 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:51:44.818 -07 000000541 INF: FPGA: Recv ZPIEZORD 26579
17-03-17 22:51:44.828 -07 000000409 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:44.828 -07 000000409 INF: Z Motor: Piezo is near 36.8 V (nominally 0 to 100 V), expect near 45.6 V, since DAC is at 4.560 V. Piezo Error = -8.8 V.
17-03-17 22:51:44.828 -07 000000409 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.8 um, Read 10 ADC samples: Avg = 30583 (-136.0 uncal um), Error = 0.8 uncal um, Median = 30584 (-136.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30577 (-136.0 uncal um), Max = 30591 (-136.1 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 22:51:44.828 -07 000000409 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30583, posNoise = 8, negNoise = 6
17-03-17 22:51:44.828 -07 000000409 INF: Z Motor: After move to -0.136786, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:51:44.828 -07 000000409 INF: Z Motor: Settle wait time = 1461 ms, measure time = 102 ms (allowed 150 ms), total time = 1563 ms
17-03-17 22:51:44.828 -07 000000409 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 22:51:44.878 -07 000000409 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1616 ms
17-03-17 22:51:44.878 -07 000000409 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:51:44.878 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:51:44.878 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:51:44.888 -07 000000593 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:51:44.888 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:51:44.888 -07 000000627 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:51:44.888 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:51:44.888 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 22:51:44.888 -07 000000627 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:51:44.888 -07 000000627 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 22:51:44.888 -07 000000627 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:51:44.898 -07 000000627 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-17 22:51:44.898 -07 000000627 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 22:51:44.908 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:51:44.948 -07 000000593 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:51:45.148 -07 000000547 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:51:45.148 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:51:45.148 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:51:45.158 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 22:51:45.188 -07 000000501 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:51:45.188 -07 000000502 INF: FPGA: Recv CAMSNAP
17-03-17 22:51:45.188 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 285 ms overall
17-03-17 22:51:45.268 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 22:51:45.268 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:51:45.268 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:51:45.268 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 22:51:45.288 -07 000000541 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:51:45.288 -07 000000409 INF: Autofocus start
17-03-17 22:51:45.288 -07 000000409 INF: MeasureProfile start
17-03-17 22:51:45.288 -07 000000551 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:51:45.298 -07 000000541 INF: FPGA: 'FOCMRRCUR 80' command took 2 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:51:45.298 -07 000000541 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:51:45.308 -07 000000409 INF: MeasureProfile done
17-03-17 22:51:45.308 -07 000000409 INF: X=0  Z correction [um]=-0.02394831
17-03-17 22:51:45.308 -07 000000409 INF: Autofocus finished
17-03-17 22:51:45.498 -07 000000486 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:51:45.498 -07 000000541 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:51:45.498 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86376953125, Z-position -0.13679503194261. ----------
17-03-17 22:51:45.498 -07 000000610 INF: Cycle	68	Tile	13	Exposure Settings		A	461	G	222	T	222	C	461
17-03-17 22:51:45.508 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28388, sync = True, waitForSettling = True)
17-03-17 22:51:45.508 -07 000000610 INF: Z Motor: Moving to -0.129952 mm, started at -0.136795 mm, distance = 6.84 um
17-03-17 22:51:45.508 -07 000000610 INF: FPGA: Xmit ZDACW 28388\n [Z Motor]
17-03-17 22:51:45.508 -07 000000593 INF: FPGA: Recv ZDACW
17-03-17 22:51:45.518 -07 000000610 INF: FPGA: 'ZDACW 28388' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:51:45.518 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:51:45.518 -07 000000475 INF: FPGA: Recv ZDACR 28388
17-03-17 22:51:45.528 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:45.528 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:51:45.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:45.678 -07 000000502 INF: FPGA: Recv ZSGSRD 29520
17-03-17 22:51:45.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:51:45.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:45.688 -07 000000547 INF: FPGA: Recv ZSGSRD 29523
17-03-17 22:51:45.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:45.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:45.698 -07 000000382 INF: FPGA: Recv ZSGSRD 29517
17-03-17 22:51:45.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:45.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:45.708 -07 000000501 INF: FPGA: Recv ZSGSRD 29520
17-03-17 22:51:45.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:45.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:45.718 -07 000000478 INF: FPGA: Recv ZSGSRD 29521
17-03-17 22:51:45.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:45.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:45.728 -07 000000627 INF: FPGA: Recv ZSGSRD 29520
17-03-17 22:51:45.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:45.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:45.738 -07 000000448 INF: FPGA: Recv ZSGSRD 29516
17-03-17 22:51:45.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:45.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:45.748 -07 000000623 INF: FPGA: Recv ZSGSRD 29517
17-03-17 22:51:45.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:45.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:45.758 -07 000000593 INF: FPGA: Recv ZSGSRD 29523
17-03-17 22:51:45.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:45.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:45.768 -07 000000475 INF: FPGA: Recv ZSGSRD 29520
17-03-17 22:51:45.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:45.778 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:51:45.778 -07 000000502 INF: FPGA: Recv ZPIEZORD 25155
17-03-17 22:51:45.788 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:45.788 -07 000000610 INF: Z Motor: Piezo is near 33.7 V (nominally 0 to 100 V), expect near 43.3 V, since DAC is at 4.332 V. Piezo Error = -9.6 V.
17-03-17 22:51:45.788 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.0 um, Read 10 ADC samples: Avg = 29520 (-129.2 uncal um), Error = 0.8 uncal um, Median = 29520 (-129.2 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 29516 (-129.2 uncal um), Max = 29523 (-129.2 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 22:51:45.788 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29520, posNoise = 3, negNoise = 4
17-03-17 22:51:45.788 -07 000000610 INF: Z Motor: After move to -0.129952, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:51:45.788 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 22:51:45.788 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:51:45.788 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:51:45.788 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:51:45.788 -07 000000623 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:51:45.788 -07 000000551 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:51:45.788 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:51:45.788 -07 000000475 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:51:45.788 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:51:45.788 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:51:45.788 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:51:45.788 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:51:45.788 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:51:45.798 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 22:51:45.798 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:51:45.798 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 22:51:45.798 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:51:45.808 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 22:51:45.808 -07 000000551 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 22:51:45.808 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 22:51:45.808 -07 000000475 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 22:51:45.808 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 461 461 222 222 28565 150\n [Camera]
17-03-17 22:51:46.008 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:51:46.468 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 653
17-03-17 22:51:46.468 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 653
17-03-17 22:51:46.468 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:51:46.468 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 653
17-03-17 22:51:46.468 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 653
17-03-17 22:51:46.468 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:51:46.478 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:51:46.478 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-17 22:51:46.478 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:51:46.478 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 22:51:46.658 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28565 846
17-03-17 22:51:46.808 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning grn on 996
17-03-17 22:51:46.858 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 384 ms.
17-03-17 22:51:46.858 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 22:51:46.858 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:51:46.858 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 381 ms.
17-03-17 22:51:46.858 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-17 22:51:46.858 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:51:46.858 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:51:46.868 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 22:51:46.868 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:51:46.868 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 22:51:47.008 -07 000000478 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:51:47.008 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 67. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1078, R2=1105, Total=2183. Warn if over 250 bubbles per interval.
17-03-17 22:51:47.028 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1218
17-03-17 22:51:47.028 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1218
17-03-17 22:51:47.038 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:51:47.038 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1218
17-03-17 22:51:47.038 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1218
17-03-17 22:51:47.038 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:51:47.038 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:51:47.038 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-17 22:51:47.038 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:51:47.038 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 22:51:47.228 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP 1410
17-03-17 22:51:47.228 -07 000000627 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:51:47.228 -07 000000610 INF: FPGA: 'CAMDBLSNAP 461 461 222 222 28565 150' command took 2 ms to send, 1411 ms to get response, and 1418 ms overall
17-03-17 22:51:47.228 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 22:51:47.228 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.86376953125, Z-Position -0.129966094435918. ------
17-03-17 22:51:47.228 -07 000000486 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:51:47.228 -07 000000382 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.13635 mm
17-03-17 22:51:47.228 -07 000000382 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:51:47.228 -07 000000501 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-17 22:51:47.228 -07 000000501 INF: Y Motor: Moving to 70.7026 mm, started at 69.8638 mm, delta = 0.8388 mm
17-03-17 22:51:47.228 -07 000000541 INF: Z Motor: Entering MoveAbsStepped (DAC = 29786, sync = True, waitForSettling = False)
17-03-17 22:51:47.228 -07 000000541 INF: Z Motor: Moving to -0.136352 mm, started at -0.129966 mm, distance = -6.39 um
17-03-17 22:51:47.228 -07 000000627 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:51:47.238 -07 000000486 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:51:47.348 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:51:47.348 -07 000000502 INF: FPGA: Recv YRDPOS 143081
17-03-17 22:51:47.358 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 120 ms overall
17-03-17 22:51:47.358 -07 000000501 INF: Y Motor: Encoder = 143081 = motor step 111782.0 = 69.8638 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:51:47.358 -07 000000501 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:51:47.358 -07 000000501 INF: Y Motor: Moving 1342 steps-19
17-03-17 22:51:47.358 -07 000000541 INF: FPGA: Xmit ZDACW 29786\n [Z Motor]
17-03-17 22:51:47.358 -07 000000576 INF: FPGA: Recv ZDACW
17-03-17 22:51:47.368 -07 000000486 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:51:47.368 -07 000000541 INF: FPGA: 'ZDACW 29786' command took 1 ms to send, 0 ms to get response, and 130 ms overall
17-03-17 22:51:47.378 -07 000000501 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:51:47.388 -07 000000541 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:51:47.388 -07 000000593 INF: FPGA: Recv ZDACR 29786
17-03-17 22:51:47.398 -07 000000541 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:51:47.398 -07 000000541 INF: Z Motor: MoveAbsStepped took 160 ms (did NOT wait for settling yet))
17-03-17 22:51:47.438 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 396 ms.
17-03-17 22:51:47.438 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 22:51:47.438 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:51:47.438 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 399 ms.
17-03-17 22:51:47.438 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 22:51:47.438 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:51:47.448 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:51:47.448 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:51:47.448 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-17 22:51:47.448 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-17 22:51:47.568 -07 000000576 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:51:47.568 -07 000000486 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 216 ms overall
17-03-17 22:51:47.748 -07 000000593 INF: FPGA: Recv YMVTILE
17-03-17 22:51:47.748 -07 000000501 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 22:51:47.788 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:51:47.798 -07 000000415 INF: FPGA: Recv YRDPOS 144770
17-03-17 22:51:47.798 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 22:51:47.798 -07 000000501 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:51:47.798 -07 000000501 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-17 22:51:47.798 -07 000000501 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.839 mm, average velocity = 2.113 mm/sec
17-03-17 22:51:48.198 -07 000000409 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 68, FrontChillerTemperature: 3.986717,
17-03-17 22:51:48.748 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:51:48.748 -07 000000415 INF: FPGA: Recv YRDPOS 144771
17-03-17 22:51:48.758 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:48.758 -07 000000501 INF: Y Motor: Encoder = 144771 = motor step 113102.3 = 70.6890 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:51:48.778 -07 000000501 INF: Y Motor: After move to 70.702606, error = -0.013641, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:51:48.778 -07 000000501 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 22:51:48.778 -07 000000501 INF: Y Motor: Moved to 70.6890 after 1546 ms (table move)
17-03-17 22:51:48.778 -07 000000382 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136352 mm (DAC = 29786)
17-03-17 22:51:48.778 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:48.788 -07 000000618 INF: FPGA: Recv ZSGSRD 30511
17-03-17 22:51:48.788 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 4 ms to get response, and 5 ms overall
17-03-17 22:51:48.788 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:48.788 -07 000000627 INF: FPGA: Recv ZSGSRD 30514
17-03-17 22:51:48.798 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 22:51:48.798 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:48.798 -07 000000486 INF: FPGA: Recv ZSGSRD 30511
17-03-17 22:51:48.808 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:48.808 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:48.808 -07 000000623 INF: FPGA: Recv ZSGSRD 30514
17-03-17 22:51:48.818 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:48.818 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:48.818 -07 000000501 INF: FPGA: Recv ZSGSRD 30518
17-03-17 22:51:48.828 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:48.828 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:48.828 -07 000000448 INF: FPGA: Recv ZSGSRD 30517
17-03-17 22:51:48.838 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:48.838 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:48.838 -07 000000415 INF: FPGA: Recv ZSGSRD 30516
17-03-17 22:51:48.848 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:48.848 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:48.848 -07 000000409 INF: FPGA: Recv ZSGSRD 30516
17-03-17 22:51:48.858 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:48.858 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:48.858 -07 000000502 INF: FPGA: Recv ZSGSRD 30511
17-03-17 22:51:48.868 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:48.868 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:48.868 -07 000000576 INF: FPGA: Recv ZSGSRD 30512
17-03-17 22:51:48.878 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:48.878 -07 000000382 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:51:48.878 -07 000000618 INF: FPGA: Recv ZPIEZORD 26477
17-03-17 22:51:48.888 -07 000000382 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:48.888 -07 000000382 INF: Z Motor: Piezo is near 36.6 V (nominally 0 to 100 V), expect near 45.5 V, since DAC is at 4.545 V. Piezo Error = -8.9 V.
17-03-17 22:51:48.888 -07 000000382 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.4 um, Read 10 ADC samples: Avg = 30514 (-135.6 uncal um), Error = 0.8 uncal um, Median = 30514 (-135.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 30511 (-135.5 uncal um), Max = 30518 (-135.6 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 22:51:48.888 -07 000000382 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30514, posNoise = 4, negNoise = 3
17-03-17 22:51:48.888 -07 000000382 INF: Z Motor: After move to -0.136352, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:51:48.888 -07 000000382 INF: Z Motor: Settle wait time = 1549 ms, measure time = 102 ms (allowed 150 ms), total time = 1651 ms
17-03-17 22:51:48.888 -07 000000382 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 22:51:48.938 -07 000000382 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1703 ms
17-03-17 22:51:48.938 -07 000000382 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:51:48.938 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:51:48.938 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:51:48.938 -07 000000547 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:51:48.938 -07 000000623 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:51:48.938 -07 000000415 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:51:48.938 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:51:48.938 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 22:51:48.938 -07 000000415 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:51:48.948 -07 000000415 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:51:48.948 -07 000000415 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:51:48.948 -07 000000415 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 22:51:48.948 -07 000000415 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 22:51:48.958 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:51:48.998 -07 000000547 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:51:49.198 -07 000000409 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:51:49.198 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:51:49.198 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:51:49.198 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 22:51:49.238 -07 000000593 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:51:49.248 -07 000000478 INF: FPGA: Recv CAMSNAP
17-03-17 22:51:49.248 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 287 ms to get response, and 295 ms overall
17-03-17 22:51:49.318 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 22:51:49.318 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:51:49.318 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:51:49.318 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 22:51:49.348 -07 000000409 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:51:49.348 -07 000000576 INF: Autofocus start
17-03-17 22:51:49.348 -07 000000576 INF: MeasureProfile start
17-03-17 22:51:49.348 -07 000000448 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:51:49.358 -07 000000409 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:51:49.358 -07 000000409 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:51:49.358 -07 000000576 INF: MeasureProfile done
17-03-17 22:51:49.358 -07 000000576 INF: X=-5  Z correction [um]=-0.02774208
17-03-17 22:51:49.358 -07 000000576 INF: Autofocus finished
17-03-17 22:51:49.558 -07 000000627 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:51:49.558 -07 000000409 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 203 ms overall
17-03-17 22:51:49.558 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.68896484375, Z-position -0.136351761304829. ----------
17-03-17 22:51:49.558 -07 000000610 INF: Cycle	68	Tile	14	Exposure Settings		A	461	G	222	T	222	C	461
17-03-17 22:51:49.568 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28293, sync = True, waitForSettling = True)
17-03-17 22:51:49.568 -07 000000610 INF: Z Motor: Moving to -0.129517 mm, started at -0.136352 mm, distance = 6.83 um
17-03-17 22:51:49.568 -07 000000610 INF: FPGA: Xmit ZDACW 28293\n [Z Motor]
17-03-17 22:51:49.568 -07 000000462 INF: FPGA: Recv ZDACW
17-03-17 22:51:49.578 -07 000000610 INF: FPGA: 'ZDACW 28293' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:51:49.578 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:51:49.578 -07 000000482 INF: FPGA: Recv ZDACR 28293
17-03-17 22:51:49.588 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:49.588 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:51:49.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:49.738 -07 000000462 INF: FPGA: Recv ZSGSRD 29448
17-03-17 22:51:49.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:51:49.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:49.748 -07 000000448 INF: FPGA: Recv ZSGSRD 29447
17-03-17 22:51:49.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:49.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:49.758 -07 000000475 INF: FPGA: Recv ZSGSRD 29454
17-03-17 22:51:49.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:49.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:49.768 -07 000000593 INF: FPGA: Recv ZSGSRD 29455
17-03-17 22:51:49.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:49.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:49.778 -07 000000501 INF: FPGA: Recv ZSGSRD 29449
17-03-17 22:51:49.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:49.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:49.788 -07 000000382 INF: FPGA: Recv ZSGSRD 29450
17-03-17 22:51:49.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:49.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:49.798 -07 000000409 INF: FPGA: Recv ZSGSRD 29449
17-03-17 22:51:49.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:49.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:49.808 -07 000000547 INF: FPGA: Recv ZSGSRD 29450
17-03-17 22:51:49.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:49.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:49.818 -07 000000462 INF: FPGA: Recv ZSGSRD 29450
17-03-17 22:51:49.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:49.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:49.828 -07 000000415 INF: FPGA: Recv ZSGSRD 29446
17-03-17 22:51:49.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:49.838 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:51:49.838 -07 000000618 INF: FPGA: Recv ZPIEZORD 25052
17-03-17 22:51:49.848 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:49.848 -07 000000610 INF: Z Motor: Piezo is near 33.5 V (nominally 0 to 100 V), expect near 43.2 V, since DAC is at 4.317 V. Piezo Error = -9.7 V.
17-03-17 22:51:49.848 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.5 um, Read 10 ADC samples: Avg = 29450 (-128.7 uncal um), Error = 0.8 uncal um, Median = 29450 (-128.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29446 (-128.7 uncal um), Max = 29455 (-128.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 22:51:49.848 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29450, posNoise = 5, negNoise = 4
17-03-17 22:51:49.848 -07 000000610 INF: Z Motor: After move to -0.129517, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:51:49.848 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 22:51:49.848 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:51:49.848 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:51:49.848 -07 000000415 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:51:49.848 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:51:49.848 -07 000000429 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:51:49.848 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:51:49.848 -07 000000541 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:51:49.848 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:51:49.848 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 22:51:49.848 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:51:49.848 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 22:51:49.848 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:51:49.858 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:51:49.858 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:51:49.858 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 22:51:49.858 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:51:49.868 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 22:51:49.868 -07 000000541 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 22:51:49.868 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 22:51:49.868 -07 000000429 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 22:51:49.868 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 461 461 222 222 28469 150\n [Camera]
17-03-17 22:51:50.068 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:51:50.528 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 653
17-03-17 22:51:50.528 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 653
17-03-17 22:51:50.528 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:51:50.528 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 653
17-03-17 22:51:50.528 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 653
17-03-17 22:51:50.528 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:51:50.538 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:51:50.538 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-17 22:51:50.538 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:51:50.538 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 22:51:50.718 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28469 846
17-03-17 22:51:50.868 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP turning grn on 996
17-03-17 22:51:50.918 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 384 ms.
17-03-17 22:51:50.918 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 22:51:50.918 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:51:50.918 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 384 ms.
17-03-17 22:51:50.918 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-17 22:51:50.918 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:51:50.918 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:51:50.918 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 22:51:50.928 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:51:50.928 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 22:51:51.088 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1218
17-03-17 22:51:51.088 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1218
17-03-17 22:51:51.088 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:51:51.098 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1218
17-03-17 22:51:51.098 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:51:51.098 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1218
17-03-17 22:51:51.098 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 656674232, 0x0, 391868352) start.
17-03-17 22:51:51.098 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:51:51.098 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:51:51.098 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 2334002848, 0x0, 418435064) start.
17-03-17 22:51:51.288 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP 1412
17-03-17 22:51:51.288 -07 000000475 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:51:51.288 -07 000000610 INF: FPGA: 'CAMDBLSNAP 461 461 222 222 28469 150' command took 4 ms to send, 1414 ms to get response, and 1421 ms overall
17-03-17 22:51:51.288 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 22:51:51.288 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.68896484375, Z-Position -0.129516399585995. ------
17-03-17 22:51:51.298 -07 000000547 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:51:51.298 -07 000000551 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.13568 mm
17-03-17 22:51:51.298 -07 000000551 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:51:51.298 -07 000000448 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-17 22:51:51.298 -07 000000448 INF: Y Motor: Moving to 71.5326 mm, started at 70.6890 mm, delta = 0.8436 mm
17-03-17 22:51:51.298 -07 000000415 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:51:51.298 -07 000000462 INF: Z Motor: Entering MoveAbsStepped (DAC = 29639, sync = True, waitForSettling = False)
17-03-17 22:51:51.298 -07 000000462 INF: Z Motor: Moving to -0.135679 mm, started at -0.129516 mm, distance = -6.16 um
17-03-17 22:51:51.308 -07 000000547 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:51:51.308 -07 000000462 INF: FPGA: Xmit ZDACW 29639\n [Z Motor]
17-03-17 22:51:51.308 -07 000000618 INF: FPGA: Recv ZDACW
17-03-17 22:51:51.318 -07 000000462 INF: FPGA: 'ZDACW 29639' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 22:51:51.318 -07 000000448 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:51:51.318 -07 000000623 INF: FPGA: Recv YRDPOS 144771
17-03-17 22:51:51.328 -07 000000547 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:51:51.328 -07 000000448 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-17 22:51:51.328 -07 000000448 INF: Y Motor: Encoder = 144771 = motor step 113102.3 = 70.6890 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:51:51.328 -07 000000448 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:51:51.328 -07 000000448 INF: Y Motor: Moving 1350 steps-29
17-03-17 22:51:51.338 -07 000000462 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:51:51.338 -07 000000541 INF: FPGA: Recv ZDACR 29639
17-03-17 22:51:51.348 -07 000000462 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:51:51.348 -07 000000462 INF: Z Motor: MoveAbsStepped took 44 ms (did NOT wait for settling yet))
17-03-17 22:51:51.348 -07 000000448 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:51:51.488 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 2334002848, 0x0, 418435064) end. Duration was 395 ms.
17-03-17 22:51:51.488 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 22:51:51.488 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:51:51.498 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:51:51.498 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 656674232, 0x0, 391868352) end. Duration was 400 ms.
17-03-17 22:51:51.498 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 22:51:51.498 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:51:51.498 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:51:51.498 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-17 22:51:51.498 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-17 22:51:51.528 -07 000000482 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:51:51.528 -07 000000547 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 22:51:51.718 -07 000000486 INF: FPGA: Recv YMVTILE
17-03-17 22:51:51.718 -07 000000448 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 22:51:51.758 -07 000000448 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:51:51.768 -07 000000576 INF: FPGA: Recv YRDPOS 146471
17-03-17 22:51:51.768 -07 000000448 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 22:51:51.768 -07 000000448 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:51:51.768 -07 000000448 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 22:51:51.768 -07 000000448 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.844 mm, average velocity = 2.120 mm/sec
17-03-17 22:51:52.008 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:51:52.008 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 67. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1078, R2=1105, Total=2183. Warn if over 250 bubbles per interval.
17-03-17 22:51:52.718 -07 000000448 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:51:52.718 -07 000000415 INF: FPGA: Recv YRDPOS 146471
17-03-17 22:51:52.728 -07 000000448 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:51:52.728 -07 000000448 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:51:52.748 -07 000000448 INF: Y Motor: After move to 71.532608, error = -0.013565, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:51:52.748 -07 000000448 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:51:52.748 -07 000000448 INF: Y Motor: Moved to 71.5190 after 1451 ms (table move)
17-03-17 22:51:52.748 -07 000000551 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135679 mm (DAC = 29639)
17-03-17 22:51:52.748 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:52.758 -07 000000593 INF: FPGA: Recv ZSGSRD 30416
17-03-17 22:51:52.758 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-17 22:51:52.758 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:52.758 -07 000000462 INF: FPGA: Recv ZSGSRD 30413
17-03-17 22:51:52.768 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:51:52.768 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:52.768 -07 000000478 INF: FPGA: Recv ZSGSRD 30406
17-03-17 22:51:52.778 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:52.778 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:52.778 -07 000000409 INF: FPGA: Recv ZSGSRD 30414
17-03-17 22:51:52.788 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:52.788 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:52.788 -07 000000448 INF: FPGA: Recv ZSGSRD 30407
17-03-17 22:51:52.798 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:52.798 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:52.798 -07 000000627 INF: FPGA: Recv ZSGSRD 30418
17-03-17 22:51:52.808 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:52.808 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:52.808 -07 000000462 INF: FPGA: Recv ZSGSRD 30410
17-03-17 22:51:52.818 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:52.818 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:52.818 -07 000000502 INF: FPGA: Recv ZSGSRD 30405
17-03-17 22:51:52.828 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:52.828 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:52.828 -07 000000547 INF: FPGA: Recv ZSGSRD 30411
17-03-17 22:51:52.838 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:52.838 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:52.838 -07 000000482 INF: FPGA: Recv ZSGSRD 30408
17-03-17 22:51:52.848 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:52.848 -07 000000551 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:51:52.848 -07 000000502 INF: FPGA: Recv ZPIEZORD 26371
17-03-17 22:51:52.858 -07 000000551 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:52.858 -07 000000551 INF: Z Motor: Piezo is near 36.3 V (nominally 0 to 100 V), expect near 45.2 V, since DAC is at 4.523 V. Piezo Error = -8.9 V.
17-03-17 22:51:52.858 -07 000000551 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.7 um, Read 10 ADC samples: Avg = 30411 (-134.9 uncal um), Error = 0.8 uncal um, Median = 30410 (-134.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30405 (-134.9 uncal um), Max = 30418 (-134.9 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 22:51:52.858 -07 000000551 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30411, posNoise = 7, negNoise = 6
17-03-17 22:51:52.858 -07 000000551 INF: Z Motor: After move to -0.135679, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:51:52.858 -07 000000551 INF: Z Motor: Settle wait time = 1453 ms, measure time = 102 ms (allowed 150 ms), total time = 1555 ms
17-03-17 22:51:52.858 -07 000000551 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 22:51:52.908 -07 000000551 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1608 ms
17-03-17 22:51:52.908 -07 000000551 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:51:52.908 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:51:52.908 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:51:52.908 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:51:52.908 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:51:52.918 -07 000000415 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:51:52.918 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:51:52.918 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:51:52.918 -07 000000415 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:51:52.918 -07 000000415 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:51:52.918 -07 000000415 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:51:52.928 -07 000000415 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 22:51:52.928 -07 000000415 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-17 22:51:52.928 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:51:52.968 -07 000000448 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:51:53.168 -07 000000627 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:51:53.168 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:51:53.178 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:51:53.178 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2268957512, 0x0, 559484976) start.
17-03-17 22:51:53.208 -07 000000502 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:51:53.208 -07 000000475 INF: FPGA: Recv CAMSNAP
17-03-17 22:51:53.208 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 284 ms overall
17-03-17 22:51:53.288 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2268957512, 0x0, 559484976) end. Duration was 117 ms.
17-03-17 22:51:53.288 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:51:53.288 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 22:51:53.288 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-17 22:51:53.308 -07 000000409 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:51:53.308 -07 000000482 INF: Autofocus start
17-03-17 22:51:53.308 -07 000000482 INF: MeasureProfile start
17-03-17 22:51:53.308 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:51:53.318 -07 000000409 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:51:53.318 -07 000000409 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:51:53.318 -07 000000482 INF: MeasureProfile done
17-03-17 22:51:53.318 -07 000000482 INF: X=32  Z correction [um]=0.1299841
17-03-17 22:51:53.318 -07 000000482 INF: Autofocus finished
17-03-17 22:51:53.518 -07 000000382 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:51:53.518 -07 000000409 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:51:53.518 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.51904296875, Z-position -0.135690067454227. ----------
17-03-17 22:51:53.518 -07 000000610 INF: Cycle	68	Tile	15	Exposure Settings		A	461	G	222	T	222	C	461
17-03-17 22:51:53.528 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28180, sync = True, waitForSettling = True)
17-03-17 22:51:53.528 -07 000000610 INF: Z Motor: Moving to -0.129000 mm, started at -0.135690 mm, distance = 6.69 um
17-03-17 22:51:53.528 -07 000000610 INF: FPGA: Xmit ZDACW 28180\n [Z Motor]
17-03-17 22:51:53.528 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 22:51:53.538 -07 000000610 INF: FPGA: 'ZDACW 28180' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:53.538 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:51:53.538 -07 000000547 INF: FPGA: Recv ZDACR 28180
17-03-17 22:51:53.548 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:53.548 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:51:53.558 -07 000000409 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 68, FrontChillerTemperature: 3.973092,
17-03-17 22:51:53.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:53.698 -07 000000409 INF: FPGA: Recv ZSGSRD 29371
17-03-17 22:51:53.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:51:53.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:53.718 -07 000000593 INF: FPGA: Recv ZSGSRD 29374
17-03-17 22:51:53.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:51:53.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:53.728 -07 000000627 INF: FPGA: Recv ZSGSRD 29370
17-03-17 22:51:53.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:53.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:53.738 -07 000000541 INF: FPGA: Recv ZSGSRD 29370
17-03-17 22:51:53.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:53.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:53.748 -07 000000415 INF: FPGA: Recv ZSGSRD 29372
17-03-17 22:51:53.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:53.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:53.758 -07 000000448 INF: FPGA: Recv ZSGSRD 29369
17-03-17 22:51:53.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:53.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:53.768 -07 000000409 INF: FPGA: Recv ZSGSRD 29372
17-03-17 22:51:53.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:53.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:53.778 -07 000000482 INF: FPGA: Recv ZSGSRD 29368
17-03-17 22:51:53.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:53.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:53.788 -07 000000502 INF: FPGA: Recv ZSGSRD 29371
17-03-17 22:51:53.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:53.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:53.798 -07 000000623 INF: FPGA: Recv ZSGSRD 29371
17-03-17 22:51:53.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:53.808 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:51:53.808 -07 000000462 INF: FPGA: Recv ZPIEZORD 25013
17-03-17 22:51:53.818 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:53.818 -07 000000610 INF: Z Motor: Piezo is near 33.4 V (nominally 0 to 100 V), expect near 43.0 V, since DAC is at 4.300 V. Piezo Error = -9.6 V.
17-03-17 22:51:53.818 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.0 um, Read 10 ADC samples: Avg = 29371 (-128.2 uncal um), Error = 0.8 uncal um, Median = 29371 (-128.2 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 29368 (-128.2 uncal um), Max = 29374 (-128.3 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 22:51:53.818 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29371, posNoise = 3, negNoise = 3
17-03-17 22:51:53.818 -07 000000610 INF: Z Motor: After move to -0.129000, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:51:53.818 -07 000000610 INF: Z Motor: MoveAbsStepped took 290 ms)
17-03-17 22:51:53.818 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:51:53.818 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:51:53.818 -07 000000482 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:51:53.818 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:51:53.818 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:51:53.818 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:51:53.818 -07 000000623 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:51:53.818 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:51:53.818 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:51:53.818 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:51:53.818 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:51:53.818 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:51:53.828 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:51:53.828 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:51:53.828 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 22:51:53.828 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:51:53.828 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 22:51:53.828 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 22:51:53.838 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 22:51:53.838 -07 000000623 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 22:51:53.838 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 461 461 222 222 28357 150\n [Camera]
17-03-17 22:51:54.038 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:51:54.498 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 653
17-03-17 22:51:54.498 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 653
17-03-17 22:51:54.498 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:51:54.498 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:51:54.498 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 2378235720, 0x0, 391868352) start.
17-03-17 22:51:54.498 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 653
17-03-17 22:51:54.498 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 653
17-03-17 22:51:54.498 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:51:54.498 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:51:54.498 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-17 22:51:54.688 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28357 848
17-03-17 22:51:54.838 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP turning grn on 996
17-03-17 22:51:54.878 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 22:51:54.878 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-17 22:51:54.878 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:51:54.878 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 2378235720, 0x0, 391868352) end. Duration was 384 ms.
17-03-17 22:51:54.878 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 22:51:54.878 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:51:54.888 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:51:54.888 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:51:54.888 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 22:51:54.888 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 22:51:55.058 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1218
17-03-17 22:51:55.058 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1218
17-03-17 22:51:55.058 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:51:55.058 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:51:55.058 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start.
17-03-17 22:51:55.068 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1218
17-03-17 22:51:55.068 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1218
17-03-17 22:51:55.068 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:51:55.068 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:51:55.068 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 1165594328, 0x0, 418435064) start.
17-03-17 22:51:55.248 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP 1411
17-03-17 22:51:55.248 -07 000000475 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:51:55.258 -07 000000610 INF: FPGA: 'CAMDBLSNAP 461 461 222 222 28357 150' command took 2 ms to send, 1409 ms to get response, and 1418 ms overall
17-03-17 22:51:55.258 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 22:51:55.258 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.51904296875, Z-Position -0.129008886826796. ------
17-03-17 22:51:55.258 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:51:55.258 -07 000000382 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.13538 mm
17-03-17 22:51:55.258 -07 000000382 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:51:55.258 -07 000000551 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-17 22:51:55.258 -07 000000551 INF: Y Motor: Moving to 72.3626 mm, started at 71.5190 mm, delta = 0.8436 mm
17-03-17 22:51:55.258 -07 000000623 INF: Z Motor: Entering MoveAbsStepped (DAC = 29575, sync = True, waitForSettling = False)
17-03-17 22:51:55.258 -07 000000623 INF: Z Motor: Moving to -0.135386 mm, started at -0.129009 mm, distance = -6.38 um
17-03-17 22:51:55.258 -07 000000475 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:51:55.268 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 22:51:55.268 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:51:55.268 -07 000000627 INF: FPGA: Recv YRDPOS 146472
17-03-17 22:51:55.278 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 22:51:55.278 -07 000000551 INF: Y Motor: Encoder = 146472 = motor step 114431.3 = 71.5195 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:51:55.278 -07 000000623 INF: FPGA: Xmit ZDACW 29575\n [Z Motor]
17-03-17 22:51:55.278 -07 000000547 INF: FPGA: Recv ZDACW
17-03-17 22:51:55.398 -07 000000462 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:51:55.398 -07 000000623 INF: FPGA: 'ZDACW 29575' command took 0 ms to send, 0 ms to get response, and 139 ms overall
17-03-17 22:51:55.398 -07 000000551 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:51:55.398 -07 000000551 INF: Y Motor: Moving 1349 steps-28
17-03-17 22:51:55.408 -07 000000623 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:51:55.408 -07 000000478 INF: FPGA: Recv ZDACR 29575
17-03-17 22:51:55.418 -07 000000551 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:51:55.418 -07 000000623 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 22:51:55.418 -07 000000623 INF: Z Motor: MoveAbsStepped took 152 ms (did NOT wait for settling yet))
17-03-17 22:51:55.458 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 398 ms.
17-03-17 22:51:55.458 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 22:51:55.458 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:51:55.468 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 1165594328, 0x0, 418435064) end. Duration was 398 ms.
17-03-17 22:51:55.468 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 22:51:55.468 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:51:55.468 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-17 22:51:55.468 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-17 22:51:55.468 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:51:55.478 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-17 22:51:55.598 -07 000000501 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:51:55.598 -07 000000462 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 199 ms to get response, and 339 ms overall
17-03-17 22:51:55.788 -07 000000475 INF: FPGA: Recv YMVTILE
17-03-17 22:51:55.788 -07 000000551 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 388 ms overall
17-03-17 22:51:55.828 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:51:55.838 -07 000000475 INF: FPGA: Recv YRDPOS 148172
17-03-17 22:51:55.838 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 22:51:55.838 -07 000000551 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:51:55.838 -07 000000551 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-17 22:51:55.838 -07 000000551 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.844 mm, average velocity = 2.174 mm/sec
17-03-17 22:51:56.788 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:51:56.788 -07 000000502 INF: FPGA: Recv YRDPOS 148172
17-03-17 22:51:56.798 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:56.798 -07 000000551 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:51:56.818 -07 000000551 INF: Y Motor: After move to 72.362610, error = -0.013000, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:51:56.818 -07 000000551 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:51:56.818 -07 000000551 INF: Y Motor: Moved to 72.3496 after 1557 ms (table move)
17-03-17 22:51:56.818 -07 000000382 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135386 mm (DAC = 29575)
17-03-17 22:51:56.818 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:56.828 -07 000000623 INF: FPGA: Recv ZSGSRD 30371
17-03-17 22:51:56.828 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 22:51:56.828 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:56.828 -07 000000475 INF: FPGA: Recv ZSGSRD 30373
17-03-17 22:51:56.838 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:51:56.838 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:56.838 -07 000000486 INF: FPGA: Recv ZSGSRD 30356
17-03-17 22:51:56.848 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:56.848 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:56.848 -07 000000623 INF: FPGA: Recv ZSGSRD 30363
17-03-17 22:51:56.858 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:56.858 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:56.858 -07 000000618 INF: FPGA: Recv ZSGSRD 30366
17-03-17 22:51:56.868 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:56.868 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:56.868 -07 000000448 INF: FPGA: Recv ZSGSRD 30367
17-03-17 22:51:56.878 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:56.878 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:56.878 -07 000000547 INF: FPGA: Recv ZSGSRD 30371
17-03-17 22:51:56.888 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:56.888 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:56.888 -07 000000627 INF: FPGA: Recv ZSGSRD 30360
17-03-17 22:51:56.898 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:56.898 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:56.898 -07 000000593 INF: FPGA: Recv ZSGSRD 30363
17-03-17 22:51:56.908 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:56.908 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:56.908 -07 000000618 INF: FPGA: Recv ZSGSRD 30365
17-03-17 22:51:56.918 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:56.918 -07 000000382 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:51:56.918 -07 000000409 INF: FPGA: Recv ZPIEZORD 26359
17-03-17 22:51:56.928 -07 000000382 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:56.928 -07 000000382 INF: Z Motor: Piezo is near 36.3 V (nominally 0 to 100 V), expect near 45.1 V, since DAC is at 4.513 V. Piezo Error = -8.8 V.
17-03-17 22:51:56.928 -07 000000382 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.4 um, Read 10 ADC samples: Avg = 30366 (-134.6 uncal um), Error = 0.8 uncal um, Median = 30366 (-134.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 30356 (-134.5 uncal um), Max = 30373 (-134.7 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-17 22:51:56.928 -07 000000382 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30366, posNoise = 7, negNoise = 10
17-03-17 22:51:56.928 -07 000000382 INF: Z Motor: After move to -0.135386, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:51:56.928 -07 000000382 INF: Z Motor: Settle wait time = 1560 ms, measure time = 102 ms (allowed 150 ms), total time = 1662 ms
17-03-17 22:51:56.928 -07 000000382 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 22:51:56.978 -07 000000382 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1715 ms
17-03-17 22:51:56.978 -07 000000382 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:51:56.978 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:51:56.978 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:51:56.978 -07 000000541 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:51:56.978 -07 000000475 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:51:56.978 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:51:56.978 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:51:56.988 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 22:51:56.988 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:51:56.988 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:51:56.988 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:51:56.998 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 22:51:56.998 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 22:51:56.998 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:51:57.008 -07 000000541 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:51:57.008 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 67. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1078, R2=1105, Total=2183. Warn if over 250 bubbles per interval.
17-03-17 22:51:57.038 -07 000000502 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:51:57.238 -07 000000448 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:51:57.238 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:51:57.248 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:51:57.248 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 22:51:57.278 -07 000000623 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:51:57.278 -07 000000482 INF: FPGA: Recv CAMSNAP
17-03-17 22:51:57.278 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 284 ms overall
17-03-17 22:51:57.368 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 118 ms.
17-03-17 22:51:57.368 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:51:57.368 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:51:57.368 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 125 ms.
17-03-17 22:51:57.478 -07 000000409 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:51:57.498 -07 000000576 INF: Autofocus start
17-03-17 22:51:57.498 -07 000000576 INF: MeasureProfile start
17-03-17 22:51:57.498 -07 000000541 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:51:57.508 -07 000000409 INF: FPGA: 'FOCMRRCUR 80' command took 18 ms to send, 0 ms to get response, and 24 ms overall
17-03-17 22:51:57.508 -07 000000409 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:51:57.508 -07 000000576 INF: MeasureProfile done
17-03-17 22:51:57.508 -07 000000576 INF: X=-16  Z correction [um]=-0.08128808
17-03-17 22:51:57.528 -07 000000576 INF: Autofocus finished
17-03-17 22:51:57.708 -07 000000429 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:51:57.708 -07 000000409 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:51:57.708 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.349609375, Z-position -0.135400977907848. ----------
17-03-17 22:51:57.708 -07 000000610 INF: Cycle	68	Tile	16	Exposure Settings		A	461	G	222	T	222	C	461
17-03-17 22:51:57.718 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28069, sync = True, waitForSettling = True)
17-03-17 22:51:57.718 -07 000000610 INF: Z Motor: Moving to -0.128492 mm, started at -0.135401 mm, distance = 6.91 um
17-03-17 22:51:57.718 -07 000000610 INF: FPGA: Xmit ZDACW 28069\n [Z Motor]
17-03-17 22:51:57.718 -07 000000486 INF: FPGA: Recv ZDACW
17-03-17 22:51:57.728 -07 000000610 INF: FPGA: 'ZDACW 28069' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:51:57.728 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:51:57.728 -07 000000541 INF: FPGA: Recv ZDACR 28069
17-03-17 22:51:57.738 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:57.738 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:51:57.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:57.888 -07 000000475 INF: FPGA: Recv ZSGSRD 29289
17-03-17 22:51:57.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:51:57.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:57.898 -07 000000382 INF: FPGA: Recv ZSGSRD 29294
17-03-17 22:51:57.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:57.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:57.908 -07 000000551 INF: FPGA: Recv ZSGSRD 29292
17-03-17 22:51:57.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:57.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:57.918 -07 000000623 INF: FPGA: Recv ZSGSRD 29287
17-03-17 22:51:57.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:57.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:57.928 -07 000000462 INF: FPGA: Recv ZSGSRD 29301
17-03-17 22:51:57.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:57.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:57.938 -07 000000475 INF: FPGA: Recv ZSGSRD 29292
17-03-17 22:51:57.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:57.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:57.948 -07 000000382 INF: FPGA: Recv ZSGSRD 29287
17-03-17 22:51:57.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:57.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:57.958 -07 000000551 INF: FPGA: Recv ZSGSRD 29296
17-03-17 22:51:57.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:57.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:57.968 -07 000000576 INF: FPGA: Recv ZSGSRD 29289
17-03-17 22:51:57.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:57.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:51:57.978 -07 000000478 INF: FPGA: Recv ZSGSRD 29291
17-03-17 22:51:57.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:57.988 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:51:57.988 -07 000000482 INF: FPGA: Recv ZPIEZORD 24899
17-03-17 22:51:57.998 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:51:57.998 -07 000000610 INF: Z Motor: Piezo is near 33.2 V (nominally 0 to 100 V), expect near 42.8 V, since DAC is at 4.283 V. Piezo Error = -9.6 V.
17-03-17 22:51:57.998 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.5 um, Read 10 ADC samples: Avg = 29292 (-127.7 uncal um), Error = 0.8 uncal um, Median = 29292 (-127.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 29287 (-127.7 uncal um), Max = 29301 (-127.8 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 22:51:57.998 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29292, posNoise = 9, negNoise = 5
17-03-17 22:51:57.998 -07 000000610 INF: Z Motor: After move to -0.128492, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:51:57.998 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 22:51:57.998 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:51:57.998 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:51:57.998 -07 000000448 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:51:57.998 -07 000000478 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:51:57.998 -07 000000627 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:51:57.998 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:51:57.998 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:51:57.998 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:51:57.998 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:51:57.998 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:51:57.998 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:51:57.998 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:51:58.008 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 22:51:58.008 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:51:58.008 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 22:51:58.008 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:51:58.018 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 22:51:58.018 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 22:51:58.018 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 17 ms.
17-03-17 22:51:58.018 -07 000000627 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 22:51:58.018 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 461 461 222 222 28246 150\n [Camera]
17-03-17 22:51:58.218 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:51:58.688 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 657
17-03-17 22:51:58.688 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 657
17-03-17 22:51:58.688 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 657
17-03-17 22:51:58.688 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 657
17-03-17 22:51:58.688 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:51:58.698 -07 000000409 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:51:58.698 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:51:58.698 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-17 22:51:58.698 -07 000000409 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:51:58.698 -07 000000409 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 22:51:58.878 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28246 846
17-03-17 22:51:58.918 -07 000000448 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 68, FrontChillerTemperature: 3.983999,
17-03-17 22:51:59.028 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning grn on 996
17-03-17 22:51:59.088 -07 000000409 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 383 ms.
17-03-17 22:51:59.088 -07 000000409 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-17 22:51:59.088 -07 000000409 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:51:59.088 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 384 ms.
17-03-17 22:51:59.088 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 22:51:59.088 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:51:59.088 -07 000000409 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:51:59.088 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:51:59.088 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 22:51:59.098 -07 000000409 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 22:51:59.248 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1218
17-03-17 22:51:59.248 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1218
17-03-17 22:51:59.248 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:51:59.248 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1218
17-03-17 22:51:59.248 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1218
17-03-17 22:51:59.248 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:51:59.258 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:51:59.258 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-17 22:51:59.258 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:51:59.258 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 22:51:59.438 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP 1411
17-03-17 22:51:59.438 -07 000000502 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:51:59.438 -07 000000610 INF: FPGA: 'CAMDBLSNAP 461 461 222 222 28246 150' command took 2 ms to send, 1407 ms to get response, and 1418 ms overall
17-03-17 22:51:59.448 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 22:51:59.448 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.349609375, Z-Position -0.128501374067597. ------
17-03-17 22:51:59.568 -07 000000623 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:51:59.568 -07 000000429 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.13499 mm
17-03-17 22:51:59.568 -07 000000429 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:51:59.568 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:51:59.568 -07 000000382 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-17 22:51:59.568 -07 000000382 INF: Y Motor: Moving to 73.1926 mm, started at 72.3496 mm, delta = 0.8430 mm
17-03-17 22:51:59.568 -07 000000541 INF: Z Motor: Entering MoveAbsStepped (DAC = 29488, sync = True, waitForSettling = False)
17-03-17 22:51:59.568 -07 000000541 INF: Z Motor: Moving to -0.134987 mm, started at -0.128501 mm, distance = -6.49 um
17-03-17 22:51:59.578 -07 000000623 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:51:59.578 -07 000000541 INF: FPGA: Xmit ZDACW 29488\n [Z Motor]
17-03-17 22:51:59.578 -07 000000502 INF: FPGA: Recv ZDACW
17-03-17 22:51:59.588 -07 000000541 INF: FPGA: 'ZDACW 29488' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 22:51:59.588 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:51:59.588 -07 000000627 INF: FPGA: Recv YRDPOS 148173
17-03-17 22:51:59.598 -07 000000623 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:51:59.598 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 22:51:59.598 -07 000000382 INF: Y Motor: Encoder = 148173 = motor step 115760.2 = 72.3501 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:51:59.598 -07 000000382 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:51:59.598 -07 000000382 INF: Y Motor: Moving 1348 steps-27
17-03-17 22:51:59.608 -07 000000541 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:51:59.608 -07 000000627 INF: FPGA: Recv ZDACR 29488
17-03-17 22:51:59.618 -07 000000382 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:51:59.618 -07 000000541 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:51:59.618 -07 000000541 INF: Z Motor: MoveAbsStepped took 46 ms (did NOT wait for settling yet))
17-03-17 22:51:59.658 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 397 ms.
17-03-17 22:51:59.658 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 22:51:59.658 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:51:59.658 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 396 ms.
17-03-17 22:51:59.658 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 22:51:59.658 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:51:59.658 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:51:59.658 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-17 22:51:59.658 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:51:59.668 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-17 22:51:59.798 -07 000000415 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:51:59.798 -07 000000623 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 22:51:59.988 -07 000000501 INF: FPGA: Recv YMVTILE
17-03-17 22:51:59.988 -07 000000382 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 391 ms overall
17-03-17 22:52:00.028 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:52:00.038 -07 000000409 INF: FPGA: Recv YRDPOS 149865
17-03-17 22:52:00.038 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 22:52:00.038 -07 000000382 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:52:00.038 -07 000000382 INF: Y Motor: Position error before settling (table move) = -33 encoder counts (-0.016 mm)
17-03-17 22:52:00.038 -07 000000382 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 392 ms, distance = 0.843 mm, average velocity = 2.150 mm/sec
17-03-17 22:52:00.988 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:52:00.988 -07 000000593 INF: FPGA: Recv YRDPOS 149865
17-03-17 22:52:00.998 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:52:00.998 -07 000000382 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:52:01.018 -07 000000382 INF: Y Motor: After move to 73.192604, error = -0.016335, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:52:01.018 -07 000000382 INF: Y Motor: Position error after settling (table move) = -33 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:52:01.018 -07 000000382 INF: Y Motor: Moved to 73.1763 after 1452 ms (table move)
17-03-17 22:52:01.018 -07 000000429 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134987 mm (DAC = 29488)
17-03-17 22:52:01.018 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:52:01.028 -07 000000547 INF: FPGA: Recv ZSGSRD 30301
17-03-17 22:52:01.028 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-17 22:52:01.028 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:52:01.028 -07 000000623 INF: FPGA: Recv ZSGSRD 30305
17-03-17 22:52:01.038 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:52:01.038 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:52:01.038 -07 000000501 INF: FPGA: Recv ZSGSRD 30300
17-03-17 22:52:01.048 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:52:01.048 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:52:01.048 -07 000000415 INF: FPGA: Recv ZSGSRD 30303
17-03-17 22:52:01.058 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:52:01.058 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:52:01.058 -07 000000593 INF: FPGA: Recv ZSGSRD 30304
17-03-17 22:52:01.068 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:52:01.068 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:52:01.068 -07 000000409 INF: FPGA: Recv ZSGSRD 30308
17-03-17 22:52:01.078 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:52:01.078 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:52:01.078 -07 000000448 INF: FPGA: Recv ZSGSRD 30309
17-03-17 22:52:01.088 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:52:01.088 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:52:01.088 -07 000000486 INF: FPGA: Recv ZSGSRD 30305
17-03-17 22:52:01.098 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:52:01.098 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:52:01.098 -07 000000415 INF: FPGA: Recv ZSGSRD 30298
17-03-17 22:52:01.108 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:52:01.108 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:52:01.108 -07 000000547 INF: FPGA: Recv ZSGSRD 30301
17-03-17 22:52:01.118 -07 000000429 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:52:01.118 -07 000000429 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:52:01.118 -07 000000382 INF: FPGA: Recv ZPIEZORD 26268
17-03-17 22:52:01.128 -07 000000429 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:52:01.128 -07 000000429 INF: Z Motor: Piezo is near 36.1 V (nominally 0 to 100 V), expect near 45.0 V, since DAC is at 4.500 V. Piezo Error = -8.9 V.
17-03-17 22:52:01.128 -07 000000429 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.0 um, Read 10 ADC samples: Avg = 30303 (-134.2 uncal um), Error = 0.8 uncal um, Median = 30304 (-134.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30298 (-134.2 uncal um), Max = 30309 (-134.2 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 22:52:01.128 -07 000000429 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30303, posNoise = 6, negNoise = 5
17-03-17 22:52:01.128 -07 000000429 INF: Z Motor: After move to -0.134987, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:52:01.128 -07 000000429 INF: Z Motor: Settle wait time = 1455 ms, measure time = 101 ms (allowed 150 ms), total time = 1556 ms
17-03-17 22:52:01.128 -07 000000429 INF: Z Motor: Waiting extra 49 ms after reading position to reach expected total of 150 ms
17-03-17 22:52:01.178 -07 000000429 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1609 ms
17-03-17 22:52:01.178 -07 000000429 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:52:01.178 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:52:01.178 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:52:01.178 -07 000000482 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:52:01.178 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:52:01.178 -07 000000547 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:52:01.178 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:52:01.178 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:52:01.178 -07 000000547 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:52:01.188 -07 000000547 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:52:01.188 -07 000000547 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:52:01.188 -07 000000547 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 22:52:01.188 -07 000000547 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 22:52:01.198 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:52:01.238 -07 000000486 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:52:01.438 -07 000000482 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:52:01.438 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:52:01.438 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:52:01.438 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 22:52:01.478 -07 000000541 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:52:01.478 -07 000000409 INF: FPGA: Recv CAMSNAP
17-03-17 22:52:01.478 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 284 ms overall
17-03-17 22:52:01.558 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 22:52:01.558 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:52:01.558 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:52:01.558 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 22:52:01.578 -07 000000429 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:52:01.578 -07 000000448 INF: Autofocus start
17-03-17 22:52:01.578 -07 000000448 INF: MeasureProfile start
17-03-17 22:52:01.578 -07 000000486 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:52:01.588 -07 000000429 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:52:01.588 -07 000000429 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:52:01.588 -07 000000448 INF: MeasureProfile done
17-03-17 22:52:01.588 -07 000000448 INF: X=24  Z correction [um]=0.09150101
17-03-17 22:52:01.588 -07 000000448 INF: Autofocus finished
17-03-17 22:52:01.788 -07 000000547 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:52:01.788 -07 000000429 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 197 ms to get response, and 205 ms overall
17-03-17 22:52:01.798 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.17626953125, Z-position -0.134996252542917. ----------
17-03-17 22:52:01.798 -07 000000610 INF: Cycle	68	Tile	17	Exposure Settings		A	461	G	222	T	222	C	461
17-03-17 22:52:01.798 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28020, sync = True, waitForSettling = True)
17-03-17 22:52:01.798 -07 000000610 INF: Z Motor: Moving to -0.128267 mm, started at -0.134996 mm, distance = 6.73 um
17-03-17 22:52:01.798 -07 000000610 INF: FPGA: Xmit ZDACW 28020\n [Z Motor]
17-03-17 22:52:01.798 -07 000000482 INF: FPGA: Recv ZDACW
17-03-17 22:52:01.808 -07 000000610 INF: FPGA: 'ZDACW 28020' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 22:52:01.808 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:52:01.808 -07 000000623 INF: FPGA: Recv ZDACR 28020
17-03-17 22:52:01.818 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:52:01.818 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:52:01.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:52:01.968 -07 000000547 INF: FPGA: Recv ZSGSRD 29259
17-03-17 22:52:01.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:52:01.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:52:01.978 -07 000000541 INF: FPGA: Recv ZSGSRD 29255
17-03-17 22:52:01.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:52:01.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:52:01.988 -07 000000475 INF: FPGA: Recv ZSGSRD 29255
17-03-17 22:52:01.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:52:01.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:52:01.998 -07 000000478 INF: FPGA: Recv ZSGSRD 29260
17-03-17 22:52:02.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:52:02.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:52:02.008 -07 000000501 INF: FPGA: Recv ZSGSRD 29263
17-03-17 22:52:02.008 -07 000000475 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:52:02.008 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 67. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1078, R2=1105, Total=2183. Warn if over 250 bubbles per interval.
17-03-17 22:52:02.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:52:02.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:52:02.018 -07 000000618 INF: FPGA: Recv ZSGSRD 29258
17-03-17 22:52:02.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:52:02.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:52:02.028 -07 000000501 INF: FPGA: Recv ZSGSRD 29251
17-03-17 22:52:02.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:52:02.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:52:02.038 -07 000000415 INF: FPGA: Recv ZSGSRD 29256
17-03-17 22:52:02.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:52:02.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:52:02.048 -07 000000541 INF: FPGA: Recv ZSGSRD 29254
17-03-17 22:52:02.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:52:02.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:52:02.058 -07 000000551 INF: FPGA: Recv ZSGSRD 29258
17-03-17 22:52:02.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:52:02.068 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:52:02.068 -07 000000429 INF: FPGA: Recv ZPIEZORD 24906
17-03-17 22:52:02.078 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:52:02.078 -07 000000610 INF: Z Motor: Piezo is near 33.2 V (nominally 0 to 100 V), expect near 42.8 V, since DAC is at 4.276 V. Piezo Error = -9.6 V.
17-03-17 22:52:02.078 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.3 um, Read 10 ADC samples: Avg = 29257 (-127.5 uncal um), Error = 0.8 uncal um, Median = 29257 (-127.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29251 (-127.5 uncal um), Max = 29263 (-127.5 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 22:52:02.078 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29257, posNoise = 6, negNoise = 6
17-03-17 22:52:02.078 -07 000000610 INF: Z Motor: After move to -0.128267, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:52:02.078 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-17 22:52:02.078 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:52:02.078 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:52:02.078 -07 000000547 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:52:02.078 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:52:02.078 -07 000000593 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:52:02.078 -07 000000551 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:52:02.078 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:52:02.078 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:52:02.078 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 22:52:02.078 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:52:02.078 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:52:02.078 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:52:02.078 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:52:02.088 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:52:02.088 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:52:02.088 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:52:02.098 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-17 22:52:02.098 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 22:52:02.098 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 22:52:02.098 -07 000000551 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 22:52:02.098 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 461 461 222 222 28197 150\n [Camera]
17-03-17 22:52:02.298 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:52:02.758 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 653
17-03-17 22:52:02.758 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 653
17-03-17 22:52:02.768 -07 000000409 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:52:02.768 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 653
17-03-17 22:52:02.768 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 653
17-03-17 22:52:02.768 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:52:02.768 -07 000000409 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:52:02.768 -07 000000409 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-17 22:52:02.768 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:52:02.768 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 22:52:02.958 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28197 846
17-03-17 22:52:03.108 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP turning grn on 996
17-03-17 22:52:03.168 -07 000000409 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 395 ms.
17-03-17 22:52:03.168 -07 000000409 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 22:52:03.168 -07 000000409 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:52:03.168 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 394 ms.
17-03-17 22:52:03.168 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 22:52:03.168 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:52:03.168 -07 000000409 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:52:03.168 -07 000000409 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-17 22:52:03.168 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:52:03.178 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-17 22:52:03.328 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1218
17-03-17 22:52:03.328 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1218
17-03-17 22:52:03.328 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:52:03.328 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:52:03.328 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 656674232, 0x0, 391868352) start.
17-03-17 22:52:03.328 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1218
17-03-17 22:52:03.328 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1218
17-03-17 22:52:03.338 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:52:03.338 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:52:03.338 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 2334002848, 0x0, 418435064) start.
17-03-17 22:52:03.518 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP 1411
17-03-17 22:52:03.518 -07 000000576 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:52:03.518 -07 000000610 INF: FPGA: 'CAMDBLSNAP 461 461 222 222 28197 150' command took 2 ms to send, 1406 ms to get response, and 1418 ms overall
17-03-17 22:52:03.518 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 22:52:03.518 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.17626953125, Z-Position -0.128276526642635. ------
17-03-17 22:52:03.528 -07 000000486 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:52:03.528 -07 000000547 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.13463 mm
17-03-17 22:52:03.528 -07 000000547 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:52:03.528 -07 000000429 INF: Z Motor: Entering MoveAbsStepped (DAC = 29409, sync = True, waitForSettling = False)
17-03-17 22:52:03.528 -07 000000429 INF: Z Motor: Moving to -0.134626 mm, started at -0.128277 mm, distance = -6.35 um
17-03-17 22:52:03.528 -07 000000593 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-17 22:52:03.528 -07 000000593 INF: Y Motor: Moving to 74.0226 mm, started at 73.1763 mm, delta = 0.8463 mm
17-03-17 22:52:03.528 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:52:03.538 -07 000000486 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:52:03.538 -07 000000593 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:52:03.538 -07 000000623 INF: FPGA: Recv YRDPOS 149865
17-03-17 22:52:03.548 -07 000000593 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 22:52:03.548 -07 000000429 INF: FPGA: Xmit ZDACW 29409\n [Z Motor]
17-03-17 22:52:03.548 -07 000000593 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:52:03.548 -07 000000593 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:52:03.548 -07 000000593 INF: Y Motor: Moving 1354 steps-33
17-03-17 22:52:03.548 -07 000000478 INF: FPGA: Recv ZDACW
17-03-17 22:52:03.558 -07 000000486 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:52:03.558 -07 000000429 INF: FPGA: 'ZDACW 29409' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-17 22:52:03.568 -07 000000593 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:52:03.578 -07 000000429 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:52:03.578 -07 000000409 INF: FPGA: Recv ZDACR 29409
17-03-17 22:52:03.588 -07 000000429 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:52:03.588 -07 000000429 INF: Z Motor: MoveAbsStepped took 55 ms (did NOT wait for settling yet))
17-03-17 22:52:03.718 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 2334002848, 0x0, 418435064) end. Duration was 384 ms.
17-03-17 22:52:03.718 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-17 22:52:03.718 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:52:03.718 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 656674232, 0x0, 391868352) end. Duration was 388 ms.
17-03-17 22:52:03.718 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 22:52:03.718 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:52:03.718 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:52:03.728 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:52:03.728 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 22:52:03.728 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 22:52:03.758 -07 000000623 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:52:03.758 -07 000000486 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 22:52:03.938 -07 000000551 INF: FPGA: Recv YMVTILE
17-03-17 22:52:03.938 -07 000000593 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 22:52:03.978 -07 000000593 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:52:03.978 -07 000000551 INF: FPGA: Recv YRDPOS 151569
17-03-17 22:52:03.988 -07 000000593 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:52:03.988 -07 000000593 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:52:03.988 -07 000000593 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-17 22:52:03.988 -07 000000593 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.846 mm, average velocity = 2.132 mm/sec
17-03-17 22:52:04.278 -07 000000429 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 68, FrontChillerTemperature: 3.986717,
17-03-17 22:52:04.938 -07 000000593 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:52:04.938 -07 000000482 INF: FPGA: Recv YRDPOS 151569
17-03-17 22:52:04.948 -07 000000593 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:52:04.948 -07 000000593 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:52:04.958 -07 000000593 INF: Y Motor: After move to 74.022606, error = -0.014305, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:52:04.958 -07 000000593 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:52:04.968 -07 000000593 INF: Y Motor: Moved to 74.0083 after 1434 ms (table move)
17-03-17 22:52:04.968 -07 000000547 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134626 mm (DAC = 29409)
17-03-17 22:52:04.968 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:52:04.968 -07 000000462 INF: FPGA: Recv ZSGSRD 30247
17-03-17 22:52:04.978 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:52:04.978 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:52:04.978 -07 000000623 INF: FPGA: Recv ZSGSRD 30246
17-03-17 22:52:04.988 -07 000000547 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:52:04.988 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:52:04.988 -07 000000501 INF: FPGA: Recv ZSGSRD 30245
17-03-17 22:52:04.998 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:52:04.998 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:52:04.998 -07 000000409 INF: FPGA: Recv ZSGSRD 30251
17-03-17 22:52:05.008 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:52:05.008 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:52:05.008 -07 000000478 INF: FPGA: Recv ZSGSRD 30250
17-03-17 22:52:05.018 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:52:05.018 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:52:05.018 -07 000000618 INF: FPGA: Recv ZSGSRD 30243
17-03-17 22:52:05.028 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:52:05.028 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:52:05.028 -07 000000448 INF: FPGA: Recv ZSGSRD 30248
17-03-17 22:52:05.038 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:52:05.038 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:52:05.038 -07 000000486 INF: FPGA: Recv ZSGSRD 30247
17-03-17 22:52:05.048 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:52:05.048 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:52:05.048 -07 000000593 INF: FPGA: Recv ZSGSRD 30241
17-03-17 22:52:05.058 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:52:05.058 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:52:05.058 -07 000000462 INF: FPGA: Recv ZSGSRD 30245
17-03-17 22:52:05.068 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:52:05.068 -07 000000547 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:52:05.068 -07 000000627 INF: FPGA: Recv ZPIEZORD 26220
17-03-17 22:52:05.078 -07 000000547 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:52:05.078 -07 000000547 INF: Z Motor: Piezo is near 36.0 V (nominally 0 to 100 V), expect near 44.9 V, since DAC is at 4.488 V. Piezo Error = -8.9 V.
17-03-17 22:52:05.078 -07 000000547 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.6 um, Read 10 ADC samples: Avg = 30246 (-133.8 uncal um), Error = 0.8 uncal um, Median = 30246 (-133.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 30241 (-133.8 uncal um), Max = 30251 (-133.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 22:52:05.078 -07 000000547 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30246, posNoise = 5, negNoise = 5
17-03-17 22:52:05.078 -07 000000547 INF: Z Motor: After move to -0.134626, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:52:05.078 -07 000000547 INF: Z Motor: Settle wait time = 1438 ms, measure time = 107 ms (allowed 150 ms), total time = 1545 ms
17-03-17 22:52:05.078 -07 000000547 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 22:52:05.128 -07 000000547 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1597 ms
17-03-17 22:52:05.128 -07 000000547 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:52:05.128 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:52:05.128 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:52:05.128 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:52:05.128 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:52:05.128 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:52:05.128 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:52:05.128 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 22:52:05.128 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:52:05.138 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:52:05.138 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:52:05.138 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 22:52:05.138 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-17 22:52:05.148 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:52:05.198 -07 000000618 INF: FPGA: Recv @CAMSNAP turning led on 43
17-03-17 22:52:05.388 -07 000000448 INF: FPGA: Recv @CAMSNAP img rdy 243
17-03-17 22:52:05.388 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 243
17-03-17 22:52:05.398 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:52:05.398 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2268957512, 0x0, 559484976) start.
17-03-17 22:52:05.428 -07 000000576 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:52:05.428 -07 000000482 INF: FPGA: Recv CAMSNAP
17-03-17 22:52:05.428 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 284 ms overall
17-03-17 22:52:05.508 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2268957512, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 22:52:05.508 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:52:05.508 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 22:52:05.508 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 22:52:05.528 -07 000000627 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:52:05.528 -07 000000547 INF: Autofocus start
17-03-17 22:52:05.528 -07 000000547 INF: MeasureProfile start
17-03-17 22:52:05.528 -07 000000482 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:52:05.538 -07 000000627 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 22:52:05.538 -07 000000627 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:52:05.548 -07 000000547 INF: MeasureProfile done
17-03-17 22:52:05.548 -07 000000547 INF: X=0  Z correction [um]=-0.02394831
17-03-17 22:52:05.548 -07 000000547 INF: Autofocus finished
17-03-17 22:52:05.738 -07 000000382 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:52:05.738 -07 000000627 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:52:05.738 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.00830078125, Z-position -0.134630072450837. ----------
17-03-17 22:52:05.738 -07 000000610 INF: Cycle	68	Tile	18	Exposure Settings		A	461	G	222	T	222	C	461
17-03-17 22:52:05.748 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27916, sync = True, waitForSettling = True)
17-03-17 22:52:05.748 -07 000000610 INF: Z Motor: Moving to -0.127791 mm, started at -0.134630 mm, distance = 6.84 um
17-03-17 22:52:05.748 -07 000000610 INF: FPGA: Xmit ZDACW 27916\n [Z Motor]
17-03-17 22:52:05.748 -07 000000618 INF: FPGA: Recv ZDACW
17-03-17 22:52:05.758 -07 000000610 INF: FPGA: 'ZDACW 27916' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:52:05.758 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:52:05.758 -07 000000623 INF: FPGA: Recv ZDACR 27916
17-03-17 22:52:05.768 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:52:05.768 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:52:05.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:52:05.918 -07 000000593 INF: FPGA: Recv ZSGSRD 29185
17-03-17 22:52:05.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:52:05.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:52:05.928 -07 000000429 INF: FPGA: Recv ZSGSRD 29182
17-03-17 22:52:05.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:52:05.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:52:05.938 -07 000000486 INF: FPGA: Recv ZSGSRD 29181
17-03-17 22:52:05.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:52:05.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:52:05.948 -07 000000551 INF: FPGA: Recv ZSGSRD 29182
17-03-17 22:52:05.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:52:05.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:52:05.958 -07 000000541 INF: FPGA: Recv ZSGSRD 29182
17-03-17 22:52:05.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:52:05.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:52:05.968 -07 000000576 INF: FPGA: Recv ZSGSRD 29183
17-03-17 22:52:05.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:52:05.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:52:05.978 -07 000000502 INF: FPGA: Recv ZSGSRD 29176
17-03-17 22:52:05.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:52:05.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:52:05.988 -07 000000415 INF: FPGA: Recv ZSGSRD 29186
17-03-17 22:52:05.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:52:05.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:52:05.998 -07 000000475 INF: FPGA: Recv ZSGSRD 29183
17-03-17 22:52:06.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:52:06.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:52:06.008 -07 000000623 INF: FPGA: Recv ZSGSRD 29182
17-03-17 22:52:06.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:52:06.018 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:52:06.018 -07 000000382 INF: FPGA: Recv ZPIEZORD 24807
17-03-17 22:52:06.028 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:52:06.028 -07 000000610 INF: Z Motor: Piezo is near 33.0 V (nominally 0 to 100 V), expect near 42.6 V, since DAC is at 4.260 V. Piezo Error = -9.6 V.
17-03-17 22:52:06.028 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.8 um, Read 10 ADC samples: Avg = 29182 (-127.0 uncal um), Error = 0.8 uncal um, Median = 29182 (-127.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29176 (-127.0 uncal um), Max = 29186 (-127.0 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 22:52:06.028 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29182, posNoise = 4, negNoise = 6
17-03-17 22:52:06.028 -07 000000610 INF: Z Motor: After move to -0.127791, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:52:06.028 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 22:52:06.028 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:52:06.028 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:52:06.028 -07 000000415 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:52:06.028 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:52:06.028 -07 000000486 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:52:06.028 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:52:06.028 -07 000000541 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:52:06.028 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:52:06.028 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 22:52:06.028 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:52:06.028 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:52:06.028 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:52:06.038 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:52:06.038 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:52:06.038 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:52:06.038 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:52:06.048 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 22:52:06.048 -07 000000486 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 22:52:06.048 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 22:52:06.048 -07 000000541 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 22:52:06.048 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 461 461 222 222 28093 150\n [Camera]
17-03-17 22:52:06.248 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:52:06.708 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 653
17-03-17 22:52:06.708 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 653
17-03-17 22:52:06.708 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:52:06.708 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:52:06.708 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 2378235720, 0x0, 391868352) start.
17-03-17 22:52:06.708 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 653
17-03-17 22:52:06.708 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 653
17-03-17 22:52:06.718 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:52:06.718 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:52:06.718 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-17 22:52:06.898 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28093 846
17-03-17 22:52:07.008 -07 000000415 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:52:07.018 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 67. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1078, R2=1105, Total=2183. Warn if over 250 bubbles per interval.
17-03-17 22:52:07.048 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP turning grn on 996
17-03-17 22:52:07.098 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 2378235720, 0x0, 391868352) end. Duration was 382 ms.
17-03-17 22:52:07.098 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 22:52:07.098 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:52:07.098 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 381 ms.
17-03-17 22:52:07.098 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-17 22:52:07.098 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:52:07.098 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:52:07.098 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 22:52:07.098 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 22:52:07.108 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 22:52:07.278 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1218
17-03-17 22:52:07.278 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1218
17-03-17 22:52:07.278 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:52:07.278 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:52:07.278 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start.
17-03-17 22:52:07.278 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1218
17-03-17 22:52:07.278 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1218
17-03-17 22:52:07.278 -07 000000409 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:52:07.278 -07 000000409 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:52:07.278 -07 000000409 INF: Camera: sBCa_ReadImage(785074704, 1165594328, 0x0, 418435064) start.
17-03-17 22:52:07.468 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP 1410
17-03-17 22:52:07.468 -07 000000551 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:52:07.468 -07 000000610 INF: FPGA: 'CAMDBLSNAP 461 461 222 222 28093 150' command took 2 ms to send, 1413 ms to get response, and 1417 ms overall
17-03-17 22:52:07.468 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 22:52:07.468 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.00830078125, Z-Position -0.127794710732003. ------
17-03-17 22:52:07.468 -07 000000448 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:52:07.468 -07 000000429 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.13428 mm
17-03-17 22:52:07.468 -07 000000429 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:52:07.478 -07 000000486 INF: Z Motor: Entering MoveAbsStepped (DAC = 29334, sync = True, waitForSettling = False)
17-03-17 22:52:07.478 -07 000000486 INF: Z Motor: Moving to -0.134282 mm, started at -0.127795 mm, distance = -6.49 um
17-03-17 22:52:07.588 -07 000000502 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-17 22:52:07.588 -07 000000502 INF: Y Motor: Moving to 74.8526 mm, started at 74.0083 mm, delta = 0.8443 mm
17-03-17 22:52:07.588 -07 000000551 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:52:07.588 -07 000000448 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 117 ms to get response, and 120 ms overall
17-03-17 22:52:07.588 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:52:07.598 -07 000000448 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:52:07.598 -07 000000627 INF: FPGA: Recv YRDPOS 151569
17-03-17 22:52:07.598 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:52:07.598 -07 000000502 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:52:07.598 -07 000000502 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:52:07.598 -07 000000502 INF: Y Motor: Moving 1351 steps-29
17-03-17 22:52:07.608 -07 000000486 INF: FPGA: Xmit ZDACW 29334\n [Z Motor]
17-03-17 22:52:07.608 -07 000000475 INF: FPGA: Recv ZDACW
17-03-17 22:52:07.618 -07 000000486 INF: FPGA: 'ZDACW 29334' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-17 22:52:07.618 -07 000000502 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:52:07.628 -07 000000486 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:52:07.628 -07 000000475 INF: FPGA: Recv ZDACR 29334
17-03-17 22:52:07.638 -07 000000486 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:52:07.638 -07 000000486 INF: Z Motor: MoveAbsStepped took 159 ms (did NOT wait for settling yet))
17-03-17 22:52:07.678 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 399 ms.
17-03-17 22:52:07.678 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 22:52:07.678 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:52:07.678 -07 000000409 INF: Camera: sBCa_ReadImage(785074704, 1165594328, 0x0, 418435064) end. Duration was 398 ms.
17-03-17 22:52:07.678 -07 000000409 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 22:52:07.678 -07 000000409 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:52:07.678 -07 000000409 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:52:07.688 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 22:52:07.688 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-17 22:52:07.688 -07 000000409 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-17 22:52:07.798 -07 000000501 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:52:07.798 -07 000000448 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 204 ms overall
17-03-17 22:52:07.988 -07 000000415 INF: FPGA: Recv YMVTILE
17-03-17 22:52:07.988 -07 000000502 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 397 ms overall
17-03-17 22:52:08.018 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:52:08.018 -07 000000478 INF: FPGA: Recv YRDPOS 153256
17-03-17 22:52:08.028 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 22:52:08.028 -07 000000502 INF: Y Motor: Encoder = 153256 = motor step 119731.3 = 74.8320 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:52:08.028 -07 000000502 INF: Y Motor: Position error before settling (table move) = -42 encoder counts (-0.021 mm)
17-03-17 22:52:08.028 -07 000000502 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.844 mm, average velocity = 2.127 mm/sec
17-03-17 22:52:08.978 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:52:08.978 -07 000000593 INF: FPGA: Recv YRDPOS 153257
17-03-17 22:52:08.988 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:52:08.988 -07 000000502 INF: Y Motor: Encoder = 153257 = motor step 119732.0 = 74.8325 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:52:08.998 -07 000000502 INF: Y Motor: After move to 74.852608, error = -0.020088, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:52:08.998 -07 000000502 INF: Y Motor: Position error after settling (table move) = -41 encoder counts (-0.020 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 22:52:08.998 -07 000000502 INF: Y Motor: Moved to 74.8325 after 1410 ms (table move)
17-03-17 22:52:09.008 -07 000000429 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134282 mm (DAC = 29334)
17-03-17 22:52:09.008 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:52:09.008 -07 000000541 INF: FPGA: Recv ZSGSRD 30197
17-03-17 22:52:09.018 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:52:09.018 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:52:09.018 -07 000000482 INF: FPGA: Recv ZSGSRD 30190
17-03-17 22:52:09.028 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:52:09.028 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:52:09.028 -07 000000409 INF: FPGA: Recv ZSGSRD 30188
17-03-17 22:52:09.038 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:52:09.038 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:52:09.038 -07 000000478 INF: FPGA: Recv ZSGSRD 30193
17-03-17 22:52:09.048 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:52:09.048 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:52:09.048 -07 000000415 INF: FPGA: Recv ZSGSRD 30193
17-03-17 22:52:09.058 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:52:09.058 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:52:09.058 -07 000000541 INF: FPGA: Recv ZSGSRD 30200
17-03-17 22:52:09.068 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:52:09.068 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:52:09.068 -07 000000482 INF: FPGA: Recv ZSGSRD 30202
17-03-17 22:52:09.078 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:52:09.078 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:52:09.078 -07 000000409 INF: FPGA: Recv ZSGSRD 30197
17-03-17 22:52:09.088 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:52:09.088 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:52:09.088 -07 000000478 INF: FPGA: Recv ZSGSRD 30196
17-03-17 22:52:09.098 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:52:09.098 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:52:09.098 -07 000000415 INF: FPGA: Recv ZSGSRD 30187
17-03-17 22:52:09.108 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:52:09.108 -07 000000429 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:52:09.108 -07 000000551 INF: FPGA: Recv ZPIEZORD 26174
17-03-17 22:52:09.118 -07 000000429 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:52:09.118 -07 000000429 INF: Z Motor: Piezo is near 35.9 V (nominally 0 to 100 V), expect near 44.8 V, since DAC is at 4.476 V. Piezo Error = -8.8 V.
17-03-17 22:52:09.118 -07 000000429 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.3 um, Read 10 ADC samples: Avg = 30194 (-133.5 uncal um), Error = 0.8 uncal um, Median = 30194 (-133.5 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30187 (-133.5 uncal um), Max = 30202 (-133.6 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 22:52:09.118 -07 000000429 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30194, posNoise = 8, negNoise = 7
17-03-17 22:52:09.118 -07 000000429 INF: Z Motor: After move to -0.134282, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:52:09.118 -07 000000429 INF: Z Motor: Settle wait time = 1415 ms, measure time = 108 ms (allowed 150 ms), total time = 1523 ms
17-03-17 22:52:09.118 -07 000000429 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-17 22:52:09.168 -07 000000429 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1692 ms
17-03-17 22:52:09.168 -07 000000429 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:52:09.168 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:52:09.168 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:52:09.168 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:52:09.168 -07 000000593 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:52:09.168 -07 000000415 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:52:09.168 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:52:09.178 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 22:52:09.178 -07 000000415 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:52:09.178 -07 000000415 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:52:09.178 -07 000000415 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:52:09.178 -07 000000415 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 22:52:09.178 -07 000000415 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 22:52:09.188 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:52:09.228 -07 000000502 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:52:09.428 -07 000000547 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:52:09.428 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:52:09.428 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:52:09.428 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 22:52:09.468 -07 000000478 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:52:09.468 -07 000000486 INF: FPGA: Recv CAMSNAP
17-03-17 22:52:09.468 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 284 ms overall
17-03-17 22:52:09.548 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 22:52:09.548 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:52:09.548 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 22:52:09.548 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-17 22:52:09.568 -07 000000502 INF: Autofocus start
17-03-17 22:52:09.568 -07 000000502 INF: MeasureProfile start
17-03-17 22:52:09.568 -07 000000547 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:52:09.568 -07 000000486 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:52:09.578 -07 000000547 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:52:09.578 -07 000000547 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:52:09.578 -07 000000502 INF: MeasureProfile done
17-03-17 22:52:09.578 -07 000000502 INF: X=-6  Z correction [um]=-0.03260989
17-03-17 22:52:09.578 -07 000000502 INF: Autofocus finished
17-03-17 22:52:09.638 -07 000000627 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 68, FrontChillerTemperature: 4.009895,
17-03-17 22:52:09.778 -07 000000502 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:52:09.778 -07 000000547 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:52:09.778 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83251953125, Z-position -0.134296013419465. ----------
17-03-17 22:52:09.778 -07 000000610 INF: Cycle	68	Tile	19	Exposure Settings		A	461	G	222	T	222	C	461
17-03-17 22:52:09.788 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27840, sync = True, waitForSettling = True)
17-03-17 22:52:09.788 -07 000000610 INF: Z Motor: Moving to -0.127443 mm, started at -0.134296 mm, distance = 6.85 um
17-03-17 22:52:09.798 -07 000000610 INF: FPGA: Xmit ZDACW 27840\n [Z Motor]
17-03-17 22:52:09.798 -07 000000627 INF: FPGA: Recv ZDACW
17-03-17 22:52:09.808 -07 000000610 INF: FPGA: 'ZDACW 27840' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:52:09.808 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:52:09.808 -07 000000576 INF: FPGA: Recv ZDACR 27840
17-03-17 22:52:09.818 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:52:09.818 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:52:09.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:52:09.968 -07 000000429 INF: FPGA: Recv ZSGSRD 29128
17-03-17 22:52:09.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:52:09.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:52:09.978 -07 000000593 INF: FPGA: Recv ZSGSRD 29129
17-03-17 22:52:09.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:52:09.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:52:09.988 -07 000000501 INF: FPGA: Recv ZSGSRD 29130
17-03-17 22:52:09.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:52:09.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:52:09.998 -07 000000448 INF: FPGA: Recv ZSGSRD 29135
17-03-17 22:52:10.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:52:10.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:52:10.008 -07 000000547 INF: FPGA: Recv ZSGSRD 29131
17-03-17 22:52:10.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:52:10.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:52:10.018 -07 000000409 INF: FPGA: Recv ZSGSRD 29129
17-03-17 22:52:10.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:52:10.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:52:10.028 -07 000000623 INF: FPGA: Recv ZSGSRD 29132
17-03-17 22:52:10.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:52:10.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:52:10.038 -07 000000382 INF: FPGA: Recv ZSGSRD 29132
17-03-17 22:52:10.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:52:10.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:52:10.048 -07 000000409 INF: FPGA: Recv ZSGSRD 29132
17-03-17 22:52:10.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:52:10.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:52:10.058 -07 000000429 INF: FPGA: Recv ZSGSRD 29122
17-03-17 22:52:10.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:52:10.068 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:52:10.068 -07 000000462 INF: FPGA: Recv ZPIEZORD 24759
17-03-17 22:52:10.078 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:52:10.078 -07 000000610 INF: Z Motor: Piezo is near 32.9 V (nominally 0 to 100 V), expect near 42.5 V, since DAC is at 4.248 V. Piezo Error = -9.6 V.
17-03-17 22:52:10.078 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.4 um, Read 10 ADC samples: Avg = 29130 (-126.7 uncal um), Error = 0.8 uncal um, Median = 29130 (-126.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29122 (-126.6 uncal um), Max = 29135 (-126.7 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 22:52:10.078 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29130, posNoise = 5, negNoise = 8
17-03-17 22:52:10.078 -07 000000610 INF: Z Motor: After move to -0.127443, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:52:10.078 -07 000000610 INF: Z Motor: MoveAbsStepped took 292 ms)
17-03-17 22:52:10.078 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:52:10.078 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:52:10.078 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:52:10.078 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:52:10.078 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:52:10.078 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:52:10.078 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:52:10.078 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:52:10.088 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:52:10.088 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:52:10.088 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:52:10.088 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:52:10.088 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 22:52:10.088 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 22:52:10.088 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:52:10.088 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:52:10.098 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 12 ms.
17-03-17 22:52:10.098 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 22:52:10.098 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 13 ms.
17-03-17 22:52:10.098 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 22:52:10.128 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 461 461 222 222 28016 150\n [Camera]
17-03-17 22:52:10.318 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:52:10.788 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 653
17-03-17 22:52:10.788 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 653
17-03-17 22:52:10.788 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:52:10.788 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:52:10.788 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-17 22:52:10.788 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 653
17-03-17 22:52:10.788 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 653
17-03-17 22:52:10.788 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:52:10.798 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:52:10.798 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 22:52:10.978 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28016 846
17-03-17 22:52:11.128 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning grn on 996
17-03-17 22:52:11.168 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 376 ms.
17-03-17 22:52:11.168 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 22:52:11.168 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:52:11.178 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 384 ms.
17-03-17 22:52:11.178 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 22:52:11.178 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:52:11.178 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:52:11.178 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:52:11.178 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 22:52:11.178 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 22:52:11.348 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1218
17-03-17 22:52:11.348 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1218
17-03-17 22:52:11.348 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:52:11.348 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1218
17-03-17 22:52:11.348 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1218
17-03-17 22:52:11.358 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:52:11.358 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:52:11.358 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-17 22:52:11.358 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:52:11.358 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 22:52:11.538 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP 1411
17-03-17 22:52:11.538 -07 000000486 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:52:11.538 -07 000000610 INF: FPGA: 'CAMDBLSNAP 461 461 222 222 28016 150' command took 2 ms to send, 1408 ms to get response, and 1434 ms overall
17-03-17 22:52:11.758 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 399 ms.
17-03-17 22:52:11.758 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 22:52:11.758 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:52:11.758 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 398 ms.
17-03-17 22:52:11.758 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 22:52:11.758 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:52:11.758 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:52:11.758 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-17 22:52:11.758 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-17 22:52:11.758 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:52:11.768 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 417 ms.
17-03-17 22:52:11.808 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 42 ms.
17-03-17 22:52:11.808 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-17 22:52:11.848 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 43 ms.
17-03-17 22:52:11.858 -07 000000610 INF: Enabling Skipping AutoFocus in the next 0 cycles.
17-03-17 22:52:11.858 -07 000000610 INF: Imaging Cycle 68: ScanTilesCommand Cycle 68 time end. Duration was 160628 ms.
17-03-17 22:52:11.858 -07 000000610 INF: =================== Cycle #68 ===================
17-03-17 22:52:11.858 -07 000000610 INF: ===================  ===================
17-03-17 22:52:11.858 -07 000000576 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-17 22:52:11.868 -07 000000415 INF: FPGA: Recv EXLED1ADCR 24
17-03-17 22:52:11.868 -07 000000576 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 22:52:11.868 -07 000000576 INF: GreenLED: Using Green data: Photodiode ADC 24 --> 0.0 mW (old method), or 1.7 mW (new method). Difference = 1.7 mW
17-03-17 22:52:11.868 -07 000000576 INF: Predictive Diagnostic Log Cycle Entry Metrics: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 68, FrontChillerTemperature: 4.009895, FrontChillerHeatSinkTemperature: 0.458782, AmbientTemperature: 18.8606, FlowCellCompartmentTemperature: 21.99399, FlowCellTargetTemperature: 22, FlowCellHeatSinkTemperature: 18.5803, GreenLEDSensorTemperature: 26.65396, PhotodiodePowerAdcGreen: 24, PhotodiodePowerMwGreen: 1.744678
17-03-17 22:52:11.918 -07 000000610 INF: Y-Drift Offset assigned 0.002126916.