17-03-17 22:52:11.968 -07 000000610 INF: =================== Cycle #69 ===================
17-03-17 22:52:11.968 -07 000000610 INF: Y Motor: Entering MoveAbsStepped (target = 120609 steps, sync = True, waitForSettling = True)
17-03-17 22:52:11.968 -07 000000610 INF: Y Motor: Moving to 75.3806 mm, started at 74.8325 mm, delta = 0.5481 mm
17-03-17 22:52:11.968 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:52:11.968 -07 000000547 INF: FPGA: Recv YRDPOS 153257
17-03-17 22:52:11.978 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 22:52:11.978 -07 000000610 INF: Y Motor: Encoder = 153257 = motor step 119732.0 = 74.8325 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:52:11.978 -07 000000610 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = 0.5280 mm (844.8 steps). UsingTableMove = False
17-03-17 22:52:11.978 -07 000000610 INF: Y Motor: Moving to 154379 encoder counts
17-03-17 22:52:11.978 -07 000000610 INF: FPGA: Xmit YMVTO 154379\n [Y Motor]
17-03-17 22:52:12.008 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:52:12.018 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 68. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1078, R2=1105, Total=2183. Warn if over 250 bubbles per interval.
17-03-17 22:52:12.088 -07 000000627 INF: FPGA: Recv YMVTO 154377 870
17-03-17 22:52:12.088 -07 000000610 INF: FPGA: 'YMVTO 154379' command took 0 ms to send, 107 ms to get response, and 116 ms overall
17-03-17 22:52:12.088 -07 000000610 INF: Y Motor: Position error before settling = -2 encoder counts (-0.001 mm)
17-03-17 22:52:12.088 -07 000000610 INF: Y Motor: To move from 74.833 to 75.381 (0.548 mm) should take 877 steps, but required 870 steps (0.544 mm). Slippage = -0.004 mm (-0.01%).
17-03-17 22:52:12.088 -07 000000610 INF: Y Motor: FPGA move command 'YMVTO 154379' took 116 ms, distance = 0.548 mm, average velocity = 4.725 mm/sec
17-03-17 22:52:14.998 -07 000000482 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 69, FrontChillerTemperature: 4.008536,
17-03-17 22:52:15.088 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:52:15.088 -07 000000541 INF: FPGA: Recv YRDPOS 154378
17-03-17 22:52:15.098 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:52:15.098 -07 000000610 INF: Y Motor: Encoder = 154378 = motor step 120607.8 = 75.3799 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:52:15.108 -07 000000610 INF: Y Motor: After move to 75.380580, error = -0.000697, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:52:15.108 -07 000000610 INF: Y Motor: Position error after settling = -1 encoder counts (0.000 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 22:52:15.108 -07 000000610 INF: Y Motor: Moved to 75.3799 after 3144 ms
17-03-17 22:52:15.118 -07 000000610 INF: =================== Cycle #69, Flow Cell Temp 60° ===================
17-03-17 22:52:15.118 -07 000000610 INF: =================== Cycle #69, Flow Cell Temp 60°, FC temperature to 60° ===================
17-03-17 22:52:15.118 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 60000000\n [FlowCellTempControl]
17-03-17 22:52:15.118 -07 000000551 INF: FPGA: Recv TEC2TEMP 
17-03-17 22:52:15.128 -07 000000610 INF: FPGA: 'TEC2TEMP 0 60000000' command took 1 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:52:15.128 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 22:52:15.128 -07 000000593 INF: FPGA: Recv TEC2EN 
17-03-17 22:52:15.138 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:52:15.138 -07 000000610 INF: =================== Cycle #69, Flow Cell Temp 60° ===================
17-03-17 22:52:15.138 -07 000000610 INF: =================== Cycle #69 ===================
17-03-17 22:52:15.138 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 22:52:15.138 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 22:52:15.168 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-17 22:52:15.168 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 24 to 3. Moving 3 positions.
17-03-17 22:52:15.168 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 22:52:15.468 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 22:52:15.488 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-17 22:52:15.488 -07 000000610 INF: ReagentValve: Move+ from 24 to 3 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-17 22:52:15.538 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 22:52:15.558 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 22:52:15.558 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 22:52:15.658 -07 000000610 INF: =================== Cycle #69, Pumping Reagent PR2 (3) ===================
17-03-17 22:52:15.658 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-17 22:52:15.778 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:52:15.808 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 22:52:15.808 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 22:52:15.808 -07 000000610 INF: =================== Cycle #69, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 22:52:15.938 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-17 22:52:15.978 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:52:17.008 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:52:17.018 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 68. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1078, R2=1105, Total=2183. Warn if over 250 bubbles per interval.
17-03-17 22:52:19.108 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:52:19.138 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:52:19.558 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:52:19.588 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:52:20.008 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:52:20.038 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:52:20.038 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-17 22:52:20.038 -07 000000610 INF: =================== Cycle #69, Pumping Reagent PR2 (3) ===================
17-03-17 22:52:20.168 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:52:20.198 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 22:52:20.198 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 22:52:20.328 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:52:20.358 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 22:52:20.358 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 22:52:20.358 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 22:52:20.358 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 69, FrontChillerTemperature: 4.031682,
17-03-17 22:52:20.488 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 22:52:20.518 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:52:20.948 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:52:20.978 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:52:20.978 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 22:52:20.978 -07 000000610 INF: =================== Cycle #69 ===================
17-03-17 22:52:22.018 -07 000000475 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 7 R1 3
17-03-17 22:52:22.018 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 68. Bubbles during last 5000 ms interval: R1=3, R2=7, Total=10. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1081, R2=1112, Total=2193. Warn if over 250 bubbles per interval.
17-03-17 22:52:22.198 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 22:52:22.198 -07 000000610 INF: ReagentValve: Go to position 4 - PumpToFlowcell start
17-03-17 22:52:22.198 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 22:52:22.218 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 22:52:22.218 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 3 to 4. Moving 1 positions.
17-03-17 22:52:22.218 -07 000000610 INF: ReagentValve: Xmit +04\r
17-03-17 22:52:22.348 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 22:52:22.368 -07 000000610 INF: ReagentValve: Recv 00CD\r
17-03-17 22:52:22.368 -07 000000610 INF: ReagentValve: Move+ from 3 to 4 took 205 steps, expected 204. Error = 1 steps (0.5%)
17-03-17 22:52:22.418 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 22:52:22.438 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-17 22:52:22.438 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 22:52:22.538 -07 000000610 INF: =================== Cycle #69, Pumping Reagent CMS (4) ===================
17-03-17 22:52:22.538 -07 000000610 INF: LanePump: Pumping from 4, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 22:52:22.538 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:52:22.568 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 22:52:22.568 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 22:52:22.568 -07 000000610 INF: =================== Cycle #69, Pumping Reagent CMS (4), Aspirating port InputPort ===================
17-03-17 22:52:22.698 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 22:52:22.738 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:52:24.178 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:52:24.208 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:52:24.628 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:52:24.658 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:52:24.658 -07 000000610 INF: LanePump: Waited 1920 ms for pump motion to complete
17-03-17 22:52:24.658 -07 000000610 INF: =================== Cycle #69, Pumping Reagent CMS (4) ===================
17-03-17 22:52:24.788 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:52:24.818 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 22:52:24.818 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 22:52:24.948 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:52:24.978 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 22:52:24.978 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 22:52:24.978 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 22:52:25.108 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 22:52:25.138 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:52:25.568 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:52:25.598 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:52:25.598 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 22:52:25.598 -07 000000610 INF: =================== Cycle #69 ===================
17-03-17 22:52:25.718 -07 000000448 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 69, FrontChillerTemperature: 3.99219,
17-03-17 22:52:26.818 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 22:52:26.818 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 22:52:26.818 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 22:52:26.838 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-17 22:52:26.838 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 4 to 3. Moving 1 positions.
17-03-17 22:52:26.838 -07 000000610 INF: ReagentValve: Xmit -03\r
17-03-17 22:52:26.988 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 22:52:27.008 -07 000000610 INF: ReagentValve: Recv 00E1\r
17-03-17 22:52:27.008 -07 000000610 INF: ReagentValve: Move- from 4 to 3 took 225 steps, expected 204. Error = 21 steps (10.3%)
17-03-17 22:52:27.018 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 3 R1 5
17-03-17 22:52:27.018 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 68. Bubbles during last 5000 ms interval: R1=5, R2=3, Total=8. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1086, R2=1115, Total=2201. Warn if over 250 bubbles per interval.
17-03-17 22:52:27.058 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 22:52:27.078 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 22:52:27.078 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 22:52:27.178 -07 000000610 INF: =================== Cycle #69, Pumping Reagent PR2 (3) ===================
17-03-17 22:52:27.178 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 22:52:27.178 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:52:27.208 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 22:52:27.208 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 22:52:27.208 -07 000000610 INF: =================== Cycle #69, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 22:52:27.338 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 22:52:27.378 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:52:28.248 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:52:28.278 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:52:28.278 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-17 22:52:28.278 -07 000000610 INF: =================== Cycle #69, Pumping Reagent PR2 (3) ===================
17-03-17 22:52:28.408 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:52:28.438 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 22:52:28.438 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 22:52:28.568 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:52:28.598 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 22:52:28.598 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 22:52:28.598 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 22:52:28.728 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 22:52:28.758 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:52:29.188 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:52:29.218 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:52:29.218 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 22:52:29.218 -07 000000610 INF: =================== Cycle #69 ===================
17-03-17 22:52:29.218 -07 000000541 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 22:52:29.218 -07 000000541 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 22:52:29.218 -07 000000502 INF: WaitCommand(10000) start
17-03-17 22:52:30.438 -07 000000541 INF: AsyncDelayTimer waited 1214ms
17-03-17 22:52:30.438 -07 000000541 INF: LanePump: Xmit /1?\r
17-03-17 22:52:30.468 -07 000000541 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 22:52:30.468 -07 000000541 INF: LanePump: Current Position of Pump is: 1110
17-03-17 22:52:30.598 -07 000000541 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 22:52:30.638 -07 000000541 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:52:31.078 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 69, FrontChillerTemperature: 3.974486,
17-03-17 22:52:32.018 -07 000000593 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 3 R1 0
17-03-17 22:52:32.018 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 68. Bubbles during last 5000 ms interval: R1=0, R2=3, Total=3. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1086, R2=1118, Total=2204. Warn if over 250 bubbles per interval.
17-03-17 22:52:32.168 -07 000000541 INF: LanePump: Xmit /1Q\r
17-03-17 22:52:32.198 -07 000000541 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:52:32.618 -07 000000541 INF: LanePump: Xmit /1Q\r
17-03-17 22:52:32.648 -07 000000541 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:52:32.648 -07 000000541 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-17 22:52:32.648 -07 000000541 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 22:52:32.648 -07 000000541 INF: ===================  ===================
17-03-17 22:52:36.438 -07 000000409 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 69, FrontChillerTemperature: 3.974486,
17-03-17 22:52:37.018 -07 000000593 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:52:37.018 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 68. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1086, R2=1118, Total=2204. Warn if over 250 bubbles per interval.
17-03-17 22:52:39.228 -07 000000502 INF: WaitCommand(10000) end
17-03-17 22:52:39.228 -07 000000610 INF: =================== Cycle #69, Pumping Reagent PR2 (3) ===================
17-03-17 22:52:39.228 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 250 µL, calling command Pumping to Flow Cell #1
17-03-17 22:52:39.228 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:52:39.258 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 22:52:39.258 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 22:52:39.258 -07 000000610 INF: =================== Cycle #69, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 22:52:39.388 -07 000000610 INF: LanePump: Xmit /1V400IP1500R\r
17-03-17 22:52:39.428 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:52:41.798 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 69, FrontChillerTemperature: 3.975845,
17-03-17 22:52:42.018 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:52:42.018 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 68. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1086, R2=1118, Total=2204. Warn if over 250 bubbles per interval.
17-03-17 22:52:45.558 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:52:45.588 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:52:46.008 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:52:46.038 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:52:46.458 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:52:46.488 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:52:46.908 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:52:46.938 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:52:47.018 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 11 R1 8
17-03-17 22:52:47.018 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 68. Bubbles during last 5000 ms interval: R1=8, R2=11, Total=19. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1094, R2=1129, Total=2223. Warn if over 250 bubbles per interval.
17-03-17 22:52:47.158 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 69, FrontChillerTemperature: 3.981281,
17-03-17 22:52:47.358 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:52:47.388 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:52:47.388 -07 000000610 INF: LanePump: Waited 7959 ms for pump motion to complete
17-03-17 22:52:47.388 -07 000000610 INF: =================== Cycle #69, Pumping Reagent PR2 (3) ===================
17-03-17 22:52:47.518 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:52:47.548 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 22:52:47.548 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 22:52:47.678 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:52:47.708 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 22:52:47.708 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 22:52:47.708 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 22:52:47.838 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 22:52:47.868 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:52:48.298 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:52:48.328 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:52:48.328 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 22:52:48.328 -07 000000610 INF: =================== Cycle #69 ===================
17-03-17 22:52:49.548 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 22:52:49.548 -07 000000610 INF: ReagentValve: Go to position 1 - PumpToFlowcell start
17-03-17 22:52:49.548 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 22:52:49.568 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 22:52:49.568 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 1. Moving 2 positions.
17-03-17 22:52:49.568 -07 000000610 INF: ReagentValve: Xmit -01\r
17-03-17 22:52:49.778 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 22:52:49.798 -07 000000610 INF: ReagentValve: Recv 0198\r
17-03-17 22:52:49.798 -07 000000610 INF: ReagentValve: Move- from 3 to 1 took 408 steps, expected 408. Error = 0 steps (0.0%)
17-03-17 22:52:49.848 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 22:52:49.868 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-17 22:52:49.868 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 22:52:49.968 -07 000000610 INF: =================== Cycle #69, Pumping Reagent IMT (1) ===================
17-03-17 22:52:49.968 -07 000000610 INF: LanePump: Pumping from 1, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 22:52:49.968 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:52:49.998 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 22:52:49.998 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 22:52:49.998 -07 000000610 INF: =================== Cycle #69, Pumping Reagent IMT (1), Aspirating port InputPort ===================
17-03-17 22:52:50.128 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 22:52:50.168 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:52:51.608 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:52:51.638 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:52:52.018 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 2 R1 1
17-03-17 22:52:52.018 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 68. Bubbles during last 5000 ms interval: R1=1, R2=2, Total=3. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1095, R2=1131, Total=2226. Warn if over 250 bubbles per interval.
17-03-17 22:52:52.058 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:52:52.088 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:52:52.088 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-17 22:52:52.088 -07 000000610 INF: =================== Cycle #69, Pumping Reagent IMT (1) ===================
17-03-17 22:52:52.218 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:52:52.248 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 22:52:52.248 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 22:52:52.378 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:52:52.408 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 22:52:52.408 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 22:52:52.408 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 22:52:52.518 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 69, FrontChillerTemperature: 4.009895,
17-03-17 22:52:52.538 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 22:52:52.568 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:52:52.998 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:52:53.028 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:52:53.028 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 22:52:53.028 -07 000000610 INF: =================== Cycle #69 ===================
17-03-17 22:52:54.248 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 22:52:54.248 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 22:52:54.248 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 22:52:54.268 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-17 22:52:54.268 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 1 to 3. Moving 2 positions.
17-03-17 22:52:54.268 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 22:52:54.498 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 22:52:54.518 -07 000000610 INF: ReagentValve: Recv 01AC\r
17-03-17 22:52:54.518 -07 000000610 INF: ReagentValve: Move+ from 1 to 3 took 428 steps, expected 408. Error = 20 steps (4.9%)
17-03-17 22:52:54.568 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 22:52:54.588 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 22:52:54.588 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 22:52:54.688 -07 000000610 INF: =================== Cycle #69, Pumping Reagent PR2 (3) ===================
17-03-17 22:52:54.688 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 22:52:54.688 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:52:54.718 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 22:52:54.718 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 22:52:54.718 -07 000000610 INF: =================== Cycle #69, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 22:52:54.848 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 22:52:54.888 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:52:55.758 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:52:55.788 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:52:55.788 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-17 22:52:55.788 -07 000000610 INF: =================== Cycle #69, Pumping Reagent PR2 (3) ===================
17-03-17 22:52:55.918 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:52:55.948 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 22:52:55.948 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 22:52:56.078 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:52:56.108 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 22:52:56.108 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 22:52:56.108 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 22:52:56.238 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 22:52:56.268 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:52:56.698 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:52:56.728 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:52:56.728 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 22:52:56.728 -07 000000610 INF: =================== Cycle #69 ===================
17-03-17 22:52:56.728 -07 000000610 INF: =================== Cycle #69, Flow Cell Temp 65° ===================
17-03-17 22:52:56.728 -07 000000610 INF: =================== Cycle #69, Flow Cell Temp 65°, FC temperature to 65° ===================
17-03-17 22:52:56.728 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 65000000\n [FlowCellTempControl]
17-03-17 22:52:56.728 -07 000000409 INF: FPGA: Recv TEC2TEMP 
17-03-17 22:52:56.738 -07 000000610 INF: FPGA: 'TEC2TEMP 0 65000000' command took 1 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:52:56.738 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 22:52:56.738 -07 000000541 INF: FPGA: Recv TEC2EN 
17-03-17 22:52:56.748 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:52:56.748 -07 000000610 INF: =================== Cycle #69, Flow Cell Temp 65° ===================
17-03-17 22:52:56.748 -07 000000610 INF: =================== Cycle #69 ===================
17-03-17 22:52:56.748 -07 000000610 INF: WaitCommand(30000) start
17-03-17 22:52:57.018 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:52:57.018 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 68. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1095, R2=1131, Total=2226. Warn if over 250 bubbles per interval.
17-03-17 22:52:57.878 -07 000000482 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 69, FrontChillerTemperature: 3.978563,
17-03-17 22:53:02.018 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:53:02.018 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 68. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1095, R2=1131, Total=2226. Warn if over 250 bubbles per interval.
17-03-17 22:53:03.238 -07 000000429 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 69, FrontChillerTemperature: 3.990831,
17-03-17 22:53:07.018 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:53:07.018 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 68. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1095, R2=1131, Total=2226. Warn if over 250 bubbles per interval.
17-03-17 22:53:08.598 -07 000000623 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 69, FrontChillerTemperature: 4.009895,
17-03-17 22:53:12.018 -07 000000551 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:53:12.018 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 68. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1095, R2=1131, Total=2226. Warn if over 250 bubbles per interval.
17-03-17 22:53:13.958 -07 000000478 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 69, FrontChillerTemperature: 4.000345,
17-03-17 22:53:17.018 -07 000000593 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:53:17.018 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 68. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1095, R2=1131, Total=2226. Warn if over 250 bubbles per interval.
17-03-17 22:53:19.318 -07 000000478 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 69, FrontChillerTemperature: 3.978563,
17-03-17 22:53:22.018 -07 000000429 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:53:22.018 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 68. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1095, R2=1131, Total=2226. Warn if over 250 bubbles per interval.
17-03-17 22:53:24.678 -07 000000593 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 69, FrontChillerTemperature: 3.98264,
17-03-17 22:53:26.758 -07 000000610 INF: WaitCommand(30000) end
17-03-17 22:53:26.758 -07 000000610 INF: =================== Cycle #69, Pumping Reagent PR2 (3) ===================
17-03-17 22:53:26.758 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 5 µL, calling command Pumping to Flow Cell #1
17-03-17 22:53:26.858 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:53:26.888 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 22:53:26.888 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 22:53:26.888 -07 000000610 INF: =================== Cycle #69, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 22:53:27.018 -07 000000610 INF: LanePump: Xmit /1V400IP30R\r
17-03-17 22:53:27.018 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:53:27.018 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 68. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1095, R2=1131, Total=2226. Warn if over 250 bubbles per interval.
17-03-17 22:53:27.058 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:53:27.598 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:53:27.628 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:53:27.628 -07 000000610 INF: LanePump: Waited 569 ms for pump motion to complete
17-03-17 22:53:27.628 -07 000000610 INF: =================== Cycle #69, Pumping Reagent PR2 (3) ===================
17-03-17 22:53:27.758 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:53:27.788 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 22:53:27.788 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-17 22:53:27.918 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:53:27.948 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 22:53:27.948 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-17 22:53:27.948 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 22:53:28.078 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 22:53:28.108 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:53:28.538 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:53:28.568 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:53:28.568 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 22:53:28.568 -07 000000610 INF: =================== Cycle #69 ===================
17-03-17 22:53:28.568 -07 000000448 INF: WaitCommand(30000) start
17-03-17 22:53:28.568 -07 000000501 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 22:53:28.568 -07 000000501 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 22:53:29.788 -07 000000501 INF: AsyncDelayTimer waited 1216ms
17-03-17 22:53:29.788 -07 000000501 INF: LanePump: Xmit /1?\r
17-03-17 22:53:29.818 -07 000000501 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 22:53:29.818 -07 000000501 INF: LanePump: Current Position of Pump is: 1920
17-03-17 22:53:29.948 -07 000000501 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 22:53:29.988 -07 000000501 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:53:30.038 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 69, FrontChillerTemperature: 3.958108,
17-03-17 22:53:32.018 -07 000000409 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:53:32.018 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 68. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1095, R2=1131, Total=2226. Warn if over 250 bubbles per interval.
17-03-17 22:53:32.328 -07 000000501 INF: LanePump: Xmit /1Q\r
17-03-17 22:53:32.358 -07 000000501 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:53:32.778 -07 000000501 INF: LanePump: Xmit /1Q\r
17-03-17 22:53:32.808 -07 000000501 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:53:32.808 -07 000000501 INF: LanePump: Waited 2819 ms for pump motion to complete
17-03-17 22:53:32.808 -07 000000501 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 22:53:32.808 -07 000000501 INF: ===================  ===================
17-03-17 22:53:35.398 -07 000000541 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 69, FrontChillerTemperature: 3.988112,
17-03-17 22:53:37.018 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:53:37.018 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 68. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1095, R2=1131, Total=2226. Warn if over 250 bubbles per interval.
17-03-17 22:53:40.758 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 69, FrontChillerTemperature: 3.986717,
17-03-17 22:53:42.018 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:53:42.018 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 68. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1095, R2=1131, Total=2226. Warn if over 250 bubbles per interval.
17-03-17 22:53:46.118 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 69, FrontChillerTemperature: 3.996267,
17-03-17 22:53:47.018 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:53:47.018 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 68. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1095, R2=1131, Total=2226. Warn if over 250 bubbles per interval.
17-03-17 22:53:51.478 -07 000000551 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 69, FrontChillerTemperature: 4.003063,
17-03-17 22:53:52.018 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:53:52.018 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 68. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1095, R2=1131, Total=2226. Warn if over 250 bubbles per interval.
17-03-17 22:53:56.838 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 69, FrontChillerTemperature: 4.000345,
17-03-17 22:53:57.018 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:53:57.018 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 68. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1095, R2=1131, Total=2226. Warn if over 250 bubbles per interval.
17-03-17 22:53:58.578 -07 000000448 INF: WaitCommand(30000) end
17-03-17 22:53:58.578 -07 000000610 INF: =================== Cycle #69, Flow Cell Temp 22° ===================
17-03-17 22:53:58.578 -07 000000610 INF: =================== Cycle #69, Flow Cell Temp 22°, FC temperature to 22° ===================
17-03-17 22:53:58.578 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 22000000\n [FlowCellTempControl]
17-03-17 22:53:58.578 -07 000000478 INF: FPGA: Recv TEC2TEMP 
17-03-17 22:53:58.588 -07 000000610 INF: FPGA: 'TEC2TEMP 0 22000000' command took 1 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 22:53:58.588 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 22:53:58.588 -07 000000415 INF: FPGA: Recv TEC2EN 
17-03-17 22:53:58.598 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:53:58.598 -07 000000610 INF: =================== Cycle #69, Flow Cell Temp 22° ===================
17-03-17 22:53:58.598 -07 000000610 INF: =================== Cycle #69 ===================
17-03-17 22:53:58.598 -07 000000610 INF: =================== Cycle #69, Pumping Reagent PR2 (3) ===================
17-03-17 22:53:58.598 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-17 22:53:58.598 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:53:58.638 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 22:53:58.638 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 22:53:58.638 -07 000000610 INF: =================== Cycle #69, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 22:53:58.768 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-17 22:53:58.808 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:54:01.938 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:54:01.968 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:54:02.018 -07 000000541 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:54:02.018 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 68. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1095, R2=1131, Total=2226. Warn if over 250 bubbles per interval.
17-03-17 22:54:02.198 -07 000000409 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 69, FrontChillerTemperature: 3.996267,
17-03-17 22:54:02.388 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:54:02.418 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:54:02.838 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:54:02.868 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:54:02.868 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-17 22:54:02.868 -07 000000610 INF: =================== Cycle #69, Pumping Reagent PR2 (3) ===================
17-03-17 22:54:02.998 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:54:03.028 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 22:54:03.028 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 22:54:03.158 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:54:03.188 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 22:54:03.188 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 22:54:03.188 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 22:54:03.318 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 22:54:03.348 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:54:03.778 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:54:03.808 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:54:03.808 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 22:54:03.808 -07 000000610 INF: =================== Cycle #69 ===================
17-03-17 22:54:05.028 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 22:54:05.028 -07 000000610 INF: ReagentValve: Go to position 2 - PumpToFlowcell start
17-03-17 22:54:05.028 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 22:54:05.048 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 22:54:05.048 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 2. Moving 1 positions.
17-03-17 22:54:05.048 -07 000000610 INF: ReagentValve: Xmit -02\r
17-03-17 22:54:05.198 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 22:54:05.218 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-17 22:54:05.218 -07 000000610 INF: ReagentValve: Move- from 3 to 2 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-17 22:54:05.268 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 22:54:05.288 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-17 22:54:05.288 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 22:54:05.388 -07 000000610 INF: =================== Cycle #69, Pumping Reagent USM (2) ===================
17-03-17 22:54:05.388 -07 000000610 INF: LanePump: Pumping from 2, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 22:54:05.388 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:54:05.418 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 22:54:05.418 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 22:54:05.418 -07 000000610 INF: =================== Cycle #69, Pumping Reagent USM (2), Aspirating port InputPort ===================
17-03-17 22:54:05.548 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 22:54:05.588 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:54:07.018 -07 000000486 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:54:07.018 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 68. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1095, R2=1131, Total=2226. Warn if over 250 bubbles per interval.
17-03-17 22:54:07.028 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:54:07.058 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:54:07.478 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:54:07.508 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:54:07.508 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-17 22:54:07.508 -07 000000610 INF: =================== Cycle #69, Pumping Reagent USM (2) ===================
17-03-17 22:54:07.558 -07 000000547 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 69, FrontChillerTemperature: 4.012614,
17-03-17 22:54:07.638 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:54:07.668 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 22:54:07.668 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 22:54:07.798 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:54:07.828 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 22:54:07.828 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 22:54:07.828 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 22:54:07.958 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 22:54:07.988 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:54:08.418 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:54:08.448 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:54:08.448 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 22:54:08.448 -07 000000610 INF: =================== Cycle #69 ===================
17-03-17 22:54:09.668 -07 000000610 INF: AsyncDelayTimer waited 1217ms
17-03-17 22:54:09.668 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 22:54:09.668 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 22:54:09.688 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-17 22:54:09.688 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 2 to 3. Moving 1 positions.
17-03-17 22:54:09.688 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 22:54:09.838 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 22:54:09.858 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-17 22:54:09.858 -07 000000610 INF: ReagentValve: Move+ from 2 to 3 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-17 22:54:09.908 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 22:54:09.928 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 22:54:09.928 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 22:54:10.028 -07 000000610 INF: =================== Cycle #69, Pumping Reagent PR2 (3) ===================
17-03-17 22:54:10.028 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 22:54:10.028 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:54:10.058 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 22:54:10.058 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 22:54:10.058 -07 000000610 INF: =================== Cycle #69, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 22:54:10.188 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 22:54:10.228 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:54:11.098 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:54:11.128 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:54:11.128 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-17 22:54:11.128 -07 000000610 INF: =================== Cycle #69, Pumping Reagent PR2 (3) ===================
17-03-17 22:54:11.258 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:54:11.288 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 22:54:11.288 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 22:54:11.418 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:54:11.448 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 22:54:11.448 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 22:54:11.448 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 22:54:11.578 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 22:54:11.608 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:54:12.018 -07 000000623 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:54:12.018 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 68. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1095, R2=1131, Total=2226. Warn if over 250 bubbles per interval.
17-03-17 22:54:12.038 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:54:12.068 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:54:12.068 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 22:54:12.068 -07 000000610 INF: =================== Cycle #69 ===================
17-03-17 22:54:12.068 -07 000000462 INF: WaitCommand(10000) start
17-03-17 22:54:12.068 -07 000000429 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 22:54:12.068 -07 000000429 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 22:54:12.918 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 69, FrontChillerTemperature: 4.009895,
17-03-17 22:54:13.288 -07 000000429 INF: AsyncDelayTimer waited 1215ms
17-03-17 22:54:13.288 -07 000000429 INF: LanePump: Xmit /1?\r
17-03-17 22:54:13.318 -07 000000429 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 22:54:13.318 -07 000000429 INF: LanePump: Current Position of Pump is: 1110
17-03-17 22:54:13.448 -07 000000429 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 22:54:13.488 -07 000000429 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:54:15.018 -07 000000429 INF: LanePump: Xmit /1Q\r
17-03-17 22:54:15.048 -07 000000429 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:54:15.468 -07 000000429 INF: LanePump: Xmit /1Q\r
17-03-17 22:54:15.498 -07 000000429 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:54:15.498 -07 000000429 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-17 22:54:15.498 -07 000000429 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 22:54:15.498 -07 000000429 INF: ===================  ===================
17-03-17 22:54:17.018 -07 000000547 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:54:17.018 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 68. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1095, R2=1131, Total=2226. Warn if over 250 bubbles per interval.
17-03-17 22:54:18.278 -07 000000475 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 69, FrontChillerTemperature: 4.011254,
17-03-17 22:54:22.018 -07 000000486 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:54:22.018 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 68. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1095, R2=1131, Total=2226. Warn if over 250 bubbles per interval.
17-03-17 22:54:22.078 -07 000000462 INF: WaitCommand(10000) end
17-03-17 22:54:22.078 -07 000000610 INF: =================== Cycle #69, Imaging ===================
17-03-17 22:54:22.078 -07 000000610 INF: Imaging Cycle 69: ScanTilesCommand Cycle 69 time start.
17-03-17 22:54:22.078 -07 000000610 INF: ReagentValve: Go to position 24 (Plug) - Start of ScanTilesCommand
17-03-17 22:54:22.078 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 22:54:22.108 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 22:54:22.108 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 24. Moving 3 positions.
17-03-17 22:54:22.108 -07 000000610 INF: ReagentValve: Xmit -18\r
17-03-17 22:54:22.408 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 22:54:22.428 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-17 22:54:22.428 -07 000000610 INF: ReagentValve: Move- from 3 to 24 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-17 22:54:22.478 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 22:54:22.498 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-17 22:54:22.498 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:54:22.498 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:54:22.498 -07 000000415 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms start.
17-03-17 22:54:22.498 -07 000000415 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:54:22.498 -07 000000415 INF: FPGA: Xmit EXLED1ON\n [RedLED]
17-03-17 22:54:22.498 -07 000000486 INF: FPGA: Recv EXLED1ON 
17-03-17 22:54:22.508 -07 000000415 INF: FPGA: 'EXLED1ON' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:54:22.508 -07 000000415 INF: FPGA: Xmit EXLED1ADCR\n [RedLED]
17-03-17 22:54:22.508 -07 000000382 INF: FPGA: Recv EXLED1ADCR 23205
17-03-17 22:54:22.518 -07 000000415 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:22.518 -07 000000415 INF: RedLED: Using Red data: Photodiode ADC 23205 --> 7.5 mW (old method), or 205.6 mW (new method). Difference = 198.2 mW
17-03-17 22:54:22.518 -07 000000415 INF: FPGA: Xmit EXLED1OFF\n [RedLED]
17-03-17 22:54:22.518 -07 000000627 INF: FPGA: Recv EXLED1OFF 
17-03-17 22:54:22.528 -07 000000415 INF: FPGA: 'EXLED1OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:22.528 -07 000000415 INF: RedLED: LED was on for 20 ms
17-03-17 22:54:22.528 -07 000000415 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms end. Duration was 25 ms.
17-03-17 22:54:22.528 -07 000000415 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms start.
17-03-17 22:54:22.528 -07 000000415 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:54:22.528 -07 000000415 INF: FPGA: Xmit EXLED2ON\n [GreenLED]
17-03-17 22:54:22.528 -07 000000486 INF: FPGA: Recv EXLED2ON 
17-03-17 22:54:22.538 -07 000000415 INF: FPGA: 'EXLED2ON' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:54:22.538 -07 000000415 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-17 22:54:22.538 -07 000000475 INF: FPGA: Recv EXLED1ADCR 2099
17-03-17 22:54:22.548 -07 000000415 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:22.548 -07 000000415 INF: GreenLED: Using Green data: Photodiode ADC 2099 --> 0.9 mW (old method), or 182.4 mW (new method). Difference = 181.5 mW
17-03-17 22:54:22.548 -07 000000415 INF: FPGA: Xmit EXLED2OFF\n [GreenLED]
17-03-17 22:54:22.548 -07 000000482 INF: FPGA: Recv EXLED2OFF 
17-03-17 22:54:22.558 -07 000000415 INF: FPGA: 'EXLED2OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:22.558 -07 000000415 INF: GreenLED: LED was on for 19 ms
17-03-17 22:54:22.558 -07 000000415 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms end. Duration was 27 ms.
17-03-17 22:54:22.558 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-17 22:54:22.558 -07 000000475 INF: FPGA: Recv EMCUR 
17-03-17 22:54:22.568 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:54:22.568 -07 000000610 INF: FPGA: Xmit EMOUT 20 70\n [Compensator]
17-03-17 22:54:23.068 -07 000000502 INF: FPGA: Recv EMOUT
17-03-17 22:54:23.068 -07 000000610 INF: FPGA: 'EMOUT 20 70' command took 0 ms to send, 493 ms to get response, and 502 ms overall
17-03-17 22:54:23.068 -07 000000610 INF: FPGA: Xmit EMCUR 75\n [Compensator]
17-03-17 22:54:23.068 -07 000000623 INF: FPGA: Recv EMCUR 
17-03-17 22:54:23.078 -07 000000610 INF: FPGA: 'EMCUR 75' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:54:23.078 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 22:54:23.078 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 75.3798828125, Z-Position -0.127460651700632. ------
17-03-17 22:54:23.078 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:54:23.078 -07 000000486 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.17944 mm
17-03-17 22:54:23.078 -07 000000486 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:54:23.088 -07 000000502 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-17 22:54:23.088 -07 000000502 INF: Y Motor: Moving to 59.9126 mm, started at 75.3799 mm, delta = -15.4673 mm
17-03-17 22:54:23.088 -07 000000593 INF: Z Motor: Entering MoveAbsStepped (DAC = 39198, sync = True, waitForSettling = False)
17-03-17 22:54:23.088 -07 000000593 INF: Z Motor: Moving to -0.179437 mm, started at -0.127461 mm, distance = -51.98 um
17-03-17 22:54:23.088 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:54:23.088 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 4 ms overall
17-03-17 22:54:23.088 -07 000000593 INF: FPGA: Xmit ZDACW 39198\n [Z Motor]
17-03-17 22:54:23.088 -07 000000478 INF: FPGA: Recv ZDACW
17-03-17 22:54:23.098 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:54:23.098 -07 000000593 INF: FPGA: 'ZDACW 39198' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:54:23.098 -07 000000448 INF: FPGA: Recv YRDPOS 154378
17-03-17 22:54:23.108 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-17 22:54:23.108 -07 000000502 INF: Y Motor: Encoder = 154378 = motor step 120607.8 = 75.3799 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:54:23.108 -07 000000502 INF: Y Motor: Last commanded position = 75.3806 mm (120608.9 steps), delta from last commanded position = -15.4680 mm (-24748.8 steps). UsingTableMove = False
17-03-17 22:54:23.108 -07 000000502 INF: Y Motor: Moving to 122701 encoder counts
17-03-17 22:54:23.108 -07 000000462 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:54:23.118 -07 000000593 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:54:23.118 -07 000000382 INF: FPGA: Recv ZDACR 39198
17-03-17 22:54:23.128 -07 000000593 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:54:23.128 -07 000000593 INF: Z Motor: MoveAbsStepped took 38 ms (did NOT wait for settling yet))
17-03-17 22:54:23.128 -07 000000502 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-17 22:54:23.308 -07 000000593 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:54:23.308 -07 000000462 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 193 ms to get response, and 221 ms overall
17-03-17 22:54:23.638 -07 000000623 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 69, FrontChillerTemperature: 3.993549,
17-03-17 22:54:24.808 -07 000000593 INF: FPGA: Recv YMVTO 122703 24774
17-03-17 22:54:24.808 -07 000000502 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1676 ms to get response, and 1705 ms overall
17-03-17 22:54:24.808 -07 000000502 INF: Y Motor: Position error before settling = 2 encoder counts (0.001 mm)
17-03-17 22:54:24.808 -07 000000502 INF: Y Motor: To move from 75.380 to 59.913 (-15.467 mm) should take 24748 steps, but required 24774 steps (15.484 mm). Slippage = 0.016 mm (0.00%).
17-03-17 22:54:24.808 -07 000000502 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1705 ms, distance = 15.467 mm, average velocity = 9.072 mm/sec
17-03-17 22:54:27.018 -07 000000475 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:54:27.018 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 68. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1095, R2=1131, Total=2226. Warn if over 250 bubbles per interval.
17-03-17 22:54:27.658 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:54:27.658 -07 000000429 INF: FPGA: Recv YRDPOS 122697
17-03-17 22:54:27.668 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:54:27.668 -07 000000502 INF: Y Motor: Encoder = 122697 = motor step 95857.0 = 59.9106 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:54:27.688 -07 000000502 INF: Y Motor: After move to 59.912609, error = -0.001965, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:54:27.688 -07 000000502 INF: Y Motor: Position error after settling = -4 encoder counts (-0.002 mm), Delta during settling = -6 counts (-0.003 mm)
17-03-17 22:54:27.688 -07 000000502 INF: Y Motor: Moved to 59.9106 after 4605 ms
17-03-17 22:54:27.698 -07 000000486 INF: Z Motor: EndOfMoveAbsStepped: target = -0.179437 mm (DAC = 39198)
17-03-17 22:54:27.698 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:54:27.698 -07 000000618 INF: FPGA: Recv ZSGSRD 37226
17-03-17 22:54:27.708 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:54:27.708 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:54:27.708 -07 000000623 INF: FPGA: Recv ZSGSRD 37225
17-03-17 22:54:27.718 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:27.718 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:54:27.718 -07 000000551 INF: FPGA: Recv ZSGSRD 37221
17-03-17 22:54:27.728 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:27.728 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:54:27.728 -07 000000541 INF: FPGA: Recv ZSGSRD 37216
17-03-17 22:54:27.738 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:27.738 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:54:27.738 -07 000000429 INF: FPGA: Recv ZSGSRD 37216
17-03-17 22:54:27.748 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:27.748 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:54:27.748 -07 000000409 INF: FPGA: Recv ZSGSRD 37225
17-03-17 22:54:27.758 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:27.758 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:54:27.758 -07 000000429 INF: FPGA: Recv ZSGSRD 37225
17-03-17 22:54:27.768 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:27.768 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:54:27.768 -07 000000501 INF: FPGA: Recv ZSGSRD 37222
17-03-17 22:54:27.778 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:27.778 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:54:27.778 -07 000000478 INF: FPGA: Recv ZSGSRD 37220
17-03-17 22:54:27.788 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:27.788 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:54:27.788 -07 000000576 INF: FPGA: Recv ZSGSRD 37227
17-03-17 22:54:27.798 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:27.798 -07 000000486 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:54:27.798 -07 000000547 INF: FPGA: Recv ZPIEZORD 33640
17-03-17 22:54:27.808 -07 000000486 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:27.808 -07 000000486 INF: Z Motor: Piezo is near 51.9 V (nominally 0 to 100 V), expect near 59.8 V, since DAC is at 5.981 V. Piezo Error = -7.9 V.
17-03-17 22:54:27.808 -07 000000486 INF: Z Motor: ReadAdcAverage: Commanded Z = -179.4 um, Read 10 ADC samples: Avg = 37222 (-178.5 uncal um), Error = 0.9 uncal um, Median = 37224 (-178.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 37216 (-178.5 uncal um), Max = 37227 (-178.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 22:54:27.808 -07 000000486 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37222, posNoise = 5, negNoise = 6
17-03-17 22:54:27.808 -07 000000486 INF: Z Motor: After move to -0.179437, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:54:27.808 -07 000000486 INF: Z Motor: Settle wait time = 4608 ms, measure time = 111 ms (allowed 150 ms), total time = 4719 ms
17-03-17 22:54:27.808 -07 000000486 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-17 22:54:27.848 -07 000000486 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4762 ms
17-03-17 22:54:27.848 -07 000000486 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:54:27.848 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:54:27.848 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:54:27.848 -07 000000415 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:54:27.848 -07 000000482 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:54:27.848 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:54:27.848 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:54:27.848 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:54:27.848 -07 000000576 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-17 22:54:27.878 -07 000000576 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 23 ms.
17-03-17 22:54:27.878 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:54:27.878 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-17 22:54:27.878 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:54:27.888 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 22:54:27.888 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 42 ms.
17-03-17 22:54:27.898 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:54:27.938 -07 000000409 INF: FPGA: Recv @CAMSNAP turning led on 41
17-03-17 22:54:28.138 -07 000000415 INF: FPGA: Recv @CAMSNAP img rdy 241
17-03-17 22:54:28.138 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 241
17-03-17 22:54:28.138 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:54:28.138 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 22:54:28.178 -07 000000627 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:54:28.178 -07 000000551 INF: FPGA: Recv CAMSNAP
17-03-17 22:54:28.178 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 285 ms overall
17-03-17 22:54:28.268 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 125 ms.
17-03-17 22:54:28.268 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:54:28.268 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:54:28.268 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-17 22:54:28.378 -07 000000541 INF: Image SNR check: start
17-03-17 22:54:28.378 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:54:28.378 -07 000000551 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:54:28.388 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 22:54:28.388 -07 000000501 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:54:28.388 -07 000000541 INF: Image SNR check: pass  [peak (Max-Min)=61.97]
17-03-17 22:54:28.388 -07 000000541 INF: Autofocus start
17-03-17 22:54:28.388 -07 000000541 INF: MeasureProfile start
17-03-17 22:54:28.398 -07 000000541 INF: MeasureProfile done
17-03-17 22:54:28.398 -07 000000541 INF: X=-16  Z correction [um]=-0.1496812
17-03-17 22:54:28.398 -07 000000541 INF: Autofocus finished
17-03-17 22:54:28.588 -07 000000547 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:54:28.588 -07 000000501 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:54:28.588 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.91064453125, Z-position -0.179445376351761. ----------
17-03-17 22:54:28.588 -07 000000610 INF: Cycle	69	Tile	1	Exposure Settings		A	463	G	223	T	223	C	463
17-03-17 22:54:28.598 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37678, sync = True, waitForSettling = True)
17-03-17 22:54:28.598 -07 000000610 INF: Z Motor: Moving to -0.172479 mm, started at -0.179445 mm, distance = 6.97 um
17-03-17 22:54:28.598 -07 000000610 INF: FPGA: Xmit ZDACW 37678\n [Z Motor]
17-03-17 22:54:28.598 -07 000000593 INF: FPGA: Recv ZDACW
17-03-17 22:54:28.608 -07 000000610 INF: FPGA: 'ZDACW 37678' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:54:28.608 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:54:28.608 -07 000000415 INF: FPGA: Recv ZDACR 37678
17-03-17 22:54:28.618 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:28.618 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:54:28.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:54:28.768 -07 000000501 INF: FPGA: Recv ZSGSRD 36137
17-03-17 22:54:28.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:54:28.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:54:28.778 -07 000000618 INF: FPGA: Recv ZSGSRD 36136
17-03-17 22:54:28.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:28.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:54:28.788 -07 000000486 INF: FPGA: Recv ZSGSRD 36143
17-03-17 22:54:28.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:28.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:54:28.798 -07 000000382 INF: FPGA: Recv ZSGSRD 36144
17-03-17 22:54:28.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:28.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:54:28.808 -07 000000462 INF: FPGA: Recv ZSGSRD 36137
17-03-17 22:54:28.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:28.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:54:28.818 -07 000000409 INF: FPGA: Recv ZSGSRD 36141
17-03-17 22:54:28.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:28.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:54:28.828 -07 000000478 INF: FPGA: Recv ZSGSRD 36142
17-03-17 22:54:28.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:28.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:54:28.838 -07 000000623 INF: FPGA: Recv ZSGSRD 36137
17-03-17 22:54:28.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:28.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:54:28.848 -07 000000576 INF: FPGA: Recv ZSGSRD 36138
17-03-17 22:54:28.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:28.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:54:28.858 -07 000000462 INF: FPGA: Recv ZSGSRD 36139
17-03-17 22:54:28.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:28.868 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:54:28.868 -07 000000409 INF: FPGA: Recv ZPIEZORD 32214
17-03-17 22:54:28.878 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:28.878 -07 000000610 INF: Z Motor: Piezo is near 48.8 V (nominally 0 to 100 V), expect near 57.5 V, since DAC is at 5.749 V. Piezo Error = -8.7 V.
17-03-17 22:54:28.878 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.5 um, Read 10 ADC samples: Avg = 36139 (-171.6 uncal um), Error = 0.9 uncal um, Median = 36138 (-171.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 36136 (-171.6 uncal um), Max = 36144 (-171.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 22:54:28.878 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36139, posNoise = 5, negNoise = 3
17-03-17 22:54:28.878 -07 000000610 INF: Z Motor: After move to -0.172479, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:54:28.878 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 22:54:28.878 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:54:28.878 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:54:28.878 -07 000000415 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:54:28.878 -07 000000482 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:54:28.878 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:54:28.878 -07 000000623 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:54:28.878 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:54:28.878 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:54:28.878 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:54:28.878 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:54:28.878 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:54:28.878 -07 000000462 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-17 22:54:28.888 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 22:54:28.888 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:54:28.898 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-17 22:54:28.898 -07 000000482 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 18 ms.
17-03-17 22:54:28.908 -07 000000462 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 21 ms.
17-03-17 22:54:28.908 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:54:28.908 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:54:28.908 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:54:28.918 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 12 ms.
17-03-17 22:54:28.918 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 39 ms.
17-03-17 22:54:28.918 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 463 463 223 223 37855 150\n [Camera]
17-03-17 22:54:28.998 -07 000000486 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 69, FrontChillerTemperature: 3.993549,
17-03-17 22:54:29.118 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:54:29.588 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 655
17-03-17 22:54:29.588 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 655
17-03-17 22:54:29.588 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:54:29.588 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 655
17-03-17 22:54:29.588 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 655
17-03-17 22:54:29.588 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:54:29.598 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:54:29.598 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-17 22:54:29.598 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:54:29.598 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 22:54:29.778 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37855 848
17-03-17 22:54:29.928 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning grn on 998
17-03-17 22:54:29.988 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 396 ms.
17-03-17 22:54:29.988 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 22:54:29.988 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:54:29.988 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 396 ms.
17-03-17 22:54:29.988 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 22:54:29.988 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:54:29.998 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:54:29.998 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-17 22:54:29.998 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 22:54:30.008 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-17 22:54:30.148 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1221
17-03-17 22:54:30.148 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1221
17-03-17 22:54:30.148 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:54:30.148 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:54:30.148 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 2334002848, 0x0, 391868352) start.
17-03-17 22:54:30.158 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1221
17-03-17 22:54:30.158 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1221
17-03-17 22:54:30.158 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:54:30.158 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:54:30.158 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 2369425112, 0x0, 418435064) start.
17-03-17 22:54:30.338 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP 1414
17-03-17 22:54:30.338 -07 000000482 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:54:30.338 -07 000000610 INF: FPGA: 'CAMDBLSNAP 463 463 223 223 37855 150' command took 2 ms to send, 1409 ms to get response, and 1421 ms overall
17-03-17 22:54:30.348 -07 000000610 INF: Skipping AutoFocus in Tile 2: adopting Best-Z from the cache: -0.172450
17-03-17 22:54:30.348 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.17245 mm
17-03-17 22:54:30.348 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:54:30.348 -07 000000501 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-17 22:54:30.348 -07 000000501 INF: Y Motor: Moving to 60.7426 mm, started at 59.9106 mm, delta = 0.8320 mm
17-03-17 22:54:30.348 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:54:30.348 -07 000000576 INF: Z Motor: Entering MoveAbsStepped (DAC = 37672, sync = True, waitForSettling = False)
17-03-17 22:54:30.348 -07 000000576 INF: Z Motor: Moving to -0.172451 mm, started at -0.172488 mm, distance = 0.04 um
17-03-17 22:54:30.348 -07 000000415 INF: FPGA: Recv YRDPOS 122697
17-03-17 22:54:30.358 -07 000000501 INF: FPGA: 'YRDPOS' command took 2 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 22:54:30.358 -07 000000501 INF: Y Motor: Encoder = 122697 = motor step 95857.0 = 59.9106 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:54:30.358 -07 000000501 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:54:30.358 -07 000000501 INF: Y Motor: Moving 1331 steps2
17-03-17 22:54:30.358 -07 000000501 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:54:30.368 -07 000000576 INF: FPGA: Xmit ZDACW 37672\n [Z Motor]
17-03-17 22:54:30.368 -07 000000618 INF: FPGA: Recv ZDACW
17-03-17 22:54:30.378 -07 000000576 INF: FPGA: 'ZDACW 37672' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-17 22:54:30.378 -07 000000576 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:54:30.378 -07 000000462 INF: FPGA: Recv ZDACR 37672
17-03-17 22:54:30.388 -07 000000576 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:30.388 -07 000000576 INF: Z Motor: MoveAbsStepped took 33 ms (did NOT wait for settling yet))
17-03-17 22:54:30.558 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 2334002848, 0x0, 391868352) end. Duration was 404 ms.
17-03-17 22:54:30.558 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 22:54:30.558 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:54:30.558 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 2369425112, 0x0, 418435064) end. Duration was 403 ms.
17-03-17 22:54:30.558 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-17 22:54:30.558 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:54:30.568 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-17 22:54:30.568 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 413 ms.
17-03-17 22:54:30.568 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-17 22:54:30.578 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 419 ms.
17-03-17 22:54:30.738 -07 000000486 INF: FPGA: Recv YMVTILE
17-03-17 22:54:30.738 -07 000000501 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 372 ms to get response, and 381 ms overall
17-03-17 22:54:30.768 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:54:30.768 -07 000000576 INF: FPGA: Recv YRDPOS 124381
17-03-17 22:54:30.778 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:54:30.778 -07 000000501 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:54:30.778 -07 000000501 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-17 22:54:30.778 -07 000000501 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 381 ms, distance = 0.832 mm, average velocity = 2.184 mm/sec
17-03-17 22:54:31.728 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:54:31.728 -07 000000593 INF: FPGA: Recv YRDPOS 124381
17-03-17 22:54:31.738 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:31.738 -07 000000501 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:54:31.758 -07 000000501 INF: Y Motor: After move to 60.742607, error = -0.009697, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:54:31.758 -07 000000501 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:54:31.758 -07 000000501 INF: Y Motor: Moved to 60.7329 after 1413 ms (table move)
17-03-17 22:54:31.758 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172451 mm (DAC = 37672)
17-03-17 22:54:31.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:54:31.768 -07 000000576 INF: FPGA: Recv ZSGSRD 36134
17-03-17 22:54:31.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:54:31.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:54:31.778 -07 000000475 INF: FPGA: Recv ZSGSRD 36130
17-03-17 22:54:31.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:31.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:54:31.788 -07 000000415 INF: FPGA: Recv ZSGSRD 36140
17-03-17 22:54:31.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:31.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:54:31.798 -07 000000409 INF: FPGA: Recv ZSGSRD 36141
17-03-17 22:54:31.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:31.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:54:31.808 -07 000000462 INF: FPGA: Recv ZSGSRD 36136
17-03-17 22:54:31.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:31.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:54:31.818 -07 000000382 INF: FPGA: Recv ZSGSRD 36135
17-03-17 22:54:31.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:31.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:54:31.828 -07 000000475 INF: FPGA: Recv ZSGSRD 36128
17-03-17 22:54:31.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:31.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:54:31.838 -07 000000478 INF: FPGA: Recv ZSGSRD 36137
17-03-17 22:54:31.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:31.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:54:31.848 -07 000000429 INF: FPGA: Recv ZSGSRD 36132
17-03-17 22:54:31.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:31.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:54:31.858 -07 000000627 INF: FPGA: Recv ZSGSRD 36139
17-03-17 22:54:31.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:31.868 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:54:31.868 -07 000000482 INF: FPGA: Recv ZPIEZORD 32201
17-03-17 22:54:31.878 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:31.878 -07 000000610 INF: Z Motor: Piezo is near 48.8 V (nominally 0 to 100 V), expect near 57.5 V, since DAC is at 5.748 V. Piezo Error = -8.7 V.
17-03-17 22:54:31.878 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.5 um, Read 10 ADC samples: Avg = 36135 (-171.6 uncal um), Error = 0.9 uncal um, Median = 36136 (-171.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36128 (-171.5 uncal um), Max = 36141 (-171.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 22:54:31.878 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36135, posNoise = 6, negNoise = 7
17-03-17 22:54:31.878 -07 000000610 INF: Z Motor: After move to -0.172451, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:54:31.878 -07 000000610 INF: Z Motor: Settle wait time = 1413 ms, measure time = 111 ms (allowed 150 ms), total time = 1524 ms
17-03-17 22:54:31.878 -07 000000610 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-17 22:54:31.918 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1568 ms
17-03-17 22:54:31.918 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:54:31.918 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.73291015625, Z-position -0.172462257753667. ----------
17-03-17 22:54:31.918 -07 000000610 INF: Cycle	69	Tile	2	Exposure Settings		A	463	G	223	T	223	C	463
17-03-17 22:54:31.918 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37495, sync = True, waitForSettling = True)
17-03-17 22:54:31.918 -07 000000610 INF: Z Motor: Moving to -0.171641 mm, started at -0.172462 mm, distance = 0.82 um
17-03-17 22:54:31.918 -07 000000610 INF: FPGA: Xmit ZDACW 37495\n [Z Motor]
17-03-17 22:54:31.918 -07 000000486 INF: FPGA: Recv ZDACW
17-03-17 22:54:31.928 -07 000000610 INF: FPGA: 'ZDACW 37495' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:54:31.928 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:54:31.928 -07 000000462 INF: FPGA: Recv ZDACR 37495
17-03-17 22:54:31.938 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:31.938 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:54:32.018 -07 000000623 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:54:32.018 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 68. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1095, R2=1131, Total=2226. Warn if over 250 bubbles per interval.
17-03-17 22:54:32.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:54:32.088 -07 000000547 INF: FPGA: Recv ZSGSRD 36008
17-03-17 22:54:32.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:54:32.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:54:32.098 -07 000000478 INF: FPGA: Recv ZSGSRD 36013
17-03-17 22:54:32.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:32.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:54:32.108 -07 000000448 INF: FPGA: Recv ZSGSRD 36015
17-03-17 22:54:32.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:32.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:54:32.118 -07 000000618 INF: FPGA: Recv ZSGSRD 36009
17-03-17 22:54:32.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:32.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:54:32.128 -07 000000576 INF: FPGA: Recv ZSGSRD 36009
17-03-17 22:54:32.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:32.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:54:32.138 -07 000000486 INF: FPGA: Recv ZSGSRD 36008
17-03-17 22:54:32.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:32.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:54:32.148 -07 000000415 INF: FPGA: Recv ZSGSRD 36010
17-03-17 22:54:32.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:32.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:54:32.158 -07 000000409 INF: FPGA: Recv ZSGSRD 36012
17-03-17 22:54:32.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 22:54:32.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:54:32.168 -07 000000551 INF: FPGA: Recv ZSGSRD 36007
17-03-17 22:54:32.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:32.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:54:32.178 -07 000000482 INF: FPGA: Recv ZSGSRD 36015
17-03-17 22:54:32.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:32.188 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:54:32.188 -07 000000429 INF: FPGA: Recv ZPIEZORD 32034
17-03-17 22:54:32.198 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:32.198 -07 000000610 INF: Z Motor: Piezo is near 48.4 V (nominally 0 to 100 V), expect near 57.2 V, since DAC is at 5.721 V. Piezo Error = -8.8 V.
17-03-17 22:54:32.198 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.6 um, Read 10 ADC samples: Avg = 36011 (-170.8 uncal um), Error = 0.9 uncal um, Median = 36010 (-170.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 36007 (-170.8 uncal um), Max = 36015 (-170.8 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 22:54:32.198 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36011, posNoise = 4, negNoise = 4
17-03-17 22:54:32.198 -07 000000610 INF: Z Motor: After move to -0.171641, error = -0.000025, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:54:32.198 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-17 22:54:32.198 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:54:32.198 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:54:32.198 -07 000000409 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:54:32.198 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:54:32.198 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:54:32.198 -07 000000541 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:54:32.198 -07 000000482 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:54:32.198 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:54:32.198 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:54:32.198 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:54:32.198 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 22:54:32.198 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:54:32.208 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:54:32.208 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:54:32.208 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:54:32.208 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:54:32.218 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 22:54:32.218 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 24 ms.
17-03-17 22:54:32.218 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 22:54:32.218 -07 000000482 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 22:54:32.228 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 463 463 223 223 37672 150\n [Camera]
17-03-17 22:54:32.428 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:54:32.888 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 655
17-03-17 22:54:32.888 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 655
17-03-17 22:54:32.888 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:54:32.888 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:54:32.888 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1094749800, 0x0, 391868352) start.
17-03-17 22:54:32.888 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 655
17-03-17 22:54:32.888 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 655
17-03-17 22:54:32.888 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:54:32.888 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:54:32.888 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) start.
17-03-17 22:54:33.078 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37672 848
17-03-17 22:54:33.228 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning grn on 998
17-03-17 22:54:33.288 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1094749800, 0x0, 391868352) end. Duration was 399 ms.
17-03-17 22:54:33.288 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 22:54:33.288 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:54:33.288 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) end. Duration was 400 ms.
17-03-17 22:54:33.288 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:54:33.288 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 22:54:33.288 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 22:54:33.288 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:54:33.298 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 22:54:33.308 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-17 22:54:33.458 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1221
17-03-17 22:54:33.458 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1221
17-03-17 22:54:33.458 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:54:33.458 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:54:33.458 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 1165594328, 0x0, 391868352) start.
17-03-17 22:54:33.458 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1221
17-03-17 22:54:33.458 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1221
17-03-17 22:54:33.458 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:54:33.578 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:54:33.578 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-17 22:54:33.648 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP 1414
17-03-17 22:54:33.648 -07 000000576 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:54:33.648 -07 000000610 INF: FPGA: 'CAMDBLSNAP 463 463 223 223 37672 150' command took 2 ms to send, 1411 ms to get response, and 1420 ms overall
17-03-17 22:54:33.648 -07 000000610 INF: Skipping AutoFocus in Tile 3: adopting Best-Z from the cache: -0.172206
17-03-17 22:54:33.648 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.17221 mm
17-03-17 22:54:33.648 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:54:33.648 -07 000000482 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-17 22:54:33.648 -07 000000482 INF: Y Motor: Moving to 61.5726 mm, started at 60.7329 mm, delta = 0.8397 mm
17-03-17 22:54:33.648 -07 000000502 INF: Z Motor: Entering MoveAbsStepped (DAC = 37618, sync = True, waitForSettling = False)
17-03-17 22:54:33.648 -07 000000502 INF: Z Motor: Moving to -0.172204 mm, started at -0.171666 mm, distance = -0.54 um
17-03-17 22:54:33.648 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:54:33.648 -07 000000593 INF: FPGA: Recv YRDPOS 124382
17-03-17 22:54:33.658 -07 000000502 INF: FPGA: Xmit ZDACW 37618\n [Z Motor]
17-03-17 22:54:33.658 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:54:33.658 -07 000000482 INF: Y Motor: Encoder = 124382 = motor step 97173.4 = 60.7334 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:54:33.658 -07 000000618 INF: FPGA: Recv ZDACW
17-03-17 22:54:33.658 -07 000000482 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:54:33.658 -07 000000482 INF: Y Motor: Moving 1343 steps-20
17-03-17 22:54:33.668 -07 000000482 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:54:33.668 -07 000000502 INF: FPGA: 'ZDACW 37618' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 22:54:33.678 -07 000000502 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:54:33.678 -07 000000541 INF: FPGA: Recv ZDACR 37618
17-03-17 22:54:33.688 -07 000000502 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:54:33.688 -07 000000502 INF: Z Motor: MoveAbsStepped took 33 ms (did NOT wait for settling yet))
17-03-17 22:54:33.858 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 1165594328, 0x0, 391868352) end. Duration was 400 ms.
17-03-17 22:54:33.858 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 22:54:33.858 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:54:33.858 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 22:54:33.858 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 22:54:33.978 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 396 ms.
17-03-17 22:54:33.978 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 22:54:33.978 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:54:33.978 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 22:54:33.988 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 527 ms.
17-03-17 22:54:34.048 -07 000000541 INF: FPGA: Recv YMVTILE
17-03-17 22:54:34.048 -07 000000482 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 372 ms to get response, and 386 ms overall
17-03-17 22:54:34.088 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:54:34.088 -07 000000623 INF: FPGA: Recv YRDPOS 126083
17-03-17 22:54:34.098 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:54:34.098 -07 000000482 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:54:34.098 -07 000000482 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-17 22:54:34.098 -07 000000482 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 386 ms, distance = 0.840 mm, average velocity = 2.175 mm/sec
17-03-17 22:54:34.358 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 69, FrontChillerTemperature: 3.975845,
17-03-17 22:54:35.048 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:54:35.048 -07 000000409 INF: FPGA: Recv YRDPOS 126083
17-03-17 22:54:35.058 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:35.058 -07 000000482 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:54:35.078 -07 000000482 INF: Y Motor: After move to 61.572609, error = -0.008644, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:54:35.078 -07 000000482 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:54:35.078 -07 000000482 INF: Y Motor: Moved to 61.5640 after 1429 ms (table move)
17-03-17 22:54:35.078 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172204 mm (DAC = 37618)
17-03-17 22:54:35.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:54:35.088 -07 000000429 INF: FPGA: Recv ZSGSRD 36103
17-03-17 22:54:35.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 22:54:35.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:54:35.088 -07 000000551 INF: FPGA: Recv ZSGSRD 36095
17-03-17 22:54:35.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:54:35.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:54:35.098 -07 000000415 INF: FPGA: Recv ZSGSRD 36098
17-03-17 22:54:35.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:35.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:54:35.108 -07 000000409 INF: FPGA: Recv ZSGSRD 36097
17-03-17 22:54:35.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:35.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:54:35.118 -07 000000478 INF: FPGA: Recv ZSGSRD 36098
17-03-17 22:54:35.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:35.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:54:35.128 -07 000000382 INF: FPGA: Recv ZSGSRD 36099
17-03-17 22:54:35.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:35.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:54:35.138 -07 000000551 INF: FPGA: Recv ZSGSRD 36100
17-03-17 22:54:35.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:35.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:54:35.148 -07 000000415 INF: FPGA: Recv ZSGSRD 36094
17-03-17 22:54:35.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:35.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:54:35.158 -07 000000576 INF: FPGA: Recv ZSGSRD 36094
17-03-17 22:54:35.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:35.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:54:35.168 -07 000000482 INF: FPGA: Recv ZSGSRD 36091
17-03-17 22:54:35.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:35.178 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:54:35.178 -07 000000627 INF: FPGA: Recv ZPIEZORD 32165
17-03-17 22:54:35.188 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:35.188 -07 000000610 INF: Z Motor: Piezo is near 48.7 V (nominally 0 to 100 V), expect near 57.4 V, since DAC is at 5.740 V. Piezo Error = -8.7 V.
17-03-17 22:54:35.188 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.2 um, Read 10 ADC samples: Avg = 36097 (-171.3 uncal um), Error = 0.9 uncal um, Median = 36098 (-171.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36091 (-171.3 uncal um), Max = 36103 (-171.4 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 22:54:35.188 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36097, posNoise = 6, negNoise = 6
17-03-17 22:54:35.188 -07 000000610 INF: Z Motor: After move to -0.172204, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:54:35.188 -07 000000610 INF: Z Motor: Settle wait time = 1431 ms, measure time = 103 ms (allowed 150 ms), total time = 1534 ms
17-03-17 22:54:35.188 -07 000000610 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 22:54:35.238 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1585 ms
17-03-17 22:54:35.238 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:54:35.238 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.56396484375, Z-position -0.17221813769228. ----------
17-03-17 22:54:35.238 -07 000000610 INF: Cycle	69	Tile	3	Exposure Settings		A	463	G	223	T	223	C	463
17-03-17 22:54:35.238 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37442, sync = True, waitForSettling = True)
17-03-17 22:54:35.238 -07 000000610 INF: Z Motor: Moving to -0.171398 mm, started at -0.172218 mm, distance = 0.82 um
17-03-17 22:54:35.238 -07 000000610 INF: FPGA: Xmit ZDACW 37442\n [Z Motor]
17-03-17 22:54:35.238 -07 000000551 INF: FPGA: Recv ZDACW
17-03-17 22:54:35.248 -07 000000610 INF: FPGA: 'ZDACW 37442' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 22:54:35.248 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:54:35.248 -07 000000462 INF: FPGA: Recv ZDACR 37442
17-03-17 22:54:35.258 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:35.258 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:54:35.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:54:35.408 -07 000000382 INF: FPGA: Recv ZSGSRD 35968
17-03-17 22:54:35.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:54:35.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:54:35.418 -07 000000623 INF: FPGA: Recv ZSGSRD 35976
17-03-17 22:54:35.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:35.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:54:35.428 -07 000000593 INF: FPGA: Recv ZSGSRD 35973
17-03-17 22:54:35.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:35.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:54:35.438 -07 000000448 INF: FPGA: Recv ZSGSRD 35969
17-03-17 22:54:35.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:35.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:54:35.448 -07 000000475 INF: FPGA: Recv ZSGSRD 35966
17-03-17 22:54:35.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:35.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:54:35.458 -07 000000409 INF: FPGA: Recv ZSGSRD 35977
17-03-17 22:54:35.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:35.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:54:35.468 -07 000000541 INF: FPGA: Recv ZSGSRD 35968
17-03-17 22:54:35.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:35.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:54:35.478 -07 000000429 INF: FPGA: Recv ZSGSRD 35967
17-03-17 22:54:35.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:35.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:54:35.488 -07 000000576 INF: FPGA: Recv ZSGSRD 35975
17-03-17 22:54:35.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:35.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:54:35.498 -07 000000618 INF: FPGA: Recv ZSGSRD 35972
17-03-17 22:54:35.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:35.508 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:54:35.508 -07 000000486 INF: FPGA: Recv ZPIEZORD 31988
17-03-17 22:54:35.518 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:35.518 -07 000000610 INF: Z Motor: Piezo is near 48.3 V (nominally 0 to 100 V), expect near 57.1 V, since DAC is at 5.713 V. Piezo Error = -8.8 V.
17-03-17 22:54:35.518 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.4 um, Read 10 ADC samples: Avg = 35971 (-170.5 uncal um), Error = 0.9 uncal um, Median = 35970 (-170.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35966 (-170.5 uncal um), Max = 35977 (-170.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 22:54:35.518 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35971, posNoise = 6, negNoise = 5
17-03-17 22:54:35.518 -07 000000610 INF: Z Motor: After move to -0.171398, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:54:35.518 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 22:54:35.518 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:54:35.518 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:54:35.518 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:54:35.518 -07 000000623 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:54:35.518 -07 000000482 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:54:35.518 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:54:35.518 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:54:35.518 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:54:35.518 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:54:35.518 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:54:35.518 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:54:35.518 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:54:35.528 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 22:54:35.528 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:54:35.528 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:54:35.528 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:54:35.538 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 22:54:35.538 -07 000000482 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 22:54:35.538 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 22:54:35.538 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 22:54:35.538 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 463 463 223 223 37618 150\n [Camera]
17-03-17 22:54:35.748 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning red on 195
17-03-17 22:54:36.208 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 655
17-03-17 22:54:36.208 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 655
17-03-17 22:54:36.208 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:54:36.208 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 655
17-03-17 22:54:36.208 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 655
17-03-17 22:54:36.208 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:54:36.218 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:54:36.218 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 22:54:36.218 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:54:36.218 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 22:54:36.398 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37618 848
17-03-17 22:54:36.548 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP turning grn on 998
17-03-17 22:54:36.588 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 22:54:36.588 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 22:54:36.588 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:54:36.588 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 22:54:36.588 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 22:54:36.588 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:54:36.598 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:54:36.598 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:54:36.598 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 22:54:36.608 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 22:54:36.768 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1221
17-03-17 22:54:36.768 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1221
17-03-17 22:54:36.768 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:54:36.778 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1221
17-03-17 22:54:36.778 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1221
17-03-17 22:54:36.778 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:54:36.898 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:54:36.898 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 1094749800, 0x0, 391868352) start.
17-03-17 22:54:36.898 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:54:36.898 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-17 22:54:36.958 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP 1414
17-03-17 22:54:36.968 -07 000000618 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:54:36.968 -07 000000610 INF: FPGA: 'CAMDBLSNAP 463 463 223 223 37618 150' command took 2 ms to send, 1410 ms to get response, and 1420 ms overall
17-03-17 22:54:36.968 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 22:54:36.968 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.56396484375, Z-Position -0.171408686962418. ------
17-03-17 22:54:36.968 -07 000000478 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:54:36.968 -07 000000486 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.17768 mm
17-03-17 22:54:36.968 -07 000000486 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:54:36.968 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:54:36.968 -07 000000409 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-17 22:54:36.968 -07 000000409 INF: Y Motor: Moving to 62.4026 mm, started at 61.5640 mm, delta = 0.8386 mm
17-03-17 22:54:36.968 -07 000000502 INF: Z Motor: Entering MoveAbsStepped (DAC = 38814, sync = True, waitForSettling = False)
17-03-17 22:54:36.968 -07 000000502 INF: Z Motor: Moving to -0.177679 mm, started at -0.171409 mm, distance = -6.27 um
17-03-17 22:54:36.978 -07 000000478 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 22:54:36.978 -07 000000502 INF: FPGA: Xmit ZDACW 38814\n [Z Motor]
17-03-17 22:54:36.978 -07 000000482 INF: FPGA: Recv ZDACW
17-03-17 22:54:36.988 -07 000000502 INF: FPGA: 'ZDACW 38814' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 22:54:36.988 -07 000000478 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:54:36.998 -07 000000409 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:54:36.998 -07 000000482 INF: FPGA: Recv YRDPOS 126083
17-03-17 22:54:37.008 -07 000000502 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:54:37.008 -07 000000409 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 31 ms overall
17-03-17 22:54:37.008 -07 000000409 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:54:37.008 -07 000000409 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:54:37.008 -07 000000409 INF: Y Motor: Moving 1342 steps-18
17-03-17 22:54:37.008 -07 000000382 INF: FPGA: Recv ZDACR 38814
17-03-17 22:54:37.018 -07 000000502 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:54:37.018 -07 000000502 INF: Z Motor: MoveAbsStepped took 41 ms (did NOT wait for settling yet))
17-03-17 22:54:37.018 -07 000000409 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:54:37.018 -07 000000482 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:54:37.018 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 68. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1095, R2=1131, Total=2226. Warn if over 250 bubbles per interval.
17-03-17 22:54:37.188 -07 000000593 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:54:37.188 -07 000000478 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 212 ms overall
17-03-17 22:54:37.268 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 370 ms.
17-03-17 22:54:37.268 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-17 22:54:37.268 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:54:37.268 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 1094749800, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 22:54:37.268 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 22:54:37.268 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:54:37.278 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:54:37.278 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:54:37.278 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 503 ms.
17-03-17 22:54:37.278 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 505 ms.
17-03-17 22:54:37.398 -07 000000382 INF: FPGA: Recv YMVTILE
17-03-17 22:54:37.398 -07 000000409 INF: FPGA: 'YMVTILE 1327' command took 3 ms to send, 371 ms to get response, and 390 ms overall
17-03-17 22:54:37.438 -07 000000409 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:54:37.448 -07 000000593 INF: FPGA: Recv YRDPOS 127786
17-03-17 22:54:37.448 -07 000000409 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:54:37.448 -07 000000409 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:54:37.448 -07 000000409 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-17 22:54:37.448 -07 000000409 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 391 ms, distance = 0.839 mm, average velocity = 2.145 mm/sec
17-03-17 22:54:38.398 -07 000000409 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:54:38.398 -07 000000478 INF: FPGA: Recv YRDPOS 127786
17-03-17 22:54:38.408 -07 000000409 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:38.408 -07 000000409 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:54:38.428 -07 000000409 INF: Y Motor: After move to 62.402607, error = -0.007099, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:54:38.428 -07 000000409 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:54:38.428 -07 000000409 INF: Y Motor: Moved to 62.3955 after 1456 ms (table move)
17-03-17 22:54:38.428 -07 000000486 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177679 mm (DAC = 38814)
17-03-17 22:54:38.428 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:54:38.438 -07 000000448 INF: FPGA: Recv ZSGSRD 36955
17-03-17 22:54:38.438 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 22:54:38.438 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:54:38.438 -07 000000475 INF: FPGA: Recv ZSGSRD 36951
17-03-17 22:54:38.448 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:54:38.448 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:54:38.448 -07 000000415 INF: FPGA: Recv ZSGSRD 36940
17-03-17 22:54:38.458 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:38.458 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:54:38.458 -07 000000482 INF: FPGA: Recv ZSGSRD 36948
17-03-17 22:54:38.468 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:38.468 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:54:38.468 -07 000000409 INF: FPGA: Recv ZSGSRD 36949
17-03-17 22:54:38.478 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:38.478 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:54:38.478 -07 000000576 INF: FPGA: Recv ZSGSRD 36956
17-03-17 22:54:38.488 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:38.488 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:54:38.488 -07 000000462 INF: FPGA: Recv ZSGSRD 36959
17-03-17 22:54:38.498 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:38.498 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:54:38.498 -07 000000415 INF: FPGA: Recv ZSGSRD 36945
17-03-17 22:54:38.508 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:38.508 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:54:38.508 -07 000000482 INF: FPGA: Recv ZSGSRD 36948
17-03-17 22:54:38.518 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:38.518 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:54:38.518 -07 000000551 INF: FPGA: Recv ZSGSRD 36950
17-03-17 22:54:38.528 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:38.528 -07 000000486 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:54:38.528 -07 000000618 INF: FPGA: Recv ZPIEZORD 33287
17-03-17 22:54:38.538 -07 000000486 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:38.538 -07 000000486 INF: Z Motor: Piezo is near 51.1 V (nominally 0 to 100 V), expect near 59.2 V, since DAC is at 5.923 V. Piezo Error = -8.1 V.
17-03-17 22:54:38.538 -07 000000486 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.7 um, Read 10 ADC samples: Avg = 36950 (-176.8 uncal um), Error = 0.9 uncal um, Median = 36950 (-176.8 uncal um), StdDev = 6 (0.0 uncal um), Range = 19 (0.1 uncal um), Min = 36940 (-176.7 uncal um), Max = 36959 (-176.9 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-17 22:54:38.538 -07 000000486 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36950, posNoise = 9, negNoise = 10
17-03-17 22:54:38.538 -07 000000486 INF: Z Motor: After move to -0.177679, error = -0.000019, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:54:38.538 -07 000000486 INF: Z Motor: Settle wait time = 1459 ms, measure time = 103 ms (allowed 150 ms), total time = 1562 ms
17-03-17 22:54:38.538 -07 000000486 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 22:54:38.588 -07 000000486 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1614 ms
17-03-17 22:54:38.588 -07 000000486 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:54:38.588 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:54:38.588 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:54:38.588 -07 000000541 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:54:38.588 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:54:38.588 -07 000000551 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:54:38.588 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:54:38.588 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:54:38.588 -07 000000551 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:54:38.588 -07 000000551 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:54:38.588 -07 000000551 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:54:38.608 -07 000000551 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 22:54:38.608 -07 000000551 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 22:54:38.608 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:54:38.658 -07 000000502 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:54:38.848 -07 000000541 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:54:38.848 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:54:38.858 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:54:38.858 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610341080, 0x0, 559484976) start.
17-03-17 22:54:38.888 -07 000000478 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:54:38.888 -07 000000415 INF: FPGA: Recv CAMSNAP
17-03-17 22:54:38.898 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 285 ms overall
17-03-17 22:54:38.978 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610341080, 0x0, 559484976) end. Duration was 125 ms.
17-03-17 22:54:38.978 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:54:38.978 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:54:38.978 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-17 22:54:38.998 -07 000000486 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:54:38.998 -07 000000547 INF: Autofocus start
17-03-17 22:54:38.998 -07 000000547 INF: MeasureProfile start
17-03-17 22:54:38.998 -07 000000475 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:54:39.008 -07 000000486 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:54:39.008 -07 000000486 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:54:39.008 -07 000000547 INF: MeasureProfile done
17-03-17 22:54:39.008 -07 000000547 INF: X=32  Z correction [um]=0.09220707
17-03-17 22:54:39.008 -07 000000547 INF: Autofocus finished
17-03-17 22:54:39.208 -07 000000551 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:54:39.208 -07 000000486 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-17 22:54:39.208 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.3955078125, Z-position -0.177697990649202. ----------
17-03-17 22:54:39.208 -07 000000610 INF: Cycle	69	Tile	4	Exposure Settings		A	463	G	223	T	223	C	463
17-03-17 22:54:39.218 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37347, sync = True, waitForSettling = True)
17-03-17 22:54:39.218 -07 000000610 INF: Z Motor: Moving to -0.170964 mm, started at -0.177698 mm, distance = 6.73 um
17-03-17 22:54:39.218 -07 000000610 INF: FPGA: Xmit ZDACW 37347\n [Z Motor]
17-03-17 22:54:39.218 -07 000000627 INF: FPGA: Recv ZDACW
17-03-17 22:54:39.228 -07 000000610 INF: FPGA: 'ZDACW 37347' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:54:39.228 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:54:39.228 -07 000000551 INF: FPGA: Recv ZDACR 37347
17-03-17 22:54:39.238 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:39.238 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:54:39.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:54:39.388 -07 000000623 INF: FPGA: Recv ZSGSRD 35907
17-03-17 22:54:39.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:54:39.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:54:39.408 -07 000000618 INF: FPGA: Recv ZSGSRD 35902
17-03-17 22:54:39.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:54:39.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:54:39.418 -07 000000429 INF: FPGA: Recv ZSGSRD 35906
17-03-17 22:54:39.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:39.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:54:39.428 -07 000000501 INF: FPGA: Recv ZSGSRD 35907
17-03-17 22:54:39.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:39.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:54:39.438 -07 000000576 INF: FPGA: Recv ZSGSRD 35902
17-03-17 22:54:39.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:39.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:54:39.448 -07 000000478 INF: FPGA: Recv ZSGSRD 35903
17-03-17 22:54:39.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:39.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:54:39.458 -07 000000502 INF: FPGA: Recv ZSGSRD 35898
17-03-17 22:54:39.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:39.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:54:39.468 -07 000000482 INF: FPGA: Recv ZSGSRD 35905
17-03-17 22:54:39.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:39.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:54:39.478 -07 000000547 INF: FPGA: Recv ZSGSRD 35902
17-03-17 22:54:39.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:39.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:54:39.488 -07 000000462 INF: FPGA: Recv ZSGSRD 35904
17-03-17 22:54:39.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:39.498 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:54:39.498 -07 000000551 INF: FPGA: Recv ZPIEZORD 31907
17-03-17 22:54:39.508 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:39.508 -07 000000610 INF: Z Motor: Piezo is near 48.2 V (nominally 0 to 100 V), expect near 57.0 V, since DAC is at 5.699 V. Piezo Error = -8.8 V.
17-03-17 22:54:39.508 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.0 um, Read 10 ADC samples: Avg = 35904 (-170.1 uncal um), Error = 0.9 uncal um, Median = 35904 (-170.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35898 (-170.1 uncal um), Max = 35907 (-170.1 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 22:54:39.508 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35904, posNoise = 3, negNoise = 6
17-03-17 22:54:39.508 -07 000000610 INF: Z Motor: After move to -0.170964, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:54:39.508 -07 000000610 INF: Z Motor: MoveAbsStepped took 289 ms)
17-03-17 22:54:39.508 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:54:39.508 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:54:39.508 -07 000000415 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:54:39.508 -07 000000541 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:54:39.508 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:54:39.508 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:54:39.508 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:54:39.508 -07 000000409 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:54:39.508 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:54:39.508 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:54:39.508 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 22:54:39.508 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:54:39.508 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:54:39.508 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:54:39.518 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:54:39.518 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:54:39.528 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 22:54:39.528 -07 000000541 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 22:54:39.528 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 22:54:39.528 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 22:54:39.528 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 463 463 223 223 37524 150\n [Camera]
17-03-17 22:54:39.718 -07 000000551 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 69, FrontChillerTemperature: 3.963579,
17-03-17 22:54:39.728 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:54:40.198 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 655
17-03-17 22:54:40.198 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 655
17-03-17 22:54:40.198 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:54:40.198 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 655
17-03-17 22:54:40.198 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 655
17-03-17 22:54:40.198 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:54:40.198 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:54:40.198 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 22:54:40.208 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:54:40.208 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 22:54:40.388 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37524 848
17-03-17 22:54:40.538 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1000
17-03-17 22:54:40.578 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 373 ms.
17-03-17 22:54:40.578 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-17 22:54:40.578 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:54:40.578 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 370 ms.
17-03-17 22:54:40.578 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-17 22:54:40.578 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:54:40.578 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 22:54:40.578 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 22:54:40.578 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 22:54:40.588 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 22:54:40.758 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1221
17-03-17 22:54:40.758 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1221
17-03-17 22:54:40.758 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:54:40.768 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1221
17-03-17 22:54:40.768 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1221
17-03-17 22:54:40.768 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:54:40.768 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 1130172064, 0x0, 391868352) start.
17-03-17 22:54:40.768 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:54:40.768 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:54:40.768 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 1165594328, 0x0, 418435064) start.
17-03-17 22:54:40.948 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP 1414
17-03-17 22:54:40.958 -07 000000541 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:54:40.958 -07 000000610 INF: FPGA: 'CAMDBLSNAP 463 463 223 223 37524 150' command took 2 ms to send, 1420 ms to get response, and 1423 ms overall
17-03-17 22:54:40.958 -07 000000610 INF: Skipping AutoFocus in Tile 5: adopting Best-Z from the cache: -0.171498
17-03-17 22:54:40.958 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.17150 mm
17-03-17 22:54:40.958 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:54:40.958 -07 000000502 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-17 22:54:40.958 -07 000000502 INF: Y Motor: Moving to 63.2326 mm, started at 62.3955 mm, delta = 0.8371 mm
17-03-17 22:54:40.958 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:54:40.958 -07 000000478 INF: Z Motor: Entering MoveAbsStepped (DAC = 37464, sync = True, waitForSettling = False)
17-03-17 22:54:40.958 -07 000000478 INF: Z Motor: Moving to -0.171499 mm, started at -0.170978 mm, distance = -0.52 um
17-03-17 22:54:40.958 -07 000000382 INF: FPGA: Recv YRDPOS 127787
17-03-17 22:54:40.968 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 22:54:40.968 -07 000000502 INF: Y Motor: Encoder = 127787 = motor step 99833.6 = 62.3960 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:54:40.968 -07 000000478 INF: FPGA: Xmit ZDACW 37464\n [Z Motor]
17-03-17 22:54:40.968 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 22:54:40.968 -07 000000502 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:54:40.968 -07 000000502 INF: Y Motor: Moving 1339 steps-15
17-03-17 22:54:40.978 -07 000000478 INF: FPGA: 'ZDACW 37464' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 22:54:40.978 -07 000000502 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:54:40.988 -07 000000478 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:54:40.988 -07 000000618 INF: FPGA: Recv ZDACR 37464
17-03-17 22:54:40.998 -07 000000478 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:54:40.998 -07 000000478 INF: Z Motor: MoveAbsStepped took 33 ms (did NOT wait for settling yet))
17-03-17 22:54:41.148 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 1165594328, 0x0, 418435064) end. Duration was 382 ms.
17-03-17 22:54:41.148 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-17 22:54:41.148 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:54:41.148 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 1130172064, 0x0, 391868352) end. Duration was 385 ms.
17-03-17 22:54:41.148 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 22:54:41.148 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:54:41.158 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:54:41.158 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:54:41.158 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 22:54:41.158 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 22:54:41.348 -07 000000462 INF: FPGA: Recv YMVTILE
17-03-17 22:54:41.348 -07 000000502 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 384 ms overall
17-03-17 22:54:41.398 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:54:41.398 -07 000000415 INF: FPGA: Recv YRDPOS 129483
17-03-17 22:54:41.408 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:54:41.408 -07 000000502 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:54:41.408 -07 000000502 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-17 22:54:41.408 -07 000000502 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 385 ms, distance = 0.837 mm, average velocity = 2.174 mm/sec
17-03-17 22:54:42.018 -07 000000593 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:54:42.018 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 68. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1095, R2=1131, Total=2226. Warn if over 250 bubbles per interval.
17-03-17 22:54:42.358 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:54:42.358 -07 000000627 INF: FPGA: Recv YRDPOS 129483
17-03-17 22:54:42.368 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:54:42.368 -07 000000502 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:54:42.388 -07 000000502 INF: Y Motor: After move to 63.232609, error = -0.008488, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:54:42.388 -07 000000502 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:54:42.388 -07 000000502 INF: Y Motor: Moved to 63.2241 after 1431 ms (table move)
17-03-17 22:54:42.388 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.171499 mm (DAC = 37464)
17-03-17 22:54:42.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:54:42.398 -07 000000551 INF: FPGA: Recv ZSGSRD 35986
17-03-17 22:54:42.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:54:42.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:54:42.408 -07 000000429 INF: FPGA: Recv ZSGSRD 35991
17-03-17 22:54:42.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:42.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:54:42.418 -07 000000409 INF: FPGA: Recv ZSGSRD 35993
17-03-17 22:54:42.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:42.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:54:42.428 -07 000000576 INF: FPGA: Recv ZSGSRD 35989
17-03-17 22:54:42.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:42.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:54:42.438 -07 000000502 INF: FPGA: Recv ZSGSRD 35981
17-03-17 22:54:42.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:42.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:54:42.448 -07 000000462 INF: FPGA: Recv ZSGSRD 35987
17-03-17 22:54:42.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:42.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:54:42.458 -07 000000541 INF: FPGA: Recv ZSGSRD 35983
17-03-17 22:54:42.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:42.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:54:42.468 -07 000000618 INF: FPGA: Recv ZSGSRD 35981
17-03-17 22:54:42.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:42.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:54:42.478 -07 000000576 INF: FPGA: Recv ZSGSRD 35987
17-03-17 22:54:42.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:42.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:54:42.488 -07 000000409 INF: FPGA: Recv ZSGSRD 35994
17-03-17 22:54:42.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:42.498 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:54:42.498 -07 000000478 INF: FPGA: Recv ZPIEZORD 32041
17-03-17 22:54:42.508 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:42.508 -07 000000610 INF: Z Motor: Piezo is near 48.4 V (nominally 0 to 100 V), expect near 57.2 V, since DAC is at 5.717 V. Piezo Error = -8.7 V.
17-03-17 22:54:42.508 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.5 um, Read 10 ADC samples: Avg = 35987 (-170.6 uncal um), Error = 0.9 uncal um, Median = 35987 (-170.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35981 (-170.6 uncal um), Max = 35994 (-170.7 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 22:54:42.508 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35987, posNoise = 7, negNoise = 6
17-03-17 22:54:42.508 -07 000000610 INF: Z Motor: After move to -0.171499, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:54:42.508 -07 000000610 INF: Z Motor: Settle wait time = 1433 ms, measure time = 110 ms (allowed 150 ms), total time = 1543 ms
17-03-17 22:54:42.508 -07 000000610 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-17 22:54:42.548 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1587 ms
17-03-17 22:54:42.548 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:54:42.548 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.22412109375, Z-position -0.171511474356687. ----------
17-03-17 22:54:42.548 -07 000000610 INF: Cycle	69	Tile	5	Exposure Settings		A	463	G	223	T	223	C	463
17-03-17 22:54:42.548 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37287, sync = True, waitForSettling = True)
17-03-17 22:54:42.548 -07 000000610 INF: Z Motor: Moving to -0.170689 mm, started at -0.171511 mm, distance = 0.82 um
17-03-17 22:54:42.548 -07 000000610 INF: FPGA: Xmit ZDACW 37287\n [Z Motor]
17-03-17 22:54:42.548 -07 000000429 INF: FPGA: Recv ZDACW
17-03-17 22:54:42.558 -07 000000610 INF: FPGA: 'ZDACW 37287' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:54:42.558 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:54:42.558 -07 000000547 INF: FPGA: Recv ZDACR 37287
17-03-17 22:54:42.568 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:42.568 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:54:42.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:54:42.718 -07 000000415 INF: FPGA: Recv ZSGSRD 35861
17-03-17 22:54:42.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:54:42.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:54:42.728 -07 000000486 INF: FPGA: Recv ZSGSRD 35867
17-03-17 22:54:42.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:42.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:54:42.738 -07 000000462 INF: FPGA: Recv ZSGSRD 35856
17-03-17 22:54:42.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:42.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:54:42.748 -07 000000486 INF: FPGA: Recv ZSGSRD 35867
17-03-17 22:54:42.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:42.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:54:42.758 -07 000000478 INF: FPGA: Recv ZSGSRD 35858
17-03-17 22:54:42.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:42.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:54:42.768 -07 000000429 INF: FPGA: Recv ZSGSRD 35858
17-03-17 22:54:42.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:42.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:54:42.778 -07 000000502 INF: FPGA: Recv ZSGSRD 35861
17-03-17 22:54:42.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:42.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:54:42.788 -07 000000627 INF: FPGA: Recv ZSGSRD 35859
17-03-17 22:54:42.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:42.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:54:42.798 -07 000000475 INF: FPGA: Recv ZSGSRD 35861
17-03-17 22:54:42.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:42.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:54:42.808 -07 000000627 INF: FPGA: Recv ZSGSRD 35860
17-03-17 22:54:42.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:42.818 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:54:42.818 -07 000000475 INF: FPGA: Recv ZPIEZORD 31860
17-03-17 22:54:42.828 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:42.828 -07 000000610 INF: Z Motor: Piezo is near 48.1 V (nominally 0 to 100 V), expect near 56.9 V, since DAC is at 5.690 V. Piezo Error = -8.8 V.
17-03-17 22:54:42.828 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.7 um, Read 10 ADC samples: Avg = 35861 (-169.8 uncal um), Error = 0.9 uncal um, Median = 35860 (-169.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35856 (-169.8 uncal um), Max = 35867 (-169.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 22:54:42.828 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35861, posNoise = 6, negNoise = 5
17-03-17 22:54:42.828 -07 000000610 INF: Z Motor: After move to -0.170689, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:54:42.828 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-17 22:54:42.828 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:54:42.828 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:54:42.828 -07 000000429 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:54:42.828 -07 000000448 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:54:42.828 -07 000000482 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:54:42.828 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:54:42.828 -07 000000415 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:54:42.828 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 22:54:42.828 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:54:42.828 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:54:42.828 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:54:42.828 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:54:42.838 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 22:54:42.838 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:54:42.838 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 22:54:42.838 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:54:42.838 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 22:54:42.838 -07 000000482 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 12 ms.
17-03-17 22:54:42.848 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 22:54:42.848 -07 000000415 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 22:54:42.848 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 463 463 223 223 37464 150\n [Camera]
17-03-17 22:54:43.048 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP turning red on 193
17-03-17 22:54:43.508 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 655
17-03-17 22:54:43.508 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 655
17-03-17 22:54:43.508 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:54:43.508 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:54:43.508 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 22:54:43.508 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 655
17-03-17 22:54:43.508 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 655
17-03-17 22:54:43.518 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:54:43.518 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:54:43.518 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 22:54:43.698 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37464 848
17-03-17 22:54:43.848 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP turning grn on 998
17-03-17 22:54:43.898 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 380 ms.
17-03-17 22:54:43.898 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-17 22:54:43.898 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:54:43.898 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 383 ms.
17-03-17 22:54:43.898 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 22:54:43.898 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:54:43.898 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:54:43.898 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:54:43.898 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 22:54:43.908 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 22:54:44.078 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1221
17-03-17 22:54:44.078 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1221
17-03-17 22:54:44.078 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:54:44.078 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:54:44.078 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-17 22:54:44.078 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1221
17-03-17 22:54:44.078 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1221
17-03-17 22:54:44.078 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:54:44.078 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:54:44.078 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 22:54:44.268 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP 1414
17-03-17 22:54:44.268 -07 000000593 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:54:44.268 -07 000000610 INF: FPGA: 'CAMDBLSNAP 463 463 223 223 37464 150' command took 2 ms to send, 1413 ms to get response, and 1420 ms overall
17-03-17 22:54:44.268 -07 000000610 INF: Skipping AutoFocus in Tile 6: adopting Best-Z from the cache: -0.171030
17-03-17 22:54:44.268 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.17103 mm
17-03-17 22:54:44.268 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:54:44.268 -07 000000501 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-17 22:54:44.268 -07 000000501 INF: Y Motor: Moving to 64.0626 mm, started at 63.2241 mm, delta = 0.8385 mm
17-03-17 22:54:44.268 -07 000000486 INF: Z Motor: Entering MoveAbsStepped (DAC = 37361, sync = True, waitForSettling = False)
17-03-17 22:54:44.268 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:54:44.268 -07 000000486 INF: Z Motor: Moving to -0.171028 mm, started at -0.170702 mm, distance = -0.33 um
17-03-17 22:54:44.278 -07 000000486 INF: FPGA: Xmit ZDACW 37361\n [Z Motor]
17-03-17 22:54:44.278 -07 000000482 INF: FPGA: Recv YRDPOS 129483
17-03-17 22:54:44.278 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 22:54:44.278 -07 000000501 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:54:44.278 -07 000000501 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:54:44.278 -07 000000501 INF: Y Motor: Moving 1342 steps-17
17-03-17 22:54:44.278 -07 000000462 INF: FPGA: Recv ZDACW
17-03-17 22:54:44.288 -07 000000486 INF: FPGA: 'ZDACW 37361' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 22:54:44.288 -07 000000501 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:54:44.298 -07 000000486 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:54:44.298 -07 000000462 INF: FPGA: Recv ZDACR 37361
17-03-17 22:54:44.308 -07 000000486 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:54:44.308 -07 000000486 INF: Z Motor: MoveAbsStepped took 31 ms (did NOT wait for settling yet))
17-03-17 22:54:44.468 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 388 ms.
17-03-17 22:54:44.468 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 22:54:44.468 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:54:44.468 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 391 ms.
17-03-17 22:54:44.468 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 22:54:44.468 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:54:44.468 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:54:44.468 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:54:44.468 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 22:54:44.478 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 22:54:44.658 -07 000000409 INF: FPGA: Recv YMVTILE
17-03-17 22:54:44.658 -07 000000501 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 385 ms overall
17-03-17 22:54:44.698 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:54:44.708 -07 000000486 INF: FPGA: Recv YRDPOS 131189
17-03-17 22:54:44.708 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 22:54:44.708 -07 000000501 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:54:44.708 -07 000000501 INF: Y Motor: Position error before settling (table move) = -11 encoder counts (-0.005 mm)
17-03-17 22:54:44.708 -07 000000501 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 386 ms, distance = 0.838 mm, average velocity = 2.172 mm/sec
17-03-17 22:54:45.078 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 69, FrontChillerTemperature: 3.977204,
17-03-17 22:54:45.658 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:54:45.658 -07 000000448 INF: FPGA: Recv YRDPOS 131189
17-03-17 22:54:45.668 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:54:45.668 -07 000000501 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:54:45.688 -07 000000501 INF: Y Motor: After move to 64.062607, error = -0.005478, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:54:45.688 -07 000000501 INF: Y Motor: Position error after settling (table move) = -11 encoder counts (-0.005 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:54:45.688 -07 000000501 INF: Y Motor: Moved to 64.0571 after 1414 ms (table move)
17-03-17 22:54:45.688 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.171028 mm (DAC = 37361)
17-03-17 22:54:45.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:54:45.688 -07 000000409 INF: FPGA: Recv ZSGSRD 35912
17-03-17 22:54:45.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 22:54:45.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:54:45.698 -07 000000415 INF: FPGA: Recv ZSGSRD 35909
17-03-17 22:54:45.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:45.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:54:45.708 -07 000000547 INF: FPGA: Recv ZSGSRD 35911
17-03-17 22:54:45.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:45.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:54:45.718 -07 000000382 INF: FPGA: Recv ZSGSRD 35909
17-03-17 22:54:45.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:45.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:54:45.728 -07 000000623 INF: FPGA: Recv ZSGSRD 35922
17-03-17 22:54:45.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:45.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:54:45.738 -07 000000627 INF: FPGA: Recv ZSGSRD 35903
17-03-17 22:54:45.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:45.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:54:45.748 -07 000000462 INF: FPGA: Recv ZSGSRD 35909
17-03-17 22:54:45.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:45.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:54:45.758 -07 000000475 INF: FPGA: Recv ZSGSRD 35912
17-03-17 22:54:45.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:45.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:54:45.768 -07 000000551 INF: FPGA: Recv ZSGSRD 35910
17-03-17 22:54:45.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:45.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:54:45.778 -07 000000502 INF: FPGA: Recv ZSGSRD 35908
17-03-17 22:54:45.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:45.788 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:54:45.788 -07 000000429 INF: FPGA: Recv ZPIEZORD 31926
17-03-17 22:54:45.798 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:45.798 -07 000000610 INF: Z Motor: Piezo is near 48.2 V (nominally 0 to 100 V), expect near 57.0 V, since DAC is at 5.701 V. Piezo Error = -8.8 V.
17-03-17 22:54:45.798 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.0 um, Read 10 ADC samples: Avg = 35910 (-170.1 uncal um), Error = 0.9 uncal um, Median = 35910 (-170.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 19 (0.1 uncal um), Min = 35903 (-170.1 uncal um), Max = 35922 (-170.2 uncal um), Pos Noise = 12 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 22:54:45.798 -07 000000610 INF: Z Motor: ADC noise = 12, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35910, posNoise = 12, negNoise = 7
17-03-17 22:54:45.798 -07 000000610 INF: Z Motor: After move to -0.171028, error = 0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:54:45.798 -07 000000610 INF: Z Motor: Settle wait time = 1416 ms, measure time = 105 ms (allowed 150 ms), total time = 1521 ms
17-03-17 22:54:45.798 -07 000000610 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 22:54:45.848 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1573 ms
17-03-17 22:54:45.848 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:54:45.848 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.05712890625, Z-position -0.171016810021771. ----------
17-03-17 22:54:45.848 -07 000000610 INF: Cycle	69	Tile	6	Exposure Settings		A	463	G	223	T	223	C	463
17-03-17 22:54:45.848 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37185, sync = True, waitForSettling = True)
17-03-17 22:54:45.848 -07 000000610 INF: Z Motor: Moving to -0.170222 mm, started at -0.171017 mm, distance = 0.79 um
17-03-17 22:54:45.848 -07 000000610 INF: FPGA: Xmit ZDACW 37185\n [Z Motor]
17-03-17 22:54:45.848 -07 000000462 INF: FPGA: Recv ZDACW
17-03-17 22:54:45.858 -07 000000610 INF: FPGA: 'ZDACW 37185' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:54:45.858 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:54:45.858 -07 000000482 INF: FPGA: Recv ZDACR 37185
17-03-17 22:54:45.868 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:45.868 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:54:46.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:54:46.018 -07 000000429 INF: FPGA: Recv ZSGSRD 35788
17-03-17 22:54:46.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:54:46.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:54:46.028 -07 000000576 INF: FPGA: Recv ZSGSRD 35787
17-03-17 22:54:46.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:46.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:54:46.038 -07 000000627 INF: FPGA: Recv ZSGSRD 35786
17-03-17 22:54:46.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:46.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:54:46.048 -07 000000486 INF: FPGA: Recv ZSGSRD 35795
17-03-17 22:54:46.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:46.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:54:46.058 -07 000000547 INF: FPGA: Recv ZSGSRD 35784
17-03-17 22:54:46.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:46.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:54:46.068 -07 000000382 INF: FPGA: Recv ZSGSRD 35787
17-03-17 22:54:46.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:46.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:54:46.078 -07 000000415 INF: FPGA: Recv ZSGSRD 35786
17-03-17 22:54:46.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:46.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:54:46.088 -07 000000627 INF: FPGA: Recv ZSGSRD 35787
17-03-17 22:54:46.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:46.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:54:46.098 -07 000000462 INF: FPGA: Recv ZSGSRD 35789
17-03-17 22:54:46.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:46.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:54:46.108 -07 000000501 INF: FPGA: Recv ZSGSRD 35790
17-03-17 22:54:46.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:46.118 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:54:46.118 -07 000000593 INF: FPGA: Recv ZPIEZORD 31754
17-03-17 22:54:46.128 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:46.128 -07 000000610 INF: Z Motor: Piezo is near 47.8 V (nominally 0 to 100 V), expect near 56.7 V, since DAC is at 5.674 V. Piezo Error = -8.9 V.
17-03-17 22:54:46.128 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.2 um, Read 10 ADC samples: Avg = 35788 (-169.4 uncal um), Error = 0.9 uncal um, Median = 35787 (-169.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35784 (-169.3 uncal um), Max = 35795 (-169.4 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 22:54:46.128 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35788, posNoise = 7, negNoise = 4
17-03-17 22:54:46.128 -07 000000610 INF: Z Motor: After move to -0.170222, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:54:46.128 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-17 22:54:46.128 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:54:46.128 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:54:46.128 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:54:46.128 -07 000000482 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:54:46.128 -07 000000547 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:54:46.128 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:54:46.128 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:54:46.128 -07 000000475 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:54:46.128 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:54:46.128 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:54:46.128 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:54:46.128 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:54:46.138 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:54:46.138 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:54:46.138 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:54:46.138 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:54:46.148 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-17 22:54:46.148 -07 000000482 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 22:54:46.148 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 22:54:46.148 -07 000000547 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 22:54:46.148 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 463 463 223 223 37361 150\n [Camera]
17-03-17 22:54:46.348 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:54:46.818 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 655
17-03-17 22:54:46.818 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 655
17-03-17 22:54:46.818 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:54:46.818 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 655
17-03-17 22:54:46.818 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 655
17-03-17 22:54:46.818 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:54:46.818 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:54:46.818 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 22:54:46.828 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:54:46.828 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 22:54:47.008 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37361 848
17-03-17 22:54:47.018 -07 000000541 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:54:47.018 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 68. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1095, R2=1131, Total=2226. Warn if over 250 bubbles per interval.
17-03-17 22:54:47.158 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP turning grn on 998
17-03-17 22:54:47.208 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 386 ms.
17-03-17 22:54:47.208 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 22:54:47.208 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:54:47.208 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 386 ms.
17-03-17 22:54:47.208 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 22:54:47.208 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:54:47.208 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:54:47.208 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 22:54:47.218 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:54:47.218 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-17 22:54:47.378 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1221
17-03-17 22:54:47.378 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1221
17-03-17 22:54:47.378 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:54:47.388 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1221
17-03-17 22:54:47.388 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1221
17-03-17 22:54:47.388 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:54:47.388 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:54:47.388 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-17 22:54:47.398 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:54:47.398 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 22:54:47.568 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP 1414
17-03-17 22:54:47.568 -07 000000409 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:54:47.568 -07 000000610 INF: FPGA: 'CAMDBLSNAP 463 463 223 223 37361 150' command took 2 ms to send, 1409 ms to get response, and 1420 ms overall
17-03-17 22:54:47.578 -07 000000610 INF: Skipping AutoFocus in Tile 7: adopting Best-Z from the cache: -0.170727
17-03-17 22:54:47.578 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.17073 mm
17-03-17 22:54:47.578 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:54:47.578 -07 000000502 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-17 22:54:47.578 -07 000000502 INF: Y Motor: Moving to 64.8926 mm, started at 64.0571 mm, delta = 0.8355 mm
17-03-17 22:54:47.578 -07 000000593 INF: Z Motor: Entering MoveAbsStepped (DAC = 37295, sync = True, waitForSettling = False)
17-03-17 22:54:47.578 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:54:47.578 -07 000000593 INF: Z Motor: Moving to -0.170726 mm, started at -0.170233 mm, distance = -0.49 um
17-03-17 22:54:47.578 -07 000000462 INF: FPGA: Recv YRDPOS 131189
17-03-17 22:54:47.588 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 22:54:47.588 -07 000000502 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:54:47.588 -07 000000502 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:54:47.588 -07 000000502 INF: Y Motor: Moving 1337 steps-11
17-03-17 22:54:47.588 -07 000000593 INF: FPGA: Xmit ZDACW 37295\n [Z Motor]
17-03-17 22:54:47.588 -07 000000623 INF: FPGA: Recv ZDACW
17-03-17 22:54:47.598 -07 000000593 INF: FPGA: 'ZDACW 37295' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 22:54:47.598 -07 000000502 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:54:47.608 -07 000000593 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:54:47.608 -07 000000475 INF: FPGA: Recv ZDACR 37295
17-03-17 22:54:47.618 -07 000000593 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-17 22:54:47.618 -07 000000593 INF: Z Motor: MoveAbsStepped took 35 ms (did NOT wait for settling yet))
17-03-17 22:54:47.768 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 375 ms.
17-03-17 22:54:47.768 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-17 22:54:47.768 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:54:47.768 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:54:47.768 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 22:54:47.768 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 22:54:47.768 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 22:54:47.768 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:54:47.778 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:54:47.778 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 22:54:47.978 -07 000000382 INF: FPGA: Recv YMVTILE
17-03-17 22:54:47.978 -07 000000502 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 389 ms overall
17-03-17 22:54:48.008 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:54:48.018 -07 000000576 INF: FPGA: Recv YRDPOS 132872
17-03-17 22:54:48.018 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 22:54:48.018 -07 000000502 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:54:48.018 -07 000000502 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 22:54:48.018 -07 000000502 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 389 ms, distance = 0.835 mm, average velocity = 2.148 mm/sec
17-03-17 22:54:48.968 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:54:48.968 -07 000000482 INF: FPGA: Recv YRDPOS 132872
17-03-17 22:54:48.978 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:54:48.978 -07 000000502 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:54:48.998 -07 000000502 INF: Y Motor: After move to 64.892609, error = -0.013702, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:54:48.998 -07 000000502 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:54:48.998 -07 000000502 INF: Y Motor: Moved to 64.8789 after 1422 ms (table move)
17-03-17 22:54:48.998 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.170726 mm (DAC = 37295)
17-03-17 22:54:48.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:54:49.008 -07 000000409 INF: FPGA: Recv ZSGSRD 35869
17-03-17 22:54:49.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-17 22:54:49.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:54:49.008 -07 000000478 INF: FPGA: Recv ZSGSRD 35859
17-03-17 22:54:49.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:54:49.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:54:49.018 -07 000000382 INF: FPGA: Recv ZSGSRD 35864
17-03-17 22:54:49.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:49.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:54:49.028 -07 000000415 INF: FPGA: Recv ZSGSRD 35871
17-03-17 22:54:49.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:49.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:54:49.038 -07 000000623 INF: FPGA: Recv ZSGSRD 35868
17-03-17 22:54:49.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:49.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:54:49.048 -07 000000501 INF: FPGA: Recv ZSGSRD 35875
17-03-17 22:54:49.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:49.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:54:49.058 -07 000000478 INF: FPGA: Recv ZSGSRD 35863
17-03-17 22:54:49.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:49.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:54:49.068 -07 000000448 INF: FPGA: Recv ZSGSRD 35864
17-03-17 22:54:49.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:49.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:54:49.078 -07 000000593 INF: FPGA: Recv ZSGSRD 35870
17-03-17 22:54:49.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:49.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:54:49.088 -07 000000618 INF: FPGA: Recv ZSGSRD 35870
17-03-17 22:54:49.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:49.098 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:54:49.098 -07 000000409 INF: FPGA: Recv ZPIEZORD 31862
17-03-17 22:54:49.108 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:49.108 -07 000000610 INF: Z Motor: Piezo is near 48.1 V (nominally 0 to 100 V), expect near 56.9 V, since DAC is at 5.691 V. Piezo Error = -8.8 V.
17-03-17 22:54:49.108 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.7 um, Read 10 ADC samples: Avg = 35867 (-169.9 uncal um), Error = 0.9 uncal um, Median = 35868 (-169.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 35859 (-169.8 uncal um), Max = 35875 (-169.9 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 22:54:49.108 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35867, posNoise = 8, negNoise = 8
17-03-17 22:54:49.108 -07 000000610 INF: Z Motor: After move to -0.170726, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:54:49.108 -07 000000610 INF: Z Motor: Settle wait time = 1424 ms, measure time = 102 ms (allowed 150 ms), total time = 1526 ms
17-03-17 22:54:49.108 -07 000000610 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 22:54:49.158 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1578 ms
17-03-17 22:54:49.158 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:54:49.158 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87890625, Z-position -0.170740568899675. ----------
17-03-17 22:54:49.158 -07 000000610 INF: Cycle	69	Tile	7	Exposure Settings		A	463	G	223	T	223	C	463
17-03-17 22:54:49.158 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37119, sync = True, waitForSettling = True)
17-03-17 22:54:49.158 -07 000000610 INF: Z Motor: Moving to -0.169920 mm, started at -0.170741 mm, distance = 0.82 um
17-03-17 22:54:49.158 -07 000000610 INF: FPGA: Xmit ZDACW 37119\n [Z Motor]
17-03-17 22:54:49.158 -07 000000627 INF: FPGA: Recv ZDACW
17-03-17 22:54:49.168 -07 000000610 INF: FPGA: 'ZDACW 37119' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:54:49.168 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:54:49.168 -07 000000382 INF: FPGA: Recv ZDACR 37119
17-03-17 22:54:49.178 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:49.178 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:54:49.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:54:49.328 -07 000000501 INF: FPGA: Recv ZSGSRD 35741
17-03-17 22:54:49.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:54:49.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:54:49.338 -07 000000502 INF: FPGA: Recv ZSGSRD 35741
17-03-17 22:54:49.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:49.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:54:49.348 -07 000000409 INF: FPGA: Recv ZSGSRD 35742
17-03-17 22:54:49.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:49.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:54:49.358 -07 000000593 INF: FPGA: Recv ZSGSRD 35742
17-03-17 22:54:49.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:49.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:54:49.368 -07 000000475 INF: FPGA: Recv ZSGSRD 35741
17-03-17 22:54:49.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:49.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:54:49.378 -07 000000482 INF: FPGA: Recv ZSGSRD 35735
17-03-17 22:54:49.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:49.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:54:49.388 -07 000000618 INF: FPGA: Recv ZSGSRD 35738
17-03-17 22:54:49.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:49.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:54:49.398 -07 000000448 INF: FPGA: Recv ZSGSRD 35744
17-03-17 22:54:49.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:49.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:54:49.408 -07 000000627 INF: FPGA: Recv ZSGSRD 35743
17-03-17 22:54:49.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:49.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:54:49.418 -07 000000486 INF: FPGA: Recv ZSGSRD 35741
17-03-17 22:54:49.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:49.428 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:54:49.428 -07 000000415 INF: FPGA: Recv ZPIEZORD 31703
17-03-17 22:54:49.438 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:49.438 -07 000000610 INF: Z Motor: Piezo is near 47.7 V (nominally 0 to 100 V), expect near 56.6 V, since DAC is at 5.664 V. Piezo Error = -8.9 V.
17-03-17 22:54:49.438 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.9 um, Read 10 ADC samples: Avg = 35741 (-169.1 uncal um), Error = 0.9 uncal um, Median = 35741 (-169.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35735 (-169.0 uncal um), Max = 35744 (-169.1 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 22:54:49.438 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35741, posNoise = 3, negNoise = 6
17-03-17 22:54:49.438 -07 000000610 INF: Z Motor: After move to -0.169920, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:54:49.438 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-17 22:54:49.438 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:54:49.438 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:54:49.438 -07 000000448 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:54:49.438 -07 000000409 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:54:49.438 -07 000000486 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:54:49.438 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:54:49.438 -07 000000475 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:54:49.438 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:54:49.438 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:54:49.438 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:54:49.438 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:54:49.438 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:54:49.448 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 22:54:49.448 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:54:49.448 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 22:54:49.448 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:54:49.458 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 22:54:49.458 -07 000000486 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 22:54:49.458 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 22:54:49.458 -07 000000475 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 22:54:49.468 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 463 463 223 223 37295 150\n [Camera]
17-03-17 22:54:49.668 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:54:50.128 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 655
17-03-17 22:54:50.128 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 655
17-03-17 22:54:50.128 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:54:50.128 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 655
17-03-17 22:54:50.128 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 655
17-03-17 22:54:50.128 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:54:50.128 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:54:50.128 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 1094749800, 0x0, 418435064) start.
17-03-17 22:54:50.138 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:54:50.138 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-17 22:54:50.318 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37295 848
17-03-17 22:54:50.438 -07 000000448 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 69, FrontChillerTemperature: 3.977204,
17-03-17 22:54:50.548 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 416 ms.
17-03-17 22:54:50.548 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 416 ms.
17-03-17 22:54:50.548 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:54:50.548 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning grn on 998
17-03-17 22:54:50.558 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 1094749800, 0x0, 418435064) end. Duration was 420 ms.
17-03-17 22:54:50.558 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 422 ms.
17-03-17 22:54:50.558 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:54:50.558 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 22:54:50.558 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 429 ms.
17-03-17 22:54:50.558 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:54:50.568 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 434 ms.
17-03-17 22:54:50.698 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1221
17-03-17 22:54:50.698 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1221
17-03-17 22:54:50.698 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:54:50.698 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1221
17-03-17 22:54:50.698 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1221
17-03-17 22:54:50.698 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:54:50.698 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:54:50.698 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 22:54:50.698 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:54:50.698 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 22:54:50.888 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP 1413
17-03-17 22:54:50.888 -07 000000627 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:54:50.888 -07 000000610 INF: FPGA: 'CAMDBLSNAP 463 463 223 223 37295 150' command took 2 ms to send, 1412 ms to get response, and 1420 ms overall
17-03-17 22:54:50.888 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 22:54:50.888 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.87890625, Z-Position -0.169931118169813. ------
17-03-17 22:54:50.888 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:54:50.888 -07 000000502 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.17647 mm
17-03-17 22:54:50.888 -07 000000502 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:54:50.898 -07 000000486 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:54:50.898 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:54:50.898 -07 000000501 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:54:50.898 -07 000000382 INF: Z Motor: Entering MoveAbsStepped (DAC = 38551, sync = True, waitForSettling = False)
17-03-17 22:54:50.898 -07 000000382 INF: Z Motor: Moving to -0.176475 mm, started at -0.169931 mm, distance = -6.54 um
17-03-17 22:54:50.898 -07 000000415 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-17 22:54:50.898 -07 000000415 INF: Y Motor: Moving to 65.7226 mm, started at 64.8789 mm, delta = 0.8437 mm
17-03-17 22:54:50.918 -07 000000382 INF: FPGA: Xmit ZDACW 38551\n [Z Motor]
17-03-17 22:54:50.918 -07 000000618 INF: FPGA: Recv ZDACW
17-03-17 22:54:50.928 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:54:50.928 -07 000000382 INF: FPGA: 'ZDACW 38551' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-17 22:54:50.928 -07 000000547 INF: FPGA: Recv YRDPOS 132872
17-03-17 22:54:50.938 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 37 ms overall
17-03-17 22:54:50.938 -07 000000415 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:54:50.938 -07 000000415 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:54:50.938 -07 000000415 INF: Y Motor: Moving 1350 steps-28
17-03-17 22:54:50.948 -07 000000382 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:54:50.948 -07 000000475 INF: FPGA: Recv ZDACR 38551
17-03-17 22:54:50.958 -07 000000382 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:54:50.958 -07 000000382 INF: Z Motor: MoveAbsStepped took 57 ms (did NOT wait for settling yet))
17-03-17 22:54:50.958 -07 000000415 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:54:51.078 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 22:54:51.078 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-17 22:54:51.078 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:54:51.078 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 373 ms.
17-03-17 22:54:51.078 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-17 22:54:51.078 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:54:51.078 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:54:51.078 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 22:54:51.078 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:54:51.088 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 22:54:51.098 -07 000000475 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:54:51.098 -07 000000501 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-17 22:54:51.328 -07 000000576 INF: FPGA: Recv YMVTILE
17-03-17 22:54:51.328 -07 000000415 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 398 ms overall
17-03-17 22:54:51.368 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:54:51.378 -07 000000429 INF: FPGA: Recv YRDPOS 134582
17-03-17 22:54:51.388 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:54:51.388 -07 000000415 INF: Y Motor: Encoder = 134582 = motor step 105142.2 = 65.7139 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:54:51.388 -07 000000415 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-17 22:54:51.388 -07 000000415 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.844 mm, average velocity = 2.120 mm/sec
17-03-17 22:54:52.018 -07 000000593 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:54:52.018 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 68. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1095, R2=1131, Total=2226. Warn if over 250 bubbles per interval.
17-03-17 22:54:52.338 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:54:52.338 -07 000000478 INF: FPGA: Recv YRDPOS 134583
17-03-17 22:54:52.348 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:54:52.348 -07 000000415 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:54:52.368 -07 000000415 INF: Y Motor: After move to 65.722610, error = -0.008255, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:54:52.368 -07 000000415 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 22:54:52.368 -07 000000415 INF: Y Motor: Moved to 65.7144 after 1474 ms (table move)
17-03-17 22:54:52.378 -07 000000502 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176475 mm (DAC = 38551)
17-03-17 22:54:52.378 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:54:52.378 -07 000000448 INF: FPGA: Recv ZSGSRD 36764
17-03-17 22:54:52.388 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:52.388 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:54:52.388 -07 000000627 INF: FPGA: Recv ZSGSRD 36764
17-03-17 22:54:52.398 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:52.398 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:54:52.398 -07 000000576 INF: FPGA: Recv ZSGSRD 36765
17-03-17 22:54:52.408 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:52.408 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:54:52.408 -07 000000501 INF: FPGA: Recv ZSGSRD 36757
17-03-17 22:54:52.418 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:52.418 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:54:52.418 -07 000000415 INF: FPGA: Recv ZSGSRD 36754
17-03-17 22:54:52.428 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:52.428 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:54:52.428 -07 000000551 INF: FPGA: Recv ZSGSRD 36763
17-03-17 22:54:52.438 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:52.438 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:54:52.438 -07 000000475 INF: FPGA: Recv ZSGSRD 36761
17-03-17 22:54:52.448 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:52.448 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:54:52.448 -07 000000576 INF: FPGA: Recv ZSGSRD 36760
17-03-17 22:54:52.458 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:52.458 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:54:52.458 -07 000000409 INF: FPGA: Recv ZSGSRD 36760
17-03-17 22:54:52.468 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:52.468 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:54:52.468 -07 000000627 INF: FPGA: Recv ZSGSRD 36764
17-03-17 22:54:52.478 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:52.478 -07 000000502 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:54:52.478 -07 000000482 INF: FPGA: Recv ZPIEZORD 33068
17-03-17 22:54:52.488 -07 000000502 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:52.488 -07 000000502 INF: Z Motor: Piezo is near 50.6 V (nominally 0 to 100 V), expect near 58.8 V, since DAC is at 5.883 V. Piezo Error = -8.2 V.
17-03-17 22:54:52.488 -07 000000502 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.5 um, Read 10 ADC samples: Avg = 36761 (-175.6 uncal um), Error = 0.9 uncal um, Median = 36762 (-175.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36754 (-175.5 uncal um), Max = 36765 (-175.6 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 22:54:52.488 -07 000000502 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36761, posNoise = 4, negNoise = 7
17-03-17 22:54:52.488 -07 000000502 INF: Z Motor: After move to -0.176475, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:54:52.488 -07 000000502 INF: Z Motor: Settle wait time = 1478 ms, measure time = 110 ms (allowed 150 ms), total time = 1588 ms
17-03-17 22:54:52.488 -07 000000502 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-17 22:54:52.528 -07 000000502 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1632 ms
17-03-17 22:54:52.528 -07 000000502 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:54:52.528 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:54:52.528 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:54:52.528 -07 000000593 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:54:52.528 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:54:52.528 -07 000000551 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:54:52.528 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:54:52.528 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:54:52.528 -07 000000551 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:54:52.538 -07 000000551 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:54:52.538 -07 000000551 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:54:52.548 -07 000000551 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 22:54:52.548 -07 000000551 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-17 22:54:52.548 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:54:52.588 -07 000000462 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:54:52.788 -07 000000593 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:54:52.788 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:54:52.788 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:54:52.798 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2182910056, 0x0, 559484976) start.
17-03-17 22:54:52.828 -07 000000482 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:54:52.828 -07 000000415 INF: FPGA: Recv CAMSNAP
17-03-17 22:54:52.828 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 285 ms overall
17-03-17 22:54:52.918 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2182910056, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 22:54:52.918 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:54:52.918 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:54:52.918 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-17 22:54:53.028 -07 000000547 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:54:53.028 -07 000000501 INF: Autofocus start
17-03-17 22:54:53.028 -07 000000501 INF: MeasureProfile start
17-03-17 22:54:53.028 -07 000000486 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:54:53.038 -07 000000547 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:54:53.038 -07 000000547 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:54:53.038 -07 000000501 INF: MeasureProfile done
17-03-17 22:54:53.038 -07 000000501 INF: X=48  Z correction [um]=0.1739867
17-03-17 22:54:53.038 -07 000000501 INF: Autofocus finished
17-03-17 22:54:53.238 -07 000000448 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:54:53.238 -07 000000547 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:54:53.238 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.71435546875, Z-position -0.176483814554409. ----------
17-03-17 22:54:53.248 -07 000000610 INF: Cycle	69	Tile	8	Exposure Settings		A	463	G	223	T	223	C	463
17-03-17 22:54:53.248 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37101, sync = True, waitForSettling = True)
17-03-17 22:54:53.248 -07 000000610 INF: Z Motor: Moving to -0.169837 mm, started at -0.176484 mm, distance = 6.65 um
17-03-17 22:54:53.248 -07 000000610 INF: FPGA: Xmit ZDACW 37101\n [Z Motor]
17-03-17 22:54:53.248 -07 000000382 INF: FPGA: Recv ZDACW
17-03-17 22:54:53.258 -07 000000610 INF: FPGA: 'ZDACW 37101' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:54:53.258 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:54:53.258 -07 000000448 INF: FPGA: Recv ZDACR 37101
17-03-17 22:54:53.268 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:53.268 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:54:53.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:54:53.418 -07 000000623 INF: FPGA: Recv ZSGSRD 35729
17-03-17 22:54:53.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:54:53.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:54:53.428 -07 000000415 INF: FPGA: Recv ZSGSRD 35725
17-03-17 22:54:53.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:53.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:54:53.438 -07 000000409 INF: FPGA: Recv ZSGSRD 35728
17-03-17 22:54:53.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:53.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:54:53.448 -07 000000576 INF: FPGA: Recv ZSGSRD 35726
17-03-17 22:54:53.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:53.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:54:53.458 -07 000000478 INF: FPGA: Recv ZSGSRD 35724
17-03-17 22:54:53.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:53.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:54:53.468 -07 000000475 INF: FPGA: Recv ZSGSRD 35728
17-03-17 22:54:53.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:53.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:54:53.478 -07 000000502 INF: FPGA: Recv ZSGSRD 35724
17-03-17 22:54:53.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:53.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:54:53.488 -07 000000486 INF: FPGA: Recv ZSGSRD 35729
17-03-17 22:54:53.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:53.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:54:53.498 -07 000000551 INF: FPGA: Recv ZSGSRD 35729
17-03-17 22:54:53.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:53.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:54:53.508 -07 000000502 INF: FPGA: Recv ZSGSRD 35732
17-03-17 22:54:53.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:53.518 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:54:53.518 -07 000000409 INF: FPGA: Recv ZPIEZORD 31633
17-03-17 22:54:53.528 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:53.528 -07 000000610 INF: Z Motor: Piezo is near 47.6 V (nominally 0 to 100 V), expect near 56.6 V, since DAC is at 5.661 V. Piezo Error = -9.0 V.
17-03-17 22:54:53.528 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.8 um, Read 10 ADC samples: Avg = 35727 (-169.0 uncal um), Error = 0.9 uncal um, Median = 35728 (-169.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35724 (-168.9 uncal um), Max = 35732 (-169.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 22:54:53.528 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35727, posNoise = 5, negNoise = 3
17-03-17 22:54:53.528 -07 000000610 INF: Z Motor: After move to -0.169837, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:54:53.528 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 22:54:53.528 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:54:53.528 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:54:53.528 -07 000000486 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:54:53.528 -07 000000448 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:54:53.528 -07 000000627 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:54:53.528 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:54:53.528 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:54:53.528 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:54:53.528 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 22:54:53.528 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:54:53.528 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:54:53.528 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:54:53.528 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:54:53.528 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:54:53.538 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:54:53.538 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:54:53.538 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 22:54:53.538 -07 000000627 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 22:54:53.538 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 22:54:53.538 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 22:54:53.548 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 463 463 223 223 37278 150\n [Camera]
17-03-17 22:54:53.748 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP turning red on 195
17-03-17 22:54:54.208 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 655
17-03-17 22:54:54.208 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 655
17-03-17 22:54:54.208 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:54:54.218 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 655
17-03-17 22:54:54.218 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 655
17-03-17 22:54:54.218 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:54:54.218 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:54:54.218 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) start.
17-03-17 22:54:54.218 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:54:54.218 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 22:54:54.408 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37278 848
17-03-17 22:54:54.548 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning grn on 998
17-03-17 22:54:54.588 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 374 ms.
17-03-17 22:54:54.588 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 374 ms.
17-03-17 22:54:54.588 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:54:54.588 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) end. Duration was 377 ms.
17-03-17 22:54:54.588 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-17 22:54:54.588 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:54:54.598 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:54:54.598 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 22:54:54.598 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:54:54.608 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 22:54:54.778 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1221
17-03-17 22:54:54.778 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1221
17-03-17 22:54:54.778 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:54:54.778 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1221
17-03-17 22:54:54.778 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1221
17-03-17 22:54:54.778 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:54:54.778 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 1165594328, 0x0, 391868352) start.
17-03-17 22:54:54.778 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:54:54.778 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:54:54.778 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-17 22:54:54.968 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP 1414
17-03-17 22:54:54.968 -07 000000541 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:54:54.968 -07 000000610 INF: FPGA: 'CAMDBLSNAP 463 463 223 223 37278 150' command took 2 ms to send, 1415 ms to get response, and 1421 ms overall
17-03-17 22:54:54.968 -07 000000610 INF: Skipping AutoFocus in Tile 9: adopting Best-Z from the cache: -0.170185
17-03-17 22:54:54.968 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.17018 mm
17-03-17 22:54:54.968 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:54:54.978 -07 000000623 INF: Z Motor: Entering MoveAbsStepped (DAC = 37177, sync = True, waitForSettling = False)
17-03-17 22:54:54.978 -07 000000623 INF: Z Motor: Moving to -0.170185 mm, started at -0.169841 mm, distance = -0.34 um
17-03-17 22:54:54.978 -07 000000409 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-17 22:54:54.978 -07 000000409 INF: Y Motor: Moving to 66.5526 mm, started at 65.7144 mm, delta = 0.8382 mm
17-03-17 22:54:54.978 -07 000000623 INF: FPGA: Xmit ZDACW 37177\n [Z Motor]
17-03-17 22:54:54.978 -07 000000429 INF: FPGA: Recv ZDACW
17-03-17 22:54:54.988 -07 000000623 INF: FPGA: 'ZDACW 37177' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:54:54.988 -07 000000409 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:54:54.988 -07 000000382 INF: FPGA: Recv YRDPOS 134583
17-03-17 22:54:54.998 -07 000000409 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-17 22:54:54.998 -07 000000409 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:54:54.998 -07 000000409 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:54:54.998 -07 000000409 INF: Y Motor: Moving 1341 steps-18
17-03-17 22:54:54.998 -07 000000623 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:54:54.998 -07 000000415 INF: FPGA: Recv ZDACR 37177
17-03-17 22:54:55.008 -07 000000623 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:54:55.008 -07 000000623 INF: Z Motor: MoveAbsStepped took 27 ms (did NOT wait for settling yet))
17-03-17 22:54:55.008 -07 000000409 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:54:55.178 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 395 ms.
17-03-17 22:54:55.178 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 22:54:55.178 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:54:55.178 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 1165594328, 0x0, 391868352) end. Duration was 396 ms.
17-03-17 22:54:55.178 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 22:54:55.178 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:54:55.178 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:54:55.178 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:54:55.178 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 22:54:55.188 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-17 22:54:55.378 -07 000000547 INF: FPGA: Recv YMVTILE
17-03-17 22:54:55.378 -07 000000409 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-17 22:54:55.418 -07 000000409 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:54:55.428 -07 000000429 INF: FPGA: Recv YRDPOS 136272
17-03-17 22:54:55.428 -07 000000409 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 22:54:55.428 -07 000000409 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:54:55.428 -07 000000409 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 22:54:55.428 -07 000000409 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.838 mm, average velocity = 2.160 mm/sec
17-03-17 22:54:55.908 -07 000000415 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 69, FrontChillerTemperature: 4.03576,
17-03-17 22:54:56.378 -07 000000409 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:54:56.378 -07 000000576 INF: FPGA: Recv YRDPOS 136272
17-03-17 22:54:56.388 -07 000000409 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:56.388 -07 000000409 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:54:56.408 -07 000000409 INF: Y Motor: After move to 66.552605, error = -0.013542, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:54:56.408 -07 000000409 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:54:56.408 -07 000000409 INF: Y Motor: Moved to 66.5391 after 1432 ms (table move)
17-03-17 22:54:56.408 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.170185 mm (DAC = 37177)
17-03-17 22:54:56.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:54:56.418 -07 000000462 INF: FPGA: Recv ZSGSRD 35791
17-03-17 22:54:56.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 22:54:56.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:54:56.418 -07 000000429 INF: FPGA: Recv ZSGSRD 35780
17-03-17 22:54:56.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:54:56.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:54:56.428 -07 000000551 INF: FPGA: Recv ZSGSRD 35784
17-03-17 22:54:56.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:56.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:54:56.438 -07 000000576 INF: FPGA: Recv ZSGSRD 35786
17-03-17 22:54:56.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:56.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:54:56.448 -07 000000482 INF: FPGA: Recv ZSGSRD 35771
17-03-17 22:54:56.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:56.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:54:56.458 -07 000000475 INF: FPGA: Recv ZSGSRD 35781
17-03-17 22:54:56.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:56.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:54:56.468 -07 000000478 INF: FPGA: Recv ZSGSRD 35785
17-03-17 22:54:56.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:56.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:54:56.478 -07 000000415 INF: FPGA: Recv ZSGSRD 35780
17-03-17 22:54:56.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:56.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:54:56.488 -07 000000382 INF: FPGA: Recv ZSGSRD 35779
17-03-17 22:54:56.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:56.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:54:56.498 -07 000000448 INF: FPGA: Recv ZSGSRD 35785
17-03-17 22:54:56.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:56.508 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:54:56.508 -07 000000502 INF: FPGA: Recv ZPIEZORD 31748
17-03-17 22:54:56.518 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:56.518 -07 000000610 INF: Z Motor: Piezo is near 47.8 V (nominally 0 to 100 V), expect near 56.7 V, since DAC is at 5.673 V. Piezo Error = -8.9 V.
17-03-17 22:54:56.518 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.2 um, Read 10 ADC samples: Avg = 35782 (-169.3 uncal um), Error = 0.9 uncal um, Median = 35782 (-169.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 20 (0.1 uncal um), Min = 35771 (-169.2 uncal um), Max = 35791 (-169.4 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 11 (0.1 uncal um)
17-03-17 22:54:56.518 -07 000000610 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35782, posNoise = 9, negNoise = 11
17-03-17 22:54:56.518 -07 000000610 INF: Z Motor: After move to -0.170185, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:54:56.518 -07 000000610 INF: Z Motor: Settle wait time = 1436 ms, measure time = 102 ms (allowed 150 ms), total time = 1538 ms
17-03-17 22:54:56.518 -07 000000610 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 22:54:56.568 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1592 ms
17-03-17 22:54:56.568 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:54:56.568 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.5390625, Z-position -0.170194510867626. ----------
17-03-17 22:54:56.568 -07 000000610 INF: Cycle	69	Tile	9	Exposure Settings		A	463	G	223	T	223	C	463
17-03-17 22:54:56.568 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37000, sync = True, waitForSettling = True)
17-03-17 22:54:56.568 -07 000000610 INF: Z Motor: Moving to -0.169375 mm, started at -0.170195 mm, distance = 0.82 um
17-03-17 22:54:56.568 -07 000000610 INF: FPGA: Xmit ZDACW 37000\n [Z Motor]
17-03-17 22:54:56.578 -07 000000415 INF: FPGA: Recv ZDACW
17-03-17 22:54:56.588 -07 000000610 INF: FPGA: 'ZDACW 37000' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:54:56.588 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:54:56.588 -07 000000541 INF: FPGA: Recv ZDACR 37000
17-03-17 22:54:56.598 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:56.598 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:54:56.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:54:56.748 -07 000000502 INF: FPGA: Recv ZSGSRD 35647
17-03-17 22:54:56.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:56.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:54:56.758 -07 000000478 INF: FPGA: Recv ZSGSRD 35654
17-03-17 22:54:56.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:56.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:54:56.768 -07 000000475 INF: FPGA: Recv ZSGSRD 35652
17-03-17 22:54:56.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:56.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:54:56.778 -07 000000462 INF: FPGA: Recv ZSGSRD 35655
17-03-17 22:54:56.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:56.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:54:56.788 -07 000000593 INF: FPGA: Recv ZSGSRD 35653
17-03-17 22:54:56.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:56.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:54:56.798 -07 000000618 INF: FPGA: Recv ZSGSRD 35657
17-03-17 22:54:56.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:56.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:54:56.808 -07 000000482 INF: FPGA: Recv ZSGSRD 35652
17-03-17 22:54:56.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:56.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:54:56.818 -07 000000382 INF: FPGA: Recv ZSGSRD 35652
17-03-17 22:54:56.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:56.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:54:56.828 -07 000000415 INF: FPGA: Recv ZSGSRD 35657
17-03-17 22:54:56.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:56.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:54:56.838 -07 000000627 INF: FPGA: Recv ZSGSRD 35660
17-03-17 22:54:56.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:56.848 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:54:56.848 -07 000000547 INF: FPGA: Recv ZPIEZORD 31535
17-03-17 22:54:56.858 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:56.858 -07 000000610 INF: Z Motor: Piezo is near 47.4 V (nominally 0 to 100 V), expect near 56.5 V, since DAC is at 5.646 V. Piezo Error = -9.1 V.
17-03-17 22:54:56.858 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.4 um, Read 10 ADC samples: Avg = 35654 (-168.5 uncal um), Error = 0.9 uncal um, Median = 35654 (-168.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35647 (-168.5 uncal um), Max = 35660 (-168.5 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 22:54:56.858 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35654, posNoise = 6, negNoise = 7
17-03-17 22:54:56.858 -07 000000610 INF: Z Motor: After move to -0.169375, error = 0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:54:56.858 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 22:54:56.858 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:54:56.858 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:54:56.858 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:54:56.858 -07 000000627 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:54:56.858 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:54:56.858 -07 000000593 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:54:56.858 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:54:56.858 -07 000000475 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:54:56.858 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:54:56.858 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:54:56.858 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:54:56.858 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:54:56.868 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:54:56.868 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:54:56.868 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:54:56.868 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:54:56.868 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 22:54:56.868 -07 000000593 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 22:54:56.878 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 22:54:56.878 -07 000000627 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 22:54:56.878 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 463 463 223 223 37177 150\n [Camera]
17-03-17 22:54:57.018 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:54:57.018 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 68. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1095, R2=1131, Total=2226. Warn if over 250 bubbles per interval.
17-03-17 22:54:57.078 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:54:57.538 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 655
17-03-17 22:54:57.538 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 655
17-03-17 22:54:57.538 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:54:57.538 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:54:57.538 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-17 22:54:57.548 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 655
17-03-17 22:54:57.548 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 655
17-03-17 22:54:57.548 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:54:57.678 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:54:57.678 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-17 22:54:57.728 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37177 848
17-03-17 22:54:57.878 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP turning grn on 998
17-03-17 22:54:57.928 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 387 ms.
17-03-17 22:54:57.928 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 22:54:57.928 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:54:57.928 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:54:57.928 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 22:54:58.048 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 369 ms.
17-03-17 22:54:58.048 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 369 ms.
17-03-17 22:54:58.048 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:54:58.048 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:54:58.058 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 511 ms.
17-03-17 22:54:58.108 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1221
17-03-17 22:54:58.108 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1221
17-03-17 22:54:58.108 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:54:58.108 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1221
17-03-17 22:54:58.108 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1221
17-03-17 22:54:58.108 -07 000000409 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:54:58.108 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:54:58.108 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 22:54:58.118 -07 000000409 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:54:58.118 -07 000000409 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 22:54:58.298 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP 1413
17-03-17 22:54:58.298 -07 000000501 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:54:58.298 -07 000000610 INF: FPGA: 'CAMDBLSNAP 463 463 223 223 37177 150' command took 2 ms to send, 1413 ms to get response, and 1420 ms overall
17-03-17 22:54:58.298 -07 000000610 INF: Skipping AutoFocus in Tile 10: adopting Best-Z from the cache: -0.170141
17-03-17 22:54:58.298 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.17014 mm
17-03-17 22:54:58.298 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:54:58.308 -07 000000541 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-17 22:54:58.308 -07 000000541 INF: Y Motor: Moving to 67.3826 mm, started at 66.5391 mm, delta = 0.8435 mm
17-03-17 22:54:58.308 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:54:58.308 -07 000000547 INF: Z Motor: Entering MoveAbsStepped (DAC = 37167, sync = True, waitForSettling = False)
17-03-17 22:54:58.308 -07 000000547 INF: Z Motor: Moving to -0.170140 mm, started at -0.169372 mm, distance = -0.77 um
17-03-17 22:54:58.308 -07 000000478 INF: FPGA: Recv YRDPOS 136273
17-03-17 22:54:58.318 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:58.318 -07 000000541 INF: Y Motor: Encoder = 136273 = motor step 106463.3 = 66.5396 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:54:58.318 -07 000000547 INF: FPGA: Xmit ZDACW 37167\n [Z Motor]
17-03-17 22:54:58.318 -07 000000482 INF: FPGA: Recv ZDACW
17-03-17 22:54:58.318 -07 000000541 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:54:58.318 -07 000000541 INF: Y Motor: Moving 1349 steps-28
17-03-17 22:54:58.328 -07 000000547 INF: FPGA: 'ZDACW 37167' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-17 22:54:58.328 -07 000000547 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:54:58.328 -07 000000478 INF: FPGA: Recv ZDACR 37167
17-03-17 22:54:58.338 -07 000000541 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:54:58.338 -07 000000547 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:58.338 -07 000000547 INF: Z Motor: MoveAbsStepped took 28 ms (did NOT wait for settling yet))
17-03-17 22:54:58.488 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 22:54:58.488 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 22:54:58.488 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:54:58.488 -07 000000409 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 22:54:58.488 -07 000000409 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 22:54:58.488 -07 000000409 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:54:58.498 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:54:58.498 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 22:54:58.498 -07 000000409 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:54:58.508 -07 000000409 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 22:54:58.708 -07 000000382 INF: FPGA: Recv YMVTILE
17-03-17 22:54:58.708 -07 000000541 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 367 ms to get response, and 393 ms overall
17-03-17 22:54:58.748 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:54:58.758 -07 000000482 INF: FPGA: Recv YRDPOS 137978
17-03-17 22:54:58.758 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 22:54:58.758 -07 000000541 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:54:58.758 -07 000000541 INF: Y Motor: Position error before settling (table move) = -22 encoder counts (-0.011 mm)
17-03-17 22:54:58.758 -07 000000541 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 393 ms, distance = 0.844 mm, average velocity = 2.146 mm/sec
17-03-17 22:54:59.708 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:54:59.708 -07 000000478 INF: FPGA: Recv YRDPOS 137978
17-03-17 22:54:59.718 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:59.718 -07 000000541 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:54:59.738 -07 000000541 INF: Y Motor: After move to 67.382607, error = -0.010536, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:54:59.738 -07 000000541 INF: Y Motor: Position error after settling (table move) = -22 encoder counts (-0.011 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:54:59.738 -07 000000541 INF: Y Motor: Moved to 67.3721 after 1435 ms (table move)
17-03-17 22:54:59.738 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.170140 mm (DAC = 37167)
17-03-17 22:54:59.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:54:59.748 -07 000000547 INF: FPGA: Recv ZSGSRD 35781
17-03-17 22:54:59.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 22:54:59.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:54:59.748 -07 000000502 INF: FPGA: Recv ZSGSRD 35773
17-03-17 22:54:59.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:59.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:54:59.758 -07 000000409 INF: FPGA: Recv ZSGSRD 35771
17-03-17 22:54:59.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:59.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:54:59.768 -07 000000448 INF: FPGA: Recv ZSGSRD 35770
17-03-17 22:54:59.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:59.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:54:59.778 -07 000000478 INF: FPGA: Recv ZSGSRD 35777
17-03-17 22:54:59.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:59.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:54:59.788 -07 000000429 INF: FPGA: Recv ZSGSRD 35783
17-03-17 22:54:59.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:59.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:54:59.798 -07 000000475 INF: FPGA: Recv ZSGSRD 35778
17-03-17 22:54:59.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:59.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:54:59.808 -07 000000551 INF: FPGA: Recv ZSGSRD 35771
17-03-17 22:54:59.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:59.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:54:59.818 -07 000000415 INF: FPGA: Recv ZSGSRD 35768
17-03-17 22:54:59.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:59.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:54:59.828 -07 000000502 INF: FPGA: Recv ZSGSRD 35774
17-03-17 22:54:59.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:59.838 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:54:59.838 -07 000000409 INF: FPGA: Recv ZPIEZORD 31701
17-03-17 22:54:59.848 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:59.848 -07 000000610 INF: Z Motor: Piezo is near 47.7 V (nominally 0 to 100 V), expect near 56.7 V, since DAC is at 5.671 V. Piezo Error = -9.0 V.
17-03-17 22:54:59.848 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.1 um, Read 10 ADC samples: Avg = 35775 (-169.3 uncal um), Error = 0.9 uncal um, Median = 35774 (-169.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 35768 (-169.2 uncal um), Max = 35783 (-169.3 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 22:54:59.848 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35775, posNoise = 8, negNoise = 7
17-03-17 22:54:59.848 -07 000000610 INF: Z Motor: After move to -0.170140, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:54:59.848 -07 000000610 INF: Z Motor: Settle wait time = 1436 ms, measure time = 103 ms (allowed 150 ms), total time = 1539 ms
17-03-17 22:54:59.848 -07 000000610 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 22:54:59.898 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1594 ms
17-03-17 22:54:59.898 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:54:59.898 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.3720703125, Z-position -0.170149541382633. ----------
17-03-17 22:54:59.898 -07 000000610 INF: Cycle	69	Tile	10	Exposure Settings		A	463	G	223	T	223	C	463
17-03-17 22:54:59.898 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36991, sync = True, waitForSettling = True)
17-03-17 22:54:59.898 -07 000000610 INF: Z Motor: Moving to -0.169334 mm, started at -0.170150 mm, distance = 0.82 um
17-03-17 22:54:59.898 -07 000000610 INF: FPGA: Xmit ZDACW 36991\n [Z Motor]
17-03-17 22:54:59.898 -07 000000486 INF: FPGA: Recv ZDACW
17-03-17 22:54:59.908 -07 000000610 INF: FPGA: 'ZDACW 36991' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 22:54:59.908 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:54:59.908 -07 000000429 INF: FPGA: Recv ZDACR 36991
17-03-17 22:54:59.918 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:54:59.918 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:55:00.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:00.068 -07 000000627 INF: FPGA: Recv ZSGSRD 35652
17-03-17 22:55:00.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:55:00.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:00.078 -07 000000502 INF: FPGA: Recv ZSGSRD 35652
17-03-17 22:55:00.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:00.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:00.088 -07 000000448 INF: FPGA: Recv ZSGSRD 35651
17-03-17 22:55:00.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:00.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:00.098 -07 000000486 INF: FPGA: Recv ZSGSRD 35648
17-03-17 22:55:00.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:00.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:00.108 -07 000000429 INF: FPGA: Recv ZSGSRD 35659
17-03-17 22:55:00.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:00.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:00.118 -07 000000627 INF: FPGA: Recv ZSGSRD 35647
17-03-17 22:55:00.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:00.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:00.128 -07 000000502 INF: FPGA: Recv ZSGSRD 35647
17-03-17 22:55:00.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:00.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:00.138 -07 000000429 INF: FPGA: Recv ZSGSRD 35647
17-03-17 22:55:00.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:00.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:00.148 -07 000000382 INF: FPGA: Recv ZSGSRD 35648
17-03-17 22:55:00.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:55:00.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:00.158 -07 000000478 INF: FPGA: Recv ZSGSRD 35654
17-03-17 22:55:00.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:00.168 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:55:00.168 -07 000000448 INF: FPGA: Recv ZPIEZORD 31532
17-03-17 22:55:00.178 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:00.178 -07 000000610 INF: Z Motor: Piezo is near 47.4 V (nominally 0 to 100 V), expect near 56.4 V, since DAC is at 5.644 V. Piezo Error = -9.1 V.
17-03-17 22:55:00.178 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.3 um, Read 10 ADC samples: Avg = 35650 (-168.5 uncal um), Error = 0.9 uncal um, Median = 35650 (-168.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35647 (-168.5 uncal um), Max = 35659 (-168.5 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 22:55:00.178 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35650, posNoise = 9, negNoise = 3
17-03-17 22:55:00.178 -07 000000610 INF: Z Motor: After move to -0.169334, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:55:00.178 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 22:55:00.178 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:55:00.178 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:55:00.178 -07 000000429 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:55:00.178 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:55:00.178 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:55:00.178 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:55:00.178 -07 000000478 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:55:00.178 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:55:00.178 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:55:00.178 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:55:00.178 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:55:00.178 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:55:00.178 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 22:55:00.178 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:55:00.188 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:55:00.188 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:55:00.198 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-17 22:55:00.198 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 18 ms.
17-03-17 22:55:00.198 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-17 22:55:00.198 -07 000000478 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 22:55:00.198 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 463 463 223 223 37167 150\n [Camera]
17-03-17 22:55:00.398 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:55:00.868 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 655
17-03-17 22:55:00.868 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 655
17-03-17 22:55:00.868 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:55:00.868 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:55:00.868 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 1094749800, 0x0, 391868352) start.
17-03-17 22:55:00.868 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 655
17-03-17 22:55:00.868 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 655
17-03-17 22:55:00.868 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:55:00.868 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:55:00.868 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) start.
17-03-17 22:55:01.058 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37167 848
17-03-17 22:55:01.208 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP turning grn on 998
17-03-17 22:55:01.238 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 22:55:01.238 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-17 22:55:01.238 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:55:01.248 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:55:01.248 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 1094749800, 0x0, 391868352) end. Duration was 384 ms.
17-03-17 22:55:01.248 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 22:55:01.248 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:55:01.258 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-17 22:55:01.258 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:55:01.258 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 22:55:01.268 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 69, FrontChillerTemperature: 4.0344,
17-03-17 22:55:01.428 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1221
17-03-17 22:55:01.428 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1221
17-03-17 22:55:01.428 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:55:01.548 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1221
17-03-17 22:55:01.548 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1221
17-03-17 22:55:01.548 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:55:01.548 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:55:01.548 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 22:55:01.558 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:55:01.558 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 22:55:01.618 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP 1414
17-03-17 22:55:01.618 -07 000000551 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:55:01.618 -07 000000610 INF: FPGA: 'CAMDBLSNAP 463 463 223 223 37167 150' command took 2 ms to send, 1409 ms to get response, and 1420 ms overall
17-03-17 22:55:01.628 -07 000000610 INF: Skipping AutoFocus in Tile 11: adopting Best-Z from the cache: -0.169735
17-03-17 22:55:01.628 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.16973 mm
17-03-17 22:55:01.628 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:55:01.628 -07 000000627 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-17 22:55:01.628 -07 000000627 INF: Y Motor: Moving to 68.2126 mm, started at 67.3721 mm, delta = 0.8405 mm
17-03-17 22:55:01.628 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:55:01.628 -07 000000501 INF: Z Motor: Entering MoveAbsStepped (DAC = 37079, sync = True, waitForSettling = False)
17-03-17 22:55:01.628 -07 000000501 INF: Z Motor: Moving to -0.169737 mm, started at -0.169347 mm, distance = -0.39 um
17-03-17 22:55:01.628 -07 000000475 INF: FPGA: Recv YRDPOS 137978
17-03-17 22:55:01.638 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 22:55:01.638 -07 000000627 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:55:01.638 -07 000000627 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:55:01.638 -07 000000627 INF: Y Motor: Moving 1345 steps-22
17-03-17 22:55:01.638 -07 000000501 INF: FPGA: Xmit ZDACW 37079\n [Z Motor]
17-03-17 22:55:01.638 -07 000000623 INF: FPGA: Recv ZDACW
17-03-17 22:55:01.648 -07 000000501 INF: FPGA: 'ZDACW 37079' command took 1 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 22:55:01.648 -07 000000627 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:55:01.658 -07 000000501 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:55:01.658 -07 000000382 INF: FPGA: Recv ZDACR 37079
17-03-17 22:55:01.668 -07 000000501 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:55:01.668 -07 000000501 INF: Z Motor: MoveAbsStepped took 35 ms (did NOT wait for settling yet))
17-03-17 22:55:01.928 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 22:55:01.928 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-17 22:55:01.928 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:55:01.928 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 22:55:01.928 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 22:55:01.928 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:55:01.928 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:55:01.938 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 501 ms.
17-03-17 22:55:01.938 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:55:01.938 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 22:55:02.018 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:55:02.018 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 68. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1095, R2=1131, Total=2226. Warn if over 250 bubbles per interval.
17-03-17 22:55:02.018 -07 000000462 INF: FPGA: Recv YMVTILE
17-03-17 22:55:02.018 -07 000000627 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-17 22:55:02.068 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:55:02.068 -07 000000382 INF: FPGA: Recv YRDPOS 139684
17-03-17 22:55:02.078 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:02.078 -07 000000627 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:55:02.078 -07 000000627 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-17 22:55:02.078 -07 000000627 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.841 mm, average velocity = 2.166 mm/sec
17-03-17 22:55:03.028 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:55:03.028 -07 000000478 INF: FPGA: Recv YRDPOS 139685
17-03-17 22:55:03.038 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:55:03.038 -07 000000627 INF: Y Motor: Encoder = 139685 = motor step 109128.9 = 68.2056 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:55:03.058 -07 000000627 INF: Y Motor: After move to 68.212608, error = -0.007042, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:55:03.058 -07 000000627 INF: Y Motor: Position error after settling (table move) = -14 encoder counts (-0.007 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 22:55:03.058 -07 000000627 INF: Y Motor: Moved to 68.2056 after 1430 ms (table move)
17-03-17 22:55:03.058 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.169737 mm (DAC = 37079)
17-03-17 22:55:03.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:03.068 -07 000000618 INF: FPGA: Recv ZSGSRD 35712
17-03-17 22:55:03.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 22:55:03.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:03.068 -07 000000409 INF: FPGA: Recv ZSGSRD 35709
17-03-17 22:55:03.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:55:03.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:03.078 -07 000000593 INF: FPGA: Recv ZSGSRD 35717
17-03-17 22:55:03.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:55:03.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:03.088 -07 000000502 INF: FPGA: Recv ZSGSRD 35713
17-03-17 22:55:03.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:03.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:03.098 -07 000000429 INF: FPGA: Recv ZSGSRD 35713
17-03-17 22:55:03.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:03.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:03.108 -07 000000541 INF: FPGA: Recv ZSGSRD 35715
17-03-17 22:55:03.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:03.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:03.118 -07 000000409 INF: FPGA: Recv ZSGSRD 35709
17-03-17 22:55:03.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:03.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:03.128 -07 000000576 INF: FPGA: Recv ZSGSRD 35705
17-03-17 22:55:03.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:03.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:03.138 -07 000000623 INF: FPGA: Recv ZSGSRD 35713
17-03-17 22:55:03.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:03.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:03.148 -07 000000429 INF: FPGA: Recv ZSGSRD 35716
17-03-17 22:55:03.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:03.158 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:55:03.158 -07 000000382 INF: FPGA: Recv ZPIEZORD 31683
17-03-17 22:55:03.168 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:03.168 -07 000000610 INF: Z Motor: Piezo is near 47.7 V (nominally 0 to 100 V), expect near 56.6 V, since DAC is at 5.658 V. Piezo Error = -8.9 V.
17-03-17 22:55:03.168 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.7 um, Read 10 ADC samples: Avg = 35712 (-168.9 uncal um), Error = 0.9 uncal um, Median = 35713 (-168.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35705 (-168.8 uncal um), Max = 35717 (-168.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 22:55:03.168 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35712, posNoise = 5, negNoise = 7
17-03-17 22:55:03.168 -07 000000610 INF: Z Motor: After move to -0.169737, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:55:03.168 -07 000000610 INF: Z Motor: Settle wait time = 1433 ms, measure time = 102 ms (allowed 150 ms), total time = 1535 ms
17-03-17 22:55:03.168 -07 000000610 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 22:55:03.218 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1587 ms
17-03-17 22:55:03.218 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:55:03.218 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.20556640625, Z-position -0.169744816017702. ----------
17-03-17 22:55:03.218 -07 000000610 INF: Cycle	69	Tile	11	Exposure Settings		A	463	G	223	T	223	C	463
17-03-17 22:55:03.218 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36902, sync = True, waitForSettling = True)
17-03-17 22:55:03.218 -07 000000610 INF: Z Motor: Moving to -0.168927 mm, started at -0.169745 mm, distance = 0.82 um
17-03-17 22:55:03.218 -07 000000610 INF: FPGA: Xmit ZDACW 36902\n [Z Motor]
17-03-17 22:55:03.218 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 22:55:03.228 -07 000000610 INF: FPGA: 'ZDACW 36902' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 22:55:03.228 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:55:03.228 -07 000000448 INF: FPGA: Recv ZDACR 36902
17-03-17 22:55:03.238 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:03.248 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:55:03.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:03.398 -07 000000547 INF: FPGA: Recv ZSGSRD 35591
17-03-17 22:55:03.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:55:03.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:03.408 -07 000000593 INF: FPGA: Recv ZSGSRD 35586
17-03-17 22:55:03.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:03.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:03.418 -07 000000475 INF: FPGA: Recv ZSGSRD 35585
17-03-17 22:55:03.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:03.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:03.428 -07 000000478 INF: FPGA: Recv ZSGSRD 35587
17-03-17 22:55:03.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:03.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:03.438 -07 000000429 INF: FPGA: Recv ZSGSRD 35583
17-03-17 22:55:03.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:03.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:03.448 -07 000000502 INF: FPGA: Recv ZSGSRD 35589
17-03-17 22:55:03.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:03.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:03.458 -07 000000462 INF: FPGA: Recv ZSGSRD 35588
17-03-17 22:55:03.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:03.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:03.468 -07 000000551 INF: FPGA: Recv ZSGSRD 35589
17-03-17 22:55:03.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:03.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:03.478 -07 000000501 INF: FPGA: Recv ZSGSRD 35589
17-03-17 22:55:03.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:03.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:03.488 -07 000000482 INF: FPGA: Recv ZSGSRD 35580
17-03-17 22:55:03.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:03.498 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:55:03.498 -07 000000618 INF: FPGA: Recv ZPIEZORD 31505
17-03-17 22:55:03.508 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:03.508 -07 000000610 INF: Z Motor: Piezo is near 47.3 V (nominally 0 to 100 V), expect near 56.3 V, since DAC is at 5.631 V. Piezo Error = -9.0 V.
17-03-17 22:55:03.508 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.9 um, Read 10 ADC samples: Avg = 35587 (-168.1 uncal um), Error = 0.9 uncal um, Median = 35588 (-168.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35580 (-168.0 uncal um), Max = 35591 (-168.1 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 22:55:03.508 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35587, posNoise = 4, negNoise = 7
17-03-17 22:55:03.508 -07 000000610 INF: Z Motor: After move to -0.168927, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:55:03.508 -07 000000610 INF: Z Motor: MoveAbsStepped took 286 ms)
17-03-17 22:55:03.508 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:55:03.508 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:55:03.508 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:55:03.508 -07 000000415 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:55:03.508 -07 000000482 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:55:03.508 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:55:03.508 -07 000000448 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:55:03.508 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:55:03.508 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-17 22:55:03.508 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:55:03.508 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:55:03.508 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:55:03.518 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 22:55:03.518 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:55:03.518 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 22:55:03.518 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:55:03.528 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-17 22:55:03.528 -07 000000482 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 22:55:03.528 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-17 22:55:03.528 -07 000000448 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 22:55:03.528 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 463 463 223 223 37079 150\n [Camera]
17-03-17 22:55:03.728 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:55:04.198 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 655
17-03-17 22:55:04.198 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 655
17-03-17 22:55:04.198 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:55:04.198 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 655
17-03-17 22:55:04.198 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 655
17-03-17 22:55:04.198 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:55:04.198 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:55:04.198 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 1094749800, 0x0, 418435064) start.
17-03-17 22:55:04.198 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:55:04.198 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-17 22:55:04.388 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37079 848
17-03-17 22:55:04.538 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP turning grn on 998
17-03-17 22:55:04.568 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 373 ms.
17-03-17 22:55:04.568 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-17 22:55:04.568 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:55:04.578 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 1094749800, 0x0, 418435064) end. Duration was 376 ms.
17-03-17 22:55:04.578 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 22:55:04.578 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:55:04.578 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:55:04.578 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 22:55:04.578 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:55:04.588 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 22:55:04.758 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1221
17-03-17 22:55:04.758 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1221
17-03-17 22:55:04.758 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:55:04.758 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:55:04.868 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 1130172064, 0x0, 391868352) start.
17-03-17 22:55:04.868 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1221
17-03-17 22:55:04.868 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1221
17-03-17 22:55:04.868 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:55:04.878 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:55:04.878 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-17 22:55:04.958 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP 1417
17-03-17 22:55:04.958 -07 000000486 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:55:04.958 -07 000000610 INF: FPGA: 'CAMDBLSNAP 463 463 223 223 37079 150' command took 2 ms to send, 1411 ms to get response, and 1424 ms overall
17-03-17 22:55:04.958 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 22:55:04.958 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.20556640625, Z-Position -0.168941789499982. ------
17-03-17 22:55:04.968 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:55:04.968 -07 000000382 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.17565 mm
17-03-17 22:55:04.968 -07 000000382 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:55:04.968 -07 000000429 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:55:04.968 -07 000000478 INF: Z Motor: Entering MoveAbsStepped (DAC = 38371, sync = True, waitForSettling = False)
17-03-17 22:55:04.968 -07 000000478 INF: Z Motor: Moving to -0.175651 mm, started at -0.168942 mm, distance = -6.71 um
17-03-17 22:55:04.968 -07 000000502 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-17 22:55:04.968 -07 000000502 INF: Y Motor: Moving to 69.0426 mm, started at 68.2056 mm, delta = 0.8370 mm
17-03-17 22:55:04.978 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:04.978 -07 000000478 INF: FPGA: Xmit ZDACW 38371\n [Z Motor]
17-03-17 22:55:04.978 -07 000000541 INF: FPGA: Recv ZDACW
17-03-17 22:55:04.988 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:55:04.988 -07 000000478 INF: FPGA: 'ZDACW 38371' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 22:55:04.988 -07 000000627 INF: FPGA: Recv YRDPOS 139685
17-03-17 22:55:04.998 -07 000000462 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:55:04.998 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-17 22:55:04.998 -07 000000502 INF: Y Motor: Encoder = 139685 = motor step 109128.9 = 68.2056 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:55:04.998 -07 000000502 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:55:04.998 -07 000000502 INF: Y Motor: Moving 1339 steps-15
17-03-17 22:55:05.008 -07 000000478 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:55:05.008 -07 000000482 INF: FPGA: Recv ZDACR 38371
17-03-17 22:55:05.018 -07 000000502 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:55:05.018 -07 000000478 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:55:05.018 -07 000000478 INF: Z Motor: MoveAbsStepped took 44 ms (did NOT wait for settling yet))
17-03-17 22:55:05.198 -07 000000486 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:55:05.198 -07 000000462 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 22:55:05.248 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 373 ms.
17-03-17 22:55:05.248 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-17 22:55:05.248 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:55:05.248 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:55:05.258 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 1130172064, 0x0, 391868352) end. Duration was 384 ms.
17-03-17 22:55:05.258 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 493 ms.
17-03-17 22:55:05.258 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:55:05.258 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:55:05.258 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 497 ms.
17-03-17 22:55:05.258 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 22:55:05.388 -07 000000547 INF: FPGA: Recv YMVTILE
17-03-17 22:55:05.388 -07 000000502 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-17 22:55:05.438 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:55:05.438 -07 000000415 INF: FPGA: Recv YRDPOS 141368
17-03-17 22:55:05.448 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:05.448 -07 000000502 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:55:05.448 -07 000000502 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-17 22:55:05.448 -07 000000502 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.837 mm, average velocity = 2.124 mm/sec
17-03-17 22:55:06.398 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:55:06.398 -07 000000551 INF: FPGA: Recv YRDPOS 141368
17-03-17 22:55:06.408 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:06.408 -07 000000502 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:55:06.428 -07 000000502 INF: Y Motor: After move to 69.042610, error = -0.015266, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:55:06.428 -07 000000502 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:55:06.428 -07 000000502 INF: Y Motor: Moved to 69.0273 after 1459 ms (table move)
17-03-17 22:55:06.428 -07 000000382 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175651 mm (DAC = 38371)
17-03-17 22:55:06.428 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:06.438 -07 000000593 INF: FPGA: Recv ZSGSRD 36635
17-03-17 22:55:06.448 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:55:06.448 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:06.448 -07 000000618 INF: FPGA: Recv ZSGSRD 36632
17-03-17 22:55:06.458 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:06.458 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:06.458 -07 000000541 INF: FPGA: Recv ZSGSRD 36637
17-03-17 22:55:06.468 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:55:06.468 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:06.468 -07 000000486 INF: FPGA: Recv ZSGSRD 36633
17-03-17 22:55:06.478 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:06.478 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:06.478 -07 000000547 INF: FPGA: Recv ZSGSRD 36628
17-03-17 22:55:06.488 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:06.488 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:06.488 -07 000000502 INF: FPGA: Recv ZSGSRD 36633
17-03-17 22:55:06.498 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:06.498 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:06.498 -07 000000475 INF: FPGA: Recv ZSGSRD 36631
17-03-17 22:55:06.508 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:06.508 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:06.508 -07 000000593 INF: FPGA: Recv ZSGSRD 36626
17-03-17 22:55:06.518 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:06.518 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:06.518 -07 000000415 INF: FPGA: Recv ZSGSRD 36631
17-03-17 22:55:06.528 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:06.528 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:06.528 -07 000000547 INF: FPGA: Recv ZSGSRD 36639
17-03-17 22:55:06.538 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:06.538 -07 000000382 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:55:06.538 -07 000000623 INF: FPGA: Recv ZPIEZORD 32913
17-03-17 22:55:06.548 -07 000000382 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:06.548 -07 000000382 INF: Z Motor: Piezo is near 50.3 V (nominally 0 to 100 V), expect near 58.6 V, since DAC is at 5.855 V. Piezo Error = -8.2 V.
17-03-17 22:55:06.548 -07 000000382 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.7 um, Read 10 ADC samples: Avg = 36632 (-174.8 uncal um), Error = 0.9 uncal um, Median = 36632 (-174.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36626 (-174.7 uncal um), Max = 36639 (-174.8 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 22:55:06.548 -07 000000382 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36632, posNoise = 7, negNoise = 6
17-03-17 22:55:06.548 -07 000000382 INF: Z Motor: After move to -0.175651, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:55:06.548 -07 000000382 INF: Z Motor: Settle wait time = 1463 ms, measure time = 111 ms (allowed 150 ms), total time = 1574 ms
17-03-17 22:55:06.548 -07 000000382 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-17 22:55:06.588 -07 000000382 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1618 ms
17-03-17 22:55:06.588 -07 000000382 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:55:06.588 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:55:06.588 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:55:06.588 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:55:06.588 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:55:06.588 -07 000000547 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:55:06.588 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:55:06.588 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 22:55:06.588 -07 000000547 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:55:06.598 -07 000000547 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 22:55:06.598 -07 000000547 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:55:06.608 -07 000000547 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 22:55:06.608 -07 000000547 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 22:55:06.608 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:55:06.628 -07 000000541 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 69, FrontChillerTemperature: 4.012614,
17-03-17 22:55:06.658 -07 000000627 INF: FPGA: Recv @CAMSNAP turning led on 41
17-03-17 22:55:06.858 -07 000000448 INF: FPGA: Recv @CAMSNAP img rdy 241
17-03-17 22:55:06.858 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 241
17-03-17 22:55:06.858 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:55:06.858 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 639799168, 0x0, 559484976) start.
17-03-17 22:55:06.888 -07 000000502 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:55:06.898 -07 000000593 INF: FPGA: Recv CAMSNAP
17-03-17 22:55:06.898 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 285 ms overall
17-03-17 22:55:06.978 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 639799168, 0x0, 559484976) end. Duration was 125 ms.
17-03-17 22:55:06.978 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:55:06.988 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:55:06.988 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-17 22:55:06.998 -07 000000448 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:55:06.998 -07 000000541 INF: Autofocus start
17-03-17 22:55:06.998 -07 000000541 INF: MeasureProfile start
17-03-17 22:55:06.998 -07 000000478 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:55:07.008 -07 000000448 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 22:55:07.008 -07 000000448 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:55:07.008 -07 000000541 INF: MeasureProfile done
17-03-17 22:55:07.008 -07 000000541 INF: X=-32  Z correction [um]=-0.2344
17-03-17 22:55:07.008 -07 000000541 INF: Autofocus finished
17-03-17 22:55:07.018 -07 000000478 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:55:07.018 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 68. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1095, R2=1131, Total=2226. Warn if over 250 bubbles per interval.
17-03-17 22:55:07.208 -07 000000415 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:55:07.208 -07 000000448 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:55:07.208 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02734375, Z-position -0.175655091188122. ----------
17-03-17 22:55:07.208 -07 000000610 INF: Cycle	69	Tile	12	Exposure Settings		A	463	G	223	T	223	C	463
17-03-17 22:55:07.218 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36832, sync = True, waitForSettling = True)
17-03-17 22:55:07.218 -07 000000610 INF: Z Motor: Moving to -0.168606 mm, started at -0.175655 mm, distance = 7.05 um
17-03-17 22:55:07.218 -07 000000610 INF: FPGA: Xmit ZDACW 36832\n [Z Motor]
17-03-17 22:55:07.218 -07 000000429 INF: FPGA: Recv ZDACW
17-03-17 22:55:07.228 -07 000000610 INF: FPGA: 'ZDACW 36832' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:55:07.228 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:55:07.228 -07 000000576 INF: FPGA: Recv ZDACR 36832
17-03-17 22:55:07.238 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 22:55:07.238 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:55:07.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:07.388 -07 000000486 INF: FPGA: Recv ZSGSRD 35536
17-03-17 22:55:07.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:55:07.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:07.398 -07 000000475 INF: FPGA: Recv ZSGSRD 35534
17-03-17 22:55:07.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:07.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:07.408 -07 000000448 INF: FPGA: Recv ZSGSRD 35535
17-03-17 22:55:07.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:07.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:07.418 -07 000000547 INF: FPGA: Recv ZSGSRD 35537
17-03-17 22:55:07.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:07.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:07.428 -07 000000576 INF: FPGA: Recv ZSGSRD 35545
17-03-17 22:55:07.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:07.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:07.438 -07 000000415 INF: FPGA: Recv ZSGSRD 35536
17-03-17 22:55:07.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:07.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:07.448 -07 000000541 INF: FPGA: Recv ZSGSRD 35535
17-03-17 22:55:07.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:07.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:07.458 -07 000000482 INF: FPGA: Recv ZSGSRD 35540
17-03-17 22:55:07.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:07.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:07.468 -07 000000429 INF: FPGA: Recv ZSGSRD 35529
17-03-17 22:55:07.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:07.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:07.478 -07 000000593 INF: FPGA: Recv ZSGSRD 35539
17-03-17 22:55:07.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:07.488 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:55:07.488 -07 000000551 INF: FPGA: Recv ZPIEZORD 31451
17-03-17 22:55:07.498 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:07.498 -07 000000610 INF: Z Motor: Piezo is near 47.2 V (nominally 0 to 100 V), expect near 56.2 V, since DAC is at 5.620 V. Piezo Error = -9.0 V.
17-03-17 22:55:07.498 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.6 um, Read 10 ADC samples: Avg = 35537 (-167.7 uncal um), Error = 0.9 uncal um, Median = 35536 (-167.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 35529 (-167.7 uncal um), Max = 35545 (-167.8 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 22:55:07.498 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35537, posNoise = 8, negNoise = 8
17-03-17 22:55:07.498 -07 000000610 INF: Z Motor: After move to -0.168606, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:55:07.498 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 22:55:07.498 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:55:07.498 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:55:07.498 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:55:07.498 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:55:07.498 -07 000000482 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:55:07.498 -07 000000593 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:55:07.498 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:55:07.498 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:55:07.498 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:55:07.498 -07 000000623 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:55:07.498 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:55:07.498 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:55:07.508 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 22:55:07.508 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:55:07.508 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 22:55:07.508 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:55:07.518 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 22:55:07.518 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 22:55:07.518 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 22:55:07.518 -07 000000593 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 22:55:07.518 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 463 463 223 223 37009 150\n [Camera]
17-03-17 22:55:07.718 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:55:08.178 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 655
17-03-17 22:55:08.178 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 655
17-03-17 22:55:08.178 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:55:08.178 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 655
17-03-17 22:55:08.178 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 655
17-03-17 22:55:08.188 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:55:08.188 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:55:08.188 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 2151893096, 0x0, 391868352) start.
17-03-17 22:55:08.188 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:55:08.188 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 2187315360, 0x0, 418435064) start.
17-03-17 22:55:08.368 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37009 848
17-03-17 22:55:08.518 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP turning grn on 998
17-03-17 22:55:08.568 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 2151893096, 0x0, 391868352) end. Duration was 386 ms.
17-03-17 22:55:08.568 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 22:55:08.568 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:55:08.578 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:55:08.578 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 22:55:08.578 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 2187315360, 0x0, 418435064) end. Duration was 389 ms.
17-03-17 22:55:08.578 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 22:55:08.578 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:55:08.588 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 22:55:08.588 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-17 22:55:08.748 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1224
17-03-17 22:55:08.748 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1224
17-03-17 22:55:08.748 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:55:08.748 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1224
17-03-17 22:55:08.748 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1224
17-03-17 22:55:08.748 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:55:08.748 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:55:08.748 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 1165594328, 0x0, 418435064) start.
17-03-17 22:55:08.758 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:55:08.758 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1094749800, 0x0, 391868352) start.
17-03-17 22:55:08.938 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP 1413
17-03-17 22:55:08.938 -07 000000475 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:55:08.938 -07 000000610 INF: FPGA: 'CAMDBLSNAP 463 463 223 223 37009 150' command took 2 ms to send, 1413 ms to get response, and 1420 ms overall
17-03-17 22:55:08.938 -07 000000610 INF: Skipping AutoFocus in Tile 13: adopting Best-Z from the cache: -0.168985
17-03-17 22:55:08.938 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.16899 mm
17-03-17 22:55:08.938 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:55:08.938 -07 000000623 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-17 22:55:08.938 -07 000000623 INF: Y Motor: Moving to 69.8726 mm, started at 69.0273 mm, delta = 0.8453 mm
17-03-17 22:55:08.938 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:55:08.938 -07 000000593 INF: Z Motor: Entering MoveAbsStepped (DAC = 36915, sync = True, waitForSettling = False)
17-03-17 22:55:08.938 -07 000000593 INF: Z Motor: Moving to -0.168986 mm, started at -0.168621 mm, distance = -0.37 um
17-03-17 22:55:08.948 -07 000000593 INF: FPGA: Xmit ZDACW 36915\n [Z Motor]
17-03-17 22:55:08.948 -07 000000475 INF: FPGA: Recv YRDPOS 141369
17-03-17 22:55:08.948 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 22:55:08.948 -07 000000623 INF: Y Motor: Encoder = 141369 = motor step 110444.5 = 69.0278 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:55:08.948 -07 000000618 INF: FPGA: Recv ZDACW
17-03-17 22:55:08.948 -07 000000623 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:55:08.948 -07 000000623 INF: Y Motor: Moving 1352 steps-31
17-03-17 22:55:08.958 -07 000000593 INF: FPGA: 'ZDACW 36915' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:55:08.958 -07 000000623 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:55:08.968 -07 000000593 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:55:08.968 -07 000000547 INF: FPGA: Recv ZDACR 36915
17-03-17 22:55:08.978 -07 000000593 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:55:08.978 -07 000000593 INF: Z Motor: MoveAbsStepped took 31 ms (did NOT wait for settling yet))
17-03-17 22:55:09.138 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1094749800, 0x0, 391868352) end. Duration was 378 ms.
17-03-17 22:55:09.138 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-17 22:55:09.138 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:55:09.138 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 1165594328, 0x0, 418435064) end. Duration was 383 ms.
17-03-17 22:55:09.138 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-17 22:55:09.138 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:55:09.138 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:55:09.138 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 22:55:09.148 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 22:55:09.148 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 22:55:09.328 -07 000000551 INF: FPGA: Recv YMVTILE
17-03-17 22:55:09.328 -07 000000623 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 380 ms overall
17-03-17 22:55:09.368 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:55:09.378 -07 000000462 INF: FPGA: Recv YRDPOS 143080
17-03-17 22:55:09.378 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 22:55:09.378 -07 000000623 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:55:09.378 -07 000000623 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-17 22:55:09.378 -07 000000623 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 380 ms, distance = 0.845 mm, average velocity = 2.224 mm/sec
17-03-17 22:55:10.328 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:55:10.328 -07 000000415 INF: FPGA: Recv YRDPOS 143080
17-03-17 22:55:10.338 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:55:10.338 -07 000000623 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:55:10.358 -07 000000623 INF: Y Motor: After move to 69.872612, error = -0.009331, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:55:10.358 -07 000000623 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:55:10.358 -07 000000623 INF: Y Motor: Moved to 69.8633 after 1417 ms (table move)
17-03-17 22:55:10.358 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.168986 mm (DAC = 36915)
17-03-17 22:55:10.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:10.368 -07 000000593 INF: FPGA: Recv ZSGSRD 35597
17-03-17 22:55:10.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 22:55:10.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:10.368 -07 000000541 INF: FPGA: Recv ZSGSRD 35593
17-03-17 22:55:10.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:55:10.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:10.378 -07 000000409 INF: FPGA: Recv ZSGSRD 35602
17-03-17 22:55:10.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:10.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:10.388 -07 000000415 INF: FPGA: Recv ZSGSRD 35596
17-03-17 22:55:10.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:10.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:10.398 -07 000000576 INF: FPGA: Recv ZSGSRD 35603
17-03-17 22:55:10.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:10.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:10.408 -07 000000501 INF: FPGA: Recv ZSGSRD 35600
17-03-17 22:55:10.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:10.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:10.418 -07 000000478 INF: FPGA: Recv ZSGSRD 35593
17-03-17 22:55:10.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:10.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:10.428 -07 000000486 INF: FPGA: Recv ZSGSRD 35589
17-03-17 22:55:10.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:10.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:10.438 -07 000000627 INF: FPGA: Recv ZSGSRD 35589
17-03-17 22:55:10.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:10.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:10.448 -07 000000482 INF: FPGA: Recv ZSGSRD 35594
17-03-17 22:55:10.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:10.458 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:55:10.458 -07 000000462 INF: FPGA: Recv ZPIEZORD 31555
17-03-17 22:55:10.468 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:10.468 -07 000000610 INF: Z Motor: Piezo is near 47.4 V (nominally 0 to 100 V), expect near 56.3 V, since DAC is at 5.633 V. Piezo Error = -8.9 V.
17-03-17 22:55:10.468 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.0 um, Read 10 ADC samples: Avg = 35596 (-168.1 uncal um), Error = 0.9 uncal um, Median = 35595 (-168.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 35589 (-168.1 uncal um), Max = 35603 (-168.2 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 22:55:10.468 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35596, posNoise = 7, negNoise = 7
17-03-17 22:55:10.468 -07 000000610 INF: Z Motor: After move to -0.168986, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:55:10.468 -07 000000610 INF: Z Motor: Settle wait time = 1419 ms, measure time = 102 ms (allowed 150 ms), total time = 1521 ms
17-03-17 22:55:10.468 -07 000000610 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 22:55:10.518 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1573 ms
17-03-17 22:55:10.518 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:55:10.518 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86328125, Z-position -0.168999607409258. ----------
17-03-17 22:55:10.518 -07 000000610 INF: Cycle	69	Tile	13	Exposure Settings		A	463	G	223	T	223	C	463
17-03-17 22:55:10.518 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36738, sync = True, waitForSettling = True)
17-03-17 22:55:10.518 -07 000000610 INF: Z Motor: Moving to -0.168176 mm, started at -0.169000 mm, distance = 0.82 um
17-03-17 22:55:10.518 -07 000000610 INF: FPGA: Xmit ZDACW 36738\n [Z Motor]
17-03-17 22:55:10.518 -07 000000478 INF: FPGA: Recv ZDACW
17-03-17 22:55:10.528 -07 000000610 INF: FPGA: 'ZDACW 36738' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:55:10.528 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:55:10.528 -07 000000501 INF: FPGA: Recv ZDACR 36738
17-03-17 22:55:10.538 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:10.538 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:55:10.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:10.688 -07 000000593 INF: FPGA: Recv ZSGSRD 35472
17-03-17 22:55:10.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:55:10.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:10.698 -07 000000618 INF: FPGA: Recv ZSGSRD 35475
17-03-17 22:55:10.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:10.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:10.708 -07 000000429 INF: FPGA: Recv ZSGSRD 35476
17-03-17 22:55:10.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:10.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:10.718 -07 000000627 INF: FPGA: Recv ZSGSRD 35470
17-03-17 22:55:10.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:10.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:10.728 -07 000000551 INF: FPGA: Recv ZSGSRD 35468
17-03-17 22:55:10.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:10.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:10.738 -07 000000448 INF: FPGA: Recv ZSGSRD 35470
17-03-17 22:55:10.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:10.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:10.748 -07 000000475 INF: FPGA: Recv ZSGSRD 35471
17-03-17 22:55:10.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:10.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:10.758 -07 000000482 INF: FPGA: Recv ZSGSRD 35464
17-03-17 22:55:10.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:10.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:10.768 -07 000000593 INF: FPGA: Recv ZSGSRD 35469
17-03-17 22:55:10.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:10.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:10.778 -07 000000478 INF: FPGA: Recv ZSGSRD 35471
17-03-17 22:55:10.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:10.788 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:55:10.788 -07 000000448 INF: FPGA: Recv ZPIEZORD 31365
17-03-17 22:55:10.798 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:10.798 -07 000000610 INF: Z Motor: Piezo is near 47.0 V (nominally 0 to 100 V), expect near 56.1 V, since DAC is at 5.606 V. Piezo Error = -9.1 V.
17-03-17 22:55:10.798 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.2 um, Read 10 ADC samples: Avg = 35471 (-167.3 uncal um), Error = 0.8 uncal um, Median = 35470 (-167.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35464 (-167.3 uncal um), Max = 35476 (-167.4 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 22:55:10.798 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35471, posNoise = 5, negNoise = 7
17-03-17 22:55:10.798 -07 000000610 INF: Z Motor: After move to -0.168176, error = -0.000021, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:55:10.798 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-17 22:55:10.798 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:55:10.798 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:55:10.798 -07 000000478 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:55:10.798 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:55:10.798 -07 000000547 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:55:10.798 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:55:10.798 -07 000000593 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:55:10.798 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:55:10.798 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:55:10.798 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:55:10.798 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:55:10.798 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:55:10.808 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:55:10.808 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:55:10.808 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 22:55:10.808 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:55:10.818 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 22:55:10.818 -07 000000547 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 22:55:10.818 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 22:55:10.818 -07 000000593 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 22:55:10.818 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 463 463 223 223 36915 150\n [Camera]
17-03-17 22:55:11.018 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:55:11.488 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 655
17-03-17 22:55:11.488 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 655
17-03-17 22:55:11.488 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:55:11.488 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:55:11.488 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 22:55:11.488 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 655
17-03-17 22:55:11.488 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 655
17-03-17 22:55:11.488 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:55:11.488 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:55:11.488 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 22:55:11.678 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36915 848
17-03-17 22:55:11.828 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP turning grn on 998
17-03-17 22:55:11.868 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 22:55:11.868 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 22:55:11.868 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:55:11.868 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 22:55:11.868 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 22:55:11.868 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:55:11.868 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:55:11.868 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 22:55:11.868 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:55:11.878 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 22:55:11.988 -07 000000627 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 69, FrontChillerTemperature: 4.023489,
17-03-17 22:55:12.018 -07 000000409 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:55:12.018 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 68. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1095, R2=1131, Total=2226. Warn if over 250 bubbles per interval.
17-03-17 22:55:12.048 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1221
17-03-17 22:55:12.048 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1221
17-03-17 22:55:12.048 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:55:12.048 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:55:12.048 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-17 22:55:12.058 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1221
17-03-17 22:55:12.058 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1221
17-03-17 22:55:12.058 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:55:12.058 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:55:12.058 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 22:55:12.238 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP 1414
17-03-17 22:55:12.248 -07 000000415 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:55:12.248 -07 000000610 INF: FPGA: 'CAMDBLSNAP 463 463 223 223 36915 150' command took 2 ms to send, 1412 ms to get response, and 1423 ms overall
17-03-17 22:55:12.248 -07 000000610 INF: Skipping AutoFocus in Tile 14: adopting Best-Z from the cache: -0.168586
17-03-17 22:55:12.248 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.16859 mm
17-03-17 22:55:12.248 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:55:12.378 -07 000000462 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-17 22:55:12.378 -07 000000462 INF: Y Motor: Moving to 70.7026 mm, started at 69.8633 mm, delta = 0.8393 mm
17-03-17 22:55:12.378 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:55:12.378 -07 000000627 INF: Z Motor: Entering MoveAbsStepped (DAC = 36828, sync = True, waitForSettling = False)
17-03-17 22:55:12.378 -07 000000627 INF: Z Motor: Moving to -0.168588 mm, started at -0.168197 mm, distance = -0.39 um
17-03-17 22:55:12.378 -07 000000382 INF: FPGA: Recv YRDPOS 143080
17-03-17 22:55:12.388 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:55:12.388 -07 000000462 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:55:12.388 -07 000000462 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:55:12.388 -07 000000462 INF: Y Motor: Moving 1343 steps-19
17-03-17 22:55:12.398 -07 000000627 INF: FPGA: Xmit ZDACW 36828\n [Z Motor]
17-03-17 22:55:12.398 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 22:55:12.408 -07 000000462 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:55:12.408 -07 000000627 INF: FPGA: 'ZDACW 36828' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 22:55:12.428 -07 000000627 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:55:12.428 -07 000000501 INF: FPGA: Recv ZDACR 36828
17-03-17 22:55:12.438 -07 000000627 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:55:12.438 -07 000000627 INF: Z Motor: MoveAbsStepped took 56 ms (did NOT wait for settling yet))
17-03-17 22:55:12.448 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 390 ms.
17-03-17 22:55:12.448 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 22:55:12.448 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:55:12.448 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 388 ms.
17-03-17 22:55:12.448 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 22:55:12.448 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:55:12.448 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:55:12.448 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 22:55:12.448 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:55:12.458 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 22:55:12.778 -07 000000482 INF: FPGA: Recv YMVTILE
17-03-17 22:55:12.778 -07 000000462 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 22:55:12.828 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:55:12.828 -07 000000415 INF: FPGA: Recv YRDPOS 144770
17-03-17 22:55:12.838 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:12.838 -07 000000462 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:55:12.838 -07 000000462 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-17 22:55:12.838 -07 000000462 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.839 mm, average velocity = 2.109 mm/sec
17-03-17 22:55:13.788 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:55:13.788 -07 000000382 INF: FPGA: Recv YRDPOS 144770
17-03-17 22:55:13.798 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:55:13.798 -07 000000462 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:55:13.818 -07 000000462 INF: Y Motor: After move to 70.702606, error = -0.014130, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:55:13.818 -07 000000462 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:55:13.818 -07 000000462 INF: Y Motor: Moved to 70.6885 after 1441 ms (table move)
17-03-17 22:55:13.818 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.168588 mm (DAC = 36828)
17-03-17 22:55:13.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:13.828 -07 000000486 INF: FPGA: Recv ZSGSRD 35533
17-03-17 22:55:13.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 22:55:13.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:13.828 -07 000000415 INF: FPGA: Recv ZSGSRD 35532
17-03-17 22:55:13.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:13.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:13.838 -07 000000429 INF: FPGA: Recv ZSGSRD 35534
17-03-17 22:55:13.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:13.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:13.848 -07 000000475 INF: FPGA: Recv ZSGSRD 35533
17-03-17 22:55:13.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:13.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:13.858 -07 000000478 INF: FPGA: Recv ZSGSRD 35539
17-03-17 22:55:13.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:13.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:13.868 -07 000000501 INF: FPGA: Recv ZSGSRD 35529
17-03-17 22:55:13.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:13.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:13.878 -07 000000618 INF: FPGA: Recv ZSGSRD 35533
17-03-17 22:55:13.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:13.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:13.888 -07 000000502 INF: FPGA: Recv ZSGSRD 35530
17-03-17 22:55:13.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:13.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:13.898 -07 000000448 INF: FPGA: Recv ZSGSRD 35531
17-03-17 22:55:13.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:13.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:13.908 -07 000000415 INF: FPGA: Recv ZSGSRD 35532
17-03-17 22:55:13.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:13.918 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:55:13.918 -07 000000576 INF: FPGA: Recv ZPIEZORD 31451
17-03-17 22:55:13.928 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:13.928 -07 000000610 INF: Z Motor: Piezo is near 47.2 V (nominally 0 to 100 V), expect near 56.2 V, since DAC is at 5.620 V. Piezo Error = -9.0 V.
17-03-17 22:55:13.928 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.6 um, Read 10 ADC samples: Avg = 35533 (-167.7 uncal um), Error = 0.9 uncal um, Median = 35532 (-167.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35529 (-167.7 uncal um), Max = 35539 (-167.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 22:55:13.928 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35533, posNoise = 6, negNoise = 4
17-03-17 22:55:13.928 -07 000000610 INF: Z Motor: After move to -0.168588, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:55:13.928 -07 000000610 INF: Z Motor: Settle wait time = 1443 ms, measure time = 104 ms (allowed 150 ms), total time = 1547 ms
17-03-17 22:55:13.928 -07 000000610 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 22:55:13.978 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1724 ms
17-03-17 22:55:13.978 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:55:13.978 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.6884765625, Z-position -0.168594882044327. ----------
17-03-17 22:55:13.978 -07 000000610 INF: Cycle	69	Tile	14	Exposure Settings		A	463	G	223	T	223	C	463
17-03-17 22:55:13.978 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36651, sync = True, waitForSettling = True)
17-03-17 22:55:13.978 -07 000000610 INF: Z Motor: Moving to -0.167778 mm, started at -0.168595 mm, distance = 0.82 um
17-03-17 22:55:13.978 -07 000000610 INF: FPGA: Xmit ZDACW 36651\n [Z Motor]
17-03-17 22:55:13.978 -07 000000478 INF: FPGA: Recv ZDACW
17-03-17 22:55:13.988 -07 000000610 INF: FPGA: 'ZDACW 36651' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 22:55:13.988 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:55:13.988 -07 000000462 INF: FPGA: Recv ZDACR 36651
17-03-17 22:55:13.998 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:13.998 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:55:14.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:14.148 -07 000000382 INF: FPGA: Recv ZSGSRD 35408
17-03-17 22:55:14.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:55:14.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:14.158 -07 000000502 INF: FPGA: Recv ZSGSRD 35412
17-03-17 22:55:14.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:14.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:14.168 -07 000000409 INF: FPGA: Recv ZSGSRD 35410
17-03-17 22:55:14.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:14.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:14.178 -07 000000415 INF: FPGA: Recv ZSGSRD 35411
17-03-17 22:55:14.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:14.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:14.188 -07 000000576 INF: FPGA: Recv ZSGSRD 35405
17-03-17 22:55:14.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:14.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:14.198 -07 000000482 INF: FPGA: Recv ZSGSRD 35406
17-03-17 22:55:14.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:14.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:14.208 -07 000000429 INF: FPGA: Recv ZSGSRD 35407
17-03-17 22:55:14.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:14.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:14.218 -07 000000462 INF: FPGA: Recv ZSGSRD 35406
17-03-17 22:55:14.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:55:14.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:14.228 -07 000000448 INF: FPGA: Recv ZSGSRD 35405
17-03-17 22:55:14.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:14.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:14.238 -07 000000618 INF: FPGA: Recv ZSGSRD 35406
17-03-17 22:55:14.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:14.248 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:55:14.248 -07 000000475 INF: FPGA: Recv ZPIEZORD 31297
17-03-17 22:55:14.258 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:14.258 -07 000000610 INF: Z Motor: Piezo is near 46.9 V (nominally 0 to 100 V), expect near 55.9 V, since DAC is at 5.593 V. Piezo Error = -9.1 V.
17-03-17 22:55:14.258 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.8 um, Read 10 ADC samples: Avg = 35408 (-166.9 uncal um), Error = 0.9 uncal um, Median = 35406 (-166.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 35405 (-166.9 uncal um), Max = 35412 (-166.9 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 22:55:14.258 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35408, posNoise = 4, negNoise = 3
17-03-17 22:55:14.258 -07 000000610 INF: Z Motor: After move to -0.167778, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:55:14.258 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 22:55:14.258 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:55:14.258 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:55:14.258 -07 000000541 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:55:14.258 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:55:14.258 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:55:14.258 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:55:14.258 -07 000000429 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:55:14.258 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:55:14.258 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:55:14.258 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:55:14.258 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:55:14.258 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:55:14.258 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 22:55:14.258 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:55:14.268 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:55:14.268 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:55:14.268 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 22:55:14.268 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 22:55:14.268 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 22:55:14.268 -07 000000429 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 22:55:14.278 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 463 463 223 223 36828 150\n [Camera]
17-03-17 22:55:14.478 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:55:14.938 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 655
17-03-17 22:55:14.938 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 655
17-03-17 22:55:14.938 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:55:14.948 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 655
17-03-17 22:55:14.948 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 655
17-03-17 22:55:14.948 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:55:14.948 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:55:14.948 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 22:55:14.948 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:55:14.948 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 22:55:15.128 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36828 848
17-03-17 22:55:15.278 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP turning grn on 998
17-03-17 22:55:15.318 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 371 ms.
17-03-17 22:55:15.318 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-17 22:55:15.318 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:55:15.318 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 375 ms.
17-03-17 22:55:15.318 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 375 ms.
17-03-17 22:55:15.318 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:55:15.328 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:55:15.328 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 22:55:15.328 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 22:55:15.338 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 22:55:15.508 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1221
17-03-17 22:55:15.508 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1221
17-03-17 22:55:15.508 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:55:15.508 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1221
17-03-17 22:55:15.508 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1221
17-03-17 22:55:15.508 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:55:15.508 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:55:15.508 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-17 22:55:15.518 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:55:15.518 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 22:55:15.698 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP 1414
17-03-17 22:55:15.698 -07 000000462 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:55:15.698 -07 000000610 INF: FPGA: 'CAMDBLSNAP 463 463 223 223 36828 150' command took 2 ms to send, 1414 ms to get response, and 1420 ms overall
17-03-17 22:55:15.698 -07 000000610 INF: Skipping AutoFocus in Tile 15: adopting Best-Z from the cache: -0.167998
17-03-17 22:55:15.698 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.16800 mm
17-03-17 22:55:15.698 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:55:15.708 -07 000000478 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-17 22:55:15.708 -07 000000478 INF: Y Motor: Moving to 71.5326 mm, started at 70.6885 mm, delta = 0.8441 mm
17-03-17 22:55:15.708 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:55:15.708 -07 000000618 INF: Z Motor: Entering MoveAbsStepped (DAC = 36699, sync = True, waitForSettling = False)
17-03-17 22:55:15.708 -07 000000618 INF: Z Motor: Moving to -0.167997 mm, started at -0.167792 mm, distance = -0.21 um
17-03-17 22:55:15.708 -07 000000547 INF: FPGA: Recv YRDPOS 144770
17-03-17 22:55:15.718 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:15.718 -07 000000478 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:55:15.718 -07 000000618 INF: FPGA: Xmit ZDACW 36699\n [Z Motor]
17-03-17 22:55:15.718 -07 000000478 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:55:15.718 -07 000000478 INF: Y Motor: Moving 1351 steps-29
17-03-17 22:55:15.718 -07 000000593 INF: FPGA: Recv ZDACW
17-03-17 22:55:15.728 -07 000000478 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:55:15.728 -07 000000618 INF: FPGA: 'ZDACW 36699' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-17 22:55:15.738 -07 000000618 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:55:15.738 -07 000000409 INF: FPGA: Recv ZDACR 36699
17-03-17 22:55:15.748 -07 000000618 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:55:15.748 -07 000000618 INF: Z Motor: MoveAbsStepped took 37 ms (did NOT wait for settling yet))
17-03-17 22:55:15.888 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 371 ms.
17-03-17 22:55:15.888 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-17 22:55:15.888 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:55:15.888 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 378 ms.
17-03-17 22:55:15.888 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-17 22:55:15.888 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:55:15.898 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 22:55:15.898 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 22:55:15.898 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 22:55:15.908 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 22:55:16.098 -07 000000415 INF: FPGA: Recv YMVTILE
17-03-17 22:55:16.098 -07 000000478 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-17 22:55:16.148 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:55:16.148 -07 000000448 INF: FPGA: Recv YRDPOS 146471
17-03-17 22:55:16.158 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:55:16.158 -07 000000478 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:55:16.158 -07 000000478 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 22:55:16.158 -07 000000478 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.844 mm, average velocity = 2.181 mm/sec
17-03-17 22:55:17.018 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:55:17.018 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 68. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1095, R2=1131, Total=2226. Warn if over 250 bubbles per interval.
17-03-17 22:55:17.108 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:55:17.108 -07 000000462 INF: FPGA: Recv YRDPOS 146471
17-03-17 22:55:17.118 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:55:17.118 -07 000000478 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:55:17.138 -07 000000478 INF: Y Motor: After move to 71.532608, error = -0.013565, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:55:17.138 -07 000000478 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:55:17.138 -07 000000478 INF: Y Motor: Moved to 71.5190 after 1433 ms (table move)
17-03-17 22:55:17.138 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.167997 mm (DAC = 36699)
17-03-17 22:55:17.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:17.148 -07 000000415 INF: FPGA: Recv ZSGSRD 35442
17-03-17 22:55:17.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 4 ms to get response, and 6 ms overall
17-03-17 22:55:17.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:17.148 -07 000000627 INF: FPGA: Recv ZSGSRD 35440
17-03-17 22:55:17.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 22:55:17.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:17.158 -07 000000501 INF: FPGA: Recv ZSGSRD 35444
17-03-17 22:55:17.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:17.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:17.168 -07 000000618 INF: FPGA: Recv ZSGSRD 35445
17-03-17 22:55:17.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:17.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:17.178 -07 000000482 INF: FPGA: Recv ZSGSRD 35450
17-03-17 22:55:17.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:17.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:17.188 -07 000000409 INF: FPGA: Recv ZSGSRD 35441
17-03-17 22:55:17.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:17.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:17.198 -07 000000551 INF: FPGA: Recv ZSGSRD 35443
17-03-17 22:55:17.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:17.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:17.208 -07 000000478 INF: FPGA: Recv ZSGSRD 35445
17-03-17 22:55:17.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:17.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:17.218 -07 000000448 INF: FPGA: Recv ZSGSRD 35435
17-03-17 22:55:17.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:17.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:17.228 -07 000000486 INF: FPGA: Recv ZSGSRD 35441
17-03-17 22:55:17.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:17.238 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:55:17.238 -07 000000415 INF: FPGA: Recv ZPIEZORD 31356
17-03-17 22:55:17.248 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:55:17.248 -07 000000610 INF: Z Motor: Piezo is near 47.0 V (nominally 0 to 100 V), expect near 56.0 V, since DAC is at 5.600 V. Piezo Error = -9.0 V.
17-03-17 22:55:17.248 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.0 um, Read 10 ADC samples: Avg = 35443 (-167.1 uncal um), Error = 0.9 uncal um, Median = 35442 (-167.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 35435 (-167.1 uncal um), Max = 35450 (-167.2 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 22:55:17.248 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35443, posNoise = 7, negNoise = 8
17-03-17 22:55:17.248 -07 000000610 INF: Z Motor: After move to -0.167997, error = -0.000019, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:55:17.248 -07 000000610 INF: Z Motor: Settle wait time = 1435 ms, measure time = 103 ms (allowed 150 ms), total time = 1538 ms
17-03-17 22:55:17.248 -07 000000610 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 22:55:17.298 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1590 ms
17-03-17 22:55:17.298 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:55:17.298 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.51904296875, Z-position -0.168016702951569. ----------
17-03-17 22:55:17.298 -07 000000610 INF: Cycle	69	Tile	15	Exposure Settings		A	463	G	223	T	223	C	463
17-03-17 22:55:17.298 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36522, sync = True, waitForSettling = True)
17-03-17 22:55:17.298 -07 000000610 INF: Z Motor: Moving to -0.167187 mm, started at -0.168017 mm, distance = 0.83 um
17-03-17 22:55:17.298 -07 000000610 INF: FPGA: Xmit ZDACW 36522\n [Z Motor]
17-03-17 22:55:17.298 -07 000000475 INF: FPGA: Recv ZDACW
17-03-17 22:55:17.308 -07 000000610 INF: FPGA: 'ZDACW 36522' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 22:55:17.308 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:55:17.308 -07 000000502 INF: FPGA: Recv ZDACR 36522
17-03-17 22:55:17.318 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:55:17.318 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:55:17.348 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 69, FrontChillerTemperature: 3.99219,
17-03-17 22:55:17.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:17.478 -07 000000502 INF: FPGA: Recv ZSGSRD 35317
17-03-17 22:55:17.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:55:17.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:17.488 -07 000000475 INF: FPGA: Recv ZSGSRD 35321
17-03-17 22:55:17.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:17.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:17.498 -07 000000409 INF: FPGA: Recv ZSGSRD 35319
17-03-17 22:55:17.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:17.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:17.508 -07 000000576 INF: FPGA: Recv ZSGSRD 35311
17-03-17 22:55:17.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:17.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:17.518 -07 000000462 INF: FPGA: Recv ZSGSRD 35318
17-03-17 22:55:17.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:17.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:17.528 -07 000000448 INF: FPGA: Recv ZSGSRD 35313
17-03-17 22:55:17.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:17.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:17.538 -07 000000475 INF: FPGA: Recv ZSGSRD 35318
17-03-17 22:55:17.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:17.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:17.548 -07 000000415 INF: FPGA: Recv ZSGSRD 35310
17-03-17 22:55:17.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:17.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:17.558 -07 000000478 INF: FPGA: Recv ZSGSRD 35315
17-03-17 22:55:17.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:17.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:17.568 -07 000000486 INF: FPGA: Recv ZSGSRD 35321
17-03-17 22:55:17.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:17.578 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:55:17.578 -07 000000502 INF: FPGA: Recv ZPIEZORD 31177
17-03-17 22:55:17.588 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:17.588 -07 000000610 INF: Z Motor: Piezo is near 46.6 V (nominally 0 to 100 V), expect near 55.7 V, since DAC is at 5.573 V. Piezo Error = -9.1 V.
17-03-17 22:55:17.588 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.2 um, Read 10 ADC samples: Avg = 35316 (-166.3 uncal um), Error = 0.9 uncal um, Median = 35318 (-166.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35310 (-166.3 uncal um), Max = 35321 (-166.4 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 22:55:17.588 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35316, posNoise = 5, negNoise = 6
17-03-17 22:55:17.588 -07 000000610 INF: Z Motor: After move to -0.167187, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:55:17.588 -07 000000610 INF: Z Motor: MoveAbsStepped took 286 ms)
17-03-17 22:55:17.588 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:55:17.588 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:55:17.588 -07 000000593 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:55:17.588 -07 000000551 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:55:17.588 -07 000000429 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:55:17.588 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:55:17.588 -07 000000486 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:55:17.588 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:55:17.588 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-17 22:55:17.588 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:55:17.588 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 22:55:17.588 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:55:17.598 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 22:55:17.598 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:55:17.598 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:55:17.598 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:55:17.608 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 22:55:17.608 -07 000000486 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 22:55:17.608 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-17 22:55:17.608 -07 000000429 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 22:55:17.608 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 463 463 223 223 36699 150\n [Camera]
17-03-17 22:55:17.808 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:55:18.278 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 655
17-03-17 22:55:18.278 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 655
17-03-17 22:55:18.278 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:55:18.278 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 655
17-03-17 22:55:18.278 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 655
17-03-17 22:55:18.278 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:55:18.278 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:55:18.278 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 1094749800, 0x0, 418435064) start.
17-03-17 22:55:18.278 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:55:18.278 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-17 22:55:18.468 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36699 848
17-03-17 22:55:18.618 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP turning grn on 998
17-03-17 22:55:18.658 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 1094749800, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 22:55:18.658 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 22:55:18.658 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:55:18.658 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 371 ms.
17-03-17 22:55:18.658 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 371 ms.
17-03-17 22:55:18.658 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:55:18.658 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 22:55:18.658 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 22:55:18.658 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 22:55:18.668 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 22:55:18.838 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1221
17-03-17 22:55:18.838 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1221
17-03-17 22:55:18.958 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1221
17-03-17 22:55:18.958 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1221
17-03-17 22:55:18.958 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:55:18.958 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:55:18.968 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:55:18.968 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 22:55:18.968 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:55:18.968 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 22:55:19.028 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP 1414
17-03-17 22:55:19.028 -07 000000415 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:55:19.028 -07 000000610 INF: FPGA: 'CAMDBLSNAP 463 463 223 223 36699 150' command took 2 ms to send, 1409 ms to get response, and 1420 ms overall
17-03-17 22:55:19.038 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 22:55:19.038 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.51904296875, Z-Position -0.167200828009565. ------
17-03-17 22:55:19.038 -07 000000429 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:55:19.038 -07 000000576 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.17365 mm
17-03-17 22:55:19.038 -07 000000576 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:55:19.038 -07 000000409 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:55:19.038 -07 000000618 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-17 22:55:19.038 -07 000000618 INF: Y Motor: Moving to 72.3626 mm, started at 71.5190 mm, delta = 0.8436 mm
17-03-17 22:55:19.038 -07 000000415 INF: Z Motor: Entering MoveAbsStepped (DAC = 37933, sync = True, waitForSettling = False)
17-03-17 22:55:19.038 -07 000000415 INF: Z Motor: Moving to -0.173646 mm, started at -0.167201 mm, distance = -6.45 um
17-03-17 22:55:19.048 -07 000000429 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 22:55:19.048 -07 000000429 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:55:19.058 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:55:19.058 -07 000000382 INF: FPGA: Recv YRDPOS 146471
17-03-17 22:55:19.068 -07 000000415 INF: FPGA: Xmit ZDACW 37933\n [Z Motor]
17-03-17 22:55:19.068 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-17 22:55:19.068 -07 000000618 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:55:19.068 -07 000000618 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:55:19.068 -07 000000618 INF: Y Motor: Moving 1350 steps-28
17-03-17 22:55:19.068 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 22:55:19.078 -07 000000618 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:55:19.078 -07 000000415 INF: FPGA: 'ZDACW 37933' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-17 22:55:19.088 -07 000000415 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:55:19.088 -07 000000541 INF: FPGA: Recv ZDACR 37933
17-03-17 22:55:19.098 -07 000000415 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:55:19.098 -07 000000415 INF: Z Motor: MoveAbsStepped took 50 ms (did NOT wait for settling yet))
17-03-17 22:55:19.248 -07 000000623 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:55:19.248 -07 000000429 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 204 ms overall
17-03-17 22:55:19.348 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 22:55:19.348 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 22:55:19.348 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:55:19.348 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 22:55:19.348 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 22:55:19.348 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:55:19.358 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 22:55:19.358 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 22:55:19.358 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 22:55:19.358 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 22:55:19.448 -07 000000486 INF: FPGA: Recv YMVTILE
17-03-17 22:55:19.448 -07 000000618 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 385 ms overall
17-03-17 22:55:19.498 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:55:19.508 -07 000000429 INF: FPGA: Recv YRDPOS 148172
17-03-17 22:55:19.518 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:55:19.518 -07 000000618 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:55:19.518 -07 000000618 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-17 22:55:19.518 -07 000000618 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 385 ms, distance = 0.844 mm, average velocity = 2.191 mm/sec
17-03-17 22:55:20.468 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:55:20.468 -07 000000462 INF: FPGA: Recv YRDPOS 148172
17-03-17 22:55:20.478 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:55:20.478 -07 000000618 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:55:20.498 -07 000000618 INF: Y Motor: After move to 72.362610, error = -0.013000, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:55:20.498 -07 000000618 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:55:20.498 -07 000000618 INF: Y Motor: Moved to 72.3496 after 1456 ms (table move)
17-03-17 22:55:20.498 -07 000000576 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173646 mm (DAC = 37933)
17-03-17 22:55:20.498 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:20.508 -07 000000541 INF: FPGA: Recv ZSGSRD 36327
17-03-17 22:55:20.508 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 22:55:20.508 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:20.508 -07 000000462 INF: FPGA: Recv ZSGSRD 36320
17-03-17 22:55:20.518 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:55:20.518 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:20.518 -07 000000478 INF: FPGA: Recv ZSGSRD 36324
17-03-17 22:55:20.528 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:20.528 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:20.528 -07 000000382 INF: FPGA: Recv ZSGSRD 36322
17-03-17 22:55:20.538 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:20.538 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:20.538 -07 000000618 INF: FPGA: Recv ZSGSRD 36318
17-03-17 22:55:20.548 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:20.548 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:20.548 -07 000000482 INF: FPGA: Recv ZSGSRD 36319
17-03-17 22:55:20.558 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:20.558 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:20.558 -07 000000486 INF: FPGA: Recv ZSGSRD 36325
17-03-17 22:55:20.568 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:20.568 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:20.568 -07 000000448 INF: FPGA: Recv ZSGSRD 36316
17-03-17 22:55:20.578 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:20.578 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:20.578 -07 000000382 INF: FPGA: Recv ZSGSRD 36324
17-03-17 22:55:20.588 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:20.588 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:20.588 -07 000000409 INF: FPGA: Recv ZSGSRD 36321
17-03-17 22:55:20.598 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:20.598 -07 000000576 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:55:20.598 -07 000000478 INF: FPGA: Recv ZPIEZORD 32538
17-03-17 22:55:20.608 -07 000000576 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:20.608 -07 000000576 INF: Z Motor: Piezo is near 49.5 V (nominally 0 to 100 V), expect near 57.9 V, since DAC is at 5.788 V. Piezo Error = -8.4 V.
17-03-17 22:55:20.608 -07 000000576 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.6 um, Read 10 ADC samples: Avg = 36322 (-172.8 uncal um), Error = 0.9 uncal um, Median = 36322 (-172.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36316 (-172.7 uncal um), Max = 36327 (-172.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 22:55:20.608 -07 000000576 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36322, posNoise = 5, negNoise = 6
17-03-17 22:55:20.608 -07 000000576 INF: Z Motor: After move to -0.173646, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:55:20.608 -07 000000576 INF: Z Motor: Settle wait time = 1459 ms, measure time = 102 ms (allowed 150 ms), total time = 1561 ms
17-03-17 22:55:20.608 -07 000000576 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 22:55:20.658 -07 000000576 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1615 ms
17-03-17 22:55:20.658 -07 000000576 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:55:20.658 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:55:20.658 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:55:20.658 -07 000000448 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:55:20.658 -07 000000547 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:55:20.658 -07 000000593 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:55:20.658 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:55:20.658 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:55:20.658 -07 000000593 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:55:20.668 -07 000000593 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 22:55:20.668 -07 000000593 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:55:20.678 -07 000000593 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 22:55:20.678 -07 000000593 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-17 22:55:20.678 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:55:20.728 -07 000000448 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:55:20.928 -07 000000576 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:55:20.928 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:55:20.928 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:55:20.928 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2182910056, 0x0, 559484976) start.
17-03-17 22:55:20.968 -07 000000627 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:55:20.968 -07 000000482 INF: FPGA: Recv CAMSNAP
17-03-17 22:55:20.968 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 284 ms overall
17-03-17 22:55:21.058 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2182910056, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 22:55:21.058 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:55:21.058 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:55:21.058 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 22:55:21.068 -07 000000551 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:55:21.068 -07 000000502 INF: Autofocus start
17-03-17 22:55:21.068 -07 000000502 INF: MeasureProfile start
17-03-17 22:55:21.068 -07 000000475 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:55:21.078 -07 000000551 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 22:55:21.078 -07 000000551 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:55:21.078 -07 000000502 INF: MeasureProfile done
17-03-17 22:55:21.078 -07 000000502 INF: X=16  Z correction [um]=0.01042744
17-03-17 22:55:21.078 -07 000000502 INF: Autofocus finished
17-03-17 22:55:21.278 -07 000000486 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:55:21.278 -07 000000551 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:55:21.278 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.349609375, Z-position -0.173663585424176. ----------
17-03-17 22:55:21.278 -07 000000610 INF: Cycle	69	Tile	16	Exposure Settings		A	463	G	223	T	223	C	463
17-03-17 22:55:21.288 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36448, sync = True, waitForSettling = True)
17-03-17 22:55:21.288 -07 000000610 INF: Z Motor: Moving to -0.166848 mm, started at -0.173664 mm, distance = 6.82 um
17-03-17 22:55:21.288 -07 000000610 INF: FPGA: Xmit ZDACW 36448\n [Z Motor]
17-03-17 22:55:21.288 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 22:55:21.298 -07 000000610 INF: FPGA: 'ZDACW 36448' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:55:21.298 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:55:21.298 -07 000000482 INF: FPGA: Recv ZDACR 36448
17-03-17 22:55:21.308 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:21.308 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:55:21.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:21.458 -07 000000382 INF: FPGA: Recv ZSGSRD 35267
17-03-17 22:55:21.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:55:21.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:21.468 -07 000000576 INF: FPGA: Recv ZSGSRD 35266
17-03-17 22:55:21.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:21.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:21.478 -07 000000462 INF: FPGA: Recv ZSGSRD 35262
17-03-17 22:55:21.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:21.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:21.488 -07 000000501 INF: FPGA: Recv ZSGSRD 35260
17-03-17 22:55:21.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:21.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:21.498 -07 000000409 INF: FPGA: Recv ZSGSRD 35264
17-03-17 22:55:21.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:21.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:21.508 -07 000000547 INF: FPGA: Recv ZSGSRD 35262
17-03-17 22:55:21.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:21.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:21.518 -07 000000502 INF: FPGA: Recv ZSGSRD 35262
17-03-17 22:55:21.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:21.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:21.528 -07 000000462 INF: FPGA: Recv ZSGSRD 35263
17-03-17 22:55:21.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:21.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:21.538 -07 000000593 INF: FPGA: Recv ZSGSRD 35259
17-03-17 22:55:21.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:21.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:21.548 -07 000000478 INF: FPGA: Recv ZSGSRD 35257
17-03-17 22:55:21.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:21.558 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:55:21.558 -07 000000382 INF: FPGA: Recv ZPIEZORD 31126
17-03-17 22:55:21.568 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:21.568 -07 000000610 INF: Z Motor: Piezo is near 46.5 V (nominally 0 to 100 V), expect near 55.6 V, since DAC is at 5.562 V. Piezo Error = -9.1 V.
17-03-17 22:55:21.568 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.8 um, Read 10 ADC samples: Avg = 35262 (-166.0 uncal um), Error = 0.9 uncal um, Median = 35262 (-166.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35257 (-166.0 uncal um), Max = 35267 (-166.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 22:55:21.568 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35262, posNoise = 5, negNoise = 5
17-03-17 22:55:21.568 -07 000000610 INF: Z Motor: After move to -0.166848, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:55:21.568 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 22:55:21.568 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:55:21.568 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:55:21.568 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:55:21.568 -07 000000415 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:55:21.568 -07 000000409 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:55:21.568 -07 000000551 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:55:21.568 -07 000000409 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:55:21.568 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:55:21.568 -07 000000409 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:55:21.568 -07 000000409 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:55:21.568 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:55:21.568 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:55:21.578 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 22:55:21.578 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:55:21.578 -07 000000409 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:55:21.578 -07 000000409 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:55:21.588 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 22:55:21.588 -07 000000551 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 22:55:21.588 -07 000000409 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 22:55:21.588 -07 000000409 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 22:55:21.588 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 463 463 223 223 36624 150\n [Camera]
17-03-17 22:55:21.788 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:55:22.018 -07 000000547 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:55:22.018 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 68. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1095, R2=1131, Total=2226. Warn if over 250 bubbles per interval.
17-03-17 22:55:22.248 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 657
17-03-17 22:55:22.248 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 657
17-03-17 22:55:22.248 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:55:22.248 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:55:22.248 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 1094749800, 0x0, 391868352) start.
17-03-17 22:55:22.258 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 657
17-03-17 22:55:22.258 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 657
17-03-17 22:55:22.258 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:55:22.258 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:55:22.258 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) start.
17-03-17 22:55:22.438 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36624 848
17-03-17 22:55:22.588 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP turning grn on 998
17-03-17 22:55:22.638 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 1094749800, 0x0, 391868352) end. Duration was 383 ms.
17-03-17 22:55:22.638 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 22:55:22.638 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:55:22.638 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) end. Duration was 383 ms.
17-03-17 22:55:22.638 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-17 22:55:22.638 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:55:22.638 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:55:22.638 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 22:55:22.758 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 114 ms.
17-03-17 22:55:22.758 -07 000000551 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 69, FrontChillerTemperature: 3.977204,
17-03-17 22:55:22.758 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 508 ms.
17-03-17 22:55:22.818 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1221
17-03-17 22:55:22.818 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1221
17-03-17 22:55:22.818 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:55:22.818 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1221
17-03-17 22:55:22.818 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1221
17-03-17 22:55:22.818 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:55:22.828 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:55:22.828 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 22:55:22.828 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:55:22.828 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 22:55:23.008 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP 1414
17-03-17 22:55:23.008 -07 000000627 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:55:23.008 -07 000000610 INF: FPGA: 'CAMDBLSNAP 463 463 223 223 36624 150' command took 2 ms to send, 1413 ms to get response, and 1420 ms overall
17-03-17 22:55:23.008 -07 000000610 INF: Skipping AutoFocus in Tile 17: adopting Best-Z from the cache: -0.167308
17-03-17 22:55:23.008 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.16731 mm
17-03-17 22:55:23.008 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:55:23.008 -07 000000551 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-17 22:55:23.008 -07 000000551 INF: Y Motor: Moving to 73.1926 mm, started at 72.3496 mm, delta = 0.8430 mm
17-03-17 22:55:23.008 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:55:23.008 -07 000000429 INF: Z Motor: Entering MoveAbsStepped (DAC = 36548, sync = True, waitForSettling = False)
17-03-17 22:55:23.008 -07 000000429 INF: Z Motor: Moving to -0.167306 mm, started at -0.166854 mm, distance = -0.45 um
17-03-17 22:55:23.018 -07 000000429 INF: FPGA: Xmit ZDACW 36548\n [Z Motor]
17-03-17 22:55:23.018 -07 000000547 INF: FPGA: Recv YRDPOS 148173
17-03-17 22:55:23.018 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 22:55:23.018 -07 000000551 INF: Y Motor: Encoder = 148173 = motor step 115760.2 = 72.3501 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:55:23.018 -07 000000502 INF: FPGA: Recv ZDACW
17-03-17 22:55:23.018 -07 000000551 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:55:23.018 -07 000000551 INF: Y Motor: Moving 1348 steps-27
17-03-17 22:55:23.028 -07 000000429 INF: FPGA: 'ZDACW 36548' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:55:23.028 -07 000000429 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:55:23.028 -07 000000502 INF: FPGA: Recv ZDACR 36548
17-03-17 22:55:23.038 -07 000000429 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:23.038 -07 000000429 INF: Z Motor: MoveAbsStepped took 21 ms (did NOT wait for settling yet))
17-03-17 22:55:23.038 -07 000000551 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:55:23.198 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 370 ms.
17-03-17 22:55:23.198 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 370 ms.
17-03-17 22:55:23.198 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:55:23.198 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:55:23.198 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 22:55:23.198 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 22:55:23.198 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:55:23.208 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:55:23.208 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 22:55:23.208 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 22:55:23.408 -07 000000415 INF: FPGA: Recv YMVTILE
17-03-17 22:55:23.408 -07 000000551 INF: FPGA: 'YMVTILE 1327' command took 1 ms to send, 369 ms to get response, and 390 ms overall
17-03-17 22:55:23.458 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:55:23.458 -07 000000576 INF: FPGA: Recv YRDPOS 149864
17-03-17 22:55:23.468 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:23.468 -07 000000551 INF: Y Motor: Encoder = 149864 = motor step 117081.3 = 73.1758 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:55:23.468 -07 000000551 INF: Y Motor: Position error before settling (table move) = -34 encoder counts (-0.017 mm)
17-03-17 22:55:23.468 -07 000000551 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 390 ms, distance = 0.843 mm, average velocity = 2.162 mm/sec
17-03-17 22:55:24.418 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:55:24.418 -07 000000478 INF: FPGA: Recv YRDPOS 149865
17-03-17 22:55:24.428 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:55:24.428 -07 000000551 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:55:24.448 -07 000000551 INF: Y Motor: After move to 73.192604, error = -0.016335, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:55:24.448 -07 000000551 INF: Y Motor: Position error after settling (table move) = -33 encoder counts (-0.016 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 22:55:24.448 -07 000000551 INF: Y Motor: Moved to 73.1763 after 1437 ms (table move)
17-03-17 22:55:24.448 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.167306 mm (DAC = 36548)
17-03-17 22:55:24.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:24.458 -07 000000618 INF: FPGA: Recv ZSGSRD 35328
17-03-17 22:55:24.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 22:55:24.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:24.458 -07 000000627 INF: FPGA: Recv ZSGSRD 35327
17-03-17 22:55:24.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:24.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:24.468 -07 000000502 INF: FPGA: Recv ZSGSRD 35335
17-03-17 22:55:24.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:24.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:24.478 -07 000000409 INF: FPGA: Recv ZSGSRD 35335
17-03-17 22:55:24.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:24.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:24.488 -07 000000486 INF: FPGA: Recv ZSGSRD 35336
17-03-17 22:55:24.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:24.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:24.498 -07 000000623 INF: FPGA: Recv ZSGSRD 35329
17-03-17 22:55:24.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:24.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:24.508 -07 000000462 INF: FPGA: Recv ZSGSRD 35342
17-03-17 22:55:24.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:24.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:24.518 -07 000000576 INF: FPGA: Recv ZSGSRD 35331
17-03-17 22:55:24.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:24.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:24.528 -07 000000429 INF: FPGA: Recv ZSGSRD 35337
17-03-17 22:55:24.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:24.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:24.538 -07 000000627 INF: FPGA: Recv ZSGSRD 35341
17-03-17 22:55:24.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:24.548 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:55:24.548 -07 000000623 INF: FPGA: Recv ZPIEZORD 31210
17-03-17 22:55:24.558 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:24.558 -07 000000610 INF: Z Motor: Piezo is near 46.7 V (nominally 0 to 100 V), expect near 55.8 V, since DAC is at 5.577 V. Piezo Error = -9.1 V.
17-03-17 22:55:24.558 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.3 um, Read 10 ADC samples: Avg = 35334 (-166.4 uncal um), Error = 0.9 uncal um, Median = 35335 (-166.5 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 35327 (-166.4 uncal um), Max = 35342 (-166.5 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 22:55:24.558 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35334, posNoise = 8, negNoise = 7
17-03-17 22:55:24.558 -07 000000610 INF: Z Motor: After move to -0.167306, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:55:24.558 -07 000000610 INF: Z Motor: Settle wait time = 1438 ms, measure time = 103 ms (allowed 150 ms), total time = 1541 ms
17-03-17 22:55:24.558 -07 000000610 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 22:55:24.608 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1593 ms
17-03-17 22:55:24.608 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:55:24.608 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.17626953125, Z-position -0.167316463828117. ----------
17-03-17 22:55:24.608 -07 000000610 INF: Cycle	69	Tile	17	Exposure Settings		A	463	G	223	T	223	C	463
17-03-17 22:55:24.608 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36372, sync = True, waitForSettling = True)
17-03-17 22:55:24.608 -07 000000610 INF: Z Motor: Moving to -0.166500 mm, started at -0.167316 mm, distance = 0.82 um
17-03-17 22:55:24.608 -07 000000610 INF: FPGA: Xmit ZDACW 36372\n [Z Motor]
17-03-17 22:55:24.608 -07 000000547 INF: FPGA: Recv ZDACW
17-03-17 22:55:24.618 -07 000000610 INF: FPGA: 'ZDACW 36372' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 22:55:24.618 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:55:24.618 -07 000000502 INF: FPGA: Recv ZDACR 36372
17-03-17 22:55:24.628 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:24.628 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:55:24.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:24.778 -07 000000541 INF: FPGA: Recv ZSGSRD 35208
17-03-17 22:55:24.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:55:24.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:24.788 -07 000000576 INF: FPGA: Recv ZSGSRD 35212
17-03-17 22:55:24.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:24.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:24.798 -07 000000429 INF: FPGA: Recv ZSGSRD 35208
17-03-17 22:55:24.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:24.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:24.808 -07 000000627 INF: FPGA: Recv ZSGSRD 35209
17-03-17 22:55:24.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:24.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:24.818 -07 000000551 INF: FPGA: Recv ZSGSRD 35207
17-03-17 22:55:24.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:24.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:24.828 -07 000000462 INF: FPGA: Recv ZSGSRD 35207
17-03-17 22:55:24.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:24.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:24.838 -07 000000482 INF: FPGA: Recv ZSGSRD 35211
17-03-17 22:55:24.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:24.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:24.848 -07 000000382 INF: FPGA: Recv ZSGSRD 35211
17-03-17 22:55:24.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:24.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:24.858 -07 000000486 INF: FPGA: Recv ZSGSRD 35201
17-03-17 22:55:24.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:24.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:24.868 -07 000000623 INF: FPGA: Recv ZSGSRD 35211
17-03-17 22:55:24.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:24.878 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:55:24.878 -07 000000415 INF: FPGA: Recv ZPIEZORD 31051
17-03-17 22:55:24.888 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:55:24.888 -07 000000610 INF: Z Motor: Piezo is near 46.3 V (nominally 0 to 100 V), expect near 55.5 V, since DAC is at 5.550 V. Piezo Error = -9.2 V.
17-03-17 22:55:24.888 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.5 um, Read 10 ADC samples: Avg = 35208 (-165.6 uncal um), Error = 0.9 uncal um, Median = 35208 (-165.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35201 (-165.6 uncal um), Max = 35212 (-165.7 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 22:55:24.888 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35208, posNoise = 4, negNoise = 7
17-03-17 22:55:24.888 -07 000000610 INF: Z Motor: After move to -0.166500, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:55:24.888 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 22:55:24.888 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:55:24.888 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:55:24.888 -07 000000623 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:55:24.888 -07 000000448 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:55:24.888 -07 000000627 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:55:24.888 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:55:24.888 -07 000000475 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:55:24.888 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:55:24.888 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:55:24.888 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:55:24.888 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:55:24.888 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:55:24.888 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 22:55:24.898 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:55:24.898 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:55:24.898 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:55:24.908 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 22:55:24.908 -07 000000627 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 22:55:24.908 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 22:55:24.908 -07 000000475 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 22:55:24.908 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 463 463 223 223 36548 150\n [Camera]
17-03-17 22:55:25.108 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:55:25.578 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 655
17-03-17 22:55:25.578 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 655
17-03-17 22:55:25.578 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:55:25.578 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 655
17-03-17 22:55:25.578 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 655
17-03-17 22:55:25.578 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:55:25.578 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:55:25.578 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2197586136, 0x0, 391868352) start.
17-03-17 22:55:25.588 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:55:25.588 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 1094749800, 0x0, 418435064) start.
17-03-17 22:55:25.768 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36548 848
17-03-17 22:55:25.918 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP turning grn on 998
17-03-17 22:55:25.958 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2197586136, 0x0, 391868352) end. Duration was 373 ms.
17-03-17 22:55:25.958 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-17 22:55:25.958 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:55:25.958 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 1094749800, 0x0, 418435064) end. Duration was 370 ms.
17-03-17 22:55:25.958 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 370 ms.
17-03-17 22:55:25.958 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:55:25.958 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:55:25.958 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 22:55:25.958 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:55:25.968 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 22:55:26.138 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1221
17-03-17 22:55:26.138 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1221
17-03-17 22:55:26.138 -07 000000409 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:55:26.138 -07 000000409 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:55:26.138 -07 000000409 INF: Camera: sBCa_ReadImage(785074288, 1165594328, 0x0, 391868352) start.
17-03-17 22:55:26.138 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1221
17-03-17 22:55:26.138 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1221
17-03-17 22:55:26.148 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:55:26.148 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:55:26.148 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 22:55:26.328 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP 1414
17-03-17 22:55:26.328 -07 000000486 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:55:26.328 -07 000000610 INF: FPGA: 'CAMDBLSNAP 463 463 223 223 36548 150' command took 4 ms to send, 1408 ms to get response, and 1420 ms overall
17-03-17 22:55:26.338 -07 000000610 INF: Skipping AutoFocus in Tile 18: adopting Best-Z from the cache: -0.166910
17-03-17 22:55:26.338 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.16691 mm
17-03-17 22:55:26.338 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:55:26.338 -07 000000627 INF: Z Motor: Entering MoveAbsStepped (DAC = 36461, sync = True, waitForSettling = False)
17-03-17 22:55:26.338 -07 000000551 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-17 22:55:26.338 -07 000000551 INF: Y Motor: Moving to 74.0226 mm, started at 73.1763 mm, delta = 0.8463 mm
17-03-17 22:55:26.338 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:55:26.338 -07 000000627 INF: Z Motor: Moving to -0.166908 mm, started at -0.166507 mm, distance = -0.40 um
17-03-17 22:55:26.338 -07 000000482 INF: FPGA: Recv YRDPOS 149865
17-03-17 22:55:26.348 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:55:26.348 -07 000000551 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:55:26.348 -07 000000551 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:55:26.348 -07 000000551 INF: Y Motor: Moving 1354 steps-34
17-03-17 22:55:26.348 -07 000000627 INF: FPGA: Xmit ZDACW 36461\n [Z Motor]
17-03-17 22:55:26.348 -07 000000502 INF: FPGA: Recv ZDACW
17-03-17 22:55:26.358 -07 000000627 INF: FPGA: 'ZDACW 36461' command took 1 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 22:55:26.358 -07 000000551 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:55:26.368 -07 000000627 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:55:26.368 -07 000000623 INF: FPGA: Recv ZDACR 36461
17-03-17 22:55:26.378 -07 000000627 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:55:26.378 -07 000000627 INF: Z Motor: MoveAbsStepped took 34 ms (did NOT wait for settling yet))
17-03-17 22:55:26.528 -07 000000409 INF: Camera: sBCa_ReadImage(785074288, 1165594328, 0x0, 391868352) end. Duration was 383 ms.
17-03-17 22:55:26.528 -07 000000409 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 22:55:26.528 -07 000000409 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:55:26.528 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 381 ms.
17-03-17 22:55:26.528 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-17 22:55:26.528 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:55:26.528 -07 000000409 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:55:26.528 -07 000000409 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 22:55:26.528 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:55:26.538 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 22:55:26.738 -07 000000429 INF: FPGA: Recv YMVTILE
17-03-17 22:55:26.738 -07 000000551 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 390 ms overall
17-03-17 22:55:26.768 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:55:26.768 -07 000000409 INF: FPGA: Recv YRDPOS 151569
17-03-17 22:55:26.778 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 22:55:26.778 -07 000000551 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:55:26.778 -07 000000551 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-17 22:55:26.778 -07 000000551 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 390 ms, distance = 0.846 mm, average velocity = 2.170 mm/sec
17-03-17 22:55:27.018 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:55:27.018 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 68. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1095, R2=1131, Total=2226. Warn if over 250 bubbles per interval.
17-03-17 22:55:27.728 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:55:27.728 -07 000000448 INF: FPGA: Recv YRDPOS 151569
17-03-17 22:55:27.738 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:55:27.738 -07 000000551 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:55:27.748 -07 000000551 INF: Y Motor: After move to 74.022606, error = -0.014305, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:55:27.748 -07 000000551 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:55:27.748 -07 000000551 INF: Y Motor: Moved to 74.0083 after 1412 ms (table move)
17-03-17 22:55:27.758 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.166908 mm (DAC = 36461)
17-03-17 22:55:27.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:27.758 -07 000000618 INF: FPGA: Recv ZSGSRD 35271
17-03-17 22:55:27.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:55:27.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:27.768 -07 000000627 INF: FPGA: Recv ZSGSRD 35269
17-03-17 22:55:27.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:27.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:27.778 -07 000000486 INF: FPGA: Recv ZSGSRD 35274
17-03-17 22:55:27.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:27.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:27.788 -07 000000502 INF: FPGA: Recv ZSGSRD 35272
17-03-17 22:55:27.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:27.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:27.808 -07 000000482 INF: FPGA: Recv ZSGSRD 35274
17-03-17 22:55:27.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:55:27.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:27.818 -07 000000409 INF: FPGA: Recv ZSGSRD 35270
17-03-17 22:55:27.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:27.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:27.828 -07 000000502 INF: FPGA: Recv ZSGSRD 35280
17-03-17 22:55:27.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:27.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:27.838 -07 000000475 INF: FPGA: Recv ZSGSRD 35276
17-03-17 22:55:27.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:27.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:27.848 -07 000000448 INF: FPGA: Recv ZSGSRD 35271
17-03-17 22:55:27.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:27.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:27.858 -07 000000501 INF: FPGA: Recv ZSGSRD 35267
17-03-17 22:55:27.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:27.868 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:55:27.868 -07 000000547 INF: FPGA: Recv ZPIEZORD 31163
17-03-17 22:55:27.878 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:27.878 -07 000000610 INF: Z Motor: Piezo is near 46.6 V (nominally 0 to 100 V), expect near 55.6 V, since DAC is at 5.564 V. Piezo Error = -9.1 V.
17-03-17 22:55:27.878 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.9 um, Read 10 ADC samples: Avg = 35272 (-166.1 uncal um), Error = 0.9 uncal um, Median = 35272 (-166.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35267 (-166.0 uncal um), Max = 35280 (-166.1 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 22:55:27.878 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35272, posNoise = 8, negNoise = 5
17-03-17 22:55:27.878 -07 000000610 INF: Z Motor: After move to -0.166908, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:55:27.878 -07 000000610 INF: Z Motor: Settle wait time = 1414 ms, measure time = 119 ms (allowed 150 ms), total time = 1533 ms
17-03-17 22:55:27.878 -07 000000610 INF: Z Motor: Waiting extra 31 ms after reading position to reach expected total of 150 ms
17-03-17 22:55:27.918 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1578 ms
17-03-17 22:55:27.918 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:55:27.918 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.00830078125, Z-position -0.166918162675327. ----------
17-03-17 22:55:27.918 -07 000000610 INF: Cycle	69	Tile	18	Exposure Settings		A	463	G	223	T	223	C	463
17-03-17 22:55:27.918 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36285, sync = True, waitForSettling = True)
17-03-17 22:55:27.918 -07 000000610 INF: Z Motor: Moving to -0.166102 mm, started at -0.166918 mm, distance = 0.82 um
17-03-17 22:55:27.918 -07 000000610 INF: FPGA: Xmit ZDACW 36285\n [Z Motor]
17-03-17 22:55:27.918 -07 000000482 INF: FPGA: Recv ZDACW
17-03-17 22:55:27.928 -07 000000610 INF: FPGA: 'ZDACW 36285' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 22:55:27.928 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:55:27.928 -07 000000409 INF: FPGA: Recv ZDACR 36285
17-03-17 22:55:27.938 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:27.938 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:55:28.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:28.088 -07 000000429 INF: FPGA: Recv ZSGSRD 35148
17-03-17 22:55:28.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:55:28.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:28.098 -07 000000475 INF: FPGA: Recv ZSGSRD 35146
17-03-17 22:55:28.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:28.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:28.118 -07 000000482 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 69, FrontChillerTemperature: 3.99219,
17-03-17 22:55:28.118 -07 000000551 INF: FPGA: Recv ZSGSRD 35146
17-03-17 22:55:28.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:55:28.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:28.148 -07 000000627 INF: FPGA: Recv ZSGSRD 35143
17-03-17 22:55:28.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:55:28.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:28.178 -07 000000382 INF: FPGA: Recv ZSGSRD 35144
17-03-17 22:55:28.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:55:28.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:28.198 -07 000000623 INF: FPGA: Recv ZSGSRD 35145
17-03-17 22:55:28.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:55:28.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:28.208 -07 000000448 INF: FPGA: Recv ZSGSRD 35148
17-03-17 22:55:28.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:28.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:28.218 -07 000000486 INF: FPGA: Recv ZSGSRD 35146
17-03-17 22:55:28.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:28.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:28.228 -07 000000551 INF: FPGA: Recv ZSGSRD 35146
17-03-17 22:55:28.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:28.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:28.238 -07 000000541 INF: FPGA: Recv ZSGSRD 35151
17-03-17 22:55:28.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:28.248 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:55:28.248 -07 000000623 INF: FPGA: Recv ZPIEZORD 30993
17-03-17 22:55:28.258 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:28.258 -07 000000610 INF: Z Motor: Piezo is near 46.2 V (nominally 0 to 100 V), expect near 55.4 V, since DAC is at 5.537 V. Piezo Error = -9.2 V.
17-03-17 22:55:28.258 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.1 um, Read 10 ADC samples: Avg = 35146 (-165.2 uncal um), Error = 0.9 uncal um, Median = 35146 (-165.2 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35143 (-165.2 uncal um), Max = 35151 (-165.3 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 22:55:28.258 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35146, posNoise = 5, negNoise = 3
17-03-17 22:55:28.258 -07 000000610 INF: Z Motor: After move to -0.166102, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:55:28.258 -07 000000610 INF: Z Motor: MoveAbsStepped took 336 ms)
17-03-17 22:55:28.258 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:55:28.258 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:55:28.258 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:55:28.258 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:55:28.258 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:55:28.258 -07 000000541 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:55:28.258 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:55:28.258 -07 000000547 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:55:28.258 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:55:28.258 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:55:28.258 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-17 22:55:28.258 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:55:28.258 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 22:55:28.258 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:55:28.268 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:55:28.268 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:55:28.278 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 12 ms.
17-03-17 22:55:28.278 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 22:55:28.278 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 13 ms.
17-03-17 22:55:28.278 -07 000000541 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 22:55:28.278 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 463 463 223 223 36461 150\n [Camera]
17-03-17 22:55:28.478 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:55:28.948 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 655
17-03-17 22:55:28.948 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 655
17-03-17 22:55:28.948 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:55:28.948 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:55:28.948 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-17 22:55:28.948 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 655
17-03-17 22:55:28.948 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 655
17-03-17 22:55:28.948 -07 000000409 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:55:28.948 -07 000000409 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:55:28.948 -07 000000409 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-17 22:55:29.138 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36461 848
17-03-17 22:55:29.288 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning grn on 998
17-03-17 22:55:29.318 -07 000000409 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 372 ms.
17-03-17 22:55:29.318 -07 000000409 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-17 22:55:29.318 -07 000000409 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:55:29.328 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 378 ms.
17-03-17 22:55:29.328 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-17 22:55:29.328 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:55:29.328 -07 000000409 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:55:29.328 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:55:29.328 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 22:55:29.338 -07 000000409 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 22:55:29.508 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1221
17-03-17 22:55:29.508 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1221
17-03-17 22:55:29.508 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:55:29.508 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:55:29.508 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-17 22:55:29.508 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1221
17-03-17 22:55:29.508 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1221
17-03-17 22:55:29.508 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:55:29.648 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:55:29.648 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-17 22:55:29.698 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP 1414
17-03-17 22:55:29.698 -07 000000448 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:55:29.698 -07 000000610 INF: FPGA: 'CAMDBLSNAP 463 463 223 223 36461 150' command took 2 ms to send, 1417 ms to get response, and 1420 ms overall
17-03-17 22:55:29.698 -07 000000610 INF: Skipping AutoFocus in Tile 19: adopting Best-Z from the cache: -0.166533
17-03-17 22:55:29.708 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.16653 mm
17-03-17 22:55:29.708 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:55:29.708 -07 000000482 INF: Z Motor: Entering MoveAbsStepped (DAC = 36379, sync = True, waitForSettling = False)
17-03-17 22:55:29.708 -07 000000482 INF: Z Motor: Moving to -0.166532 mm, started at -0.166109 mm, distance = -0.42 um
17-03-17 22:55:29.708 -07 000000482 INF: FPGA: Xmit ZDACW 36379\n [Z Motor]
17-03-17 22:55:29.708 -07 000000541 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-17 22:55:29.708 -07 000000541 INF: Y Motor: Moving to 74.8526 mm, started at 74.0083 mm, delta = 0.8443 mm
17-03-17 22:55:29.708 -07 000000593 INF: FPGA: Recv ZDACW
17-03-17 22:55:29.718 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:55:29.718 -07 000000482 INF: FPGA: 'ZDACW 36379' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:55:29.718 -07 000000415 INF: FPGA: Recv YRDPOS 151569
17-03-17 22:55:29.728 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 22:55:29.728 -07 000000541 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:55:29.728 -07 000000541 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:55:29.728 -07 000000541 INF: Y Motor: Moving 1351 steps-29
17-03-17 22:55:29.728 -07 000000482 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:55:29.728 -07 000000627 INF: FPGA: Recv ZDACR 36379
17-03-17 22:55:29.738 -07 000000482 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:55:29.738 -07 000000482 INF: Z Motor: MoveAbsStepped took 27 ms (did NOT wait for settling yet))
17-03-17 22:55:29.738 -07 000000541 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:55:29.898 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 392 ms.
17-03-17 22:55:29.908 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 22:55:29.908 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:55:29.908 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:55:29.908 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 22:55:30.018 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 377 ms.
17-03-17 22:55:30.018 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-17 22:55:30.018 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:55:30.028 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:55:30.028 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 518 ms.
17-03-17 22:55:30.108 -07 000000627 INF: FPGA: Recv YMVTILE
17-03-17 22:55:30.108 -07 000000541 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 388 ms overall
17-03-17 22:55:30.138 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:55:30.138 -07 000000448 INF: FPGA: Recv YRDPOS 153256
17-03-17 22:55:30.148 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:55:30.148 -07 000000541 INF: Y Motor: Encoder = 153256 = motor step 119731.3 = 74.8320 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:55:30.148 -07 000000541 INF: Y Motor: Position error before settling (table move) = -42 encoder counts (-0.021 mm)
17-03-17 22:55:30.148 -07 000000541 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.844 mm, average velocity = 2.176 mm/sec
17-03-17 22:55:31.098 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:55:31.098 -07 000000502 INF: FPGA: Recv YRDPOS 153256
17-03-17 22:55:31.108 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:55:31.108 -07 000000541 INF: Y Motor: Encoder = 153256 = motor step 119731.3 = 74.8320 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:55:31.118 -07 000000541 INF: Y Motor: After move to 74.852608, error = -0.020576, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:55:31.118 -07 000000541 INF: Y Motor: Position error after settling (table move) = -42 encoder counts (-0.021 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:55:31.118 -07 000000541 INF: Y Motor: Moved to 74.8320 after 1415 ms (table move)
17-03-17 22:55:31.128 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.166532 mm (DAC = 36379)
17-03-17 22:55:31.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:31.128 -07 000000547 INF: FPGA: Recv ZSGSRD 35219
17-03-17 22:55:31.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:31.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:31.138 -07 000000627 INF: FPGA: Recv ZSGSRD 35203
17-03-17 22:55:31.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:31.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:31.148 -07 000000551 INF: FPGA: Recv ZSGSRD 35207
17-03-17 22:55:31.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:31.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:31.158 -07 000000486 INF: FPGA: Recv ZSGSRD 35212
17-03-17 22:55:31.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:31.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:31.168 -07 000000462 INF: FPGA: Recv ZSGSRD 35214
17-03-17 22:55:31.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:31.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:31.178 -07 000000409 INF: FPGA: Recv ZSGSRD 35218
17-03-17 22:55:31.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:31.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:31.188 -07 000000482 INF: FPGA: Recv ZSGSRD 35222
17-03-17 22:55:31.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:31.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:31.198 -07 000000623 INF: FPGA: Recv ZSGSRD 35219
17-03-17 22:55:31.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:31.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:31.208 -07 000000415 INF: FPGA: Recv ZSGSRD 35212
17-03-17 22:55:31.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:31.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:31.218 -07 000000462 INF: FPGA: Recv ZSGSRD 35205
17-03-17 22:55:31.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:31.228 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:55:31.228 -07 000000486 INF: FPGA: Recv ZPIEZORD 31128
17-03-17 22:55:31.238 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:31.238 -07 000000610 INF: Z Motor: Piezo is near 46.5 V (nominally 0 to 100 V), expect near 55.5 V, since DAC is at 5.551 V. Piezo Error = -9.0 V.
17-03-17 22:55:31.238 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.5 um, Read 10 ADC samples: Avg = 35213 (-165.7 uncal um), Error = 0.9 uncal um, Median = 35213 (-165.7 uncal um), StdDev = 7 (0.0 uncal um), Range = 19 (0.1 uncal um), Min = 35203 (-165.6 uncal um), Max = 35222 (-165.7 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-17 22:55:31.238 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35213, posNoise = 9, negNoise = 10
17-03-17 22:55:31.238 -07 000000610 INF: Z Motor: After move to -0.166532, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:55:31.238 -07 000000610 INF: Z Motor: Settle wait time = 1418 ms, measure time = 110 ms (allowed 150 ms), total time = 1528 ms
17-03-17 22:55:31.238 -07 000000610 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-17 22:55:31.278 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1569 ms
17-03-17 22:55:31.278 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:55:31.278 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83203125, Z-position -0.166539134158964. ----------
17-03-17 22:55:31.278 -07 000000610 INF: Cycle	69	Tile	19	Exposure Settings		A	463	G	223	T	223	C	463
17-03-17 22:55:31.278 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36202, sync = True, waitForSettling = True)
17-03-17 22:55:31.278 -07 000000610 INF: Z Motor: Moving to -0.165722 mm, started at -0.166539 mm, distance = 0.82 um
17-03-17 22:55:31.278 -07 000000610 INF: FPGA: Xmit ZDACW 36202\n [Z Motor]
17-03-17 22:55:31.278 -07 000000448 INF: FPGA: Recv ZDACW
17-03-17 22:55:31.288 -07 000000610 INF: FPGA: 'ZDACW 36202' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:55:31.288 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:55:31.288 -07 000000382 INF: FPGA: Recv ZDACR 36202
17-03-17 22:55:31.298 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:31.298 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:55:31.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:31.448 -07 000000501 INF: FPGA: Recv ZSGSRD 35085
17-03-17 22:55:31.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:31.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:31.458 -07 000000576 INF: FPGA: Recv ZSGSRD 35086
17-03-17 22:55:31.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:31.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:31.468 -07 000000627 INF: FPGA: Recv ZSGSRD 35088
17-03-17 22:55:31.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:31.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:31.478 -07 000000482 INF: FPGA: Recv ZSGSRD 35086
17-03-17 22:55:31.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:31.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:31.488 -07 000000541 INF: FPGA: Recv ZSGSRD 35092
17-03-17 22:55:31.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:31.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:31.498 -07 000000478 INF: FPGA: Recv ZSGSRD 35091
17-03-17 22:55:31.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:31.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:31.508 -07 000000551 INF: FPGA: Recv ZSGSRD 35089
17-03-17 22:55:31.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:31.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:31.518 -07 000000547 INF: FPGA: Recv ZSGSRD 35085
17-03-17 22:55:31.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:31.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:31.528 -07 000000475 INF: FPGA: Recv ZSGSRD 35086
17-03-17 22:55:31.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:31.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:31.538 -07 000000382 INF: FPGA: Recv ZSGSRD 35086
17-03-17 22:55:31.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:31.548 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:55:31.548 -07 000000502 INF: FPGA: Recv ZPIEZORD 30953
17-03-17 22:55:31.558 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:31.558 -07 000000610 INF: Z Motor: Piezo is near 46.1 V (nominally 0 to 100 V), expect near 55.2 V, since DAC is at 5.524 V. Piezo Error = -9.1 V.
17-03-17 22:55:31.558 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -165.7 um, Read 10 ADC samples: Avg = 35087 (-164.9 uncal um), Error = 0.9 uncal um, Median = 35086 (-164.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 35085 (-164.9 uncal um), Max = 35092 (-164.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 2 (0.0 uncal um)
17-03-17 22:55:31.558 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35087, posNoise = 5, negNoise = 2
17-03-17 22:55:31.558 -07 000000610 INF: Z Motor: After move to -0.165722, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:55:31.558 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-17 22:55:31.558 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:55:31.558 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:55:31.558 -07 000000547 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:55:31.558 -07 000000409 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:55:31.558 -07 000000593 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:55:31.558 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:55:31.558 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:55:31.558 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:55:31.558 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:55:31.558 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:55:31.558 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:55:31.558 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:55:31.568 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:55:31.568 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:55:31.568 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:55:31.568 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:55:31.578 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 22:55:31.578 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 22:55:31.578 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 22:55:31.578 -07 000000593 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 22:55:31.588 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 463 463 223 223 36379 150\n [Camera]
17-03-17 22:55:31.788 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:55:32.018 -07 000000429 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:55:32.018 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 68. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1095, R2=1131, Total=2226. Warn if over 250 bubbles per interval.
17-03-17 22:55:32.248 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 655
17-03-17 22:55:32.248 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 655
17-03-17 22:55:32.248 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:55:32.248 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:55:32.248 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 22:55:32.248 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 655
17-03-17 22:55:32.248 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 655
17-03-17 22:55:32.248 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:55:32.258 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:55:32.258 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 22:55:32.438 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36379 848
17-03-17 22:55:32.588 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning grn on 998
17-03-17 22:55:32.628 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 373 ms.
17-03-17 22:55:32.628 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-17 22:55:32.628 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:55:32.628 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 370 ms.
17-03-17 22:55:32.628 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-17 22:55:32.628 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:55:32.628 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:55:32.628 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 22:55:32.628 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:55:32.638 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-17 22:55:32.808 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1221
17-03-17 22:55:32.808 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1221
17-03-17 22:55:32.818 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:55:32.818 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:55:32.818 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 1094749800, 0x0, 391868352) start.
17-03-17 22:55:32.818 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1221
17-03-17 22:55:32.818 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1221
17-03-17 22:55:32.818 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:55:32.818 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:55:32.818 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) start.
17-03-17 22:55:33.008 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP 1414
17-03-17 22:55:33.008 -07 000000502 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:55:33.008 -07 000000610 INF: FPGA: 'CAMDBLSNAP 463 463 223 223 36379 150' command took 2 ms to send, 1411 ms to get response, and 1420 ms overall
17-03-17 22:55:33.198 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 1094749800, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 22:55:33.198 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 22:55:33.198 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:55:33.198 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 22:55:33.198 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 22:55:33.198 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:55:33.198 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:55:33.198 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 22:55:33.198 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-17 22:55:33.198 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:55:33.208 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 22:55:33.238 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 42 ms.
17-03-17 22:55:33.238 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-17 22:55:33.288 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 42 ms.
17-03-17 22:55:33.288 -07 000000610 INF: Move compensator for Bottom-surface imaging.
17-03-17 22:55:33.288 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-17 22:55:33.408 -07 000000623 INF: FPGA: Recv EMCUR 
17-03-17 22:55:33.418 -07 000000610 INF: FPGA: 'EMCUR 80' command took 118 ms to send, 0 ms to get response, and 126 ms overall
17-03-17 22:55:33.418 -07 000000610 INF: FPGA: Xmit EMIN 20 40\n [Compensator]
17-03-17 22:55:33.498 -07 000000448 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 69, FrontChillerTemperature: 3.971733,
17-03-17 22:55:33.918 -07 000000475 INF: FPGA: Recv EMIN
17-03-17 22:55:33.918 -07 000000610 INF: FPGA: 'EMIN 20 40' command took 0 ms to send, 493 ms to get response, and 502 ms overall
17-03-17 22:55:33.918 -07 000000610 INF: FPGA: Xmit EMCUR 60\n [Compensator]
17-03-17 22:55:33.918 -07 000000541 INF: FPGA: Recv EMCUR 
17-03-17 22:55:33.928 -07 000000610 INF: FPGA: 'EMCUR 60' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:55:33.928 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 22:55:33.928 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 74.83203125, Z-Position -0.165729683429102. ------
17-03-17 22:55:33.928 -07 000000501 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.14024 mm
17-03-17 22:55:33.928 -07 000000501 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:55:33.928 -07 000000415 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:55:33.938 -07 000000623 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:55:33.938 -07 000000415 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 22:55:33.938 -07 000000415 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:55:33.938 -07 000000576 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-17 22:55:33.938 -07 000000576 INF: Y Motor: Moving to 59.9126 mm, started at 74.8320 mm, delta = -14.9194 mm
17-03-17 22:55:33.938 -07 000000448 INF: Z Motor: Entering MoveAbsStepped (DAC = 30635, sync = True, waitForSettling = False)
17-03-17 22:55:33.938 -07 000000448 INF: Z Motor: Moving to -0.140238 mm, started at -0.165730 mm, distance = 25.49 um
17-03-17 22:55:33.948 -07 000000448 INF: FPGA: Xmit ZDACW 30635\n [Z Motor]
17-03-17 22:55:33.948 -07 000000618 INF: FPGA: Recv ZDACW
17-03-17 22:55:33.958 -07 000000448 INF: FPGA: 'ZDACW 30635' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 22:55:33.958 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:55:33.958 -07 000000478 INF: FPGA: Recv YRDPOS 153258
17-03-17 22:55:33.968 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 22:55:33.968 -07 000000576 INF: Y Motor: Encoder = 153258 = motor step 119732.8 = 74.8330 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:55:33.968 -07 000000448 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:55:33.968 -07 000000482 INF: FPGA: Recv ZDACR 30635
17-03-17 22:55:33.968 -07 000000576 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = -14.9400 mm (-23904.0 steps). UsingTableMove = False
17-03-17 22:55:33.968 -07 000000576 INF: Y Motor: Moving to 122701 encoder counts
17-03-17 22:55:33.978 -07 000000448 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:55:33.978 -07 000000448 INF: Z Motor: MoveAbsStepped took 36 ms (did NOT wait for settling yet))
17-03-17 22:55:33.978 -07 000000576 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-17 22:55:34.138 -07 000000482 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:55:34.138 -07 000000415 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 202 ms overall
17-03-17 22:55:35.598 -07 000000502 INF: FPGA: Recv YMVTO 122703 23904
17-03-17 22:55:35.598 -07 000000576 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1618 ms to get response, and 1634 ms overall
17-03-17 22:55:35.598 -07 000000576 INF: Y Motor: Position error before settling = 2 encoder counts (0.001 mm)
17-03-17 22:55:35.598 -07 000000576 INF: Y Motor: To move from 74.833 to 59.913 (-14.919 mm) should take 23873 steps, but required 23904 steps (14.940 mm). Slippage = 0.019 mm (0.00%).
17-03-17 22:55:35.598 -07 000000576 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1634 ms, distance = 14.919 mm, average velocity = 9.131 mm/sec
17-03-17 22:55:37.018 -07 000000448 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:55:37.018 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 68. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1095, R2=1131, Total=2226. Warn if over 250 bubbles per interval.
17-03-17 22:55:38.448 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:55:38.448 -07 000000502 INF: FPGA: Recv YRDPOS 122698
17-03-17 22:55:38.458 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:55:38.458 -07 000000576 INF: Y Motor: Encoder = 122698 = motor step 95857.8 = 59.9111 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:55:38.488 -07 000000576 INF: Y Motor: After move to 59.912609, error = -0.001476, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:55:38.488 -07 000000576 INF: Y Motor: Position error after settling = -3 encoder counts (-0.001 mm), Delta during settling = -5 counts (-0.002 mm)
17-03-17 22:55:38.488 -07 000000576 INF: Y Motor: Moved to 59.9111 after 4552 ms
17-03-17 22:55:38.488 -07 000000501 INF: Z Motor: EndOfMoveAbsStepped: target = -0.140238 mm (DAC = 30635)
17-03-17 22:55:38.488 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:38.498 -07 000000382 INF: FPGA: Recv ZSGSRD 31124
17-03-17 22:55:38.498 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-17 22:55:38.498 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:38.498 -07 000000415 INF: FPGA: Recv ZSGSRD 31121
17-03-17 22:55:38.508 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:55:38.508 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:38.508 -07 000000448 INF: FPGA: Recv ZSGSRD 31118
17-03-17 22:55:38.518 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:38.518 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:38.518 -07 000000593 INF: FPGA: Recv ZSGSRD 31119
17-03-17 22:55:38.528 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:38.528 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:38.528 -07 000000482 INF: FPGA: Recv ZSGSRD 31118
17-03-17 22:55:38.538 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:38.548 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:38.548 -07 000000502 INF: FPGA: Recv ZSGSRD 31121
17-03-17 22:55:38.558 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:55:38.558 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:38.558 -07 000000462 INF: FPGA: Recv ZSGSRD 31112
17-03-17 22:55:38.568 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:38.568 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:38.568 -07 000000409 INF: FPGA: Recv ZSGSRD 31120
17-03-17 22:55:38.578 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:38.578 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:38.578 -07 000000382 INF: FPGA: Recv ZSGSRD 31120
17-03-17 22:55:38.588 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:38.588 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:38.588 -07 000000482 INF: FPGA: Recv ZSGSRD 31125
17-03-17 22:55:38.598 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:38.598 -07 000000501 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:55:38.598 -07 000000475 INF: FPGA: Recv ZPIEZORD 26765
17-03-17 22:55:38.608 -07 000000501 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:38.608 -07 000000501 INF: Z Motor: Piezo is near 37.2 V (nominally 0 to 100 V), expect near 46.7 V, since DAC is at 4.675 V. Piezo Error = -9.6 V.
17-03-17 22:55:38.608 -07 000000501 INF: Z Motor: ReadAdcAverage: Commanded Z = -140.2 um, Read 10 ADC samples: Avg = 31120 (-139.4 uncal um), Error = 0.8 uncal um, Median = 31120 (-139.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 31112 (-139.4 uncal um), Max = 31125 (-139.5 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 22:55:38.608 -07 000000501 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31120, posNoise = 5, negNoise = 8
17-03-17 22:55:38.608 -07 000000501 INF: Z Motor: After move to -0.140238, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:55:38.608 -07 000000501 INF: Z Motor: Settle wait time = 4555 ms, measure time = 111 ms (allowed 150 ms), total time = 4666 ms
17-03-17 22:55:38.608 -07 000000501 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-17 22:55:38.648 -07 000000501 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4713 ms
17-03-17 22:55:38.648 -07 000000501 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:55:38.648 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:55:38.648 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:55:38.648 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:55:38.648 -07 000000541 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:55:38.648 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:55:38.648 -07 000000623 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:55:38.648 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 22:55:38.648 -07 000000541 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-17 22:55:38.668 -07 000000541 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 20 ms.
17-03-17 22:55:38.668 -07 000000541 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:55:38.678 -07 000000541 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:55:38.678 -07 000000541 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:55:38.678 -07 000000541 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 8 ms.
17-03-17 22:55:38.678 -07 000000541 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 32 ms.
17-03-17 22:55:38.688 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:55:38.728 -07 000000502 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:55:38.858 -07 000000415 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 69, FrontChillerTemperature: 4.019446,
17-03-17 22:55:38.928 -07 000000415 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:55:38.928 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:55:38.928 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:55:38.928 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 22:55:38.968 -07 000000462 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:55:38.968 -07 000000486 INF: FPGA: Recv CAMSNAP
17-03-17 22:55:38.968 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 284 ms overall
17-03-17 22:55:39.048 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 22:55:39.048 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:55:39.048 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:55:39.048 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-17 22:55:39.068 -07 000000409 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:55:39.068 -07 000000429 INF: Image SNR check: start
17-03-17 22:55:39.068 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:55:39.078 -07 000000409 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:55:39.078 -07 000000409 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:55:39.078 -07 000000429 INF: Image SNR check: pass  [peak (Max-Min)=53.30]
17-03-17 22:55:39.078 -07 000000429 INF: Autofocus start
17-03-17 22:55:39.078 -07 000000429 INF: MeasureProfile start
17-03-17 22:55:39.098 -07 000000429 INF: MeasureProfile done
17-03-17 22:55:39.098 -07 000000429 INF: X=0  Z correction [um]=-0.02394831
17-03-17 22:55:39.098 -07 000000429 INF: Autofocus finished
17-03-17 22:55:39.278 -07 000000551 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:55:39.278 -07 000000409 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:55:39.278 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.9111328125, Z-position -0.140244833862736. ----------
17-03-17 22:55:39.278 -07 000000610 INF: Cycle	69	Tile	1	Exposure Settings		A	463	G	223	T	223	C	463
17-03-17 22:55:39.288 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 29142, sync = True, waitForSettling = True)
17-03-17 22:55:39.288 -07 000000610 INF: Z Motor: Moving to -0.133404 mm, started at -0.140245 mm, distance = 6.84 um
17-03-17 22:55:39.288 -07 000000610 INF: FPGA: Xmit ZDACW 29142\n [Z Motor]
17-03-17 22:55:39.288 -07 000000462 INF: FPGA: Recv ZDACW
17-03-17 22:55:39.298 -07 000000610 INF: FPGA: 'ZDACW 29142' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:55:39.298 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:55:39.298 -07 000000429 INF: FPGA: Recv ZDACR 29142
17-03-17 22:55:39.308 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:39.308 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:55:39.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:39.458 -07 000000576 INF: FPGA: Recv ZSGSRD 30053
17-03-17 22:55:39.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:55:39.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:39.468 -07 000000415 INF: FPGA: Recv ZSGSRD 30054
17-03-17 22:55:39.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:39.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:39.478 -07 000000593 INF: FPGA: Recv ZSGSRD 30059
17-03-17 22:55:39.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:39.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:39.488 -07 000000502 INF: FPGA: Recv ZSGSRD 30053
17-03-17 22:55:39.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:39.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:39.498 -07 000000501 INF: FPGA: Recv ZSGSRD 30058
17-03-17 22:55:39.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:39.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:39.508 -07 000000448 INF: FPGA: Recv ZSGSRD 30060
17-03-17 22:55:39.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:39.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:39.518 -07 000000475 INF: FPGA: Recv ZSGSRD 30054
17-03-17 22:55:39.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:39.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:39.528 -07 000000482 INF: FPGA: Recv ZSGSRD 30055
17-03-17 22:55:39.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:39.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:39.538 -07 000000627 INF: FPGA: Recv ZSGSRD 30057
17-03-17 22:55:39.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:39.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:39.548 -07 000000501 INF: FPGA: Recv ZSGSRD 30055
17-03-17 22:55:39.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:39.558 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:55:39.558 -07 000000576 INF: FPGA: Recv ZPIEZORD 25569
17-03-17 22:55:39.568 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:39.568 -07 000000610 INF: Z Motor: Piezo is near 34.6 V (nominally 0 to 100 V), expect near 44.5 V, since DAC is at 4.447 V. Piezo Error = -9.8 V.
17-03-17 22:55:39.568 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.4 um, Read 10 ADC samples: Avg = 30056 (-132.6 uncal um), Error = 0.8 uncal um, Median = 30055 (-132.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 30053 (-132.6 uncal um), Max = 30060 (-132.6 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 22:55:39.568 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30056, posNoise = 4, negNoise = 3
17-03-17 22:55:39.568 -07 000000610 INF: Z Motor: After move to -0.133404, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:55:39.568 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 22:55:39.568 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:55:39.568 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:55:39.568 -07 000000593 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:55:39.568 -07 000000547 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:55:39.568 -07 000000429 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:55:39.568 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:55:39.568 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:55:39.568 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:55:39.568 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:55:39.568 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:55:39.568 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:55:39.568 -07 000000501 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-17 22:55:39.578 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 22:55:39.578 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:55:39.588 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 19 ms.
17-03-17 22:55:39.598 -07 000000429 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 23 ms.
17-03-17 22:55:39.598 -07 000000501 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 24 ms.
17-03-17 22:55:39.598 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:55:39.598 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 22:55:39.598 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:55:39.608 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 22:55:39.608 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 39 ms.
17-03-17 22:55:39.608 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 463 463 223 223 29319 150\n [Camera]
17-03-17 22:55:39.808 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:55:40.278 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 655
17-03-17 22:55:40.278 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 655
17-03-17 22:55:40.278 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:55:40.278 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 655
17-03-17 22:55:40.278 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 655
17-03-17 22:55:40.278 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:55:40.278 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:55:40.278 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 22:55:40.278 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:55:40.278 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 22:55:40.468 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29319 848
17-03-17 22:55:40.618 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP turning grn on 998
17-03-17 22:55:40.668 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 391 ms.
17-03-17 22:55:40.668 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 22:55:40.668 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:55:40.668 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 389 ms.
17-03-17 22:55:40.678 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 22:55:40.678 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:55:40.678 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 22:55:40.678 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 22:55:40.678 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:55:40.688 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-17 22:55:40.838 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1221
17-03-17 22:55:40.838 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1221
17-03-17 22:55:40.838 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:55:40.838 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1221
17-03-17 22:55:40.838 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1221
17-03-17 22:55:40.848 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:55:40.848 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1094749800, 0x0, 391868352) start.
17-03-17 22:55:40.848 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:55:40.848 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:55:40.848 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) start.
17-03-17 22:55:41.028 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP 1414
17-03-17 22:55:41.028 -07 000000541 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:55:41.028 -07 000000610 INF: FPGA: 'CAMDBLSNAP 463 463 223 223 29319 150' command took 2 ms to send, 1408 ms to get response, and 1420 ms overall
17-03-17 22:55:41.038 -07 000000610 INF: Skipping AutoFocus in Tile 2: adopting Best-Z from the cache: -0.133572
17-03-17 22:55:41.038 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.13357 mm
17-03-17 22:55:41.038 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:55:41.038 -07 000000502 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-17 22:55:41.038 -07 000000502 INF: Y Motor: Moving to 60.7426 mm, started at 59.9111 mm, delta = 0.8315 mm
17-03-17 22:55:41.038 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:55:41.038 -07 000000551 INF: Z Motor: Entering MoveAbsStepped (DAC = 29179, sync = True, waitForSettling = False)
17-03-17 22:55:41.038 -07 000000551 INF: Z Motor: Moving to -0.133573 mm, started at -0.133409 mm, distance = -0.16 um
17-03-17 22:55:41.038 -07 000000429 INF: FPGA: Recv YRDPOS 122698
17-03-17 22:55:41.048 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:55:41.048 -07 000000502 INF: Y Motor: Encoder = 122698 = motor step 95857.8 = 59.9111 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:55:41.048 -07 000000551 INF: FPGA: Xmit ZDACW 29179\n [Z Motor]
17-03-17 22:55:41.048 -07 000000502 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:55:41.048 -07 000000502 INF: Y Motor: Moving 1330 steps2
17-03-17 22:55:41.048 -07 000000576 INF: FPGA: Recv ZDACW
17-03-17 22:55:41.058 -07 000000551 INF: FPGA: 'ZDACW 29179' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 22:55:41.058 -07 000000551 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:55:41.058 -07 000000547 INF: FPGA: Recv ZDACR 29179
17-03-17 22:55:41.068 -07 000000551 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:41.068 -07 000000551 INF: Z Motor: MoveAbsStepped took 25 ms (did NOT wait for settling yet))
17-03-17 22:55:41.068 -07 000000502 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:55:41.228 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) end. Duration was 389 ms.
17-03-17 22:55:41.238 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 22:55:41.238 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:55:41.238 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1094749800, 0x0, 391868352) end. Duration was 390 ms.
17-03-17 22:55:41.238 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 22:55:41.238 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:55:41.238 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:55:41.238 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:55:41.238 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 22:55:41.248 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-17 22:55:41.438 -07 000000618 INF: FPGA: Recv YMVTILE
17-03-17 22:55:41.438 -07 000000502 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 259 ms to get response, and 397 ms overall
17-03-17 22:55:41.478 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:55:41.478 -07 000000551 INF: FPGA: Recv YRDPOS 124381
17-03-17 22:55:41.488 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:55:41.488 -07 000000502 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:55:41.488 -07 000000502 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-17 22:55:41.488 -07 000000502 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.831 mm, average velocity = 2.089 mm/sec
17-03-17 22:55:42.018 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:55:42.018 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 68. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1095, R2=1131, Total=2226. Warn if over 250 bubbles per interval.
17-03-17 22:55:42.438 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:55:42.438 -07 000000382 INF: FPGA: Recv YRDPOS 124381
17-03-17 22:55:42.448 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:55:42.448 -07 000000502 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:55:42.468 -07 000000502 INF: Y Motor: After move to 60.742607, error = -0.009697, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:55:42.468 -07 000000502 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:55:42.468 -07 000000502 INF: Y Motor: Moved to 60.7329 after 1433 ms (table move)
17-03-17 22:55:42.468 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.133573 mm (DAC = 29179)
17-03-17 22:55:42.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:42.478 -07 000000576 INF: FPGA: Recv ZSGSRD 30077
17-03-17 22:55:42.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:42.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:42.488 -07 000000501 INF: FPGA: Recv ZSGSRD 30088
17-03-17 22:55:42.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:42.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:42.498 -07 000000448 INF: FPGA: Recv ZSGSRD 30090
17-03-17 22:55:42.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:42.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:42.508 -07 000000478 INF: FPGA: Recv ZSGSRD 30083
17-03-17 22:55:42.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:42.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:42.518 -07 000000623 INF: FPGA: Recv ZSGSRD 30079
17-03-17 22:55:42.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:42.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:42.528 -07 000000551 INF: FPGA: Recv ZSGSRD 30081
17-03-17 22:55:42.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:42.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:42.538 -07 000000482 INF: FPGA: Recv ZSGSRD 30081
17-03-17 22:55:42.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:42.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:42.548 -07 000000415 INF: FPGA: Recv ZSGSRD 30082
17-03-17 22:55:42.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:42.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:42.558 -07 000000462 INF: FPGA: Recv ZSGSRD 30081
17-03-17 22:55:42.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:42.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:42.568 -07 000000541 INF: FPGA: Recv ZSGSRD 30087
17-03-17 22:55:42.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:42.578 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:55:42.578 -07 000000618 INF: FPGA: Recv ZPIEZORD 25677
17-03-17 22:55:42.588 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:42.588 -07 000000610 INF: Z Motor: Piezo is near 34.9 V (nominally 0 to 100 V), expect near 44.5 V, since DAC is at 4.452 V. Piezo Error = -9.7 V.
17-03-17 22:55:42.588 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.6 um, Read 10 ADC samples: Avg = 30083 (-132.8 uncal um), Error = 0.8 uncal um, Median = 30082 (-132.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30077 (-132.8 uncal um), Max = 30090 (-132.8 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 22:55:42.588 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30083, posNoise = 7, negNoise = 6
17-03-17 22:55:42.588 -07 000000610 INF: Z Motor: After move to -0.133573, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:55:42.588 -07 000000610 INF: Z Motor: Settle wait time = 1436 ms, measure time = 110 ms (allowed 150 ms), total time = 1546 ms
17-03-17 22:55:42.588 -07 000000610 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-17 22:55:42.628 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1589 ms
17-03-17 22:55:42.628 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:55:42.628 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.73291015625, Z-position -0.13358292587173. ----------
17-03-17 22:55:42.628 -07 000000610 INF: Cycle	69	Tile	2	Exposure Settings		A	463	G	223	T	223	C	463
17-03-17 22:55:42.628 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 29002, sync = True, waitForSettling = True)
17-03-17 22:55:42.628 -07 000000610 INF: Z Motor: Moving to -0.132763 mm, started at -0.133583 mm, distance = 0.82 um
17-03-17 22:55:42.628 -07 000000610 INF: FPGA: Xmit ZDACW 29002\n [Z Motor]
17-03-17 22:55:42.628 -07 000000475 INF: FPGA: Recv ZDACW
17-03-17 22:55:42.638 -07 000000610 INF: FPGA: 'ZDACW 29002' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 22:55:42.638 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:55:42.638 -07 000000551 INF: FPGA: Recv ZDACR 29002
17-03-17 22:55:42.648 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:42.648 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:55:42.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:42.798 -07 000000462 INF: FPGA: Recv ZSGSRD 29958
17-03-17 22:55:42.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:55:42.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:42.808 -07 000000627 INF: FPGA: Recv ZSGSRD 29957
17-03-17 22:55:42.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:42.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:42.818 -07 000000502 INF: FPGA: Recv ZSGSRD 29966
17-03-17 22:55:42.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:42.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:42.828 -07 000000482 INF: FPGA: Recv ZSGSRD 29955
17-03-17 22:55:42.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:42.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:42.838 -07 000000541 INF: FPGA: Recv ZSGSRD 29954
17-03-17 22:55:42.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:42.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:42.848 -07 000000547 INF: FPGA: Recv ZSGSRD 29962
17-03-17 22:55:42.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:42.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:42.858 -07 000000627 INF: FPGA: Recv ZSGSRD 29956
17-03-17 22:55:42.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:42.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:42.868 -07 000000618 INF: FPGA: Recv ZSGSRD 29955
17-03-17 22:55:42.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:42.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:42.878 -07 000000409 INF: FPGA: Recv ZSGSRD 29955
17-03-17 22:55:42.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:42.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:42.888 -07 000000415 INF: FPGA: Recv ZSGSRD 29956
17-03-17 22:55:42.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:42.898 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:55:42.898 -07 000000429 INF: FPGA: Recv ZPIEZORD 25500
17-03-17 22:55:42.908 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:42.908 -07 000000610 INF: Z Motor: Piezo is near 34.5 V (nominally 0 to 100 V), expect near 44.3 V, since DAC is at 4.425 V. Piezo Error = -9.8 V.
17-03-17 22:55:42.908 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.8 um, Read 10 ADC samples: Avg = 29957 (-132.0 uncal um), Error = 0.8 uncal um, Median = 29956 (-132.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29954 (-132.0 uncal um), Max = 29966 (-132.0 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 22:55:42.908 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29957, posNoise = 9, negNoise = 3
17-03-17 22:55:42.908 -07 000000610 INF: Z Motor: After move to -0.132763, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:55:42.908 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 22:55:42.908 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:55:42.908 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:55:42.908 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:55:42.908 -07 000000623 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:55:42.908 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:55:42.908 -07 000000415 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:55:42.908 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:55:42.908 -07 000000551 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:55:42.908 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:55:42.908 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:55:42.908 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:55:42.908 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:55:42.918 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 22:55:42.918 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:55:42.918 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:55:42.918 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:55:42.928 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 22:55:42.928 -07 000000623 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 22:55:42.928 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 22:55:42.928 -07 000000415 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 22:55:42.928 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 463 463 223 223 29179 150\n [Camera]
17-03-17 22:55:43.128 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:55:43.598 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 655
17-03-17 22:55:43.598 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 655
17-03-17 22:55:43.598 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:55:43.598 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 655
17-03-17 22:55:43.598 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 655
17-03-17 22:55:43.598 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:55:43.598 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:55:43.598 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 22:55:43.608 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:55:43.608 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 22:55:43.788 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29179 848
17-03-17 22:55:43.938 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning grn on 998
17-03-17 22:55:43.998 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 396 ms.
17-03-17 22:55:43.998 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 22:55:43.998 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:55:43.998 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 396 ms.
17-03-17 22:55:43.998 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 22:55:43.998 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:55:43.998 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:55:43.998 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 22:55:44.008 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:55:44.008 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-17 22:55:44.168 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1221
17-03-17 22:55:44.168 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1221
17-03-17 22:55:44.168 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:55:44.168 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1221
17-03-17 22:55:44.168 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1221
17-03-17 22:55:44.168 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:55:44.168 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-17 22:55:44.168 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:55:44.168 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:55:44.168 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 1165594328, 0x0, 418435064) start.
17-03-17 22:55:44.218 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 69, FrontChillerTemperature: 4.027603,
17-03-17 22:55:44.358 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP 1417
17-03-17 22:55:44.358 -07 000000382 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:55:44.358 -07 000000610 INF: FPGA: 'CAMDBLSNAP 463 463 223 223 29179 150' command took 2 ms to send, 1413 ms to get response, and 1424 ms overall
17-03-17 22:55:44.358 -07 000000610 INF: Skipping AutoFocus in Tile 3: adopting Best-Z from the cache: -0.133449
17-03-17 22:55:44.358 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.13345 mm
17-03-17 22:55:44.358 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:55:44.358 -07 000000409 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-17 22:55:44.358 -07 000000409 INF: Y Motor: Moving to 61.5726 mm, started at 60.7329 mm, delta = 0.8397 mm
17-03-17 22:55:44.358 -07 000000409 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:55:44.358 -07 000000486 INF: Z Motor: Entering MoveAbsStepped (DAC = 29152, sync = True, waitForSettling = False)
17-03-17 22:55:44.358 -07 000000486 INF: Z Motor: Moving to -0.133449 mm, started at -0.132773 mm, distance = -0.68 um
17-03-17 22:55:44.368 -07 000000486 INF: FPGA: Xmit ZDACW 29152\n [Z Motor]
17-03-17 22:55:44.368 -07 000000502 INF: FPGA: Recv YRDPOS 124381
17-03-17 22:55:44.368 -07 000000409 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 22:55:44.368 -07 000000409 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:55:44.368 -07 000000409 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:55:44.368 -07 000000409 INF: Y Motor: Moving 1344 steps-20
17-03-17 22:55:44.368 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 22:55:44.378 -07 000000486 INF: FPGA: 'ZDACW 29152' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 22:55:44.378 -07 000000486 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:55:44.378 -07 000000382 INF: FPGA: Recv ZDACR 29152
17-03-17 22:55:44.388 -07 000000486 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:44.388 -07 000000486 INF: Z Motor: MoveAbsStepped took 21 ms (did NOT wait for settling yet))
17-03-17 22:55:44.388 -07 000000409 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:55:44.568 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 1165594328, 0x0, 418435064) end. Duration was 392 ms.
17-03-17 22:55:44.568 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 22:55:44.568 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:55:44.568 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 394 ms.
17-03-17 22:55:44.568 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 22:55:44.568 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:55:44.568 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:55:44.568 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:55:44.568 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 22:55:44.578 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-17 22:55:44.768 -07 000000448 INF: FPGA: Recv YMVTILE
17-03-17 22:55:44.768 -07 000000409 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 398 ms overall
17-03-17 22:55:44.808 -07 000000409 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:55:44.808 -07 000000576 INF: FPGA: Recv YRDPOS 126083
17-03-17 22:55:44.818 -07 000000409 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:44.818 -07 000000409 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:55:44.818 -07 000000409 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-17 22:55:44.818 -07 000000409 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 399 ms, distance = 0.840 mm, average velocity = 2.105 mm/sec
17-03-17 22:55:45.768 -07 000000409 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:55:45.768 -07 000000593 INF: FPGA: Recv YRDPOS 126083
17-03-17 22:55:45.778 -07 000000409 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:55:45.778 -07 000000409 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:55:45.798 -07 000000409 INF: Y Motor: After move to 61.572609, error = -0.008644, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:55:45.798 -07 000000409 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:55:45.798 -07 000000409 INF: Y Motor: Moved to 61.5640 after 1438 ms (table move)
17-03-17 22:55:45.798 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.133449 mm (DAC = 29152)
17-03-17 22:55:45.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:45.808 -07 000000486 INF: FPGA: Recv ZSGSRD 30074
17-03-17 22:55:45.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-17 22:55:45.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:45.808 -07 000000429 INF: FPGA: Recv ZSGSRD 30060
17-03-17 22:55:45.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:55:45.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:45.818 -07 000000462 INF: FPGA: Recv ZSGSRD 30066
17-03-17 22:55:45.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:45.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:45.828 -07 000000593 INF: FPGA: Recv ZSGSRD 30065
17-03-17 22:55:45.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:45.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:45.838 -07 000000409 INF: FPGA: Recv ZSGSRD 30067
17-03-17 22:55:45.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:45.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:45.848 -07 000000551 INF: FPGA: Recv ZSGSRD 30062
17-03-17 22:55:45.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:45.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:45.858 -07 000000475 INF: FPGA: Recv ZSGSRD 30056
17-03-17 22:55:45.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:45.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:45.868 -07 000000482 INF: FPGA: Recv ZSGSRD 30056
17-03-17 22:55:45.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:45.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:45.878 -07 000000547 INF: FPGA: Recv ZSGSRD 30064
17-03-17 22:55:45.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:45.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:45.888 -07 000000478 INF: FPGA: Recv ZSGSRD 30069
17-03-17 22:55:45.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:45.898 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:55:45.898 -07 000000502 INF: FPGA: Recv ZPIEZORD 25683
17-03-17 22:55:45.908 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:45.908 -07 000000610 INF: Z Motor: Piezo is near 34.9 V (nominally 0 to 100 V), expect near 44.5 V, since DAC is at 4.448 V. Piezo Error = -9.6 V.
17-03-17 22:55:45.908 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.4 um, Read 10 ADC samples: Avg = 30064 (-132.7 uncal um), Error = 0.8 uncal um, Median = 30064 (-132.7 uncal um), StdDev = 6 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 30056 (-132.6 uncal um), Max = 30074 (-132.7 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 22:55:45.908 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30064, posNoise = 10, negNoise = 8
17-03-17 22:55:45.908 -07 000000610 INF: Z Motor: After move to -0.133449, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:55:45.908 -07 000000610 INF: Z Motor: Settle wait time = 1440 ms, measure time = 102 ms (allowed 150 ms), total time = 1542 ms
17-03-17 22:55:45.908 -07 000000610 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 22:55:45.958 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1594 ms
17-03-17 22:55:45.958 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:55:45.958 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.56396484375, Z-position -0.133460865841036. ----------
17-03-17 22:55:45.958 -07 000000610 INF: Cycle	69	Tile	3	Exposure Settings		A	463	G	223	T	223	C	463
17-03-17 22:55:45.958 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28975, sync = True, waitForSettling = True)
17-03-17 22:55:45.958 -07 000000610 INF: Z Motor: Moving to -0.132639 mm, started at -0.133461 mm, distance = 0.82 um
17-03-17 22:55:45.958 -07 000000610 INF: FPGA: Xmit ZDACW 28975\n [Z Motor]
17-03-17 22:55:45.968 -07 000000475 INF: FPGA: Recv ZDACW
17-03-17 22:55:45.968 -07 000000610 INF: FPGA: 'ZDACW 28975' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 22:55:45.968 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:55:45.968 -07 000000482 INF: FPGA: Recv ZDACR 28975
17-03-17 22:55:45.978 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:45.978 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:55:46.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:46.128 -07 000000576 INF: FPGA: Recv ZSGSRD 29942
17-03-17 22:55:46.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:55:46.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:46.138 -07 000000478 INF: FPGA: Recv ZSGSRD 29941
17-03-17 22:55:46.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:46.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:46.148 -07 000000501 INF: FPGA: Recv ZSGSRD 29936
17-03-17 22:55:46.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:46.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:46.158 -07 000000541 INF: FPGA: Recv ZSGSRD 29930
17-03-17 22:55:46.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:46.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:46.168 -07 000000409 INF: FPGA: Recv ZSGSRD 29932
17-03-17 22:55:46.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:46.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:46.178 -07 000000576 INF: FPGA: Recv ZSGSRD 29942
17-03-17 22:55:46.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:46.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:46.188 -07 000000415 INF: FPGA: Recv ZSGSRD 29932
17-03-17 22:55:46.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:46.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:46.198 -07 000000486 INF: FPGA: Recv ZSGSRD 29944
17-03-17 22:55:46.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:46.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:46.208 -07 000000475 INF: FPGA: Recv ZSGSRD 29940
17-03-17 22:55:46.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:46.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:46.218 -07 000000482 INF: FPGA: Recv ZSGSRD 29937
17-03-17 22:55:46.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:46.228 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:55:46.228 -07 000000551 INF: FPGA: Recv ZPIEZORD 25531
17-03-17 22:55:46.238 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:46.238 -07 000000610 INF: Z Motor: Piezo is near 34.5 V (nominally 0 to 100 V), expect near 44.2 V, since DAC is at 4.421 V. Piezo Error = -9.7 V.
17-03-17 22:55:46.238 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.6 um, Read 10 ADC samples: Avg = 29938 (-131.9 uncal um), Error = 0.8 uncal um, Median = 29938 (-131.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 29930 (-131.8 uncal um), Max = 29944 (-131.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 22:55:46.238 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29938, posNoise = 6, negNoise = 8
17-03-17 22:55:46.238 -07 000000610 INF: Z Motor: After move to -0.132639, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:55:46.238 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-17 22:55:46.238 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:55:46.238 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:55:46.238 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:55:46.238 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:55:46.238 -07 000000482 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:55:46.238 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:55:46.238 -07 000000409 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:55:46.238 -07 000000409 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:55:46.238 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:55:46.238 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:55:46.238 -07 000000409 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:55:46.238 -07 000000409 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:55:46.248 -07 000000409 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 22:55:46.248 -07 000000409 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:55:46.248 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:55:46.248 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:55:46.258 -07 000000409 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 22:55:46.258 -07 000000409 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 22:55:46.258 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 22:55:46.258 -07 000000482 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 22:55:46.258 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 463 463 223 223 29152 150\n [Camera]
17-03-17 22:55:46.458 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:55:46.918 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 655
17-03-17 22:55:46.918 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 655
17-03-17 22:55:46.918 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:55:46.928 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:55:46.928 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 22:55:46.928 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 655
17-03-17 22:55:46.928 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 655
17-03-17 22:55:46.928 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:55:46.928 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:55:46.928 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 22:55:47.018 -07 000000541 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:55:47.018 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 68. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1095, R2=1131, Total=2226. Warn if over 250 bubbles per interval.
17-03-17 22:55:47.118 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29152 848
17-03-17 22:55:47.268 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1000
17-03-17 22:55:47.298 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 22:55:47.298 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-17 22:55:47.298 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:55:47.298 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 22:55:47.298 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-17 22:55:47.298 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:55:47.308 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:55:47.308 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 22:55:47.308 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:55:47.318 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 22:55:47.488 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1221
17-03-17 22:55:47.488 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1221
17-03-17 22:55:47.488 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:55:47.488 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:55:47.488 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-17 22:55:47.488 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1221
17-03-17 22:55:47.488 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1221
17-03-17 22:55:47.488 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:55:47.488 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:55:47.488 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 22:55:47.678 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP 1414
17-03-17 22:55:47.678 -07 000000547 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:55:47.678 -07 000000610 INF: FPGA: 'CAMDBLSNAP 463 463 223 223 29152 150' command took 2 ms to send, 1416 ms to get response, and 1423 ms overall
17-03-17 22:55:47.678 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 22:55:47.678 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.56396484375, Z-Position -0.132651415111175. ------
17-03-17 22:55:47.688 -07 000000576 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.13906 mm
17-03-17 22:55:47.688 -07 000000576 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:55:47.688 -07 000000623 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:55:47.688 -07 000000551 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-17 22:55:47.688 -07 000000551 INF: Y Motor: Moving to 62.4026 mm, started at 61.5640 mm, delta = 0.8386 mm
17-03-17 22:55:47.688 -07 000000462 INF: Z Motor: Entering MoveAbsStepped (DAC = 30379, sync = True, waitForSettling = False)
17-03-17 22:55:47.688 -07 000000462 INF: Z Motor: Moving to -0.139066 mm, started at -0.132651 mm, distance = -6.41 um
17-03-17 22:55:47.688 -07 000000409 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:55:47.698 -07 000000623 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:55:47.698 -07 000000623 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:55:47.708 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:55:47.708 -07 000000429 INF: FPGA: Recv YRDPOS 126083
17-03-17 22:55:47.718 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-17 22:55:47.718 -07 000000551 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:55:47.718 -07 000000551 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:55:47.718 -07 000000551 INF: Y Motor: Moving 1342 steps-18
17-03-17 22:55:47.718 -07 000000462 INF: FPGA: Xmit ZDACW 30379\n [Z Motor]
17-03-17 22:55:47.718 -07 000000593 INF: FPGA: Recv ZDACW
17-03-17 22:55:47.728 -07 000000462 INF: FPGA: 'ZDACW 30379' command took 1 ms to send, 0 ms to get response, and 32 ms overall
17-03-17 22:55:47.728 -07 000000462 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:55:47.728 -07 000000618 INF: FPGA: Recv ZDACR 30379
17-03-17 22:55:47.738 -07 000000551 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:55:47.738 -07 000000462 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:47.738 -07 000000462 INF: Z Motor: MoveAbsStepped took 43 ms (did NOT wait for settling yet))
17-03-17 22:55:47.868 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 379 ms.
17-03-17 22:55:47.868 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 22:55:47.868 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:55:47.868 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 22:55:47.868 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 22:55:47.868 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:55:47.878 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:55:47.878 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 22:55:47.878 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:55:47.888 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 22:55:47.898 -07 000000409 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:55:47.898 -07 000000623 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:55:48.108 -07 000000475 INF: FPGA: Recv YMVTILE
17-03-17 22:55:48.108 -07 000000551 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 22:55:48.178 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:55:48.188 -07 000000429 INF: FPGA: Recv YRDPOS 127786
17-03-17 22:55:48.188 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 22:55:48.188 -07 000000551 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:55:48.188 -07 000000551 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-17 22:55:48.188 -07 000000551 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.839 mm, average velocity = 2.107 mm/sec
17-03-17 22:55:49.138 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:55:49.138 -07 000000501 INF: FPGA: Recv YRDPOS 127786
17-03-17 22:55:49.148 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:49.148 -07 000000551 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:55:49.168 -07 000000551 INF: Y Motor: After move to 62.402607, error = -0.007099, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:55:49.168 -07 000000551 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:55:49.168 -07 000000551 INF: Y Motor: Moved to 62.3955 after 1478 ms (table move)
17-03-17 22:55:49.168 -07 000000576 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139066 mm (DAC = 30379)
17-03-17 22:55:49.168 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:49.178 -07 000000547 INF: FPGA: Recv ZSGSRD 30937
17-03-17 22:55:49.178 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 3 ms to get response, and 5 ms overall
17-03-17 22:55:49.178 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:49.178 -07 000000482 INF: FPGA: Recv ZSGSRD 30929
17-03-17 22:55:49.188 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:55:49.188 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:49.188 -07 000000623 INF: FPGA: Recv ZSGSRD 30935
17-03-17 22:55:49.198 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:49.198 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:49.198 -07 000000502 INF: FPGA: Recv ZSGSRD 30935
17-03-17 22:55:49.208 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:49.208 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:49.208 -07 000000382 INF: FPGA: Recv ZSGSRD 30932
17-03-17 22:55:49.218 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:49.218 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:49.218 -07 000000448 INF: FPGA: Recv ZSGSRD 30940
17-03-17 22:55:49.228 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:49.228 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:49.228 -07 000000475 INF: FPGA: Recv ZSGSRD 30939
17-03-17 22:55:49.238 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:49.238 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:49.238 -07 000000501 INF: FPGA: Recv ZSGSRD 30937
17-03-17 22:55:49.248 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:49.248 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:49.248 -07 000000502 INF: FPGA: Recv ZSGSRD 30944
17-03-17 22:55:49.258 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:49.268 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:49.268 -07 000000475 INF: FPGA: Recv ZSGSRD 30940
17-03-17 22:55:49.278 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:55:49.278 -07 000000576 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:55:49.278 -07 000000547 INF: FPGA: Recv ZPIEZORD 26876
17-03-17 22:55:49.288 -07 000000576 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:49.288 -07 000000576 INF: Z Motor: Piezo is near 37.4 V (nominally 0 to 100 V), expect near 46.4 V, since DAC is at 4.636 V. Piezo Error = -8.9 V.
17-03-17 22:55:49.288 -07 000000576 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.1 um, Read 10 ADC samples: Avg = 30937 (-138.3 uncal um), Error = 0.8 uncal um, Median = 30937 (-138.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30929 (-138.2 uncal um), Max = 30944 (-138.3 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 22:55:49.288 -07 000000576 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30937, posNoise = 7, negNoise = 8
17-03-17 22:55:49.288 -07 000000576 INF: Z Motor: After move to -0.139066, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:55:49.288 -07 000000576 INF: Z Motor: Settle wait time = 1481 ms, measure time = 112 ms (allowed 150 ms), total time = 1593 ms
17-03-17 22:55:49.288 -07 000000576 INF: Z Motor: Waiting extra 38 ms after reading position to reach expected total of 150 ms
17-03-17 22:55:49.328 -07 000000576 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1637 ms
17-03-17 22:55:49.328 -07 000000576 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:55:49.328 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:55:49.328 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:55:49.328 -07 000000486 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:55:49.328 -07 000000475 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:55:49.328 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:55:49.328 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 22:55:49.328 -07 000000475 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:55:49.338 -07 000000482 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:55:49.338 -07 000000475 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:55:49.338 -07 000000475 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:55:49.348 -07 000000475 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-17 22:55:49.348 -07 000000475 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 22:55:49.348 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:55:49.388 -07 000000409 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:55:49.578 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 69, FrontChillerTemperature: 4.039839,
17-03-17 22:55:49.588 -07 000000482 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:55:49.588 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:55:49.588 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:55:49.598 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610341080, 0x0, 559484976) start.
17-03-17 22:55:49.628 -07 000000382 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:55:49.628 -07 000000623 INF: FPGA: Recv CAMSNAP
17-03-17 22:55:49.628 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 285 ms overall
17-03-17 22:55:49.718 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610341080, 0x0, 559484976) end. Duration was 125 ms.
17-03-17 22:55:49.718 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:55:49.718 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:55:49.718 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 127 ms.
17-03-17 22:55:49.738 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:55:49.738 -07 000000547 INF: Autofocus start
17-03-17 22:55:49.738 -07 000000547 INF: MeasureProfile start
17-03-17 22:55:49.738 -07 000000623 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:55:49.748 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 22:55:49.748 -07 000000618 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:55:49.748 -07 000000547 INF: MeasureProfile done
17-03-17 22:55:49.748 -07 000000547 INF: X=-16  Z correction [um]=-0.08128808
17-03-17 22:55:49.748 -07 000000547 INF: Autofocus finished
17-03-17 22:55:49.948 -07 000000478 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:55:49.948 -07 000000618 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 204 ms overall
17-03-17 22:55:49.958 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.3955078125, Z-position -0.139069203040794. ----------
17-03-17 22:55:49.958 -07 000000610 INF: Cycle	69	Tile	4	Exposure Settings		A	463	G	223	T	223	C	463
17-03-17 22:55:49.958 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28873, sync = True, waitForSettling = True)
17-03-17 22:55:49.958 -07 000000610 INF: Z Motor: Moving to -0.132172 mm, started at -0.139069 mm, distance = 6.90 um
17-03-17 22:55:49.978 -07 000000610 INF: FPGA: Xmit ZDACW 28873\n [Z Motor]
17-03-17 22:55:49.978 -07 000000593 INF: FPGA: Recv ZDACW
17-03-17 22:55:49.988 -07 000000610 INF: FPGA: 'ZDACW 28873' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-17 22:55:49.988 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:55:49.988 -07 000000382 INF: FPGA: Recv ZDACR 28873
17-03-17 22:55:49.998 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:49.998 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:55:50.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:50.148 -07 000000475 INF: FPGA: Recv ZSGSRD 29866
17-03-17 22:55:50.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:55:50.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:50.158 -07 000000462 INF: FPGA: Recv ZSGSRD 29862
17-03-17 22:55:50.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:50.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:50.168 -07 000000551 INF: FPGA: Recv ZSGSRD 29870
17-03-17 22:55:50.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:50.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:50.178 -07 000000501 INF: FPGA: Recv ZSGSRD 29866
17-03-17 22:55:50.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:50.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:50.188 -07 000000627 INF: FPGA: Recv ZSGSRD 29863
17-03-17 22:55:50.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:50.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:50.198 -07 000000448 INF: FPGA: Recv ZSGSRD 29868
17-03-17 22:55:50.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:50.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:50.208 -07 000000502 INF: FPGA: Recv ZSGSRD 29862
17-03-17 22:55:50.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:50.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:50.218 -07 000000593 INF: FPGA: Recv ZSGSRD 29865
17-03-17 22:55:50.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:50.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:50.228 -07 000000501 INF: FPGA: Recv ZSGSRD 29865
17-03-17 22:55:50.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:50.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:50.238 -07 000000429 INF: FPGA: Recv ZSGSRD 29861
17-03-17 22:55:50.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:50.248 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:55:50.248 -07 000000475 INF: FPGA: Recv ZPIEZORD 25429
17-03-17 22:55:50.258 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:50.258 -07 000000610 INF: Z Motor: Piezo is near 34.3 V (nominally 0 to 100 V), expect near 44.1 V, since DAC is at 4.406 V. Piezo Error = -9.7 V.
17-03-17 22:55:50.258 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.2 um, Read 10 ADC samples: Avg = 29865 (-131.4 uncal um), Error = 0.8 uncal um, Median = 29865 (-131.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29861 (-131.4 uncal um), Max = 29870 (-131.4 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 22:55:50.258 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29865, posNoise = 5, negNoise = 4
17-03-17 22:55:50.258 -07 000000610 INF: Z Motor: After move to -0.132172, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:55:50.258 -07 000000610 INF: Z Motor: MoveAbsStepped took 298 ms)
17-03-17 22:55:50.258 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:55:50.258 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:55:50.258 -07 000000482 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:55:50.258 -07 000000429 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:55:50.258 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:55:50.258 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:55:50.258 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:55:50.258 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:55:50.258 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:55:50.258 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:55:50.258 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:55:50.258 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:55:50.268 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 22:55:50.268 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:55:50.268 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 22:55:50.268 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:55:50.278 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 22:55:50.278 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 22:55:50.278 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 22:55:50.278 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 22:55:50.288 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 463 463 223 223 29050 150\n [Camera]
17-03-17 22:55:50.478 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:55:50.948 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 655
17-03-17 22:55:50.948 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 655
17-03-17 22:55:50.948 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:55:50.948 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:55:50.948 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start.
17-03-17 22:55:50.948 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 655
17-03-17 22:55:50.948 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 655
17-03-17 22:55:50.948 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:55:50.948 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:55:50.948 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) start.
17-03-17 22:55:51.138 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29050 848
17-03-17 22:55:51.288 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning grn on 998
17-03-17 22:55:51.318 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) end. Duration was 372 ms.
17-03-17 22:55:51.318 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-17 22:55:51.318 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:55:51.328 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 22:55:51.328 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 22:55:51.328 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:55:51.328 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:55:51.328 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:55:51.328 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 22:55:51.338 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-17 22:55:51.508 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1221
17-03-17 22:55:51.508 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1221
17-03-17 22:55:51.518 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:55:51.518 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:55:51.518 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-17 22:55:51.518 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1221
17-03-17 22:55:51.518 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1221
17-03-17 22:55:51.518 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:55:51.518 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:55:51.518 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-17 22:55:51.708 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP 1414
17-03-17 22:55:51.708 -07 000000576 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:55:51.708 -07 000000610 INF: FPGA: 'CAMDBLSNAP 463 463 223 223 29050 150' command took 2 ms to send, 1411 ms to get response, and 1420 ms overall
17-03-17 22:55:51.708 -07 000000610 INF: Skipping AutoFocus in Tile 5: adopting Best-Z from the cache: -0.132930
17-03-17 22:55:51.708 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.13293 mm
17-03-17 22:55:51.708 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:55:51.708 -07 000000502 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-17 22:55:51.708 -07 000000502 INF: Y Motor: Moving to 63.2326 mm, started at 62.3955 mm, delta = 0.8371 mm
17-03-17 22:55:51.708 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:55:51.708 -07 000000409 INF: Z Motor: Entering MoveAbsStepped (DAC = 29038, sync = True, waitForSettling = False)
17-03-17 22:55:51.708 -07 000000409 INF: Z Motor: Moving to -0.132927 mm, started at -0.132182 mm, distance = -0.74 um
17-03-17 22:55:51.718 -07 000000409 INF: FPGA: Xmit ZDACW 29038\n [Z Motor]
17-03-17 22:55:51.718 -07 000000462 INF: FPGA: Recv YRDPOS 127786
17-03-17 22:55:51.718 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 22:55:51.718 -07 000000502 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:55:51.718 -07 000000502 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:55:51.718 -07 000000502 INF: Y Motor: Moving 1339 steps-15
17-03-17 22:55:51.718 -07 000000448 INF: FPGA: Recv ZDACW
17-03-17 22:55:51.728 -07 000000409 INF: FPGA: 'ZDACW 29038' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:55:51.728 -07 000000502 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:55:51.738 -07 000000409 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:55:51.738 -07 000000623 INF: FPGA: Recv ZDACR 29038
17-03-17 22:55:51.748 -07 000000409 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:55:51.748 -07 000000409 INF: Z Motor: MoveAbsStepped took 30 ms (did NOT wait for settling yet))
17-03-17 22:55:51.908 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 388 ms.
17-03-17 22:55:51.908 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 22:55:51.908 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:55:51.908 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 391 ms.
17-03-17 22:55:51.908 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 22:55:51.908 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:55:51.908 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 22:55:51.908 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 22:55:51.908 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 22:55:51.918 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 22:55:52.018 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:55:52.018 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 68. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1095, R2=1131, Total=2226. Warn if over 250 bubbles per interval.
17-03-17 22:55:52.098 -07 000000478 INF: FPGA: Recv YMVTILE
17-03-17 22:55:52.098 -07 000000502 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 386 ms overall
17-03-17 22:55:52.148 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:55:52.148 -07 000000627 INF: FPGA: Recv YRDPOS 129483
17-03-17 22:55:52.158 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:55:52.158 -07 000000502 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:55:52.158 -07 000000502 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-17 22:55:52.158 -07 000000502 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 386 ms, distance = 0.837 mm, average velocity = 2.169 mm/sec
17-03-17 22:55:53.108 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:55:53.108 -07 000000593 INF: FPGA: Recv YRDPOS 129483
17-03-17 22:55:53.118 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:55:53.118 -07 000000502 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:55:53.138 -07 000000502 INF: Y Motor: After move to 63.232609, error = -0.008488, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:55:53.138 -07 000000502 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:55:53.138 -07 000000502 INF: Y Motor: Moved to 63.2241 after 1429 ms (table move)
17-03-17 22:55:53.138 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.132927 mm (DAC = 29038)
17-03-17 22:55:53.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:53.148 -07 000000627 INF: FPGA: Recv ZSGSRD 29987
17-03-17 22:55:53.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 22:55:53.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:53.148 -07 000000415 INF: FPGA: Recv ZSGSRD 29974
17-03-17 22:55:53.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:55:53.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:53.158 -07 000000462 INF: FPGA: Recv ZSGSRD 29979
17-03-17 22:55:53.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:53.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:53.168 -07 000000576 INF: FPGA: Recv ZSGSRD 29993
17-03-17 22:55:53.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:53.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:53.178 -07 000000547 INF: FPGA: Recv ZSGSRD 29981
17-03-17 22:55:53.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:53.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:53.188 -07 000000429 INF: FPGA: Recv ZSGSRD 29988
17-03-17 22:55:53.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:55:53.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:53.198 -07 000000551 INF: FPGA: Recv ZSGSRD 29985
17-03-17 22:55:53.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:53.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:53.208 -07 000000415 INF: FPGA: Recv ZSGSRD 29974
17-03-17 22:55:53.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:53.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:53.218 -07 000000478 INF: FPGA: Recv ZSGSRD 29982
17-03-17 22:55:53.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:53.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:53.228 -07 000000448 INF: FPGA: Recv ZSGSRD 29975
17-03-17 22:55:53.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:53.238 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:55:53.238 -07 000000409 INF: FPGA: Recv ZPIEZORD 25662
17-03-17 22:55:53.248 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:53.248 -07 000000610 INF: Z Motor: Piezo is near 34.8 V (nominally 0 to 100 V), expect near 44.3 V, since DAC is at 4.431 V. Piezo Error = -9.5 V.
17-03-17 22:55:53.248 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.9 um, Read 10 ADC samples: Avg = 29982 (-132.1 uncal um), Error = 0.8 uncal um, Median = 29982 (-132.1 uncal um), StdDev = 6 (0.0 uncal um), Range = 19 (0.1 uncal um), Min = 29974 (-132.1 uncal um), Max = 29993 (-132.2 uncal um), Pos Noise = 11 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 22:55:53.248 -07 000000610 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29982, posNoise = 11, negNoise = 8
17-03-17 22:55:53.248 -07 000000610 INF: Z Motor: After move to -0.132927, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:55:53.248 -07 000000610 INF: Z Motor: Settle wait time = 1428 ms, measure time = 102 ms (allowed 150 ms), total time = 1530 ms
17-03-17 22:55:53.248 -07 000000610 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 22:55:53.298 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1586 ms
17-03-17 22:55:53.298 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:55:53.298 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.22412109375, Z-position -0.132934080445412. ----------
17-03-17 22:55:53.298 -07 000000610 INF: Cycle	69	Tile	5	Exposure Settings		A	463	G	223	T	223	C	463
17-03-17 22:55:53.298 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28862, sync = True, waitForSettling = True)
17-03-17 22:55:53.298 -07 000000610 INF: Z Motor: Moving to -0.132122 mm, started at -0.132934 mm, distance = 0.81 um
17-03-17 22:55:53.298 -07 000000610 INF: FPGA: Xmit ZDACW 28862\n [Z Motor]
17-03-17 22:55:53.298 -07 000000475 INF: FPGA: Recv ZDACW
17-03-17 22:55:53.308 -07 000000610 INF: FPGA: 'ZDACW 28862' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 22:55:53.308 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:55:53.308 -07 000000429 INF: FPGA: Recv ZDACR 28862
17-03-17 22:55:53.318 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:53.318 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:55:53.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:53.468 -07 000000593 INF: FPGA: Recv ZSGSRD 29865
17-03-17 22:55:53.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:55:53.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:53.478 -07 000000502 INF: FPGA: Recv ZSGSRD 29862
17-03-17 22:55:53.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:53.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:53.488 -07 000000478 INF: FPGA: Recv ZSGSRD 29861
17-03-17 22:55:53.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:53.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:53.498 -07 000000482 INF: FPGA: Recv ZSGSRD 29861
17-03-17 22:55:53.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:53.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:53.508 -07 000000409 INF: FPGA: Recv ZSGSRD 29852
17-03-17 22:55:53.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:53.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:53.518 -07 000000551 INF: FPGA: Recv ZSGSRD 29855
17-03-17 22:55:53.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:53.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:53.528 -07 000000415 INF: FPGA: Recv ZSGSRD 29858
17-03-17 22:55:53.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:53.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:53.538 -07 000000382 INF: FPGA: Recv ZSGSRD 29856
17-03-17 22:55:53.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:53.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:53.548 -07 000000623 INF: FPGA: Recv ZSGSRD 29863
17-03-17 22:55:53.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:53.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:53.558 -07 000000502 INF: FPGA: Recv ZSGSRD 29855
17-03-17 22:55:53.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:55:53.568 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:55:53.568 -07 000000462 INF: FPGA: Recv ZPIEZORD 25450
17-03-17 22:55:53.578 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:53.578 -07 000000610 INF: Z Motor: Piezo is near 34.4 V (nominally 0 to 100 V), expect near 44.0 V, since DAC is at 4.404 V. Piezo Error = -9.7 V.
17-03-17 22:55:53.578 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.1 um, Read 10 ADC samples: Avg = 29859 (-131.4 uncal um), Error = 0.8 uncal um, Median = 29860 (-131.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29852 (-131.3 uncal um), Max = 29865 (-131.4 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 22:55:53.578 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29859, posNoise = 6, negNoise = 7
17-03-17 22:55:53.578 -07 000000610 INF: Z Motor: After move to -0.132122, error = -0.000022, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:55:53.578 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 22:55:53.578 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:55:53.578 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:55:53.578 -07 000000429 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:55:53.578 -07 000000486 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:55:53.578 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:55:53.578 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:55:53.578 -07 000000475 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:55:53.578 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:55:53.578 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:55:53.578 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:55:53.578 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:55:53.578 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:55:53.588 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:55:53.588 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 22:55:53.588 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:55:53.588 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:55:53.598 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 22:55:53.598 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 22:55:53.598 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 22:55:53.598 -07 000000475 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 22:55:53.608 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 463 463 223 223 29038 150\n [Camera]
17-03-17 22:55:53.808 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:55:54.268 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 656
17-03-17 22:55:54.268 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 656
17-03-17 22:55:54.268 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:55:54.268 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:55:54.268 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) start.
17-03-17 22:55:54.268 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 656
17-03-17 22:55:54.268 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 656
17-03-17 22:55:54.268 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:55:54.268 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:55:54.268 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-17 22:55:54.458 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29038 848
17-03-17 22:55:54.608 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning grn on 998
17-03-17 22:55:54.648 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 22:55:54.648 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 22:55:54.648 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:55:54.648 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 22:55:54.648 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 22:55:54.648 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:55:54.648 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:55:54.648 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 22:55:54.648 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:55:54.658 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 22:55:54.828 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1221
17-03-17 22:55:54.838 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1221
17-03-17 22:55:54.838 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:55:54.838 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:55:54.838 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) start.
17-03-17 22:55:54.838 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1221
17-03-17 22:55:54.838 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1221
17-03-17 22:55:54.838 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:55:54.838 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:55:54.838 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 2620985504, 0x0, 418435064) start.
17-03-17 22:55:54.938 -07 000000627 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 69, FrontChillerTemperature: 4.027603,
17-03-17 22:55:55.028 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP 1414
17-03-17 22:55:55.028 -07 000000415 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:55:55.028 -07 000000610 INF: FPGA: 'CAMDBLSNAP 463 463 223 223 29038 150' command took 2 ms to send, 1411 ms to get response, and 1420 ms overall
17-03-17 22:55:55.028 -07 000000610 INF: Skipping AutoFocus in Tile 6: adopting Best-Z from the cache: -0.132582
17-03-17 22:55:55.028 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.13258 mm
17-03-17 22:55:55.028 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:55:55.028 -07 000000618 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-17 22:55:55.028 -07 000000618 INF: Y Motor: Moving to 64.0626 mm, started at 63.2241 mm, delta = 0.8385 mm
17-03-17 22:55:55.028 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:55:55.028 -07 000000475 INF: Z Motor: Entering MoveAbsStepped (DAC = 28963, sync = True, waitForSettling = False)
17-03-17 22:55:55.028 -07 000000475 INF: Z Motor: Moving to -0.132584 mm, started at -0.132144 mm, distance = -0.44 um
17-03-17 22:55:55.038 -07 000000475 INF: FPGA: Xmit ZDACW 28963\n [Z Motor]
17-03-17 22:55:55.038 -07 000000593 INF: FPGA: Recv YRDPOS 129483
17-03-17 22:55:55.038 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 22:55:55.038 -07 000000618 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:55:55.038 -07 000000618 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:55:55.038 -07 000000618 INF: Y Motor: Moving 1342 steps-17
17-03-17 22:55:55.038 -07 000000462 INF: FPGA: Recv ZDACW
17-03-17 22:55:55.048 -07 000000475 INF: FPGA: 'ZDACW 28963' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 22:55:55.048 -07 000000475 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:55:55.048 -07 000000448 INF: FPGA: Recv ZDACR 28963
17-03-17 22:55:55.058 -07 000000618 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:55:55.058 -07 000000475 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:55.058 -07 000000475 INF: Z Motor: MoveAbsStepped took 21 ms (did NOT wait for settling yet))
17-03-17 22:55:55.218 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) end. Duration was 386 ms.
17-03-17 22:55:55.218 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 22:55:55.218 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:55:55.228 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 2620985504, 0x0, 418435064) end. Duration was 387 ms.
17-03-17 22:55:55.228 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 22:55:55.228 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:55:55.228 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:55:55.228 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 22:55:55.228 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:55:55.238 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 22:55:55.428 -07 000000501 INF: FPGA: Recv YMVTILE
17-03-17 22:55:55.428 -07 000000618 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 398 ms overall
17-03-17 22:55:55.478 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:55:55.478 -07 000000623 INF: FPGA: Recv YRDPOS 131189
17-03-17 22:55:55.488 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:55:55.488 -07 000000618 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:55:55.488 -07 000000618 INF: Y Motor: Position error before settling (table move) = -11 encoder counts (-0.005 mm)
17-03-17 22:55:55.488 -07 000000618 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.838 mm, average velocity = 2.107 mm/sec
17-03-17 22:55:56.438 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:55:56.438 -07 000000478 INF: FPGA: Recv YRDPOS 131189
17-03-17 22:55:56.448 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:55:56.448 -07 000000618 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:55:56.468 -07 000000618 INF: Y Motor: After move to 64.062607, error = -0.005478, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:55:56.468 -07 000000618 INF: Y Motor: Position error after settling (table move) = -11 encoder counts (-0.005 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:55:56.468 -07 000000618 INF: Y Motor: Moved to 64.0571 after 1435 ms (table move)
17-03-17 22:55:56.468 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.132584 mm (DAC = 28963)
17-03-17 22:55:56.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:56.468 -07 000000502 INF: FPGA: Recv ZSGSRD 29933
17-03-17 22:55:56.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 22:55:56.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:56.478 -07 000000486 INF: FPGA: Recv ZSGSRD 29933
17-03-17 22:55:56.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:56.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:56.488 -07 000000576 INF: FPGA: Recv ZSGSRD 29930
17-03-17 22:55:56.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:56.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:56.498 -07 000000478 INF: FPGA: Recv ZSGSRD 29930
17-03-17 22:55:56.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:55:56.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:56.508 -07 000000551 INF: FPGA: Recv ZSGSRD 29921
17-03-17 22:55:56.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:56.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:56.518 -07 000000475 INF: FPGA: Recv ZSGSRD 29934
17-03-17 22:55:56.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:56.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:56.528 -07 000000593 INF: FPGA: Recv ZSGSRD 29928
17-03-17 22:55:56.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:56.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:56.538 -07 000000618 INF: FPGA: Recv ZSGSRD 29926
17-03-17 22:55:56.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:56.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:56.548 -07 000000462 INF: FPGA: Recv ZSGSRD 29935
17-03-17 22:55:56.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:56.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:56.558 -07 000000541 INF: FPGA: Recv ZSGSRD 29931
17-03-17 22:55:56.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:56.568 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:55:56.568 -07 000000576 INF: FPGA: Recv ZPIEZORD 25562
17-03-17 22:55:56.578 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:56.578 -07 000000610 INF: Z Motor: Piezo is near 34.6 V (nominally 0 to 100 V), expect near 44.2 V, since DAC is at 4.419 V. Piezo Error = -9.6 V.
17-03-17 22:55:56.578 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.6 um, Read 10 ADC samples: Avg = 29930 (-131.8 uncal um), Error = 0.8 uncal um, Median = 29930 (-131.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 29921 (-131.8 uncal um), Max = 29935 (-131.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 22:55:56.578 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29930, posNoise = 5, negNoise = 9
17-03-17 22:55:56.578 -07 000000610 INF: Z Motor: After move to -0.132584, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:55:56.578 -07 000000610 INF: Z Motor: Settle wait time = 1436 ms, measure time = 105 ms (allowed 150 ms), total time = 1541 ms
17-03-17 22:55:56.578 -07 000000610 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 22:55:56.628 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1594 ms
17-03-17 22:55:56.628 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:55:56.628 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.05712890625, Z-position -0.13260002141404. ----------
17-03-17 22:55:56.628 -07 000000610 INF: Cycle	69	Tile	6	Exposure Settings		A	463	G	223	T	223	C	463
17-03-17 22:55:56.628 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28786, sync = True, waitForSettling = True)
17-03-17 22:55:56.628 -07 000000610 INF: Z Motor: Moving to -0.131774 mm, started at -0.132600 mm, distance = 0.83 um
17-03-17 22:55:56.628 -07 000000610 INF: FPGA: Xmit ZDACW 28786\n [Z Motor]
17-03-17 22:55:56.628 -07 000000482 INF: FPGA: Recv ZDACW
17-03-17 22:55:56.638 -07 000000610 INF: FPGA: 'ZDACW 28786' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 22:55:56.638 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:55:56.638 -07 000000475 INF: FPGA: Recv ZDACR 28786
17-03-17 22:55:56.648 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:56.648 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:55:56.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:56.798 -07 000000593 INF: FPGA: Recv ZSGSRD 29804
17-03-17 22:55:56.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:55:56.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:56.808 -07 000000618 INF: FPGA: Recv ZSGSRD 29802
17-03-17 22:55:56.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:56.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:56.818 -07 000000627 INF: FPGA: Recv ZSGSRD 29800
17-03-17 22:55:56.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:56.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:56.828 -07 000000551 INF: FPGA: Recv ZSGSRD 29800
17-03-17 22:55:56.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:56.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:56.838 -07 000000475 INF: FPGA: Recv ZSGSRD 29805
17-03-17 22:55:56.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:56.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:56.848 -07 000000462 INF: FPGA: Recv ZSGSRD 29803
17-03-17 22:55:56.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:56.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:56.858 -07 000000541 INF: FPGA: Recv ZSGSRD 29799
17-03-17 22:55:56.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:56.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:56.868 -07 000000475 INF: FPGA: Recv ZSGSRD 29801
17-03-17 22:55:56.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:56.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:56.878 -07 000000382 INF: FPGA: Recv ZSGSRD 29803
17-03-17 22:55:56.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:56.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:56.888 -07 000000501 INF: FPGA: Recv ZSGSRD 29802
17-03-17 22:55:56.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:56.898 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:55:56.898 -07 000000627 INF: FPGA: Recv ZPIEZORD 25435
17-03-17 22:55:56.908 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:56.908 -07 000000610 INF: Z Motor: Piezo is near 34.3 V (nominally 0 to 100 V), expect near 43.9 V, since DAC is at 4.392 V. Piezo Error = -9.6 V.
17-03-17 22:55:56.908 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.8 um, Read 10 ADC samples: Avg = 29802 (-131.0 uncal um), Error = 0.8 uncal um, Median = 29802 (-131.0 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 29799 (-131.0 uncal um), Max = 29805 (-131.0 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 22:55:56.908 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29802, posNoise = 3, negNoise = 3
17-03-17 22:55:56.908 -07 000000610 INF: Z Motor: After move to -0.131774, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:55:56.908 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 22:55:56.908 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:55:56.908 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:55:56.908 -07 000000482 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:55:56.908 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:55:56.908 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:55:56.908 -07 000000486 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:55:56.908 -07 000000409 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:55:56.908 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:55:56.908 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:55:56.908 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:55:56.908 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:55:56.908 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:55:56.918 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:55:56.918 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:55:56.918 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:55:56.918 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:55:56.928 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 22:55:56.928 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 22:55:56.928 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 22:55:56.928 -07 000000486 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 22:55:56.938 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 463 463 223 223 28963 150\n [Camera]
17-03-17 22:55:57.018 -07 000000475 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:55:57.018 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 68. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1095, R2=1131, Total=2226. Warn if over 250 bubbles per interval.
17-03-17 22:55:57.138 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:55:57.598 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 655
17-03-17 22:55:57.598 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 655
17-03-17 22:55:57.598 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:55:57.598 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:55:57.598 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) start.
17-03-17 22:55:57.598 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 655
17-03-17 22:55:57.598 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 655
17-03-17 22:55:57.598 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:55:57.598 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:55:57.598 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2719780968, 0x0, 418435064) start.
17-03-17 22:55:57.788 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28963 848
17-03-17 22:55:57.938 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning grn on 998
17-03-17 22:55:57.978 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 22:55:57.978 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 22:55:57.978 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:55:57.978 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2719780968, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 22:55:57.978 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 22:55:57.978 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:55:57.988 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 22:55:57.988 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 22:55:57.988 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 22:55:57.988 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 22:55:58.158 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1221
17-03-17 22:55:58.168 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1221
17-03-17 22:55:58.168 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:55:58.168 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:55:58.168 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 2755203232, 0x0, 391868352) start.
17-03-17 22:55:58.168 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1221
17-03-17 22:55:58.168 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1221
17-03-17 22:55:58.168 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:55:58.168 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:55:58.168 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 2818576432, 0x0, 418435064) start.
17-03-17 22:55:58.358 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP 1413
17-03-17 22:55:58.358 -07 000000415 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:55:58.358 -07 000000610 INF: FPGA: 'CAMDBLSNAP 463 463 223 223 28963 150' command took 2 ms to send, 1411 ms to get response, and 1420 ms overall
17-03-17 22:55:58.358 -07 000000610 INF: Skipping AutoFocus in Tile 7: adopting Best-Z from the cache: -0.132367
17-03-17 22:55:58.358 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.13237 mm
17-03-17 22:55:58.358 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:55:58.358 -07 000000541 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-17 22:55:58.358 -07 000000541 INF: Y Motor: Moving to 64.8926 mm, started at 64.0571 mm, delta = 0.8355 mm
17-03-17 22:55:58.358 -07 000000547 INF: Z Motor: Entering MoveAbsStepped (DAC = 28915, sync = True, waitForSettling = False)
17-03-17 22:55:58.358 -07 000000547 INF: Z Motor: Moving to -0.132364 mm, started at -0.131778 mm, distance = -0.59 um
17-03-17 22:55:58.358 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:55:58.358 -07 000000429 INF: FPGA: Recv YRDPOS 131189
17-03-17 22:55:58.368 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:55:58.368 -07 000000541 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:55:58.368 -07 000000541 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:55:58.368 -07 000000541 INF: Y Motor: Moving 1337 steps-11
17-03-17 22:55:58.368 -07 000000547 INF: FPGA: Xmit ZDACW 28915\n [Z Motor]
17-03-17 22:55:58.368 -07 000000576 INF: FPGA: Recv ZDACW
17-03-17 22:55:58.378 -07 000000547 INF: FPGA: 'ZDACW 28915' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 22:55:58.378 -07 000000547 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:55:58.378 -07 000000623 INF: FPGA: Recv ZDACR 28915
17-03-17 22:55:58.388 -07 000000541 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:55:58.388 -07 000000547 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:58.388 -07 000000547 INF: Z Motor: MoveAbsStepped took 24 ms (did NOT wait for settling yet))
17-03-17 22:55:58.548 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 2755203232, 0x0, 391868352) end. Duration was 379 ms.
17-03-17 22:55:58.548 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 22:55:58.548 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:55:58.548 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:55:58.548 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 22:55:58.548 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 2818576432, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 22:55:58.548 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-17 22:55:58.548 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:55:58.558 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:55:58.558 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 22:55:58.758 -07 000000415 INF: FPGA: Recv YMVTILE
17-03-17 22:55:58.758 -07 000000541 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 22:55:58.798 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:55:58.808 -07 000000551 INF: FPGA: Recv YRDPOS 132872
17-03-17 22:55:58.808 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 22:55:58.808 -07 000000541 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:55:58.808 -07 000000541 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 22:55:58.808 -07 000000541 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.835 mm, average velocity = 2.104 mm/sec
17-03-17 22:55:59.758 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:55:59.758 -07 000000486 INF: FPGA: Recv YRDPOS 132872
17-03-17 22:55:59.768 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:55:59.768 -07 000000541 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:55:59.788 -07 000000541 INF: Y Motor: After move to 64.892609, error = -0.013702, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:55:59.788 -07 000000541 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:55:59.788 -07 000000541 INF: Y Motor: Moved to 64.8789 after 1429 ms (table move)
17-03-17 22:55:59.788 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.132364 mm (DAC = 28915)
17-03-17 22:55:59.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:59.798 -07 000000618 INF: FPGA: Recv ZSGSRD 29895
17-03-17 22:55:59.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-17 22:55:59.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:59.798 -07 000000551 INF: FPGA: Recv ZSGSRD 29905
17-03-17 22:55:59.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:55:59.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:59.808 -07 000000502 INF: FPGA: Recv ZSGSRD 29891
17-03-17 22:55:59.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:59.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:59.818 -07 000000501 INF: FPGA: Recv ZSGSRD 29893
17-03-17 22:55:59.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:59.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:59.828 -07 000000482 INF: FPGA: Recv ZSGSRD 29900
17-03-17 22:55:59.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:59.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:59.838 -07 000000429 INF: FPGA: Recv ZSGSRD 29903
17-03-17 22:55:59.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:59.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:59.848 -07 000000593 INF: FPGA: Recv ZSGSRD 29893
17-03-17 22:55:59.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:59.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:59.858 -07 000000448 INF: FPGA: Recv ZSGSRD 29889
17-03-17 22:55:59.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:59.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:59.868 -07 000000462 INF: FPGA: Recv ZSGSRD 29901
17-03-17 22:55:59.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:59.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:55:59.878 -07 000000482 INF: FPGA: Recv ZSGSRD 29893
17-03-17 22:55:59.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:59.888 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:55:59.888 -07 000000502 INF: FPGA: Recv ZPIEZORD 25568
17-03-17 22:55:59.898 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:59.898 -07 000000610 INF: Z Motor: Piezo is near 34.6 V (nominally 0 to 100 V), expect near 44.1 V, since DAC is at 4.412 V. Piezo Error = -9.5 V.
17-03-17 22:55:59.898 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.4 um, Read 10 ADC samples: Avg = 29896 (-131.6 uncal um), Error = 0.8 uncal um, Median = 29894 (-131.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 29889 (-131.6 uncal um), Max = 29905 (-131.7 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 22:55:59.898 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29896, posNoise = 9, negNoise = 7
17-03-17 22:55:59.898 -07 000000610 INF: Z Motor: After move to -0.132364, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:55:59.898 -07 000000610 INF: Z Motor: Settle wait time = 1432 ms, measure time = 102 ms (allowed 150 ms), total time = 1534 ms
17-03-17 22:55:59.898 -07 000000610 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 22:55:59.948 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1585 ms
17-03-17 22:55:59.948 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:55:59.948 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87890625, Z-position -0.132381598201221. ----------
17-03-17 22:55:59.948 -07 000000610 INF: Cycle	69	Tile	7	Exposure Settings		A	463	G	223	T	223	C	463
17-03-17 22:55:59.948 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28739, sync = True, waitForSettling = True)
17-03-17 22:55:59.948 -07 000000610 INF: Z Motor: Moving to -0.131559 mm, started at -0.132382 mm, distance = 0.82 um
17-03-17 22:55:59.948 -07 000000610 INF: FPGA: Xmit ZDACW 28739\n [Z Motor]
17-03-17 22:55:59.948 -07 000000593 INF: FPGA: Recv ZDACW
17-03-17 22:55:59.958 -07 000000610 INF: FPGA: 'ZDACW 28739' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 22:55:59.958 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:55:59.958 -07 000000415 INF: FPGA: Recv ZDACR 28739
17-03-17 22:55:59.968 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:55:59.968 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:56:00.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:00.118 -07 000000502 INF: FPGA: Recv ZSGSRD 29766
17-03-17 22:56:00.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:56:00.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:00.128 -07 000000576 INF: FPGA: Recv ZSGSRD 29772
17-03-17 22:56:00.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:00.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:00.138 -07 000000593 INF: FPGA: Recv ZSGSRD 29770
17-03-17 22:56:00.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:00.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:00.148 -07 000000462 INF: FPGA: Recv ZSGSRD 29767
17-03-17 22:56:00.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:00.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:00.158 -07 000000551 INF: FPGA: Recv ZSGSRD 29766
17-03-17 22:56:00.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:00.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:00.168 -07 000000448 INF: FPGA: Recv ZSGSRD 29769
17-03-17 22:56:00.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:00.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:00.178 -07 000000475 INF: FPGA: Recv ZSGSRD 29767
17-03-17 22:56:00.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:00.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:00.188 -07 000000541 INF: FPGA: Recv ZSGSRD 29765
17-03-17 22:56:00.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:00.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:00.198 -07 000000618 INF: FPGA: Recv ZSGSRD 29769
17-03-17 22:56:00.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:00.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:00.208 -07 000000501 INF: FPGA: Recv ZSGSRD 29770
17-03-17 22:56:00.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:00.218 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:56:00.218 -07 000000502 INF: FPGA: Recv ZPIEZORD 25376
17-03-17 22:56:00.228 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:00.228 -07 000000610 INF: Z Motor: Piezo is near 34.2 V (nominally 0 to 100 V), expect near 43.9 V, since DAC is at 4.385 V. Piezo Error = -9.6 V.
17-03-17 22:56:00.228 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.6 um, Read 10 ADC samples: Avg = 29768 (-130.8 uncal um), Error = 0.8 uncal um, Median = 29768 (-130.8 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 29765 (-130.8 uncal um), Max = 29772 (-130.8 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 22:56:00.228 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29768, posNoise = 4, negNoise = 3
17-03-17 22:56:00.228 -07 000000610 INF: Z Motor: After move to -0.131559, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:56:00.228 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 22:56:00.228 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:56:00.228 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:56:00.228 -07 000000593 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:56:00.228 -07 000000448 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:56:00.228 -07 000000478 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:56:00.228 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:56:00.228 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:56:00.228 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:56:00.228 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:56:00.228 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:56:00.228 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:56:00.228 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:56:00.228 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 22:56:00.238 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:56:00.238 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:56:00.238 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:56:00.248 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 22:56:00.248 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 22:56:00.248 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 22:56:00.248 -07 000000478 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 22:56:00.248 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 463 463 223 223 28915 150\n [Camera]
17-03-17 22:56:00.298 -07 000000486 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 69, FrontChillerTemperature: 4.028963,
17-03-17 22:56:00.458 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:56:00.918 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 655
17-03-17 22:56:00.918 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 655
17-03-17 22:56:00.918 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:56:00.918 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:56:00.918 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2853998696, 0x0, 391868352) start.
17-03-17 22:56:00.918 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 655
17-03-17 22:56:00.918 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 655
17-03-17 22:56:00.918 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:56:00.918 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:56:00.918 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 2889420960, 0x0, 418435064) start.
17-03-17 22:56:01.108 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28915 848
17-03-17 22:56:01.258 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1000
17-03-17 22:56:01.288 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 2889420960, 0x0, 418435064) end. Duration was 371 ms.
17-03-17 22:56:01.288 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-17 22:56:01.288 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:56:01.298 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2853998696, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 22:56:01.298 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 22:56:01.298 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:56:01.298 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:56:01.298 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:56:01.298 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 22:56:01.308 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-17 22:56:01.478 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1221
17-03-17 22:56:01.478 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1221
17-03-17 22:56:01.488 -07 000000409 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:56:01.488 -07 000000409 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:56:01.488 -07 000000409 INF: Camera: sBCa_ReadImage(785074288, 2952794160, 0x0, 391868352) start.
17-03-17 22:56:01.488 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1221
17-03-17 22:56:01.488 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1221
17-03-17 22:56:01.488 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:56:01.488 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:56:01.488 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 2988216424, 0x0, 418435064) start.
17-03-17 22:56:01.678 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP 1413
17-03-17 22:56:01.678 -07 000000593 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:56:01.678 -07 000000610 INF: FPGA: 'CAMDBLSNAP 463 463 223 223 28915 150' command took 2 ms to send, 1411 ms to get response, and 1423 ms overall
17-03-17 22:56:01.678 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 22:56:01.678 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.87890625, Z-Position -0.131559299047075. ------
17-03-17 22:56:01.678 -07 000000486 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:56:01.678 -07 000000501 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.13818 mm
17-03-17 22:56:01.678 -07 000000501 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:56:01.678 -07 000000475 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-17 22:56:01.678 -07 000000475 INF: Y Motor: Moving to 65.7226 mm, started at 64.8789 mm, delta = 0.8437 mm
17-03-17 22:56:01.678 -07 000000415 INF: Z Motor: Entering MoveAbsStepped (DAC = 30185, sync = True, waitForSettling = False)
17-03-17 22:56:01.678 -07 000000415 INF: Z Motor: Moving to -0.138178 mm, started at -0.131559 mm, distance = -6.62 um
17-03-17 22:56:01.678 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:56:01.688 -07 000000486 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:56:01.688 -07 000000415 INF: FPGA: Xmit ZDACW 30185\n [Z Motor]
17-03-17 22:56:01.688 -07 000000623 INF: FPGA: Recv ZDACW
17-03-17 22:56:01.698 -07 000000415 INF: FPGA: 'ZDACW 30185' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 22:56:01.698 -07 000000486 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:56:01.708 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:56:01.848 -07 000000382 INF: FPGA: Recv YRDPOS 132872
17-03-17 22:56:01.858 -07 000000415 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:56:01.858 -07 000000475 INF: FPGA: 'YRDPOS' command took 143 ms to send, 0 ms to get response, and 171 ms overall
17-03-17 22:56:01.858 -07 000000475 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:56:01.858 -07 000000475 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:56:01.858 -07 000000475 INF: Y Motor: Moving 1350 steps-28
17-03-17 22:56:01.858 -07 000000547 INF: FPGA: Recv ZDACR 30185
17-03-17 22:56:01.868 -07 000000415 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 169 ms overall
17-03-17 22:56:01.868 -07 000000475 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:56:01.868 -07 000000415 INF: Z Motor: MoveAbsStepped took 181 ms (did NOT wait for settling yet))
17-03-17 22:56:01.888 -07 000000409 INF: Camera: sBCa_ReadImage(785074288, 2952794160, 0x0, 391868352) end. Duration was 398 ms.
17-03-17 22:56:01.888 -07 000000409 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 22:56:01.888 -07 000000409 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:56:01.888 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 2988216424, 0x0, 418435064) end. Duration was 397 ms.
17-03-17 22:56:01.888 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 22:56:01.888 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:56:01.888 -07 000000409 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:56:01.888 -07 000000409 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 22:56:01.888 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:56:01.898 -07 000000593 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:56:01.898 -07 000000486 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 212 ms overall
17-03-17 22:56:01.898 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-17 22:56:02.018 -07 000000409 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:56:02.018 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 68. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1095, R2=1131, Total=2226. Warn if over 250 bubbles per interval.
17-03-17 22:56:02.248 -07 000000382 INF: FPGA: Recv YMVTILE
17-03-17 22:56:02.248 -07 000000475 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 389 ms overall
17-03-17 22:56:02.288 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:56:02.288 -07 000000547 INF: FPGA: Recv YRDPOS 134582
17-03-17 22:56:02.298 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:56:02.298 -07 000000475 INF: Y Motor: Encoder = 134582 = motor step 105142.2 = 65.7139 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:56:02.298 -07 000000475 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-17 22:56:02.298 -07 000000475 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 389 ms, distance = 0.844 mm, average velocity = 2.169 mm/sec
17-03-17 22:56:03.248 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:56:03.248 -07 000000486 INF: FPGA: Recv YRDPOS 134583
17-03-17 22:56:03.258 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:56:03.258 -07 000000475 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:56:03.278 -07 000000475 INF: Y Motor: After move to 65.722610, error = -0.008255, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:56:03.278 -07 000000475 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 22:56:03.278 -07 000000475 INF: Y Motor: Moved to 65.7144 after 1600 ms (table move)
17-03-17 22:56:03.288 -07 000000501 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138178 mm (DAC = 30185)
17-03-17 22:56:03.288 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:03.288 -07 000000576 INF: FPGA: Recv ZSGSRD 30792
17-03-17 22:56:03.298 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:56:03.298 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:03.298 -07 000000409 INF: FPGA: Recv ZSGSRD 30797
17-03-17 22:56:03.308 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:03.308 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:03.308 -07 000000547 INF: FPGA: Recv ZSGSRD 30800
17-03-17 22:56:03.318 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:03.318 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:03.318 -07 000000478 INF: FPGA: Recv ZSGSRD 30789
17-03-17 22:56:03.328 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:03.328 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:03.328 -07 000000623 INF: FPGA: Recv ZSGSRD 30796
17-03-17 22:56:03.338 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:03.338 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:03.338 -07 000000415 INF: FPGA: Recv ZSGSRD 30801
17-03-17 22:56:03.348 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:03.348 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:03.348 -07 000000409 INF: FPGA: Recv ZSGSRD 30800
17-03-17 22:56:03.358 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:03.358 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:03.358 -07 000000448 INF: FPGA: Recv ZSGSRD 30810
17-03-17 22:56:03.368 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:03.368 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:03.368 -07 000000475 INF: FPGA: Recv ZSGSRD 30796
17-03-17 22:56:03.378 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:03.378 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:03.378 -07 000000576 INF: FPGA: Recv ZSGSRD 30798
17-03-17 22:56:03.388 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:03.388 -07 000000501 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:56:03.388 -07 000000627 INF: FPGA: Recv ZPIEZORD 26756
17-03-17 22:56:03.398 -07 000000501 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:03.398 -07 000000501 INF: Z Motor: Piezo is near 37.2 V (nominally 0 to 100 V), expect near 46.1 V, since DAC is at 4.606 V. Piezo Error = -8.9 V.
17-03-17 22:56:03.398 -07 000000501 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.2 um, Read 10 ADC samples: Avg = 30798 (-137.4 uncal um), Error = 0.8 uncal um, Median = 30798 (-137.4 uncal um), StdDev = 6 (0.0 uncal um), Range = 21 (0.1 uncal um), Min = 30789 (-137.3 uncal um), Max = 30810 (-137.5 uncal um), Pos Noise = 12 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 22:56:03.398 -07 000000501 INF: Z Motor: ADC noise = 12, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30798, posNoise = 12, negNoise = 9
17-03-17 22:56:03.398 -07 000000501 INF: Z Motor: After move to -0.138178, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:56:03.398 -07 000000501 INF: Z Motor: Settle wait time = 1604 ms, measure time = 107 ms (allowed 150 ms), total time = 1711 ms
17-03-17 22:56:03.398 -07 000000501 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 22:56:03.448 -07 000000501 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1763 ms
17-03-17 22:56:03.448 -07 000000501 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:56:03.448 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:56:03.448 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:56:03.448 -07 000000415 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:56:03.448 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:56:03.448 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:56:03.448 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:56:03.448 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:56:03.448 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:56:03.458 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-17 22:56:03.458 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:56:03.468 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 22:56:03.468 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-17 22:56:03.468 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:56:03.518 -07 000000462 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:56:03.718 -07 000000501 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:56:03.718 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:56:03.718 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:56:03.718 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 22:56:03.758 -07 000000475 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:56:03.758 -07 000000618 INF: FPGA: Recv CAMSNAP
17-03-17 22:56:03.758 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 285 ms to get response, and 287 ms overall
17-03-17 22:56:03.828 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 22:56:03.828 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:56:03.838 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:56:03.838 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 116 ms.
17-03-17 22:56:03.858 -07 000000623 INF: Autofocus start
17-03-17 22:56:03.858 -07 000000623 INF: MeasureProfile start
17-03-17 22:56:03.858 -07 000000478 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:56:03.858 -07 000000551 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:56:03.868 -07 000000478 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 22:56:03.868 -07 000000478 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:56:03.868 -07 000000623 INF: MeasureProfile done
17-03-17 22:56:03.868 -07 000000623 INF: X=16  Z correction [um]=0.0530179
17-03-17 22:56:03.868 -07 000000623 INF: Autofocus finished
17-03-17 22:56:04.068 -07 000000486 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:56:04.068 -07 000000478 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 205 ms overall
17-03-17 22:56:04.078 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.71435546875, Z-position -0.138176237553089. ----------
17-03-17 22:56:04.078 -07 000000610 INF: Cycle	69	Tile	8	Exposure Settings		A	463	G	223	T	223	C	463
17-03-17 22:56:04.078 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28709, sync = True, waitForSettling = True)
17-03-17 22:56:04.078 -07 000000610 INF: Z Motor: Moving to -0.131421 mm, started at -0.138176 mm, distance = 6.75 um
17-03-17 22:56:04.078 -07 000000610 INF: FPGA: Xmit ZDACW 28709\n [Z Motor]
17-03-17 22:56:04.078 -07 000000618 INF: FPGA: Recv ZDACW
17-03-17 22:56:04.088 -07 000000610 INF: FPGA: 'ZDACW 28709' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:56:04.088 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:56:04.088 -07 000000547 INF: FPGA: Recv ZDACR 28709
17-03-17 22:56:04.098 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:04.098 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:56:04.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:04.248 -07 000000486 INF: FPGA: Recv ZSGSRD 29743
17-03-17 22:56:04.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:04.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:04.258 -07 000000415 INF: FPGA: Recv ZSGSRD 29745
17-03-17 22:56:04.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:04.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:04.268 -07 000000541 INF: FPGA: Recv ZSGSRD 29746
17-03-17 22:56:04.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:04.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:04.278 -07 000000482 INF: FPGA: Recv ZSGSRD 29749
17-03-17 22:56:04.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:04.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:04.288 -07 000000547 INF: FPGA: Recv ZSGSRD 29751
17-03-17 22:56:04.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:04.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:04.298 -07 000000627 INF: FPGA: Recv ZSGSRD 29743
17-03-17 22:56:04.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:04.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:04.308 -07 000000475 INF: FPGA: Recv ZSGSRD 29746
17-03-17 22:56:04.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:04.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:04.318 -07 000000486 INF: FPGA: Recv ZSGSRD 29750
17-03-17 22:56:04.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:04.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:04.328 -07 000000576 INF: FPGA: Recv ZSGSRD 29745
17-03-17 22:56:04.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:04.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:04.338 -07 000000478 INF: FPGA: Recv ZSGSRD 29747
17-03-17 22:56:04.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:04.348 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:56:04.348 -07 000000409 INF: FPGA: Recv ZPIEZORD 25350
17-03-17 22:56:04.358 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:04.358 -07 000000610 INF: Z Motor: Piezo is near 34.2 V (nominally 0 to 100 V), expect near 43.8 V, since DAC is at 4.381 V. Piezo Error = -9.7 V.
17-03-17 22:56:04.358 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.4 um, Read 10 ADC samples: Avg = 29746 (-130.6 uncal um), Error = 0.8 uncal um, Median = 29746 (-130.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29743 (-130.6 uncal um), Max = 29751 (-130.7 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 22:56:04.358 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29746, posNoise = 5, negNoise = 3
17-03-17 22:56:04.358 -07 000000610 INF: Z Motor: After move to -0.131421, error = 0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:56:04.358 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-17 22:56:04.358 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:56:04.358 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:56:04.358 -07 000000486 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:56:04.358 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:56:04.358 -07 000000547 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:56:04.358 -07 000000478 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:56:04.358 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:56:04.358 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:56:04.358 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:56:04.358 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:56:04.358 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:56:04.358 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:56:04.368 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:56:04.368 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:56:04.368 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 22:56:04.368 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:56:04.378 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 22:56:04.378 -07 000000547 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 22:56:04.378 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-17 22:56:04.378 -07 000000478 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 22:56:04.378 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 463 463 223 223 28885 150\n [Camera]
17-03-17 22:56:04.578 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:56:05.038 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 655
17-03-17 22:56:05.038 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 655
17-03-17 22:56:05.038 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:56:05.048 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 655
17-03-17 22:56:05.048 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 655
17-03-17 22:56:05.048 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:56:05.048 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:56:05.048 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-17 22:56:05.048 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:56:05.048 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 22:56:05.238 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28885 848
17-03-17 22:56:05.388 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning grn on 998
17-03-17 22:56:05.418 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 374 ms.
17-03-17 22:56:05.418 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 374 ms.
17-03-17 22:56:05.418 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:56:05.428 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 372 ms.
17-03-17 22:56:05.428 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-17 22:56:05.428 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:56:05.428 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:56:05.428 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 22:56:05.428 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:56:05.438 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 22:56:05.608 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1221
17-03-17 22:56:05.608 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1221
17-03-17 22:56:05.608 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:56:05.608 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1221
17-03-17 22:56:05.608 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1221
17-03-17 22:56:05.608 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:56:05.608 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:56:05.608 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 1094749800, 0x0, 418435064) start.
17-03-17 22:56:05.728 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:56:05.728 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-17 22:56:05.738 -07 000000448 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 69, FrontChillerTemperature: 4.028963,
17-03-17 22:56:05.798 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP 1414
17-03-17 22:56:05.798 -07 000000409 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:56:05.798 -07 000000610 INF: FPGA: 'CAMDBLSNAP 463 463 223 223 28885 150' command took 2 ms to send, 1416 ms to get response, and 1421 ms overall
17-03-17 22:56:05.798 -07 000000610 INF: Skipping AutoFocus in Tile 9: adopting Best-Z from the cache: -0.131765
17-03-17 22:56:05.798 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.13176 mm
17-03-17 22:56:05.798 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:56:05.808 -07 000000462 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-17 22:56:05.808 -07 000000462 INF: Y Motor: Moving to 66.5526 mm, started at 65.7144 mm, delta = 0.8382 mm
17-03-17 22:56:05.808 -07 000000502 INF: Z Motor: Entering MoveAbsStepped (DAC = 28784, sync = True, waitForSettling = False)
17-03-17 22:56:05.808 -07 000000502 INF: Z Motor: Moving to -0.131765 mm, started at -0.131418 mm, distance = -0.35 um
17-03-17 22:56:05.808 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:56:05.808 -07 000000547 INF: FPGA: Recv YRDPOS 134583
17-03-17 22:56:05.818 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:05.818 -07 000000462 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:56:05.818 -07 000000462 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:56:05.818 -07 000000462 INF: Y Motor: Moving 1341 steps-18
17-03-17 22:56:05.818 -07 000000502 INF: FPGA: Xmit ZDACW 28784\n [Z Motor]
17-03-17 22:56:05.818 -07 000000623 INF: FPGA: Recv ZDACW
17-03-17 22:56:05.828 -07 000000502 INF: FPGA: 'ZDACW 28784' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:56:05.828 -07 000000502 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:56:05.828 -07 000000486 INF: FPGA: Recv ZDACR 28784
17-03-17 22:56:05.838 -07 000000502 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:05.838 -07 000000502 INF: Z Motor: MoveAbsStepped took 29 ms (did NOT wait for settling yet))
17-03-17 22:56:05.838 -07 000000462 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:56:06.008 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 1094749800, 0x0, 418435064) end. Duration was 394 ms.
17-03-17 22:56:06.008 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 22:56:06.008 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:56:06.008 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:56:06.018 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-17 22:56:06.118 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 393 ms.
17-03-17 22:56:06.118 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 22:56:06.118 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:56:06.118 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 22:56:06.118 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 513 ms.
17-03-17 22:56:06.208 -07 000000623 INF: FPGA: Recv YMVTILE
17-03-17 22:56:06.208 -07 000000462 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 22:56:06.248 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:56:06.258 -07 000000547 INF: FPGA: Recv YRDPOS 136272
17-03-17 22:56:06.258 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 22:56:06.258 -07 000000462 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:56:06.258 -07 000000462 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 22:56:06.258 -07 000000462 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.838 mm, average velocity = 2.106 mm/sec
17-03-17 22:56:07.018 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:56:07.018 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 68. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1095, R2=1131, Total=2226. Warn if over 250 bubbles per interval.
17-03-17 22:56:07.208 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:56:07.208 -07 000000501 INF: FPGA: Recv YRDPOS 136272
17-03-17 22:56:07.218 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:56:07.218 -07 000000462 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:56:07.238 -07 000000462 INF: Y Motor: After move to 66.552605, error = -0.013542, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:56:07.238 -07 000000462 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:56:07.238 -07 000000462 INF: Y Motor: Moved to 66.5391 after 1436 ms (table move)
17-03-17 22:56:07.248 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.131765 mm (DAC = 28784)
17-03-17 22:56:07.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:07.248 -07 000000382 INF: FPGA: Recv ZSGSRD 29801
17-03-17 22:56:07.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:07.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:07.258 -07 000000576 INF: FPGA: Recv ZSGSRD 29799
17-03-17 22:56:07.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:07.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:07.268 -07 000000429 INF: FPGA: Recv ZSGSRD 29808
17-03-17 22:56:07.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:07.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:07.278 -07 000000551 INF: FPGA: Recv ZSGSRD 29803
17-03-17 22:56:07.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:07.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:07.288 -07 000000482 INF: FPGA: Recv ZSGSRD 29800
17-03-17 22:56:07.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:07.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:07.298 -07 000000382 INF: FPGA: Recv ZSGSRD 29801
17-03-17 22:56:07.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:07.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:07.308 -07 000000475 INF: FPGA: Recv ZSGSRD 29797
17-03-17 22:56:07.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:07.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:07.318 -07 000000593 INF: FPGA: Recv ZSGSRD 29800
17-03-17 22:56:07.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:07.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:07.328 -07 000000627 INF: FPGA: Recv ZSGSRD 29797
17-03-17 22:56:07.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:07.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:07.338 -07 000000448 INF: FPGA: Recv ZSGSRD 29801
17-03-17 22:56:07.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:07.348 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:56:07.348 -07 000000415 INF: FPGA: Recv ZPIEZORD 25480
17-03-17 22:56:07.358 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:07.358 -07 000000610 INF: Z Motor: Piezo is near 34.4 V (nominally 0 to 100 V), expect near 43.9 V, since DAC is at 4.392 V. Piezo Error = -9.5 V.
17-03-17 22:56:07.358 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.8 um, Read 10 ADC samples: Avg = 29801 (-131.0 uncal um), Error = 0.8 uncal um, Median = 29800 (-131.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29797 (-131.0 uncal um), Max = 29808 (-131.0 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 22:56:07.358 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29801, posNoise = 7, negNoise = 4
17-03-17 22:56:07.358 -07 000000610 INF: Z Motor: After move to -0.131765, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:56:07.358 -07 000000610 INF: Z Motor: Settle wait time = 1439 ms, measure time = 110 ms (allowed 150 ms), total time = 1549 ms
17-03-17 22:56:07.358 -07 000000610 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-17 22:56:07.398 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1591 ms
17-03-17 22:56:07.398 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:56:07.398 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.5390625, Z-position -0.131771298047753. ----------
17-03-17 22:56:07.398 -07 000000610 INF: Cycle	69	Tile	9	Exposure Settings		A	463	G	223	T	223	C	463
17-03-17 22:56:07.398 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28607, sync = True, waitForSettling = True)
17-03-17 22:56:07.398 -07 000000610 INF: Z Motor: Moving to -0.130954 mm, started at -0.131771 mm, distance = 0.82 um
17-03-17 22:56:07.398 -07 000000610 INF: FPGA: Xmit ZDACW 28607\n [Z Motor]
17-03-17 22:56:07.398 -07 000000502 INF: FPGA: Recv ZDACW
17-03-17 22:56:07.408 -07 000000610 INF: FPGA: 'ZDACW 28607' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:56:07.408 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:56:07.408 -07 000000486 INF: FPGA: Recv ZDACR 28607
17-03-17 22:56:07.418 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:07.418 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:56:07.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:07.568 -07 000000475 INF: FPGA: Recv ZSGSRD 29674
17-03-17 22:56:07.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:56:07.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:07.578 -07 000000448 INF: FPGA: Recv ZSGSRD 29678
17-03-17 22:56:07.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:07.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:07.588 -07 000000541 INF: FPGA: Recv ZSGSRD 29673
17-03-17 22:56:07.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:07.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:07.598 -07 000000502 INF: FPGA: Recv ZSGSRD 29681
17-03-17 22:56:07.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:07.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:07.608 -07 000000593 INF: FPGA: Recv ZSGSRD 29677
17-03-17 22:56:07.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:07.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:07.618 -07 000000551 INF: FPGA: Recv ZSGSRD 29673
17-03-17 22:56:07.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:07.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:07.628 -07 000000409 INF: FPGA: Recv ZSGSRD 29676
17-03-17 22:56:07.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:07.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:07.638 -07 000000501 INF: FPGA: Recv ZSGSRD 29676
17-03-17 22:56:07.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:07.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:07.648 -07 000000627 INF: FPGA: Recv ZSGSRD 29670
17-03-17 22:56:07.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:07.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:07.658 -07 000000486 INF: FPGA: Recv ZSGSRD 29676
17-03-17 22:56:07.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:07.668 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:56:07.668 -07 000000475 INF: FPGA: Recv ZPIEZORD 25289
17-03-17 22:56:07.678 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:07.678 -07 000000610 INF: Z Motor: Piezo is near 34.0 V (nominally 0 to 100 V), expect near 43.7 V, since DAC is at 4.365 V. Piezo Error = -9.6 V.
17-03-17 22:56:07.678 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.0 um, Read 10 ADC samples: Avg = 29675 (-130.2 uncal um), Error = 0.8 uncal um, Median = 29676 (-130.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29670 (-130.1 uncal um), Max = 29681 (-130.2 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 22:56:07.678 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29675, posNoise = 6, negNoise = 5
17-03-17 22:56:07.678 -07 000000610 INF: Z Motor: After move to -0.130954, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:56:07.678 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-17 22:56:07.678 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:56:07.678 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:56:07.678 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:56:07.678 -07 000000415 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:56:07.678 -07 000000478 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:56:07.678 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:56:07.678 -07 000000486 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:56:07.678 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:56:07.688 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:56:07.688 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:56:07.688 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:56:07.688 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:56:07.688 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 22:56:07.688 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:56:07.688 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 22:56:07.688 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:56:07.698 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 22:56:07.698 -07 000000478 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 22:56:07.698 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-17 22:56:07.698 -07 000000486 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 22:56:07.708 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 463 463 223 223 28784 150\n [Camera]
17-03-17 22:56:07.898 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:56:08.368 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 655
17-03-17 22:56:08.368 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 655
17-03-17 22:56:08.368 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:56:08.368 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 655
17-03-17 22:56:08.368 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 655
17-03-17 22:56:08.378 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:56:08.378 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:56:08.378 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) start.
17-03-17 22:56:08.378 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:56:08.378 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 22:56:08.558 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28784 848
17-03-17 22:56:08.708 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP turning grn on 998
17-03-17 22:56:08.748 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 22:56:08.748 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-17 22:56:08.748 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:56:08.748 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 375 ms.
17-03-17 22:56:08.748 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 22:56:08.748 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:56:08.758 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:56:08.758 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:56:08.758 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 22:56:08.768 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 22:56:08.928 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1221
17-03-17 22:56:08.928 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1221
17-03-17 22:56:08.938 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:56:08.938 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:56:08.938 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 1165594328, 0x0, 391868352) start.
17-03-17 22:56:08.938 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1221
17-03-17 22:56:08.938 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1221
17-03-17 22:56:08.938 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:56:08.938 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:56:08.938 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 22:56:09.128 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP 1414
17-03-17 22:56:09.128 -07 000000551 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:56:09.128 -07 000000610 INF: FPGA: 'CAMDBLSNAP 463 463 223 223 28784 150' command took 2 ms to send, 1411 ms to get response, and 1420 ms overall
17-03-17 22:56:09.128 -07 000000610 INF: Skipping AutoFocus in Tile 10: adopting Best-Z from the cache: -0.131707
17-03-17 22:56:09.128 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.13171 mm
17-03-17 22:56:09.128 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:56:09.128 -07 000000541 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-17 22:56:09.128 -07 000000541 INF: Y Motor: Moving to 67.3826 mm, started at 66.5391 mm, delta = 0.8435 mm
17-03-17 22:56:09.128 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:56:09.128 -07 000000547 INF: Z Motor: Entering MoveAbsStepped (DAC = 28771, sync = True, waitForSettling = False)
17-03-17 22:56:09.128 -07 000000547 INF: Z Motor: Moving to -0.131705 mm, started at -0.130962 mm, distance = -0.74 um
17-03-17 22:56:09.128 -07 000000576 INF: FPGA: Recv YRDPOS 136272
17-03-17 22:56:09.138 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 22:56:09.138 -07 000000541 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:56:09.138 -07 000000541 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:56:09.138 -07 000000541 INF: Y Motor: Moving 1350 steps-28
17-03-17 22:56:09.138 -07 000000547 INF: FPGA: Xmit ZDACW 28771\n [Z Motor]
17-03-17 22:56:09.138 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 22:56:09.148 -07 000000547 INF: FPGA: 'ZDACW 28771' command took 2 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 22:56:09.148 -07 000000547 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:56:09.148 -07 000000462 INF: FPGA: Recv ZDACR 28771
17-03-17 22:56:09.158 -07 000000541 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:56:09.158 -07 000000547 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:56:09.158 -07 000000547 INF: Z Motor: MoveAbsStepped took 24 ms (did NOT wait for settling yet))
17-03-17 22:56:09.318 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 383 ms.
17-03-17 22:56:09.318 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-17 22:56:09.318 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:56:09.328 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:56:09.328 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 1165594328, 0x0, 391868352) end. Duration was 390 ms.
17-03-17 22:56:09.328 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 22:56:09.328 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:56:09.328 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:56:09.328 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 22:56:09.328 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 22:56:09.528 -07 000000502 INF: FPGA: Recv YMVTILE
17-03-17 22:56:09.528 -07 000000541 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-17 22:56:09.568 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:56:09.578 -07 000000547 INF: FPGA: Recv YRDPOS 137978
17-03-17 22:56:09.578 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 22:56:09.578 -07 000000541 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:56:09.578 -07 000000541 INF: Y Motor: Position error before settling (table move) = -22 encoder counts (-0.011 mm)
17-03-17 22:56:09.578 -07 000000541 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.844 mm, average velocity = 2.119 mm/sec
17-03-17 22:56:10.528 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:56:10.528 -07 000000462 INF: FPGA: Recv YRDPOS 137978
17-03-17 22:56:10.538 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:56:10.538 -07 000000541 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:56:10.558 -07 000000541 INF: Y Motor: After move to 67.382607, error = -0.010536, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:56:10.558 -07 000000541 INF: Y Motor: Position error after settling (table move) = -22 encoder counts (-0.011 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:56:10.558 -07 000000541 INF: Y Motor: Moved to 67.3721 after 1430 ms (table move)
17-03-17 22:56:10.558 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.131705 mm (DAC = 28771)
17-03-17 22:56:10.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:10.568 -07 000000415 INF: FPGA: Recv ZSGSRD 29790
17-03-17 22:56:10.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 22:56:10.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:10.568 -07 000000547 INF: FPGA: Recv ZSGSRD 29784
17-03-17 22:56:10.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:56:10.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:10.578 -07 000000429 INF: FPGA: Recv ZSGSRD 29791
17-03-17 22:56:10.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:10.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:10.588 -07 000000462 INF: FPGA: Recv ZSGSRD 29794
17-03-17 22:56:10.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:10.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:10.598 -07 000000593 INF: FPGA: Recv ZSGSRD 29798
17-03-17 22:56:10.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:10.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:10.608 -07 000000482 INF: FPGA: Recv ZSGSRD 29798
17-03-17 22:56:10.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:10.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:10.618 -07 000000478 INF: FPGA: Recv ZSGSRD 29798
17-03-17 22:56:10.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:10.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:10.628 -07 000000382 INF: FPGA: Recv ZSGSRD 29789
17-03-17 22:56:10.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:10.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:10.638 -07 000000618 INF: FPGA: Recv ZSGSRD 29788
17-03-17 22:56:10.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:10.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:10.648 -07 000000486 INF: FPGA: Recv ZSGSRD 29786
17-03-17 22:56:10.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:10.658 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:56:10.658 -07 000000502 INF: FPGA: Recv ZPIEZORD 25458
17-03-17 22:56:10.668 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:10.668 -07 000000610 INF: Z Motor: Piezo is near 34.4 V (nominally 0 to 100 V), expect near 43.9 V, since DAC is at 4.390 V. Piezo Error = -9.5 V.
17-03-17 22:56:10.668 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.7 um, Read 10 ADC samples: Avg = 29792 (-130.9 uncal um), Error = 0.8 uncal um, Median = 29790 (-130.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 29784 (-130.9 uncal um), Max = 29798 (-131.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 22:56:10.668 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29792, posNoise = 6, negNoise = 8
17-03-17 22:56:10.668 -07 000000610 INF: Z Motor: After move to -0.131705, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:56:10.668 -07 000000610 INF: Z Motor: Settle wait time = 1432 ms, measure time = 102 ms (allowed 150 ms), total time = 1534 ms
17-03-17 22:56:10.668 -07 000000610 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 22:56:10.718 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1586 ms
17-03-17 22:56:10.718 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:56:10.718 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.3720703125, Z-position -0.131713480138477. ----------
17-03-17 22:56:10.718 -07 000000610 INF: Cycle	69	Tile	10	Exposure Settings		A	463	G	223	T	223	C	463
17-03-17 22:56:10.718 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28595, sync = True, waitForSettling = True)
17-03-17 22:56:10.718 -07 000000610 INF: Z Motor: Moving to -0.130900 mm, started at -0.131713 mm, distance = 0.81 um
17-03-17 22:56:10.718 -07 000000610 INF: FPGA: Xmit ZDACW 28595\n [Z Motor]
17-03-17 22:56:10.718 -07 000000576 INF: FPGA: Recv ZDACW
17-03-17 22:56:10.728 -07 000000610 INF: FPGA: 'ZDACW 28595' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:56:10.728 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:56:10.728 -07 000000551 INF: FPGA: Recv ZDACR 28595
17-03-17 22:56:10.738 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:10.738 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:56:10.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:10.888 -07 000000409 INF: FPGA: Recv ZSGSRD 29663
17-03-17 22:56:10.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:10.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:10.898 -07 000000618 INF: FPGA: Recv ZSGSRD 29669
17-03-17 22:56:10.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:10.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:10.908 -07 000000429 INF: FPGA: Recv ZSGSRD 29670
17-03-17 22:56:10.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:10.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:10.918 -07 000000462 INF: FPGA: Recv ZSGSRD 29667
17-03-17 22:56:10.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:10.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:10.928 -07 000000486 INF: FPGA: Recv ZSGSRD 29667
17-03-17 22:56:10.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:10.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:10.938 -07 000000501 INF: FPGA: Recv ZSGSRD 29665
17-03-17 22:56:10.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:10.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:10.948 -07 000000478 INF: FPGA: Recv ZSGSRD 29670
17-03-17 22:56:10.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:10.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:10.958 -07 000000429 INF: FPGA: Recv ZSGSRD 29666
17-03-17 22:56:10.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:10.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:10.968 -07 000000482 INF: FPGA: Recv ZSGSRD 29661
17-03-17 22:56:10.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:56:10.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:10.978 -07 000000593 INF: FPGA: Recv ZSGSRD 29665
17-03-17 22:56:10.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:10.988 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:56:10.988 -07 000000501 INF: FPGA: Recv ZPIEZORD 25315
17-03-17 22:56:10.998 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:10.998 -07 000000610 INF: Z Motor: Piezo is near 34.1 V (nominally 0 to 100 V), expect near 43.6 V, since DAC is at 4.363 V. Piezo Error = -9.6 V.
17-03-17 22:56:10.998 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.9 um, Read 10 ADC samples: Avg = 29666 (-130.1 uncal um), Error = 0.8 uncal um, Median = 29666 (-130.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29661 (-130.1 uncal um), Max = 29670 (-130.1 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 22:56:10.998 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29666, posNoise = 4, negNoise = 5
17-03-17 22:56:10.998 -07 000000610 INF: Z Motor: After move to -0.130900, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:56:10.998 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-17 22:56:10.998 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:56:10.998 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:56:10.998 -07 000000478 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:56:10.998 -07 000000593 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:56:10.998 -07 000000475 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:56:10.998 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:56:10.998 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:56:10.998 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:56:10.998 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:56:10.998 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:56:10.998 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:56:10.998 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:56:11.008 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:56:11.008 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:56:11.008 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:56:11.008 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:56:11.018 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 22:56:11.018 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 22:56:11.018 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 22:56:11.018 -07 000000475 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 22:56:11.028 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 463 463 223 223 28771 150\n [Camera]
17-03-17 22:56:11.108 -07 000000623 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 69, FrontChillerTemperature: 4.009895,
17-03-17 22:56:11.228 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:56:11.688 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 655
17-03-17 22:56:11.688 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 655
17-03-17 22:56:11.688 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:56:11.688 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:56:11.688 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-17 22:56:11.688 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 655
17-03-17 22:56:11.688 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 655
17-03-17 22:56:11.688 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:56:11.688 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:56:11.688 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-17 22:56:11.878 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28771 848
17-03-17 22:56:12.018 -07 000000551 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:56:12.018 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 68. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1095, R2=1131, Total=2226. Warn if over 250 bubbles per interval.
17-03-17 22:56:12.028 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP turning grn on 998
17-03-17 22:56:12.068 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 22:56:12.068 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-17 22:56:12.068 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:56:12.068 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:56:12.078 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 389 ms.
17-03-17 22:56:12.078 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 22:56:12.078 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:56:12.078 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 22:56:12.078 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:56:12.078 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 22:56:12.248 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1221
17-03-17 22:56:12.248 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1221
17-03-17 22:56:12.258 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:56:12.258 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:56:12.258 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-17 22:56:12.258 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1221
17-03-17 22:56:12.258 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1221
17-03-17 22:56:12.258 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:56:12.258 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:56:12.258 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-17 22:56:12.448 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP 1414
17-03-17 22:56:12.448 -07 000000482 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:56:12.448 -07 000000610 INF: FPGA: 'CAMDBLSNAP 463 463 223 223 28771 150' command took 2 ms to send, 1411 ms to get response, and 1420 ms overall
17-03-17 22:56:12.448 -07 000000610 INF: Skipping AutoFocus in Tile 11: adopting Best-Z from the cache: -0.131351
17-03-17 22:56:12.448 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.13135 mm
17-03-17 22:56:12.448 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:56:12.448 -07 000000502 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-17 22:56:12.448 -07 000000502 INF: Y Motor: Moving to 68.2126 mm, started at 67.3721 mm, delta = 0.8405 mm
17-03-17 22:56:12.448 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:56:12.448 -07 000000501 INF: Z Motor: Entering MoveAbsStepped (DAC = 28694, sync = True, waitForSettling = False)
17-03-17 22:56:12.448 -07 000000501 INF: Z Motor: Moving to -0.131353 mm, started at -0.130904 mm, distance = -0.45 um
17-03-17 22:56:12.458 -07 000000501 INF: FPGA: Xmit ZDACW 28694\n [Z Motor]
17-03-17 22:56:12.458 -07 000000627 INF: FPGA: Recv YRDPOS 137978
17-03-17 22:56:12.458 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 22:56:12.458 -07 000000502 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:56:12.458 -07 000000502 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:56:12.458 -07 000000502 INF: Y Motor: Moving 1345 steps-22
17-03-17 22:56:12.458 -07 000000541 INF: FPGA: Recv ZDACW
17-03-17 22:56:12.468 -07 000000501 INF: FPGA: 'ZDACW 28694' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:56:12.468 -07 000000502 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:56:12.478 -07 000000501 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:56:12.478 -07 000000475 INF: FPGA: Recv ZDACR 28694
17-03-17 22:56:12.488 -07 000000501 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:56:12.488 -07 000000501 INF: Z Motor: MoveAbsStepped took 30 ms (did NOT wait for settling yet))
17-03-17 22:56:12.638 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 376 ms.
17-03-17 22:56:12.638 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-17 22:56:12.638 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:56:12.638 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 22:56:12.638 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 22:56:12.638 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:56:12.638 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:56:12.638 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:56:12.638 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 22:56:12.648 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 22:56:12.838 -07 000000478 INF: FPGA: Recv YMVTILE
17-03-17 22:56:12.838 -07 000000502 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 386 ms overall
17-03-17 22:56:12.888 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:56:12.888 -07 000000541 INF: FPGA: Recv YRDPOS 139684
17-03-17 22:56:12.898 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:56:12.898 -07 000000502 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:56:12.898 -07 000000502 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-17 22:56:12.898 -07 000000502 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 386 ms, distance = 0.841 mm, average velocity = 2.178 mm/sec
17-03-17 22:56:13.848 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:56:13.848 -07 000000501 INF: FPGA: Recv YRDPOS 139684
17-03-17 22:56:13.858 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:56:13.858 -07 000000502 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:56:13.878 -07 000000502 INF: Y Motor: After move to 68.212608, error = -0.007530, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:56:13.878 -07 000000502 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:56:13.878 -07 000000502 INF: Y Motor: Moved to 68.2051 after 1426 ms (table move)
17-03-17 22:56:13.878 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.131353 mm (DAC = 28694)
17-03-17 22:56:13.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:13.888 -07 000000482 INF: FPGA: Recv ZSGSRD 29730
17-03-17 22:56:13.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 22:56:13.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:13.888 -07 000000475 INF: FPGA: Recv ZSGSRD 29744
17-03-17 22:56:13.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:13.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:13.898 -07 000000618 INF: FPGA: Recv ZSGSRD 29742
17-03-17 22:56:13.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:13.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:13.908 -07 000000501 INF: FPGA: Recv ZSGSRD 29737
17-03-17 22:56:13.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:13.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:13.918 -07 000000502 INF: FPGA: Recv ZSGSRD 29736
17-03-17 22:56:13.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:13.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:13.928 -07 000000382 INF: FPGA: Recv ZSGSRD 29736
17-03-17 22:56:13.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:13.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:13.938 -07 000000541 INF: FPGA: Recv ZSGSRD 29735
17-03-17 22:56:13.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:13.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:13.948 -07 000000448 INF: FPGA: Recv ZSGSRD 29730
17-03-17 22:56:13.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:13.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:13.958 -07 000000501 INF: FPGA: Recv ZSGSRD 29732
17-03-17 22:56:13.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:13.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:13.968 -07 000000429 INF: FPGA: Recv ZSGSRD 29743
17-03-17 22:56:13.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:13.978 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:56:13.978 -07 000000551 INF: FPGA: Recv ZPIEZORD 25446
17-03-17 22:56:13.988 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:13.988 -07 000000610 INF: Z Motor: Piezo is near 34.4 V (nominally 0 to 100 V), expect near 43.8 V, since DAC is at 4.378 V. Piezo Error = -9.4 V.
17-03-17 22:56:13.988 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.4 um, Read 10 ADC samples: Avg = 29736 (-130.6 uncal um), Error = 0.8 uncal um, Median = 29736 (-130.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 29730 (-130.5 uncal um), Max = 29744 (-130.6 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 22:56:13.988 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29736, posNoise = 8, negNoise = 6
17-03-17 22:56:13.988 -07 000000610 INF: Z Motor: After move to -0.131353, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:56:13.988 -07 000000610 INF: Z Motor: Settle wait time = 1427 ms, measure time = 104 ms (allowed 150 ms), total time = 1531 ms
17-03-17 22:56:13.988 -07 000000610 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 22:56:14.038 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1586 ms
17-03-17 22:56:14.038 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:56:14.038 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.205078125, Z-position -0.131353724258539. ----------
17-03-17 22:56:14.038 -07 000000610 INF: Cycle	69	Tile	11	Exposure Settings		A	463	G	223	T	223	C	463
17-03-17 22:56:14.038 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28517, sync = True, waitForSettling = True)
17-03-17 22:56:14.038 -07 000000610 INF: Z Motor: Moving to -0.130542 mm, started at -0.131354 mm, distance = 0.81 um
17-03-17 22:56:14.038 -07 000000610 INF: FPGA: Xmit ZDACW 28517\n [Z Motor]
17-03-17 22:56:14.038 -07 000000409 INF: FPGA: Recv ZDACW
17-03-17 22:56:14.048 -07 000000610 INF: FPGA: 'ZDACW 28517' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 22:56:14.048 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:56:14.048 -07 000000482 INF: FPGA: Recv ZDACR 28517
17-03-17 22:56:14.058 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:14.058 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:56:14.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:14.208 -07 000000415 INF: FPGA: Recv ZSGSRD 29611
17-03-17 22:56:14.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:56:14.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:14.218 -07 000000576 INF: FPGA: Recv ZSGSRD 29617
17-03-17 22:56:14.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:14.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:14.228 -07 000000475 INF: FPGA: Recv ZSGSRD 29613
17-03-17 22:56:14.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:14.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:14.238 -07 000000409 INF: FPGA: Recv ZSGSRD 29609
17-03-17 22:56:14.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:14.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:14.248 -07 000000551 INF: FPGA: Recv ZSGSRD 29607
17-03-17 22:56:14.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:14.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:14.258 -07 000000502 INF: FPGA: Recv ZSGSRD 29606
17-03-17 22:56:14.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:14.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:14.268 -07 000000448 INF: FPGA: Recv ZSGSRD 29614
17-03-17 22:56:14.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:14.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:14.278 -07 000000501 INF: FPGA: Recv ZSGSRD 29613
17-03-17 22:56:14.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:14.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:14.288 -07 000000623 INF: FPGA: Recv ZSGSRD 29613
17-03-17 22:56:14.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:14.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:14.298 -07 000000576 INF: FPGA: Recv ZSGSRD 29611
17-03-17 22:56:14.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:14.308 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:56:14.308 -07 000000618 INF: FPGA: Recv ZPIEZORD 25288
17-03-17 22:56:14.318 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:14.318 -07 000000610 INF: Z Motor: Piezo is near 34.0 V (nominally 0 to 100 V), expect near 43.5 V, since DAC is at 4.351 V. Piezo Error = -9.5 V.
17-03-17 22:56:14.318 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.5 um, Read 10 ADC samples: Avg = 29611 (-129.8 uncal um), Error = 0.8 uncal um, Median = 29612 (-129.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29606 (-129.7 uncal um), Max = 29617 (-129.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 22:56:14.318 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29611, posNoise = 6, negNoise = 5
17-03-17 22:56:14.318 -07 000000610 INF: Z Motor: After move to -0.130542, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:56:14.318 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 22:56:14.318 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:56:14.318 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:56:14.318 -07 000000541 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:56:14.318 -07 000000448 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:56:14.318 -07 000000551 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:56:14.318 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:56:14.318 -07 000000429 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:56:14.318 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:56:14.318 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 22:56:14.318 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:56:14.318 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:56:14.318 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:56:14.328 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 22:56:14.328 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:56:14.328 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 22:56:14.328 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:56:14.338 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 22:56:14.338 -07 000000551 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 22:56:14.338 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 22:56:14.338 -07 000000429 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 22:56:14.348 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 463 463 223 223 28694 150\n [Camera]
17-03-17 22:56:14.548 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:56:15.008 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 655
17-03-17 22:56:15.008 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 655
17-03-17 22:56:15.008 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:56:15.008 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:56:15.008 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) start.
17-03-17 22:56:15.008 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 655
17-03-17 22:56:15.008 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 655
17-03-17 22:56:15.008 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:56:15.138 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:56:15.138 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 22:56:15.198 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28694 848
17-03-17 22:56:15.348 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP turning grn on 998
17-03-17 22:56:15.388 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 22:56:15.388 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 22:56:15.388 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:56:15.398 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:56:15.398 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 22:56:15.508 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 371 ms.
17-03-17 22:56:15.508 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-17 22:56:15.508 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:56:15.508 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:56:15.518 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 505 ms.
17-03-17 22:56:15.578 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1223
17-03-17 22:56:15.578 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1223
17-03-17 22:56:15.578 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:56:15.578 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1223
17-03-17 22:56:15.578 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1223
17-03-17 22:56:15.578 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:56:15.578 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:56:15.578 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-17 22:56:15.588 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:56:15.588 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 22:56:15.768 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP 1414
17-03-17 22:56:15.768 -07 000000593 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:56:15.768 -07 000000610 INF: FPGA: 'CAMDBLSNAP 463 463 223 223 28694 150' command took 2 ms to send, 1411 ms to get response, and 1421 ms overall
17-03-17 22:56:15.768 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 22:56:15.768 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.205078125, Z-Position -0.130550697740819. ------
17-03-17 22:56:15.768 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:56:15.768 -07 000000475 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.13721 mm
17-03-17 22:56:15.768 -07 000000475 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:56:15.778 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:56:15.778 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:56:15.778 -07 000000576 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:56:15.778 -07 000000547 INF: Z Motor: Entering MoveAbsStepped (DAC = 29975, sync = True, waitForSettling = False)
17-03-17 22:56:15.778 -07 000000547 INF: Z Motor: Moving to -0.137217 mm, started at -0.130551 mm, distance = -6.67 um
17-03-17 22:56:15.778 -07 000000593 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-17 22:56:15.778 -07 000000593 INF: Y Motor: Moving to 69.0426 mm, started at 68.2051 mm, delta = 0.8375 mm
17-03-17 22:56:15.788 -07 000000593 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:56:15.788 -07 000000541 INF: FPGA: Recv YRDPOS 139685
17-03-17 22:56:15.798 -07 000000547 INF: FPGA: Xmit ZDACW 29975\n [Z Motor]
17-03-17 22:56:15.798 -07 000000593 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 22:56:15.798 -07 000000593 INF: Y Motor: Encoder = 139685 = motor step 109128.9 = 68.2056 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:56:15.798 -07 000000551 INF: FPGA: Recv ZDACW
17-03-17 22:56:15.798 -07 000000593 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:56:15.798 -07 000000593 INF: Y Motor: Moving 1339 steps-15
17-03-17 22:56:15.808 -07 000000547 INF: FPGA: 'ZDACW 29975' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-17 22:56:15.808 -07 000000593 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:56:15.818 -07 000000547 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:56:15.818 -07 000000551 INF: FPGA: Recv ZDACR 29975
17-03-17 22:56:15.828 -07 000000547 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:56:15.828 -07 000000547 INF: Z Motor: MoveAbsStepped took 45 ms (did NOT wait for settling yet))
17-03-17 22:56:15.958 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 379 ms.
17-03-17 22:56:15.958 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 22:56:15.958 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:56:15.958 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 376 ms.
17-03-17 22:56:15.968 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 22:56:15.968 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:56:15.968 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:56:15.968 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 22:56:15.968 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:56:15.978 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 22:56:15.978 -07 000000627 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:56:15.978 -07 000000576 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 202 ms overall
17-03-17 22:56:16.178 -07 000000462 INF: FPGA: Recv YMVTILE
17-03-17 22:56:16.178 -07 000000593 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 384 ms overall
17-03-17 22:56:16.228 -07 000000593 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:56:16.228 -07 000000502 INF: FPGA: Recv YRDPOS 141368
17-03-17 22:56:16.238 -07 000000593 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:16.238 -07 000000593 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:56:16.238 -07 000000593 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-17 22:56:16.238 -07 000000593 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 384 ms, distance = 0.838 mm, average velocity = 2.181 mm/sec
17-03-17 22:56:16.488 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 69, FrontChillerTemperature: 3.977204,
17-03-17 22:56:17.018 -07 000000448 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:56:17.018 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 68. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1095, R2=1131, Total=2226. Warn if over 250 bubbles per interval.
17-03-17 22:56:17.188 -07 000000593 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:56:17.188 -07 000000618 INF: FPGA: Recv YRDPOS 141368
17-03-17 22:56:17.198 -07 000000593 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:56:17.198 -07 000000593 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:56:17.218 -07 000000593 INF: Y Motor: After move to 69.042610, error = -0.015266, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:56:17.218 -07 000000593 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:56:17.218 -07 000000593 INF: Y Motor: Moved to 69.0273 after 1440 ms (table move)
17-03-17 22:56:17.218 -07 000000475 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137217 mm (DAC = 29975)
17-03-17 22:56:17.218 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:17.228 -07 000000486 INF: FPGA: Recv ZSGSRD 30653
17-03-17 22:56:17.228 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 22:56:17.228 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:17.228 -07 000000618 INF: FPGA: Recv ZSGSRD 30646
17-03-17 22:56:17.238 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:56:17.238 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:17.238 -07 000000482 INF: FPGA: Recv ZSGSRD 30655
17-03-17 22:56:17.248 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:17.248 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:17.248 -07 000000547 INF: FPGA: Recv ZSGSRD 30647
17-03-17 22:56:17.258 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:17.258 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:17.258 -07 000000462 INF: FPGA: Recv ZSGSRD 30650
17-03-17 22:56:17.268 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:17.268 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:17.268 -07 000000415 INF: FPGA: Recv ZSGSRD 30649
17-03-17 22:56:17.278 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:17.278 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:17.278 -07 000000618 INF: FPGA: Recv ZSGSRD 30645
17-03-17 22:56:17.288 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:17.288 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:17.288 -07 000000593 INF: FPGA: Recv ZSGSRD 30648
17-03-17 22:56:17.298 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:17.298 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:17.298 -07 000000482 INF: FPGA: Recv ZSGSRD 30646
17-03-17 22:56:17.308 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:17.308 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:17.308 -07 000000462 INF: FPGA: Recv ZSGSRD 30652
17-03-17 22:56:17.318 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:17.318 -07 000000475 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:56:17.318 -07 000000415 INF: FPGA: Recv ZPIEZORD 26622
17-03-17 22:56:17.328 -07 000000475 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:17.328 -07 000000475 INF: Z Motor: Piezo is near 36.9 V (nominally 0 to 100 V), expect near 45.7 V, since DAC is at 4.574 V. Piezo Error = -8.9 V.
17-03-17 22:56:17.328 -07 000000475 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.2 um, Read 10 ADC samples: Avg = 30649 (-136.4 uncal um), Error = 0.8 uncal um, Median = 30648 (-136.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 30645 (-136.4 uncal um), Max = 30655 (-136.5 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 22:56:17.328 -07 000000475 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30649, posNoise = 6, negNoise = 4
17-03-17 22:56:17.328 -07 000000475 INF: Z Motor: After move to -0.137217, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:56:17.328 -07 000000475 INF: Z Motor: Settle wait time = 1444 ms, measure time = 103 ms (allowed 150 ms), total time = 1547 ms
17-03-17 22:56:17.328 -07 000000475 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 22:56:17.378 -07 000000475 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1600 ms
17-03-17 22:56:17.378 -07 000000475 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:56:17.378 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:56:17.378 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:56:17.378 -07 000000551 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:56:17.378 -07 000000547 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:56:17.378 -07 000000623 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:56:17.378 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:56:17.378 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:56:17.378 -07 000000623 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:56:17.378 -07 000000623 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:56:17.388 -07 000000623 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:56:17.398 -07 000000623 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 22:56:17.398 -07 000000623 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 22:56:17.398 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:56:17.448 -07 000000623 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:56:17.648 -07 000000475 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:56:17.648 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:56:17.648 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:56:17.648 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2317127784, 0x0, 559484976) start.
17-03-17 22:56:17.688 -07 000000547 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:56:17.688 -07 000000409 INF: FPGA: Recv CAMSNAP
17-03-17 22:56:17.688 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 284 ms overall
17-03-17 22:56:17.768 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2317127784, 0x0, 559484976) end. Duration was 122 ms.
17-03-17 22:56:17.768 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:56:17.768 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:56:17.768 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 125 ms.
17-03-17 22:56:17.788 -07 000000541 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:56:17.788 -07 000000576 INF: Autofocus start
17-03-17 22:56:17.788 -07 000000576 INF: MeasureProfile start
17-03-17 22:56:17.788 -07 000000486 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:56:17.798 -07 000000541 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:56:17.798 -07 000000541 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:56:17.798 -07 000000576 INF: MeasureProfile done
17-03-17 22:56:17.798 -07 000000576 INF: X=0  Z correction [um]=-0.02394831
17-03-17 22:56:17.798 -07 000000576 INF: Autofocus finished
17-03-17 22:56:17.998 -07 000000618 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:56:17.998 -07 000000541 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:56:17.998 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02734375, Z-position -0.137219029943967. ----------
17-03-17 22:56:17.998 -07 000000610 INF: Cycle	69	Tile	12	Exposure Settings		A	463	G	223	T	223	C	463
17-03-17 22:56:18.008 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28482, sync = True, waitForSettling = True)
17-03-17 22:56:18.008 -07 000000610 INF: Z Motor: Moving to -0.130382 mm, started at -0.137219 mm, distance = 6.84 um
17-03-17 22:56:18.008 -07 000000610 INF: FPGA: Xmit ZDACW 28482\n [Z Motor]
17-03-17 22:56:18.008 -07 000000502 INF: FPGA: Recv ZDACW
17-03-17 22:56:18.018 -07 000000610 INF: FPGA: 'ZDACW 28482' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:18.018 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:56:18.018 -07 000000618 INF: FPGA: Recv ZDACR 28482
17-03-17 22:56:18.028 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:18.028 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:56:18.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:18.178 -07 000000409 INF: FPGA: Recv ZSGSRD 29588
17-03-17 22:56:18.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:56:18.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:18.188 -07 000000382 INF: FPGA: Recv ZSGSRD 29589
17-03-17 22:56:18.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:18.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:18.198 -07 000000541 INF: FPGA: Recv ZSGSRD 29580
17-03-17 22:56:18.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:18.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:18.208 -07 000000576 INF: FPGA: Recv ZSGSRD 29591
17-03-17 22:56:18.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:56:18.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:18.218 -07 000000502 INF: FPGA: Recv ZSGSRD 29585
17-03-17 22:56:18.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:18.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:18.228 -07 000000501 INF: FPGA: Recv ZSGSRD 29586
17-03-17 22:56:18.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:18.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:18.238 -07 000000415 INF: FPGA: Recv ZSGSRD 29589
17-03-17 22:56:18.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:18.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:18.248 -07 000000593 INF: FPGA: Recv ZSGSRD 29582
17-03-17 22:56:18.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:18.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:18.258 -07 000000623 INF: FPGA: Recv ZSGSRD 29587
17-03-17 22:56:18.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:18.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:18.268 -07 000000502 INF: FPGA: Recv ZSGSRD 29584
17-03-17 22:56:18.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:18.278 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:56:18.278 -07 000000501 INF: FPGA: Recv ZPIEZORD 25232
17-03-17 22:56:18.288 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:18.288 -07 000000610 INF: Z Motor: Piezo is near 33.9 V (nominally 0 to 100 V), expect near 43.5 V, since DAC is at 4.346 V. Piezo Error = -9.6 V.
17-03-17 22:56:18.288 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.4 um, Read 10 ADC samples: Avg = 29586 (-129.6 uncal um), Error = 0.8 uncal um, Median = 29586 (-129.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29580 (-129.6 uncal um), Max = 29591 (-129.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 22:56:18.288 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29586, posNoise = 5, negNoise = 6
17-03-17 22:56:18.288 -07 000000610 INF: Z Motor: After move to -0.130382, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:56:18.288 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 22:56:18.288 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:56:18.288 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:56:18.288 -07 000000486 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:56:18.288 -07 000000429 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:56:18.288 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:56:18.288 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:56:18.288 -07 000000593 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:56:18.288 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:56:18.288 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 22:56:18.288 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:56:18.288 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:56:18.288 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:56:18.298 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:56:18.298 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:56:18.298 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:56:18.298 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:56:18.298 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 22:56:18.298 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 22:56:18.308 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 22:56:18.308 -07 000000593 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 22:56:18.308 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 463 463 223 223 28659 150\n [Camera]
17-03-17 22:56:18.508 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:56:18.968 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 655
17-03-17 22:56:18.968 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 655
17-03-17 22:56:18.978 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:56:18.978 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:56:18.978 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 1094749800, 0x0, 391868352) start.
17-03-17 22:56:18.978 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 655
17-03-17 22:56:18.978 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 655
17-03-17 22:56:18.978 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:56:19.128 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:56:19.128 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-17 22:56:19.168 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28659 851
17-03-17 22:56:19.308 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP turning grn on 998
17-03-17 22:56:19.358 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 1094749800, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 22:56:19.358 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 22:56:19.358 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:56:19.358 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:56:19.358 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 22:56:19.508 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 22:56:19.508 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 22:56:19.508 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:56:19.508 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:56:19.518 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 537 ms.
17-03-17 22:56:19.538 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1221
17-03-17 22:56:19.538 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1221
17-03-17 22:56:19.538 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:56:19.538 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1221
17-03-17 22:56:19.538 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1221
17-03-17 22:56:19.538 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:56:19.548 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:56:19.548 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 22:56:19.548 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:56:19.548 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 22:56:19.728 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP 1413
17-03-17 22:56:19.728 -07 000000593 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:56:19.728 -07 000000610 INF: FPGA: 'CAMDBLSNAP 463 463 223 223 28659 150' command took 2 ms to send, 1415 ms to get response, and 1421 ms overall
17-03-17 22:56:19.728 -07 000000610 INF: Skipping AutoFocus in Tile 13: adopting Best-Z from the cache: -0.130761
17-03-17 22:56:19.728 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.13076 mm
17-03-17 22:56:19.728 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:56:19.738 -07 000000448 INF: Z Motor: Entering MoveAbsStepped (DAC = 28565, sync = True, waitForSettling = False)
17-03-17 22:56:19.738 -07 000000448 INF: Z Motor: Moving to -0.130762 mm, started at -0.130390 mm, distance = -0.37 um
17-03-17 22:56:19.738 -07 000000448 INF: FPGA: Xmit ZDACW 28565\n [Z Motor]
17-03-17 22:56:19.738 -07 000000541 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-17 22:56:19.738 -07 000000541 INF: Y Motor: Moving to 69.8726 mm, started at 69.0273 mm, delta = 0.8453 mm
17-03-17 22:56:19.738 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 22:56:19.748 -07 000000448 INF: FPGA: 'ZDACW 28565' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:19.748 -07 000000448 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:56:19.748 -07 000000547 INF: FPGA: Recv ZDACR 28565
17-03-17 22:56:19.758 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:56:19.758 -07 000000448 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:19.758 -07 000000448 INF: Z Motor: MoveAbsStepped took 19 ms (did NOT wait for settling yet))
17-03-17 22:56:19.758 -07 000000547 INF: FPGA: Recv YRDPOS 141369
17-03-17 22:56:19.768 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-17 22:56:19.768 -07 000000541 INF: Y Motor: Encoder = 141369 = motor step 110444.5 = 69.0278 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:56:19.768 -07 000000541 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:56:19.768 -07 000000541 INF: Y Motor: Moving 1352 steps-31
17-03-17 22:56:19.768 -07 000000541 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:56:19.938 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 392 ms.
17-03-17 22:56:19.938 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 22:56:19.938 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:56:19.938 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 391 ms.
17-03-17 22:56:19.938 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 22:56:19.938 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:56:19.948 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:56:19.948 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-17 22:56:19.948 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:56:19.948 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-17 22:56:20.148 -07 000000486 INF: FPGA: Recv YMVTILE
17-03-17 22:56:20.148 -07 000000541 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 375 ms to get response, and 381 ms overall
17-03-17 22:56:20.188 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:56:20.188 -07 000000409 INF: FPGA: Recv YRDPOS 143080
17-03-17 22:56:20.198 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 22:56:20.198 -07 000000541 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:56:20.198 -07 000000541 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-17 22:56:20.198 -07 000000541 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 381 ms, distance = 0.845 mm, average velocity = 2.219 mm/sec
17-03-17 22:56:21.148 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:56:21.148 -07 000000475 INF: FPGA: Recv YRDPOS 143080
17-03-17 22:56:21.158 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:56:21.158 -07 000000541 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:56:21.178 -07 000000541 INF: Y Motor: After move to 69.872612, error = -0.009331, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:56:21.178 -07 000000541 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:56:21.178 -07 000000541 INF: Y Motor: Moved to 69.8633 after 1444 ms (table move)
17-03-17 22:56:21.178 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.130762 mm (DAC = 28565)
17-03-17 22:56:21.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:21.188 -07 000000618 INF: FPGA: Recv ZSGSRD 29646
17-03-17 22:56:21.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 22:56:21.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:21.188 -07 000000541 INF: FPGA: Recv ZSGSRD 29640
17-03-17 22:56:21.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:56:21.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:21.198 -07 000000415 INF: FPGA: Recv ZSGSRD 29644
17-03-17 22:56:21.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:21.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:21.208 -07 000000501 INF: FPGA: Recv ZSGSRD 29645
17-03-17 22:56:21.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:21.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:21.218 -07 000000462 INF: FPGA: Recv ZSGSRD 29637
17-03-17 22:56:21.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:21.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:21.228 -07 000000547 INF: FPGA: Recv ZSGSRD 29647
17-03-17 22:56:21.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:21.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:21.238 -07 000000576 INF: FPGA: Recv ZSGSRD 29643
17-03-17 22:56:21.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:21.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:21.248 -07 000000415 INF: FPGA: Recv ZSGSRD 29645
17-03-17 22:56:21.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:21.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:21.258 -07 000000501 INF: FPGA: Recv ZSGSRD 29652
17-03-17 22:56:21.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:21.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:21.268 -07 000000623 INF: FPGA: Recv ZSGSRD 29645
17-03-17 22:56:21.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:21.278 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:56:21.278 -07 000000618 INF: FPGA: Recv ZPIEZORD 25323
17-03-17 22:56:21.288 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:21.288 -07 000000610 INF: Z Motor: Piezo is near 34.1 V (nominally 0 to 100 V), expect near 43.6 V, since DAC is at 4.359 V. Piezo Error = -9.5 V.
17-03-17 22:56:21.288 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.8 um, Read 10 ADC samples: Avg = 29644 (-130.0 uncal um), Error = 0.8 uncal um, Median = 29645 (-130.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 29637 (-129.9 uncal um), Max = 29652 (-130.0 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 22:56:21.288 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29644, posNoise = 8, negNoise = 7
17-03-17 22:56:21.288 -07 000000610 INF: Z Motor: After move to -0.130762, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:56:21.288 -07 000000610 INF: Z Motor: Settle wait time = 1447 ms, measure time = 103 ms (allowed 150 ms), total time = 1550 ms
17-03-17 22:56:21.288 -07 000000610 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 22:56:21.338 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1602 ms
17-03-17 22:56:21.338 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:56:21.338 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86328125, Z-position -0.130762696741497. ----------
17-03-17 22:56:21.338 -07 000000610 INF: Cycle	69	Tile	13	Exposure Settings		A	463	G	223	T	223	C	463
17-03-17 22:56:21.338 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28388, sync = True, waitForSettling = True)
17-03-17 22:56:21.338 -07 000000610 INF: Z Motor: Moving to -0.129952 mm, started at -0.130763 mm, distance = 0.81 um
17-03-17 22:56:21.338 -07 000000610 INF: FPGA: Xmit ZDACW 28388\n [Z Motor]
17-03-17 22:56:21.338 -07 000000478 INF: FPGA: Recv ZDACW
17-03-17 22:56:21.348 -07 000000610 INF: FPGA: 'ZDACW 28388' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:56:21.348 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:56:21.348 -07 000000448 INF: FPGA: Recv ZDACR 28388
17-03-17 22:56:21.358 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:21.358 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:56:21.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:21.508 -07 000000576 INF: FPGA: Recv ZSGSRD 29515
17-03-17 22:56:21.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:56:21.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:21.518 -07 000000541 INF: FPGA: Recv ZSGSRD 29517
17-03-17 22:56:21.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:21.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:21.538 -07 000000475 INF: FPGA: Recv ZSGSRD 29514
17-03-17 22:56:21.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:56:21.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:21.548 -07 000000547 INF: FPGA: Recv ZSGSRD 29515
17-03-17 22:56:21.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:21.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:21.558 -07 000000623 INF: FPGA: Recv ZSGSRD 29519
17-03-17 22:56:21.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:21.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:21.568 -07 000000429 INF: FPGA: Recv ZSGSRD 29521
17-03-17 22:56:21.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:21.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:21.578 -07 000000409 INF: FPGA: Recv ZSGSRD 29518
17-03-17 22:56:21.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:21.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:21.588 -07 000000415 INF: FPGA: Recv ZSGSRD 29519
17-03-17 22:56:21.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:21.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:21.598 -07 000000501 INF: FPGA: Recv ZSGSRD 29518
17-03-17 22:56:21.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:21.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:21.608 -07 000000551 INF: FPGA: Recv ZSGSRD 29518
17-03-17 22:56:21.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:21.618 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:56:21.618 -07 000000429 INF: FPGA: Recv ZPIEZORD 25180
17-03-17 22:56:21.628 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:21.628 -07 000000610 INF: Z Motor: Piezo is near 33.8 V (nominally 0 to 100 V), expect near 43.3 V, since DAC is at 4.332 V. Piezo Error = -9.5 V.
17-03-17 22:56:21.628 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.0 um, Read 10 ADC samples: Avg = 29517 (-129.2 uncal um), Error = 0.8 uncal um, Median = 29518 (-129.2 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 29514 (-129.1 uncal um), Max = 29521 (-129.2 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 22:56:21.628 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29517, posNoise = 4, negNoise = 3
17-03-17 22:56:21.628 -07 000000610 INF: Z Motor: After move to -0.129952, error = 0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:56:21.628 -07 000000610 INF: Z Motor: MoveAbsStepped took 286 ms)
17-03-17 22:56:21.628 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:56:21.628 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:56:21.628 -07 000000551 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:56:21.628 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:56:21.628 -07 000000627 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:56:21.628 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:56:21.628 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:56:21.628 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:56:21.628 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:56:21.628 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:56:21.628 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:56:21.628 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:56:21.638 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:56:21.638 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:56:21.638 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:56:21.638 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:56:21.648 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 22:56:21.648 -07 000000627 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 22:56:21.648 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 22:56:21.648 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 22:56:21.648 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 463 463 223 223 28565 150\n [Camera]
17-03-17 22:56:21.848 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:56:21.848 -07 000000478 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 69, FrontChillerTemperature: 3.988112,
17-03-17 22:56:22.018 -07 000000541 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:56:22.018 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 68. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1095, R2=1131, Total=2226. Warn if over 250 bubbles per interval.
17-03-17 22:56:22.308 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 655
17-03-17 22:56:22.308 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 655
17-03-17 22:56:22.308 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:56:22.308 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 655
17-03-17 22:56:22.308 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 655
17-03-17 22:56:22.308 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:56:22.318 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:56:22.318 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) start.
17-03-17 22:56:22.318 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:56:22.318 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-17 22:56:22.498 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28565 848
17-03-17 22:56:22.648 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning grn on 998
17-03-17 22:56:22.688 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 372 ms.
17-03-17 22:56:22.688 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 372 ms.
17-03-17 22:56:22.688 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:56:22.688 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 22:56:22.688 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 22:56:22.688 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:56:22.688 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:56:22.688 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 22:56:22.698 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:56:22.698 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 22:56:22.878 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1223
17-03-17 22:56:22.878 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1223
17-03-17 22:56:22.878 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:56:22.878 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:56:22.878 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1165594328, 0x0, 391868352) start.
17-03-17 22:56:22.878 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1223
17-03-17 22:56:22.878 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1223
17-03-17 22:56:22.878 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:56:22.878 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:56:22.878 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 2331803864, 0x0, 418435064) start.
17-03-17 22:56:23.068 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP 1414
17-03-17 22:56:23.068 -07 000000486 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:56:23.068 -07 000000610 INF: FPGA: 'CAMDBLSNAP 463 463 223 223 28565 150' command took 2 ms to send, 1413 ms to get response, and 1421 ms overall
17-03-17 22:56:23.068 -07 000000610 INF: Skipping AutoFocus in Tile 14: adopting Best-Z from the cache: -0.130324
17-03-17 22:56:23.068 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.13032 mm
17-03-17 22:56:23.178 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:56:23.178 -07 000000551 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-17 22:56:23.178 -07 000000551 INF: Y Motor: Moving to 70.7026 mm, started at 69.8633 mm, delta = 0.8393 mm
17-03-17 22:56:23.178 -07 000000627 INF: Z Motor: Entering MoveAbsStepped (DAC = 28469, sync = True, waitForSettling = False)
17-03-17 22:56:23.188 -07 000000627 INF: Z Motor: Moving to -0.130323 mm, started at -0.129947 mm, distance = -0.38 um
17-03-17 22:56:23.188 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:56:23.188 -07 000000541 INF: FPGA: Recv YRDPOS 143081
17-03-17 22:56:23.198 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:56:23.198 -07 000000551 INF: Y Motor: Encoder = 143081 = motor step 111782.0 = 69.8638 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:56:23.198 -07 000000627 INF: FPGA: Xmit ZDACW 28469\n [Z Motor]
17-03-17 22:56:23.198 -07 000000593 INF: FPGA: Recv ZDACW
17-03-17 22:56:23.198 -07 000000551 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:56:23.198 -07 000000551 INF: Y Motor: Moving 1342 steps-19
17-03-17 22:56:23.208 -07 000000627 INF: FPGA: 'ZDACW 28469' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:56:23.208 -07 000000627 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:56:23.208 -07 000000475 INF: FPGA: Recv ZDACR 28469
17-03-17 22:56:23.218 -07 000000551 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:56:23.218 -07 000000627 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:23.218 -07 000000627 INF: Z Motor: MoveAbsStepped took 30 ms (did NOT wait for settling yet))
17-03-17 22:56:23.268 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1165594328, 0x0, 391868352) end. Duration was 387 ms.
17-03-17 22:56:23.268 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 22:56:23.268 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:56:23.268 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 2331803864, 0x0, 418435064) end. Duration was 386 ms.
17-03-17 22:56:23.268 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 22:56:23.268 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:56:23.268 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:56:23.268 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 22:56:23.268 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:56:23.278 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 22:56:23.588 -07 000000429 INF: FPGA: Recv YMVTILE
17-03-17 22:56:23.588 -07 000000551 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-17 22:56:23.628 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:56:23.638 -07 000000623 INF: FPGA: Recv YRDPOS 144770
17-03-17 22:56:23.638 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 22:56:23.638 -07 000000551 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:56:23.638 -07 000000551 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-17 22:56:23.638 -07 000000551 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.839 mm, average velocity = 2.130 mm/sec
17-03-17 22:56:24.588 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:56:24.588 -07 000000409 INF: FPGA: Recv YRDPOS 144770
17-03-17 22:56:24.598 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:24.598 -07 000000551 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:56:24.618 -07 000000551 INF: Y Motor: After move to 70.702606, error = -0.014130, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:56:24.618 -07 000000551 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:56:24.618 -07 000000551 INF: Y Motor: Moved to 70.6885 after 1434 ms (table move)
17-03-17 22:56:24.618 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.130323 mm (DAC = 28469)
17-03-17 22:56:24.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:24.618 -07 000000482 INF: FPGA: Recv ZSGSRD 29582
17-03-17 22:56:24.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:56:24.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:24.628 -07 000000486 INF: FPGA: Recv ZSGSRD 29579
17-03-17 22:56:24.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:24.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:24.638 -07 000000409 INF: FPGA: Recv ZSGSRD 29579
17-03-17 22:56:24.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:24.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:24.648 -07 000000475 INF: FPGA: Recv ZSGSRD 29576
17-03-17 22:56:24.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:24.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:24.658 -07 000000382 INF: FPGA: Recv ZSGSRD 29580
17-03-17 22:56:24.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:24.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:24.668 -07 000000501 INF: FPGA: Recv ZSGSRD 29578
17-03-17 22:56:24.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:24.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:24.678 -07 000000627 INF: FPGA: Recv ZSGSRD 29576
17-03-17 22:56:24.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:24.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:24.688 -07 000000551 INF: FPGA: Recv ZSGSRD 29580
17-03-17 22:56:24.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:24.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:24.698 -07 000000475 INF: FPGA: Recv ZSGSRD 29570
17-03-17 22:56:24.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:24.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:24.708 -07 000000415 INF: FPGA: Recv ZSGSRD 29580
17-03-17 22:56:24.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:24.718 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:56:24.718 -07 000000482 INF: FPGA: Recv ZPIEZORD 25241
17-03-17 22:56:24.728 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:24.728 -07 000000610 INF: Z Motor: Piezo is near 33.9 V (nominally 0 to 100 V), expect near 43.4 V, since DAC is at 4.344 V. Piezo Error = -9.5 V.
17-03-17 22:56:24.728 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.3 um, Read 10 ADC samples: Avg = 29578 (-129.6 uncal um), Error = 0.8 uncal um, Median = 29579 (-129.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29570 (-129.5 uncal um), Max = 29582 (-129.6 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 22:56:24.728 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29578, posNoise = 4, negNoise = 8
17-03-17 22:56:24.728 -07 000000610 INF: Z Motor: After move to -0.130323, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:56:24.728 -07 000000610 INF: Z Motor: Settle wait time = 1436 ms, measure time = 104 ms (allowed 150 ms), total time = 1540 ms
17-03-17 22:56:24.728 -07 000000610 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 22:56:24.778 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1704 ms
17-03-17 22:56:24.778 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:56:24.778 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.6884765625, Z-position -0.130338698740141. ----------
17-03-17 22:56:24.778 -07 000000610 INF: Cycle	69	Tile	14	Exposure Settings		A	463	G	223	T	223	C	463
17-03-17 22:56:24.778 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28293, sync = True, waitForSettling = True)
17-03-17 22:56:24.778 -07 000000610 INF: Z Motor: Moving to -0.129517 mm, started at -0.130339 mm, distance = 0.82 um
17-03-17 22:56:24.778 -07 000000610 INF: FPGA: Xmit ZDACW 28293\n [Z Motor]
17-03-17 22:56:24.778 -07 000000623 INF: FPGA: Recv ZDACW
17-03-17 22:56:24.788 -07 000000610 INF: FPGA: 'ZDACW 28293' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 22:56:24.788 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:56:24.788 -07 000000593 INF: FPGA: Recv ZDACR 28293
17-03-17 22:56:24.798 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:24.798 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:56:24.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:24.948 -07 000000627 INF: FPGA: Recv ZSGSRD 29446
17-03-17 22:56:24.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:56:24.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:24.958 -07 000000502 INF: FPGA: Recv ZSGSRD 29453
17-03-17 22:56:24.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:24.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:24.968 -07 000000501 INF: FPGA: Recv ZSGSRD 29453
17-03-17 22:56:24.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:24.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:24.978 -07 000000478 INF: FPGA: Recv ZSGSRD 29448
17-03-17 22:56:24.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:24.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:24.988 -07 000000547 INF: FPGA: Recv ZSGSRD 29451
17-03-17 22:56:24.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:24.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:24.998 -07 000000429 INF: FPGA: Recv ZSGSRD 29449
17-03-17 22:56:25.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:25.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:25.008 -07 000000618 INF: FPGA: Recv ZSGSRD 29457
17-03-17 22:56:25.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:25.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:25.018 -07 000000462 INF: FPGA: Recv ZSGSRD 29449
17-03-17 22:56:25.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:25.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:25.028 -07 000000576 INF: FPGA: Recv ZSGSRD 29449
17-03-17 22:56:25.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:25.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:25.038 -07 000000547 INF: FPGA: Recv ZSGSRD 29446
17-03-17 22:56:25.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:25.048 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:56:25.048 -07 000000475 INF: FPGA: Recv ZPIEZORD 25064
17-03-17 22:56:25.058 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:25.058 -07 000000610 INF: Z Motor: Piezo is near 33.5 V (nominally 0 to 100 V), expect near 43.2 V, since DAC is at 4.317 V. Piezo Error = -9.6 V.
17-03-17 22:56:25.058 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.5 um, Read 10 ADC samples: Avg = 29450 (-128.7 uncal um), Error = 0.8 uncal um, Median = 29449 (-128.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29446 (-128.7 uncal um), Max = 29457 (-128.8 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 22:56:25.058 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29450, posNoise = 7, negNoise = 4
17-03-17 22:56:25.058 -07 000000610 INF: Z Motor: After move to -0.129517, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:56:25.058 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 22:56:25.058 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:56:25.058 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:56:25.058 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:56:25.058 -07 000000486 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:56:25.058 -07 000000448 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:56:25.058 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:56:25.058 -07 000000551 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:56:25.058 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:56:25.058 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:56:25.058 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:56:25.058 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:56:25.058 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:56:25.068 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 22:56:25.068 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:56:25.068 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:56:25.068 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:56:25.078 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 22:56:25.078 -07 000000551 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 22:56:25.078 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 22:56:25.078 -07 000000448 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 22:56:25.088 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 463 463 223 223 28469 150\n [Camera]
17-03-17 22:56:25.288 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:56:25.748 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 655
17-03-17 22:56:25.748 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 655
17-03-17 22:56:25.748 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:56:25.748 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 655
17-03-17 22:56:25.748 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 655
17-03-17 22:56:25.748 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:56:25.748 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:56:25.748 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 22:56:25.758 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:56:25.758 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 22:56:25.938 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28469 848
17-03-17 22:56:26.088 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP turning grn on 998
17-03-17 22:56:26.128 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 372 ms.
17-03-17 22:56:26.128 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-17 22:56:26.128 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:56:26.128 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 375 ms.
17-03-17 22:56:26.128 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-17 22:56:26.128 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:56:26.138 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 22:56:26.138 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 22:56:26.138 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 22:56:26.138 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 22:56:26.308 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1221
17-03-17 22:56:26.308 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1221
17-03-17 22:56:26.318 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:56:26.318 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1221
17-03-17 22:56:26.318 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1221
17-03-17 22:56:26.318 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:56:26.318 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:56:26.318 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-17 22:56:26.328 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:56:26.328 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 1094749800, 0x0, 418435064) start.
17-03-17 22:56:26.508 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP 1414
17-03-17 22:56:26.508 -07 000000541 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:56:26.508 -07 000000610 INF: FPGA: 'CAMDBLSNAP 463 463 223 223 28469 150' command took 2 ms to send, 1413 ms to get response, and 1423 ms overall
17-03-17 22:56:26.508 -07 000000610 INF: Skipping AutoFocus in Tile 15: adopting Best-Z from the cache: -0.129733
17-03-17 22:56:26.508 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.12973 mm
17-03-17 22:56:26.508 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:56:26.508 -07 000000501 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-17 22:56:26.508 -07 000000501 INF: Y Motor: Moving to 71.5326 mm, started at 70.6885 mm, delta = 0.8441 mm
17-03-17 22:56:26.508 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:56:26.508 -07 000000576 INF: Z Motor: Entering MoveAbsStepped (DAC = 28340, sync = True, waitForSettling = False)
17-03-17 22:56:26.508 -07 000000576 INF: Z Motor: Moving to -0.129732 mm, started at -0.129516 mm, distance = -0.22 um
17-03-17 22:56:26.518 -07 000000576 INF: FPGA: Xmit ZDACW 28340\n [Z Motor]
17-03-17 22:56:26.518 -07 000000486 INF: FPGA: Recv YRDPOS 144771
17-03-17 22:56:26.518 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-17 22:56:26.518 -07 000000501 INF: Y Motor: Encoder = 144771 = motor step 113102.3 = 70.6890 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:56:26.518 -07 000000547 INF: FPGA: Recv ZDACW
17-03-17 22:56:26.518 -07 000000501 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:56:26.518 -07 000000501 INF: Y Motor: Moving 1350 steps-29
17-03-17 22:56:26.528 -07 000000576 INF: FPGA: 'ZDACW 28340' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:56:26.528 -07 000000501 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:56:26.538 -07 000000576 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:56:26.538 -07 000000541 INF: FPGA: Recv ZDACR 28340
17-03-17 22:56:26.548 -07 000000576 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:56:26.548 -07 000000576 INF: Z Motor: MoveAbsStepped took 30 ms (did NOT wait for settling yet))
17-03-17 22:56:26.698 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 22:56:26.698 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 22:56:26.698 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:56:26.698 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 1094749800, 0x0, 418435064) end. Duration was 373 ms.
17-03-17 22:56:26.698 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-17 22:56:26.698 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:56:26.698 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:56:26.698 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 22:56:26.698 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:56:26.708 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 22:56:26.898 -07 000000502 INF: FPGA: Recv YMVTILE
17-03-17 22:56:26.898 -07 000000501 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 381 ms overall
17-03-17 22:56:26.938 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:56:26.948 -07 000000478 INF: FPGA: Recv YRDPOS 146471
17-03-17 22:56:26.958 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:56:26.958 -07 000000501 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:56:26.958 -07 000000501 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 22:56:26.958 -07 000000501 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 382 ms, distance = 0.844 mm, average velocity = 2.210 mm/sec
17-03-17 22:56:27.018 -07 000000409 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:56:27.018 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 68. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1095, R2=1131, Total=2226. Warn if over 250 bubbles per interval.
17-03-17 22:56:27.218 -07 000000627 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 69, FrontChillerTemperature: 3.99219,
17-03-17 22:56:27.908 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:56:27.908 -07 000000541 INF: FPGA: Recv YRDPOS 146471
17-03-17 22:56:27.918 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:27.918 -07 000000501 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:56:27.938 -07 000000501 INF: Y Motor: After move to 71.532608, error = -0.013565, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:56:27.938 -07 000000501 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:56:27.938 -07 000000501 INF: Y Motor: Moved to 71.5190 after 1427 ms (table move)
17-03-17 22:56:27.938 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.129732 mm (DAC = 28340)
17-03-17 22:56:27.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:27.948 -07 000000478 INF: FPGA: Recv ZSGSRD 29494
17-03-17 22:56:27.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 22:56:27.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:27.948 -07 000000475 INF: FPGA: Recv ZSGSRD 29482
17-03-17 22:56:27.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:56:27.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:27.958 -07 000000429 INF: FPGA: Recv ZSGSRD 29484
17-03-17 22:56:27.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:27.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:27.968 -07 000000462 INF: FPGA: Recv ZSGSRD 29490
17-03-17 22:56:27.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:27.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:27.978 -07 000000415 INF: FPGA: Recv ZSGSRD 29485
17-03-17 22:56:27.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:27.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:27.988 -07 000000448 INF: FPGA: Recv ZSGSRD 29483
17-03-17 22:56:27.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:27.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:27.998 -07 000000618 INF: FPGA: Recv ZSGSRD 29480
17-03-17 22:56:28.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:28.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:28.008 -07 000000429 INF: FPGA: Recv ZSGSRD 29475
17-03-17 22:56:28.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:28.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:28.018 -07 000000486 INF: FPGA: Recv ZSGSRD 29482
17-03-17 22:56:28.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:28.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:28.028 -07 000000576 INF: FPGA: Recv ZSGSRD 29484
17-03-17 22:56:28.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:28.038 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:56:28.038 -07 000000627 INF: FPGA: Recv ZPIEZORD 25151
17-03-17 22:56:28.048 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:28.048 -07 000000610 INF: Z Motor: Piezo is near 33.7 V (nominally 0 to 100 V), expect near 43.2 V, since DAC is at 4.324 V. Piezo Error = -9.5 V.
17-03-17 22:56:28.048 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.7 um, Read 10 ADC samples: Avg = 29484 (-129.0 uncal um), Error = 0.8 uncal um, Median = 29484 (-129.0 uncal um), StdDev = 5 (0.0 uncal um), Range = 19 (0.1 uncal um), Min = 29475 (-128.9 uncal um), Max = 29494 (-129.0 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 22:56:28.048 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29484, posNoise = 10, negNoise = 9
17-03-17 22:56:28.048 -07 000000610 INF: Z Motor: After move to -0.129732, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:56:28.048 -07 000000610 INF: Z Motor: Settle wait time = 1429 ms, measure time = 102 ms (allowed 150 ms), total time = 1531 ms
17-03-17 22:56:28.048 -07 000000610 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 22:56:28.098 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1582 ms
17-03-17 22:56:28.098 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:56:28.098 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.51904296875, Z-position -0.129734822798815. ----------
17-03-17 22:56:28.098 -07 000000610 INF: Cycle	69	Tile	15	Exposure Settings		A	463	G	223	T	223	C	463
17-03-17 22:56:28.098 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28163, sync = True, waitForSettling = True)
17-03-17 22:56:28.098 -07 000000610 INF: Z Motor: Moving to -0.128922 mm, started at -0.129735 mm, distance = 0.81 um
17-03-17 22:56:28.098 -07 000000610 INF: FPGA: Xmit ZDACW 28163\n [Z Motor]
17-03-17 22:56:28.098 -07 000000486 INF: FPGA: Recv ZDACW
17-03-17 22:56:28.108 -07 000000610 INF: FPGA: 'ZDACW 28163' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 22:56:28.108 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:56:28.108 -07 000000576 INF: FPGA: Recv ZDACR 28163
17-03-17 22:56:28.118 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:28.118 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:56:28.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:28.268 -07 000000627 INF: FPGA: Recv ZSGSRD 29358
17-03-17 22:56:28.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:28.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:28.278 -07 000000623 INF: FPGA: Recv ZSGSRD 29365
17-03-17 22:56:28.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:28.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:28.288 -07 000000482 INF: FPGA: Recv ZSGSRD 29358
17-03-17 22:56:28.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:28.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:28.298 -07 000000547 INF: FPGA: Recv ZSGSRD 29357
17-03-17 22:56:28.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:28.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:28.308 -07 000000576 INF: FPGA: Recv ZSGSRD 29358
17-03-17 22:56:28.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:28.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:28.318 -07 000000541 INF: FPGA: Recv ZSGSRD 29360
17-03-17 22:56:28.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:28.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:28.328 -07 000000623 INF: FPGA: Recv ZSGSRD 29358
17-03-17 22:56:28.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:28.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:28.338 -07 000000551 INF: FPGA: Recv ZSGSRD 29354
17-03-17 22:56:28.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:28.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:28.348 -07 000000547 INF: FPGA: Recv ZSGSRD 29362
17-03-17 22:56:28.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:28.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:28.358 -07 000000475 INF: FPGA: Recv ZSGSRD 29362
17-03-17 22:56:28.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:28.368 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:56:28.368 -07 000000448 INF: FPGA: Recv ZPIEZORD 24962
17-03-17 22:56:28.378 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:28.378 -07 000000610 INF: Z Motor: Piezo is near 33.3 V (nominally 0 to 100 V), expect near 43.0 V, since DAC is at 4.297 V. Piezo Error = -9.6 V.
17-03-17 22:56:28.378 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.9 um, Read 10 ADC samples: Avg = 29359 (-128.2 uncal um), Error = 0.8 uncal um, Median = 29358 (-128.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29354 (-128.1 uncal um), Max = 29365 (-128.2 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 22:56:28.378 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29359, posNoise = 6, negNoise = 5
17-03-17 22:56:28.378 -07 000000610 INF: Z Motor: After move to -0.128922, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:56:28.378 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 22:56:28.378 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:56:28.378 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:56:28.378 -07 000000475 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:56:28.378 -07 000000547 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:56:28.378 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:56:28.378 -07 000000486 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:56:28.378 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:56:28.378 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:56:28.378 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:56:28.378 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:56:28.378 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:56:28.378 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:56:28.388 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:56:28.388 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:56:28.388 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:56:28.388 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:56:28.398 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 22:56:28.398 -07 000000547 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 22:56:28.398 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 22:56:28.398 -07 000000486 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 22:56:28.408 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 463 463 223 223 28340 150\n [Camera]
17-03-17 22:56:28.598 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:56:29.068 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 657
17-03-17 22:56:29.068 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 657
17-03-17 22:56:29.068 -07 000000409 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:56:29.068 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 658
17-03-17 22:56:29.068 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 658
17-03-17 22:56:29.068 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:56:29.078 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:56:29.078 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 22:56:29.078 -07 000000409 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:56:29.078 -07 000000409 INF: Camera: sBCa_ReadImage(785074288, 1130172064, 0x0, 391868352) start.
17-03-17 22:56:29.258 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28340 848
17-03-17 22:56:29.408 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning grn on 998
17-03-17 22:56:29.458 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 376 ms.
17-03-17 22:56:29.458 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-17 22:56:29.458 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:56:29.458 -07 000000409 INF: Camera: sBCa_ReadImage(785074288, 1130172064, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 22:56:29.458 -07 000000409 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 22:56:29.458 -07 000000409 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:56:29.458 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:56:29.458 -07 000000409 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:56:29.458 -07 000000409 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 22:56:29.468 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 22:56:29.628 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1221
17-03-17 22:56:29.628 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1221
17-03-17 22:56:29.628 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:56:29.628 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:56:29.638 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 2367226128, 0x0, 391868352) start.
17-03-17 22:56:29.638 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1221
17-03-17 22:56:29.638 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1221
17-03-17 22:56:29.638 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:56:29.638 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:56:29.638 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 22:56:29.828 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP 1414
17-03-17 22:56:29.828 -07 000000593 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:56:29.828 -07 000000610 INF: FPGA: 'CAMDBLSNAP 463 463 223 223 28340 150' command took 2 ms to send, 1410 ms to get response, and 1420 ms overall
17-03-17 22:56:29.828 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 22:56:29.828 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.51904296875, Z-Position -0.128931796281095. ------
17-03-17 22:56:29.958 -07 000000448 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.13523 mm
17-03-17 22:56:29.958 -07 000000448 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:56:29.958 -07 000000482 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:56:29.958 -07 000000429 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:56:29.958 -07 000000462 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-17 22:56:29.958 -07 000000462 INF: Y Motor: Moving to 72.3626 mm, started at 71.5190 mm, delta = 0.8436 mm
17-03-17 22:56:29.958 -07 000000623 INF: Z Motor: Entering MoveAbsStepped (DAC = 29541, sync = True, waitForSettling = False)
17-03-17 22:56:29.958 -07 000000623 INF: Z Motor: Moving to -0.135230 mm, started at -0.128932 mm, distance = -6.30 um
17-03-17 22:56:29.968 -07 000000482 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:29.968 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:56:29.968 -07 000000415 INF: FPGA: Recv YRDPOS 146471
17-03-17 22:56:29.978 -07 000000623 INF: FPGA: Xmit ZDACW 29541\n [Z Motor]
17-03-17 22:56:29.978 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 22:56:29.978 -07 000000462 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:56:29.978 -07 000000462 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:56:29.978 -07 000000462 INF: Y Motor: Moving 1350 steps-28
17-03-17 22:56:29.978 -07 000000502 INF: FPGA: Recv ZDACW
17-03-17 22:56:29.988 -07 000000623 INF: FPGA: 'ZDACW 29541' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-17 22:56:29.988 -07 000000482 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:56:29.998 -07 000000462 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:56:30.008 -07 000000623 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:56:30.008 -07 000000618 INF: FPGA: Recv ZDACR 29541
17-03-17 22:56:30.018 -07 000000623 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:56:30.018 -07 000000623 INF: Z Motor: MoveAbsStepped took 55 ms (did NOT wait for settling yet))
17-03-17 22:56:30.018 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 2367226128, 0x0, 391868352) end. Duration was 387 ms.
17-03-17 22:56:30.018 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 22:56:30.018 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:56:30.018 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 385 ms.
17-03-17 22:56:30.018 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-17 22:56:30.018 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:56:30.028 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 22:56:30.028 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 22:56:30.028 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 22:56:30.038 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 22:56:30.188 -07 000000475 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:56:30.188 -07 000000482 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-17 22:56:30.368 -07 000000593 INF: FPGA: Recv YMVTILE
17-03-17 22:56:30.368 -07 000000462 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 22:56:30.408 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:56:30.418 -07 000000627 INF: FPGA: Recv YRDPOS 148172
17-03-17 22:56:30.418 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 22:56:30.418 -07 000000462 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:56:30.418 -07 000000462 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-17 22:56:30.418 -07 000000462 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.844 mm, average velocity = 2.120 mm/sec
17-03-17 22:56:31.368 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:56:31.368 -07 000000409 INF: FPGA: Recv YRDPOS 148172
17-03-17 22:56:31.378 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:31.378 -07 000000462 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:56:31.398 -07 000000462 INF: Y Motor: After move to 72.362610, error = -0.013000, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:56:31.398 -07 000000462 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:56:31.398 -07 000000462 INF: Y Motor: Moved to 72.3496 after 1442 ms (table move)
17-03-17 22:56:31.408 -07 000000448 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135230 mm (DAC = 29541)
17-03-17 22:56:31.408 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:31.408 -07 000000478 INF: FPGA: Recv ZSGSRD 30340
17-03-17 22:56:31.418 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:31.418 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:31.418 -07 000000409 INF: FPGA: Recv ZSGSRD 30340
17-03-17 22:56:31.428 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:31.428 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:31.428 -07 000000576 INF: FPGA: Recv ZSGSRD 30338
17-03-17 22:56:31.438 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:31.438 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:31.438 -07 000000627 INF: FPGA: Recv ZSGSRD 30340
17-03-17 22:56:31.448 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:31.448 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:31.448 -07 000000551 INF: FPGA: Recv ZSGSRD 30344
17-03-17 22:56:31.458 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:31.458 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:31.458 -07 000000547 INF: FPGA: Recv ZSGSRD 30341
17-03-17 22:56:31.468 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:31.468 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:31.468 -07 000000478 INF: FPGA: Recv ZSGSRD 30341
17-03-17 22:56:31.478 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:31.478 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:31.478 -07 000000502 INF: FPGA: Recv ZSGSRD 30340
17-03-17 22:56:31.488 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:31.488 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:31.488 -07 000000627 INF: FPGA: Recv ZSGSRD 30346
17-03-17 22:56:31.498 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:31.498 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:31.498 -07 000000551 INF: FPGA: Recv ZSGSRD 30337
17-03-17 22:56:31.508 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:31.508 -07 000000448 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:56:31.508 -07 000000501 INF: FPGA: Recv ZPIEZORD 26299
17-03-17 22:56:31.518 -07 000000448 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:31.518 -07 000000448 INF: Z Motor: Piezo is near 36.2 V (nominally 0 to 100 V), expect near 45.1 V, since DAC is at 4.508 V. Piezo Error = -8.9 V.
17-03-17 22:56:31.518 -07 000000448 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.2 um, Read 10 ADC samples: Avg = 30341 (-134.4 uncal um), Error = 0.8 uncal um, Median = 30340 (-134.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 30337 (-134.4 uncal um), Max = 30346 (-134.5 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 22:56:31.518 -07 000000448 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30341, posNoise = 5, negNoise = 4
17-03-17 22:56:31.518 -07 000000448 INF: Z Motor: After move to -0.135230, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:56:31.518 -07 000000448 INF: Z Motor: Settle wait time = 1445 ms, measure time = 111 ms (allowed 150 ms), total time = 1556 ms
17-03-17 22:56:31.518 -07 000000448 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-17 22:56:31.558 -07 000000448 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1600 ms
17-03-17 22:56:31.558 -07 000000448 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:56:31.558 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:56:31.558 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:56:31.558 -07 000000415 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:56:31.558 -07 000000478 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:56:31.558 -07 000000547 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:56:31.558 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:56:31.558 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:56:31.558 -07 000000547 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:56:31.568 -07 000000547 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:56:31.568 -07 000000547 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:56:31.578 -07 000000547 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 22:56:31.578 -07 000000547 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 22:56:31.578 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:56:31.628 -07 000000415 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:56:31.828 -07 000000475 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:56:31.828 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:56:31.828 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:56:31.828 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 22:56:31.858 -07 000000541 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:56:31.868 -07 000000382 INF: FPGA: Recv CAMSNAP
17-03-17 22:56:31.868 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 283 ms to get response, and 287 ms overall
17-03-17 22:56:31.948 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 120 ms.
17-03-17 22:56:31.948 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:56:31.948 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:56:31.948 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 122 ms.
17-03-17 22:56:31.968 -07 000000551 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:56:31.968 -07 000000475 INF: Autofocus start
17-03-17 22:56:31.968 -07 000000475 INF: MeasureProfile start
17-03-17 22:56:31.968 -07 000000623 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:56:31.978 -07 000000551 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:56:31.978 -07 000000551 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:56:31.988 -07 000000475 INF: MeasureProfile done
17-03-17 22:56:31.988 -07 000000475 INF: X=16  Z correction [um]=0.0530179
17-03-17 22:56:31.988 -07 000000475 INF: Autofocus finished
17-03-17 22:56:32.018 -07 000000415 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:56:32.018 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 68. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1095, R2=1131, Total=2226. Warn if over 250 bubbles per interval.
17-03-17 22:56:32.178 -07 000000501 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:56:32.178 -07 000000551 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:56:32.178 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.349609375, Z-position -0.135240372604304. ----------
17-03-17 22:56:32.178 -07 000000610 INF: Cycle	69	Tile	16	Exposure Settings		A	463	G	223	T	223	C	463
17-03-17 22:56:32.188 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28065, sync = True, waitForSettling = True)
17-03-17 22:56:32.188 -07 000000610 INF: Z Motor: Moving to -0.128473 mm, started at -0.135240 mm, distance = 6.77 um
17-03-17 22:56:32.188 -07 000000610 INF: FPGA: Xmit ZDACW 28065\n [Z Motor]
17-03-17 22:56:32.188 -07 000000486 INF: FPGA: Recv ZDACW
17-03-17 22:56:32.198 -07 000000610 INF: FPGA: 'ZDACW 28065' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:56:32.198 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:56:32.198 -07 000000501 INF: FPGA: Recv ZDACR 28065
17-03-17 22:56:32.208 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:32.208 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:56:32.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:32.358 -07 000000576 INF: FPGA: Recv ZSGSRD 29284
17-03-17 22:56:32.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:56:32.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:32.368 -07 000000409 INF: FPGA: Recv ZSGSRD 29284
17-03-17 22:56:32.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:32.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:32.378 -07 000000551 INF: FPGA: Recv ZSGSRD 29289
17-03-17 22:56:32.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:32.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:32.388 -07 000000623 INF: FPGA: Recv ZSGSRD 29292
17-03-17 22:56:32.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:32.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:32.398 -07 000000478 INF: FPGA: Recv ZSGSRD 29291
17-03-17 22:56:32.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:32.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:32.408 -07 000000593 INF: FPGA: Recv ZSGSRD 29290
17-03-17 22:56:32.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:32.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:32.418 -07 000000551 INF: FPGA: Recv ZSGSRD 29287
17-03-17 22:56:32.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:32.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:32.428 -07 000000415 INF: FPGA: Recv ZSGSRD 29290
17-03-17 22:56:32.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:32.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:32.438 -07 000000478 INF: FPGA: Recv ZSGSRD 29291
17-03-17 22:56:32.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:32.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:32.448 -07 000000502 INF: FPGA: Recv ZSGSRD 29288
17-03-17 22:56:32.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:32.458 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:56:32.458 -07 000000482 INF: FPGA: Recv ZPIEZORD 24906
17-03-17 22:56:32.468 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:32.468 -07 000000610 INF: Z Motor: Piezo is near 33.2 V (nominally 0 to 100 V), expect near 42.8 V, since DAC is at 4.282 V. Piezo Error = -9.6 V.
17-03-17 22:56:32.468 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.5 um, Read 10 ADC samples: Avg = 29289 (-127.7 uncal um), Error = 0.8 uncal um, Median = 29290 (-127.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29284 (-127.7 uncal um), Max = 29292 (-127.7 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 22:56:32.468 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29289, posNoise = 3, negNoise = 5
17-03-17 22:56:32.468 -07 000000610 INF: Z Motor: After move to -0.128473, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:56:32.468 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 22:56:32.468 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:56:32.468 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:56:32.468 -07 000000547 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:56:32.468 -07 000000415 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:56:32.468 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:56:32.468 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:56:32.468 -07 000000475 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:56:32.468 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:56:32.468 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:56:32.468 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:56:32.468 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 22:56:32.468 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:56:32.468 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:56:32.468 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:56:32.468 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:56:32.478 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:56:32.478 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 22:56:32.478 -07 000000415 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 22:56:32.488 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 22:56:32.488 -07 000000475 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 22:56:32.488 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 463 463 223 223 28242 150\n [Camera]
17-03-17 22:56:32.598 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 69, FrontChillerTemperature: 4.014009,
17-03-17 22:56:32.688 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:56:33.148 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 655
17-03-17 22:56:33.148 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 655
17-03-17 22:56:33.148 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:56:33.148 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 655
17-03-17 22:56:33.148 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 655
17-03-17 22:56:33.158 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:56:33.158 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:56:33.158 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-17 22:56:33.158 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:56:33.158 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 22:56:33.338 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28242 848
17-03-17 22:56:33.488 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning grn on 998
17-03-17 22:56:33.528 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 367 ms.
17-03-17 22:56:33.528 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 368 ms.
17-03-17 22:56:33.528 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:56:33.528 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 373 ms.
17-03-17 22:56:33.528 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 374 ms.
17-03-17 22:56:33.528 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:56:33.538 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:56:33.538 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 22:56:33.538 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 22:56:33.538 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 22:56:33.718 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1221
17-03-17 22:56:33.718 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1221
17-03-17 22:56:33.718 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:56:33.718 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1221
17-03-17 22:56:33.718 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1221
17-03-17 22:56:33.718 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:56:33.728 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:56:33.728 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-17 22:56:33.728 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:56:33.728 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 22:56:33.908 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP 1414
17-03-17 22:56:33.908 -07 000000462 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:56:33.908 -07 000000610 INF: FPGA: 'CAMDBLSNAP 463 463 223 223 28242 150' command took 2 ms to send, 1414 ms to get response, and 1421 ms overall
17-03-17 22:56:33.908 -07 000000610 INF: Skipping AutoFocus in Tile 17: adopting Best-Z from the cache: -0.129048
17-03-17 22:56:33.908 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.12905 mm
17-03-17 22:56:33.908 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:56:33.908 -07 000000482 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-17 22:56:33.908 -07 000000482 INF: Y Motor: Moving to 73.1926 mm, started at 72.3496 mm, delta = 0.8430 mm
17-03-17 22:56:33.908 -07 000000618 INF: Z Motor: Entering MoveAbsStepped (DAC = 28191, sync = True, waitForSettling = False)
17-03-17 22:56:33.908 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:56:33.908 -07 000000618 INF: Z Motor: Moving to -0.129050 mm, started at -0.128482 mm, distance = -0.57 um
17-03-17 22:56:33.918 -07 000000618 INF: FPGA: Xmit ZDACW 28191\n [Z Motor]
17-03-17 22:56:33.918 -07 000000462 INF: FPGA: Recv YRDPOS 148173
17-03-17 22:56:33.918 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-17 22:56:33.918 -07 000000482 INF: Y Motor: Encoder = 148173 = motor step 115760.2 = 72.3501 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:56:33.918 -07 000000576 INF: FPGA: Recv ZDACW
17-03-17 22:56:33.918 -07 000000482 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:56:33.918 -07 000000482 INF: Y Motor: Moving 1348 steps-27
17-03-17 22:56:33.928 -07 000000618 INF: FPGA: 'ZDACW 28191' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:33.928 -07 000000618 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:56:33.928 -07 000000415 INF: FPGA: Recv ZDACR 28191
17-03-17 22:56:33.938 -07 000000618 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:33.938 -07 000000482 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:56:33.938 -07 000000618 INF: Z Motor: MoveAbsStepped took 20 ms (did NOT wait for settling yet))
17-03-17 22:56:34.118 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 395 ms.
17-03-17 22:56:34.118 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 22:56:34.118 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:56:34.128 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 393 ms.
17-03-17 22:56:34.128 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 22:56:34.128 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:56:34.128 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:56:34.128 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-17 22:56:34.128 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:56:34.138 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-17 22:56:34.308 -07 000000541 INF: FPGA: Recv YMVTILE
17-03-17 22:56:34.308 -07 000000482 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 388 ms overall
17-03-17 22:56:34.348 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:56:34.358 -07 000000501 INF: FPGA: Recv YRDPOS 149864
17-03-17 22:56:34.358 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 22:56:34.358 -07 000000482 INF: Y Motor: Encoder = 149864 = motor step 117081.3 = 73.1758 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:56:34.358 -07 000000482 INF: Y Motor: Position error before settling (table move) = -34 encoder counts (-0.017 mm)
17-03-17 22:56:34.358 -07 000000482 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.843 mm, average velocity = 2.173 mm/sec
17-03-17 22:56:35.308 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:56:35.308 -07 000000415 INF: FPGA: Recv YRDPOS 149865
17-03-17 22:56:35.318 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:56:35.318 -07 000000482 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:56:35.338 -07 000000482 INF: Y Motor: After move to 73.192604, error = -0.016335, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:56:35.338 -07 000000482 INF: Y Motor: Position error after settling (table move) = -33 encoder counts (-0.016 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 22:56:35.338 -07 000000482 INF: Y Motor: Moved to 73.1763 after 1426 ms (table move)
17-03-17 22:56:35.338 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.129050 mm (DAC = 28191)
17-03-17 22:56:35.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:35.348 -07 000000478 INF: FPGA: Recv ZSGSRD 29380
17-03-17 22:56:35.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 22:56:35.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:35.348 -07 000000462 INF: FPGA: Recv ZSGSRD 29385
17-03-17 22:56:35.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:56:35.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:35.358 -07 000000593 INF: FPGA: Recv ZSGSRD 29374
17-03-17 22:56:35.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:35.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:35.368 -07 000000576 INF: FPGA: Recv ZSGSRD 29372
17-03-17 22:56:35.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:35.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:35.378 -07 000000627 INF: FPGA: Recv ZSGSRD 29376
17-03-17 22:56:35.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:35.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:35.388 -07 000000429 INF: FPGA: Recv ZSGSRD 29381
17-03-17 22:56:35.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:35.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:35.398 -07 000000551 INF: FPGA: Recv ZSGSRD 29382
17-03-17 22:56:35.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:35.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:35.408 -07 000000593 INF: FPGA: Recv ZSGSRD 29379
17-03-17 22:56:35.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:35.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:35.418 -07 000000478 INF: FPGA: Recv ZSGSRD 29373
17-03-17 22:56:35.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:35.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:35.428 -07 000000623 INF: FPGA: Recv ZSGSRD 29379
17-03-17 22:56:35.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:35.438 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:56:35.438 -07 000000627 INF: FPGA: Recv ZPIEZORD 25108
17-03-17 22:56:35.448 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:35.448 -07 000000610 INF: Z Motor: Piezo is near 33.6 V (nominally 0 to 100 V), expect near 43.0 V, since DAC is at 4.302 V. Piezo Error = -9.4 V.
17-03-17 22:56:35.448 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.1 um, Read 10 ADC samples: Avg = 29378 (-128.3 uncal um), Error = 0.8 uncal um, Median = 29379 (-128.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29372 (-128.2 uncal um), Max = 29385 (-128.3 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 22:56:35.448 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29378, posNoise = 7, negNoise = 6
17-03-17 22:56:35.448 -07 000000610 INF: Z Motor: After move to -0.129050, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:56:35.448 -07 000000610 INF: Z Motor: Settle wait time = 1428 ms, measure time = 102 ms (allowed 150 ms), total time = 1530 ms
17-03-17 22:56:35.448 -07 000000610 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 22:56:35.498 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1583 ms
17-03-17 22:56:35.498 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:56:35.498 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.17626953125, Z-position -0.129053856311788. ----------
17-03-17 22:56:35.498 -07 000000610 INF: Cycle	69	Tile	17	Exposure Settings		A	463	G	223	T	223	C	463
17-03-17 22:56:35.498 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28014, sync = True, waitForSettling = True)
17-03-17 22:56:35.498 -07 000000610 INF: Z Motor: Moving to -0.128240 mm, started at -0.129054 mm, distance = 0.81 um
17-03-17 22:56:35.498 -07 000000610 INF: FPGA: Xmit ZDACW 28014\n [Z Motor]
17-03-17 22:56:35.498 -07 000000429 INF: FPGA: Recv ZDACW
17-03-17 22:56:35.508 -07 000000610 INF: FPGA: 'ZDACW 28014' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 22:56:35.508 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:56:35.508 -07 000000462 INF: FPGA: Recv ZDACR 28014
17-03-17 22:56:35.518 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:35.518 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:56:35.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:35.668 -07 000000501 INF: FPGA: Recv ZSGSRD 29247
17-03-17 22:56:35.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:56:35.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:35.678 -07 000000415 INF: FPGA: Recv ZSGSRD 29246
17-03-17 22:56:35.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:35.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:35.688 -07 000000409 INF: FPGA: Recv ZSGSRD 29254
17-03-17 22:56:35.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:35.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:35.698 -07 000000576 INF: FPGA: Recv ZSGSRD 29256
17-03-17 22:56:35.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:35.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:35.708 -07 000000541 INF: FPGA: Recv ZSGSRD 29257
17-03-17 22:56:35.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:35.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:35.718 -07 000000448 INF: FPGA: Recv ZSGSRD 29258
17-03-17 22:56:35.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:35.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:35.728 -07 000000623 INF: FPGA: Recv ZSGSRD 29249
17-03-17 22:56:35.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:35.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:35.738 -07 000000475 INF: FPGA: Recv ZSGSRD 29252
17-03-17 22:56:35.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:35.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:35.748 -07 000000429 INF: FPGA: Recv ZSGSRD 29247
17-03-17 22:56:35.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:35.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:35.758 -07 000000462 INF: FPGA: Recv ZSGSRD 29250
17-03-17 22:56:35.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:35.768 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:56:35.768 -07 000000448 INF: FPGA: Recv ZPIEZORD 24865
17-03-17 22:56:35.778 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:35.778 -07 000000610 INF: Z Motor: Piezo is near 33.1 V (nominally 0 to 100 V), expect near 42.7 V, since DAC is at 4.275 V. Piezo Error = -9.6 V.
17-03-17 22:56:35.778 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.2 um, Read 10 ADC samples: Avg = 29252 (-127.5 uncal um), Error = 0.8 uncal um, Median = 29251 (-127.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29246 (-127.4 uncal um), Max = 29258 (-127.5 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 22:56:35.778 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29252, posNoise = 6, negNoise = 6
17-03-17 22:56:35.778 -07 000000610 INF: Z Motor: After move to -0.128240, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:56:35.778 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-17 22:56:35.778 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:56:35.778 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:56:35.778 -07 000000593 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:56:35.778 -07 000000409 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:56:35.778 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:56:35.778 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:56:35.778 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:56:35.778 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:56:35.778 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:56:35.778 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:56:35.778 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:56:35.778 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:56:35.788 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 22:56:35.788 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:56:35.788 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 22:56:35.788 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:56:35.788 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 22:56:35.788 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 22:56:35.798 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 22:56:35.798 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 22:56:35.798 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 463 463 223 223 28191 150\n [Camera]
17-03-17 22:56:35.998 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:56:36.458 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 655
17-03-17 22:56:36.458 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 655
17-03-17 22:56:36.458 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:56:36.458 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:56:36.458 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 1094749800, 0x0, 391868352) start.
17-03-17 22:56:36.458 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 655
17-03-17 22:56:36.458 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 655
17-03-17 22:56:36.458 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:56:36.628 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:56:36.628 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-17 22:56:36.648 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28191 848
17-03-17 22:56:36.798 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP turning grn on 998
17-03-17 22:56:36.838 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 1094749800, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 22:56:36.838 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 22:56:36.838 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:56:36.848 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:56:36.848 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 22:56:37.008 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 372 ms.
17-03-17 22:56:37.008 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-17 22:56:37.008 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:56:37.008 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 22:56:37.018 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 551 ms.
17-03-17 22:56:37.018 -07 000000623 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:56:37.018 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 68. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1095, R2=1131, Total=2226. Warn if over 250 bubbles per interval.
17-03-17 22:56:37.028 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1221
17-03-17 22:56:37.028 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1221
17-03-17 22:56:37.028 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:56:37.028 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1221
17-03-17 22:56:37.028 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1221
17-03-17 22:56:37.028 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:56:37.028 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:56:37.028 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 22:56:37.028 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:56:37.028 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 22:56:37.218 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP 1413
17-03-17 22:56:37.218 -07 000000623 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:56:37.218 -07 000000610 INF: FPGA: 'CAMDBLSNAP 463 463 223 223 28191 150' command took 2 ms to send, 1412 ms to get response, and 1420 ms overall
17-03-17 22:56:37.218 -07 000000610 INF: Skipping AutoFocus in Tile 18: adopting Best-Z from the cache: -0.128572
17-03-17 22:56:37.218 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.12857 mm
17-03-17 22:56:37.218 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:56:37.218 -07 000000593 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-17 22:56:37.218 -07 000000593 INF: Y Motor: Moving to 74.0226 mm, started at 73.1763 mm, delta = 0.8463 mm
17-03-17 22:56:37.218 -07 000000593 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:56:37.218 -07 000000627 INF: Z Motor: Entering MoveAbsStepped (DAC = 28086, sync = True, waitForSettling = False)
17-03-17 22:56:37.218 -07 000000627 INF: Z Motor: Moving to -0.128569 mm, started at -0.128244 mm, distance = -0.33 um
17-03-17 22:56:37.228 -07 000000627 INF: FPGA: Xmit ZDACW 28086\n [Z Motor]
17-03-17 22:56:37.228 -07 000000462 INF: FPGA: Recv YRDPOS 149865
17-03-17 22:56:37.228 -07 000000593 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 22:56:37.228 -07 000000593 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:56:37.228 -07 000000593 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:56:37.228 -07 000000593 INF: Y Motor: Moving 1354 steps-34
17-03-17 22:56:37.228 -07 000000502 INF: FPGA: Recv ZDACW
17-03-17 22:56:37.238 -07 000000627 INF: FPGA: 'ZDACW 28086' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 22:56:37.238 -07 000000627 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:56:37.238 -07 000000478 INF: FPGA: Recv ZDACR 28086
17-03-17 22:56:37.248 -07 000000627 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:37.248 -07 000000627 INF: Z Motor: MoveAbsStepped took 21 ms (did NOT wait for settling yet))
17-03-17 22:56:37.248 -07 000000593 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:56:37.428 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 391 ms.
17-03-17 22:56:37.428 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 394 ms.
17-03-17 22:56:37.428 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 22:56:37.428 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:56:37.428 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 22:56:37.428 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:56:37.428 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:56:37.428 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 22:56:37.428 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:56:37.438 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-17 22:56:37.618 -07 000000618 INF: FPGA: Recv YMVTILE
17-03-17 22:56:37.618 -07 000000593 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-17 22:56:37.658 -07 000000593 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:56:37.658 -07 000000482 INF: FPGA: Recv YRDPOS 151569
17-03-17 22:56:37.668 -07 000000593 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:56:37.668 -07 000000593 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:56:37.668 -07 000000593 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-17 22:56:37.668 -07 000000593 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.846 mm, average velocity = 2.148 mm/sec
17-03-17 22:56:37.968 -07 000000429 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 69, FrontChillerTemperature: 4.004458,
17-03-17 22:56:38.618 -07 000000593 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:56:38.618 -07 000000627 INF: FPGA: Recv YRDPOS 151569
17-03-17 22:56:38.628 -07 000000593 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:56:38.628 -07 000000593 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:56:38.638 -07 000000593 INF: Y Motor: After move to 74.022606, error = -0.014305, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:56:38.638 -07 000000593 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:56:38.638 -07 000000593 INF: Y Motor: Moved to 74.0083 after 1421 ms (table move)
17-03-17 22:56:38.648 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.128569 mm (DAC = 28086)
17-03-17 22:56:38.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:38.648 -07 000000448 INF: FPGA: Recv ZSGSRD 29301
17-03-17 22:56:38.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:56:38.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:38.658 -07 000000551 INF: FPGA: Recv ZSGSRD 29303
17-03-17 22:56:38.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:38.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:38.668 -07 000000482 INF: FPGA: Recv ZSGSRD 29304
17-03-17 22:56:38.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:38.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:38.678 -07 000000415 INF: FPGA: Recv ZSGSRD 29292
17-03-17 22:56:38.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:38.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:38.688 -07 000000502 INF: FPGA: Recv ZSGSRD 29302
17-03-17 22:56:38.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:38.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:38.698 -07 000000547 INF: FPGA: Recv ZSGSRD 29311
17-03-17 22:56:38.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:56:38.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:38.708 -07 000000627 INF: FPGA: Recv ZSGSRD 29302
17-03-17 22:56:38.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:38.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:38.718 -07 000000551 INF: FPGA: Recv ZSGSRD 29299
17-03-17 22:56:38.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:38.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:38.728 -07 000000429 INF: FPGA: Recv ZSGSRD 29301
17-03-17 22:56:38.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:38.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:38.738 -07 000000486 INF: FPGA: Recv ZSGSRD 29300
17-03-17 22:56:38.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:38.748 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:56:38.748 -07 000000448 INF: FPGA: Recv ZPIEZORD 24978
17-03-17 22:56:38.758 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:38.758 -07 000000610 INF: Z Motor: Piezo is near 33.4 V (nominally 0 to 100 V), expect near 42.9 V, since DAC is at 4.286 V. Piezo Error = -9.5 V.
17-03-17 22:56:38.758 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.6 um, Read 10 ADC samples: Avg = 29302 (-127.8 uncal um), Error = 0.8 uncal um, Median = 29302 (-127.8 uncal um), StdDev = 5 (0.0 uncal um), Range = 19 (0.1 uncal um), Min = 29292 (-127.7 uncal um), Max = 29311 (-127.8 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-17 22:56:38.758 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29302, posNoise = 9, negNoise = 10
17-03-17 22:56:38.758 -07 000000610 INF: Z Motor: After move to -0.128569, error = 0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:56:38.758 -07 000000610 INF: Z Motor: Settle wait time = 1423 ms, measure time = 109 ms (allowed 150 ms), total time = 1532 ms
17-03-17 22:56:38.758 -07 000000610 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-17 22:56:38.808 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1584 ms
17-03-17 22:56:38.808 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:56:38.808 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.00830078125, Z-position -0.128565616189015. ----------
17-03-17 22:56:38.808 -07 000000610 INF: Cycle	69	Tile	18	Exposure Settings		A	463	G	223	T	223	C	463
17-03-17 22:56:38.808 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27910, sync = True, waitForSettling = True)
17-03-17 22:56:38.808 -07 000000610 INF: Z Motor: Moving to -0.127764 mm, started at -0.128566 mm, distance = 0.80 um
17-03-17 22:56:38.808 -07 000000610 INF: FPGA: Xmit ZDACW 27910\n [Z Motor]
17-03-17 22:56:38.808 -07 000000576 INF: FPGA: Recv ZDACW
17-03-17 22:56:38.818 -07 000000610 INF: FPGA: 'ZDACW 27910' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 22:56:38.818 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:56:38.818 -07 000000593 INF: FPGA: Recv ZDACR 27910
17-03-17 22:56:38.828 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:38.828 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:56:38.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:38.978 -07 000000409 INF: FPGA: Recv ZSGSRD 29171
17-03-17 22:56:38.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:56:38.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:38.988 -07 000000502 INF: FPGA: Recv ZSGSRD 29178
17-03-17 22:56:38.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:38.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:38.998 -07 000000618 INF: FPGA: Recv ZSGSRD 29182
17-03-17 22:56:39.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:39.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:39.008 -07 000000462 INF: FPGA: Recv ZSGSRD 29180
17-03-17 22:56:39.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:39.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:39.018 -07 000000623 INF: FPGA: Recv ZSGSRD 29175
17-03-17 22:56:39.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:39.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:39.028 -07 000000409 INF: FPGA: Recv ZSGSRD 29181
17-03-17 22:56:39.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:39.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:39.038 -07 000000547 INF: FPGA: Recv ZSGSRD 29180
17-03-17 22:56:39.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:39.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:39.048 -07 000000482 INF: FPGA: Recv ZSGSRD 29180
17-03-17 22:56:39.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:39.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:39.058 -07 000000576 INF: FPGA: Recv ZSGSRD 29170
17-03-17 22:56:39.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:39.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:39.068 -07 000000501 INF: FPGA: Recv ZSGSRD 29179
17-03-17 22:56:39.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:39.078 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:56:39.078 -07 000000448 INF: FPGA: Recv ZPIEZORD 24780
17-03-17 22:56:39.088 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:39.088 -07 000000610 INF: Z Motor: Piezo is near 32.9 V (nominally 0 to 100 V), expect near 42.6 V, since DAC is at 4.259 V. Piezo Error = -9.7 V.
17-03-17 22:56:39.088 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.8 um, Read 10 ADC samples: Avg = 29178 (-127.0 uncal um), Error = 0.8 uncal um, Median = 29180 (-127.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29170 (-126.9 uncal um), Max = 29182 (-127.0 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 22:56:39.088 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29178, posNoise = 4, negNoise = 8
17-03-17 22:56:39.088 -07 000000610 INF: Z Motor: After move to -0.127764, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:56:39.088 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 22:56:39.088 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:56:39.088 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:56:39.088 -07 000000593 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:56:39.088 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:56:39.088 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:56:39.088 -07 000000551 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:56:39.088 -07 000000623 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:56:39.088 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:56:39.088 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:56:39.088 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:56:39.088 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:56:39.088 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:56:39.098 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:56:39.098 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:56:39.098 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:56:39.098 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:56:39.108 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 22:56:39.108 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 22:56:39.108 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 22:56:39.108 -07 000000551 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 22:56:39.118 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 463 463 223 223 28086 150\n [Camera]
17-03-17 22:56:39.308 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:56:39.778 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 655
17-03-17 22:56:39.778 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 655
17-03-17 22:56:39.778 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:56:39.778 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 655
17-03-17 22:56:39.778 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 655
17-03-17 22:56:39.788 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:56:39.788 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:56:39.788 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) start.
17-03-17 22:56:39.788 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:56:39.788 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-17 22:56:39.968 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28086 850
17-03-17 22:56:40.118 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP turning grn on 998
17-03-17 22:56:40.158 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 22:56:40.158 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 22:56:40.158 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:56:40.168 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 379 ms.
17-03-17 22:56:40.168 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-17 22:56:40.168 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:56:40.168 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:56:40.168 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:56:40.168 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 22:56:40.178 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 22:56:40.338 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1221
17-03-17 22:56:40.338 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1221
17-03-17 22:56:40.348 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:56:40.348 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:56:40.348 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 1165594328, 0x0, 391868352) start.
17-03-17 22:56:40.348 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1221
17-03-17 22:56:40.348 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1221
17-03-17 22:56:40.348 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:56:40.458 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:56:40.458 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-17 22:56:40.538 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP 1413
17-03-17 22:56:40.538 -07 000000475 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:56:40.538 -07 000000610 INF: FPGA: 'CAMDBLSNAP 463 463 223 223 28086 150' command took 2 ms to send, 1411 ms to get response, and 1420 ms overall
17-03-17 22:56:40.538 -07 000000610 INF: Skipping AutoFocus in Tile 19: adopting Best-Z from the cache: -0.128253
17-03-17 22:56:40.538 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.12825 mm
17-03-17 22:56:40.538 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:56:40.538 -07 000000502 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-17 22:56:40.538 -07 000000502 INF: Y Motor: Moving to 74.8526 mm, started at 74.0083 mm, delta = 0.8443 mm
17-03-17 22:56:40.538 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:56:40.538 -07 000000462 INF: Z Motor: Entering MoveAbsStepped (DAC = 28017, sync = True, waitForSettling = False)
17-03-17 22:56:40.538 -07 000000462 INF: Z Motor: Moving to -0.128254 mm, started at -0.127769 mm, distance = -0.48 um
17-03-17 22:56:40.538 -07 000000593 INF: FPGA: Recv YRDPOS 151569
17-03-17 22:56:40.548 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:56:40.548 -07 000000502 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:56:40.548 -07 000000502 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:56:40.548 -07 000000462 INF: FPGA: Xmit ZDACW 28017\n [Z Motor]
17-03-17 22:56:40.548 -07 000000502 INF: Y Motor: Moving 1351 steps-29
17-03-17 22:56:40.548 -07 000000541 INF: FPGA: Recv ZDACW
17-03-17 22:56:40.558 -07 000000462 INF: FPGA: 'ZDACW 28017' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 22:56:40.558 -07 000000462 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:56:40.558 -07 000000551 INF: FPGA: Recv ZDACR 28017
17-03-17 22:56:40.568 -07 000000502 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:56:40.568 -07 000000462 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:40.568 -07 000000462 INF: Z Motor: MoveAbsStepped took 23 ms (did NOT wait for settling yet))
17-03-17 22:56:40.718 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 1165594328, 0x0, 391868352) end. Duration was 378 ms.
17-03-17 22:56:40.718 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-17 22:56:40.718 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:56:40.728 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:56:40.728 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 22:56:40.828 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 373 ms.
17-03-17 22:56:40.828 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-17 22:56:40.828 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:56:40.838 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:56:40.838 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 495 ms.
17-03-17 22:56:40.948 -07 000000501 INF: FPGA: Recv YMVTILE
17-03-17 22:56:40.948 -07 000000502 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 400 ms overall
17-03-17 22:56:40.968 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:56:40.968 -07 000000409 INF: FPGA: Recv YRDPOS 153256
17-03-17 22:56:40.978 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:56:40.978 -07 000000502 INF: Y Motor: Encoder = 153256 = motor step 119731.3 = 74.8320 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:56:40.978 -07 000000502 INF: Y Motor: Position error before settling (table move) = -42 encoder counts (-0.021 mm)
17-03-17 22:56:40.978 -07 000000502 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 401 ms, distance = 0.844 mm, average velocity = 2.106 mm/sec
17-03-17 22:56:41.928 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:56:41.928 -07 000000501 INF: FPGA: Recv YRDPOS 153256
17-03-17 22:56:41.938 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:41.938 -07 000000502 INF: Y Motor: Encoder = 153256 = motor step 119731.3 = 74.8320 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:56:41.948 -07 000000502 INF: Y Motor: After move to 74.852608, error = -0.020576, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:56:41.948 -07 000000502 INF: Y Motor: Position error after settling (table move) = -42 encoder counts (-0.021 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:56:41.948 -07 000000502 INF: Y Motor: Moved to 74.8320 after 1411 ms (table move)
17-03-17 22:56:41.948 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.128254 mm (DAC = 28017)
17-03-17 22:56:41.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:41.958 -07 000000541 INF: FPGA: Recv ZSGSRD 29261
17-03-17 22:56:41.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:56:41.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:41.968 -07 000000618 INF: FPGA: Recv ZSGSRD 29260
17-03-17 22:56:41.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:41.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:41.978 -07 000000462 INF: FPGA: Recv ZSGSRD 29246
17-03-17 22:56:41.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:41.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:41.988 -07 000000478 INF: FPGA: Recv ZSGSRD 29256
17-03-17 22:56:41.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:41.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:41.998 -07 000000502 INF: FPGA: Recv ZSGSRD 29250
17-03-17 22:56:42.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:42.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:42.008 -07 000000486 INF: FPGA: Recv ZSGSRD 29256
17-03-17 22:56:42.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:42.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:42.018 -07 000000415 INF: FPGA: Recv ZSGSRD 29253
17-03-17 22:56:42.018 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:56:42.018 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 68. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1095, R2=1131, Total=2226. Warn if over 250 bubbles per interval.
17-03-17 22:56:42.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:42.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:42.028 -07 000000486 INF: FPGA: Recv ZSGSRD 29250
17-03-17 22:56:42.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:42.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:42.038 -07 000000415 INF: FPGA: Recv ZSGSRD 29255
17-03-17 22:56:42.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:42.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:42.048 -07 000000551 INF: FPGA: Recv ZSGSRD 29257
17-03-17 22:56:42.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:42.058 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:56:42.058 -07 000000409 INF: FPGA: Recv ZPIEZORD 24914
17-03-17 22:56:42.068 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:42.068 -07 000000610 INF: Z Motor: Piezo is near 33.2 V (nominally 0 to 100 V), expect near 42.8 V, since DAC is at 4.275 V. Piezo Error = -9.5 V.
17-03-17 22:56:42.068 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.3 um, Read 10 ADC samples: Avg = 29254 (-127.5 uncal um), Error = 0.8 uncal um, Median = 29256 (-127.5 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 29246 (-127.4 uncal um), Max = 29261 (-127.5 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 22:56:42.068 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29254, posNoise = 7, negNoise = 8
17-03-17 22:56:42.068 -07 000000610 INF: Z Motor: After move to -0.128254, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:56:42.068 -07 000000610 INF: Z Motor: Settle wait time = 1412 ms, measure time = 111 ms (allowed 150 ms), total time = 1523 ms
17-03-17 22:56:42.068 -07 000000610 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-17 22:56:42.108 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1566 ms
17-03-17 22:56:42.108 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:56:42.108 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83203125, Z-position -0.12825725400621. ----------
17-03-17 22:56:42.108 -07 000000610 INF: Cycle	69	Tile	19	Exposure Settings		A	463	G	223	T	223	C	463
17-03-17 22:56:42.108 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27840, sync = True, waitForSettling = True)
17-03-17 22:56:42.108 -07 000000610 INF: Z Motor: Moving to -0.127443 mm, started at -0.128257 mm, distance = 0.81 um
17-03-17 22:56:42.108 -07 000000610 INF: FPGA: Xmit ZDACW 27840\n [Z Motor]
17-03-17 22:56:42.108 -07 000000576 INF: FPGA: Recv ZDACW
17-03-17 22:56:42.118 -07 000000610 INF: FPGA: 'ZDACW 27840' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:56:42.118 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:56:42.118 -07 000000429 INF: FPGA: Recv ZDACR 27840
17-03-17 22:56:42.128 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:42.128 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:56:42.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:42.278 -07 000000618 INF: FPGA: Recv ZSGSRD 29122
17-03-17 22:56:42.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:56:42.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:42.288 -07 000000551 INF: FPGA: Recv ZSGSRD 29131
17-03-17 22:56:42.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:42.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:42.298 -07 000000382 INF: FPGA: Recv ZSGSRD 29136
17-03-17 22:56:42.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:42.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:42.308 -07 000000593 INF: FPGA: Recv ZSGSRD 29127
17-03-17 22:56:42.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:42.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:42.318 -07 000000482 INF: FPGA: Recv ZSGSRD 29131
17-03-17 22:56:42.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:42.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:42.328 -07 000000623 INF: FPGA: Recv ZSGSRD 29127
17-03-17 22:56:42.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:42.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:42.338 -07 000000429 INF: FPGA: Recv ZSGSRD 29127
17-03-17 22:56:42.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:42.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:42.348 -07 000000415 INF: FPGA: Recv ZSGSRD 29128
17-03-17 22:56:42.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:42.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:42.358 -07 000000448 INF: FPGA: Recv ZSGSRD 29128
17-03-17 22:56:42.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:42.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:56:42.368 -07 000000462 INF: FPGA: Recv ZSGSRD 29134
17-03-17 22:56:42.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:42.378 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:56:42.378 -07 000000618 INF: FPGA: Recv ZPIEZORD 24727
17-03-17 22:56:42.388 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:56:42.388 -07 000000610 INF: Z Motor: Piezo is near 32.8 V (nominally 0 to 100 V), expect near 42.5 V, since DAC is at 4.248 V. Piezo Error = -9.7 V.
17-03-17 22:56:42.388 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.4 um, Read 10 ADC samples: Avg = 29129 (-126.7 uncal um), Error = 0.8 uncal um, Median = 29128 (-126.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 29122 (-126.6 uncal um), Max = 29136 (-126.7 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 22:56:42.388 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29129, posNoise = 7, negNoise = 7
17-03-17 22:56:42.388 -07 000000610 INF: Z Motor: After move to -0.127443, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:56:42.388 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-17 22:56:42.388 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:56:42.388 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:56:42.388 -07 000000478 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:56:42.388 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:56:42.388 -07 000000482 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:56:42.388 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:56:42.388 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:56:42.388 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:56:42.388 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:56:42.388 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:56:42.388 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:56:42.388 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:56:42.398 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 22:56:42.398 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:56:42.398 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:56:42.398 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:56:42.408 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-17 22:56:42.408 -07 000000482 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 22:56:42.408 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 22:56:42.408 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 22:56:42.408 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 463 463 223 223 28017 150\n [Camera]
17-03-17 22:56:42.608 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:56:43.078 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 655
17-03-17 22:56:43.078 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 655
17-03-17 22:56:43.078 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:56:43.078 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:56:43.078 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 22:56:43.078 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 655
17-03-17 22:56:43.078 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 655
17-03-17 22:56:43.088 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:56:43.088 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:56:43.088 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 22:56:43.268 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28017 848
17-03-17 22:56:43.328 -07 000000551 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 69, FrontChillerTemperature: 4.005817,
17-03-17 22:56:43.418 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP turning grn on 998
17-03-17 22:56:43.458 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 382 ms.
17-03-17 22:56:43.468 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 22:56:43.468 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:56:43.468 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:56:43.468 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 22:56:43.468 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 384 ms.
17-03-17 22:56:43.468 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-17 22:56:43.468 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:56:43.478 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:56:43.478 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 22:56:43.638 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1221
17-03-17 22:56:43.638 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1221
17-03-17 22:56:43.638 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:56:43.648 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1221
17-03-17 22:56:43.648 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1221
17-03-17 22:56:43.648 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:56:43.648 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:56:43.648 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1094749800, 0x0, 391868352) start.
17-03-17 22:56:43.658 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:56:43.658 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) start.
17-03-17 22:56:43.828 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP 1414
17-03-17 22:56:43.838 -07 000000547 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:56:43.838 -07 000000610 INF: FPGA: 'CAMDBLSNAP 463 463 223 223 28017 150' command took 2 ms to send, 1410 ms to get response, and 1420 ms overall
17-03-17 22:56:44.028 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1094749800, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 22:56:44.028 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-17 22:56:44.028 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:56:44.028 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) end. Duration was 373 ms.
17-03-17 22:56:44.028 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-17 22:56:44.028 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:56:44.038 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 22:56:44.038 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 22:56:44.038 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-17 22:56:44.038 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 22:56:44.038 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 22:56:44.078 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 41 ms.
17-03-17 22:56:44.078 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-17 22:56:44.118 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 41 ms.
17-03-17 22:56:44.128 -07 000000610 INF: Enabling Skipping AutoFocus in the next 0 cycles.
17-03-17 22:56:44.128 -07 000000610 INF: Imaging Cycle 69: ScanTilesCommand Cycle 69 time end. Duration was 142043 ms.
17-03-17 22:56:44.128 -07 000000610 INF: =================== Cycle #69 ===================
17-03-17 22:56:44.128 -07 000000610 INF: ===================  ===================
17-03-17 22:56:44.128 -07 000000482 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-17 22:56:44.138 -07 000000486 INF: FPGA: Recv EXLED1ADCR 25
17-03-17 22:56:44.138 -07 000000482 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 22:56:44.138 -07 000000482 INF: GreenLED: Using Green data: Photodiode ADC 25 --> 0.0 mW (old method), or 1.8 mW (new method). Difference = 1.8 mW
17-03-17 22:56:44.138 -07 000000482 INF: Predictive Diagnostic Log Cycle Entry Metrics: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 69, FrontChillerTemperature: 4.005817, FrontChillerHeatSinkTemperature: 0.410335, AmbientTemperature: 18.8265, FlowCellCompartmentTemperature: 21.9911, FlowCellTargetTemperature: 22, FlowCellHeatSinkTemperature: 18.61859, GreenLEDSensorTemperature: 25.59012, PhotodiodePowerAdcGreen: 25, PhotodiodePowerMwGreen: 1.835864
17-03-17 22:56:44.188 -07 000000610 INF: Y-Drift Offset assigned 0.002126916.